Title: Structural Equation Modelling in R with OpenMx
Description: Create, run, and report structural equation and twin models quickly.
If you're just starting out, try typing ?umx.
Author: Timothy C Bates [aut, cre]
Maintainer: Timothy C Bates <timothy.c.bates@gmail.com>
Diff between umx versions 1.1.1 dated 2016-02-07 and 1.1.5 dated 2016-03-06
umx-1.1.1/umx/man/umxReRun.Rd |only umx-1.1.1/umx/man/umxStandardizeModel.Rd |only umx-1.1.1/umx/man/umx_SQL_from_Excel.Rd |only umx-1.1.1/umx/tests |only umx-1.1.5/umx/DESCRIPTION | 14 +- umx-1.1.5/umx/MD5 | 159 +++++++++++------------- umx-1.1.5/umx/NAMESPACE | 7 - umx-1.1.5/umx/NEWS | 6 umx-1.1.5/umx/R/build_run_modify.r | 140 ++++++++++----------- umx-1.1.5/umx/R/datasets_openmx.R |only umx-1.1.5/umx/R/deprecated.r | 4 umx-1.1.5/umx/R/fit_and_reporting.r | 179 ++++++++-------------------- umx-1.1.5/umx/R/misc_and_utility.r | 169 ++++++++++++++++++-------- umx-1.1.5/umx/R/xmu.r | 22 +++ umx-1.1.5/umx/README.md | 1 umx-1.1.5/umx/data/ex9_6.rda |only umx-1.1.5/umx/inst/CITATION | 38 +++++ umx-1.1.5/umx/man/RMSEA.MxModel.Rd | 4 umx-1.1.5/umx/man/RMSEA.Rd | 4 umx-1.1.5/umx/man/RMSEA.summary.mxmodel.Rd | 4 umx-1.1.5/umx/man/confint.MxModel.Rd | 4 umx-1.1.5/umx/man/dl_from_dropbox.Rd | 6 umx-1.1.5/umx/man/ex9_6.Rd |only umx-1.1.5/umx/man/extractAIC.MxModel.Rd | 4 umx-1.1.5/umx/man/getOpenMx.Rd |only umx-1.1.5/umx/man/logLik.Rd | 4 umx-1.1.5/umx/man/plot.MxModel.Rd | 4 umx-1.1.5/umx/man/residuals.MxModel.Rd | 4 umx-1.1.5/umx/man/umx-deprecated.Rd | 4 umx-1.1.5/umx/man/umx.Rd | 12 - umx-1.1.5/umx/man/umxACE.Rd | 3 umx-1.1.5/umx/man/umxCI.Rd | 4 umx-1.1.5/umx/man/umxCI_boot.Rd | 4 umx-1.1.5/umx/man/umxCP.Rd | 3 umx-1.1.5/umx/man/umxCompare.Rd | 8 - umx-1.1.5/umx/man/umxDiagnose.Rd | 4 umx-1.1.5/umx/man/umxExpCov.Rd | 4 umx-1.1.5/umx/man/umxExpMeans.Rd | 4 umx-1.1.5/umx/man/umxFactor.Rd | 7 - umx-1.1.5/umx/man/umxFitIndices.Rd | 4 umx-1.1.5/umx/man/umxFixAll.Rd | 1 umx-1.1.5/umx/man/umxGxE.Rd | 3 umx-1.1.5/umx/man/umxIP.Rd | 1 umx-1.1.5/umx/man/umxLabel.Rd | 4 umx-1.1.5/umx/man/umxLatent.Rd | 4 umx-1.1.5/umx/man/umxModify.Rd |only umx-1.1.5/umx/man/umxPath.Rd | 26 ++-- umx-1.1.5/umx/man/umxPlotACE.Rd | 4 umx-1.1.5/umx/man/umxPlotACEcov.Rd | 4 umx-1.1.5/umx/man/umxRAM.Rd | 6 umx-1.1.5/umx/man/umxRun.Rd | 4 umx-1.1.5/umx/man/umxSetParameters.Rd | 4 umx-1.1.5/umx/man/umxSummary.MxModel.Rd | 9 + umx-1.1.5/umx/man/umxSummaryACE.Rd | 14 +- umx-1.1.5/umx/man/umxSummaryACEcov.Rd | 3 umx-1.1.5/umx/man/umxSummaryCP.Rd | 6 umx-1.1.5/umx/man/umxSummaryGxE.Rd | 6 umx-1.1.5/umx/man/umxSummaryIP.Rd | 6 umx-1.1.5/umx/man/umxThresholdMatrix.Rd | 4 umx-1.1.5/umx/man/umxValues.Rd | 6 umx-1.1.5/umx/man/umx_check_parallel.Rd | 2 umx-1.1.5/umx/man/umx_drop_ok.Rd | 4 umx-1.1.5/umx/man/umx_fix_first_loadings.Rd | 4 umx-1.1.5/umx/man/umx_fix_latents.Rd | 4 umx-1.1.5/umx/man/umx_get_checkpoint.Rd | 1 umx-1.1.5/umx/man/umx_get_cores.Rd | 1 umx-1.1.5/umx/man/umx_get_optimizer.Rd | 1 umx-1.1.5/umx/man/umx_move_file.Rd | 4 umx-1.1.5/umx/man/umx_open.Rd | 4 umx-1.1.5/umx/man/umx_rename_file.Rd | 3 umx-1.1.5/umx/man/umx_set_auto_plot.Rd |only umx-1.1.5/umx/man/umx_set_auto_run.Rd | 1 umx-1.1.5/umx/man/umx_set_checkpoint.Rd | 1 umx-1.1.5/umx/man/umx_set_cores.Rd | 1 umx-1.1.5/umx/man/umx_set_optimizer.Rd | 1 umx-1.1.5/umx/man/umx_sql_from_excel.Rd |only umx-1.1.5/umx/man/umx_standardize_RAM.Rd |only umx-1.1.5/umx/man/umx_time.Rd | 16 +- 78 files changed, 531 insertions(+), 470 deletions(-)
Title: Function for Converting Cardinal to Ordinal Numbers by Adding a
Language Specific Ordinal Indicator to the Number
Description: Function for converting cardinal to ordinal numbers by adding a language specific ordinal indicator (http://en.wikipedia.org/wiki/Ordinal_indicator) to the number.
Author: Damian W. Betebenner [aut, cre],
Andrew Martin [ctb],
Jeff Erickson [ctb]
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between toOrdinal versions 0.0-4 dated 2015-07-24 and 0.0-6 dated 2016-03-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/toOrdinal.R | 16 ++++++++-------- inst/CITATION | 8 ++++---- inst/NEWS | 8 ++++++++ man/toOrdinal-package.Rd | 4 ++-- tests/testthat/test_toOrdinal_english.R | 17 ++++++++--------- tests/testthat/test_toOrdinal_swedish.R | 21 ++++++++++----------- 8 files changed, 51 insertions(+), 45 deletions(-)
Title: Similarity Regression Functions
Description: Functions for performing Bayesian `similarity regression',
specialised for modelling the association between a HPO-encoded phenotype
and binary genotype. A `no association' model is compared with one in which
the log odds of having a rare genotype is linked to the semantic similarity
between patient phenotype and a latent characteristic phenotype. The method
estimates the probability of an association together with an HPO-coded phenotype
characteristic of the disease.
Author: Daniel Greene
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between SimReg versions 1.3 dated 2016-01-13 and 1.4 dated 2016-03-06
SimReg-1.3/SimReg/inst/doc/SimReg-guide.R |only SimReg-1.3/SimReg/inst/doc/SimReg-guide.Rmd |only SimReg-1.3/SimReg/inst/doc/SimReg-guide.html |only SimReg-1.3/SimReg/inst/examples |only SimReg-1.3/SimReg/vignettes/SimReg-guide.Rmd |only SimReg-1.4/SimReg/DESCRIPTION | 8 SimReg-1.4/SimReg/MD5 | 71 - SimReg-1.4/SimReg/NAMESPACE | 20 SimReg-1.4/SimReg/R/functions.R | 192 ++- SimReg-1.4/SimReg/R/generics.R |only SimReg-1.4/SimReg/R/multiSimReg.R |only SimReg-1.4/SimReg/R/plots.R | 52 SimReg-1.4/SimReg/R/simReg.R | 631 ++++++++-- SimReg-1.4/SimReg/build/vignette.rds |binary SimReg-1.4/SimReg/inst/doc/SimReg-Indroduction.R |only SimReg-1.4/SimReg/inst/doc/SimReg-Indroduction.Rmd |only SimReg-1.4/SimReg/inst/doc/SimReg-Indroduction.html |only SimReg-1.4/SimReg/inst/doc/SimReg-Priors.R |only SimReg-1.4/SimReg/inst/doc/SimReg-Priors.Rmd |only SimReg-1.4/SimReg/inst/doc/SimReg-Priors.html |only SimReg-1.4/SimReg/man/P-open-paren-gamma-equals-1-close-paren.Rd |only SimReg-1.4/SimReg/man/P_y_given_x.Rd |only SimReg-1.4/SimReg/man/SimReg-package.Rd | 4 SimReg-1.4/SimReg/man/acceptance_traces.Rd |only SimReg-1.4/SimReg/man/as.data.frame.sim_reg_summary.Rd |only SimReg-1.4/SimReg/man/final_sample.Rd |only SimReg-1.4/SimReg/man/log_odds_trace.Rd | 10 SimReg-1.4/SimReg/man/multi_sim_reg.Rd |only SimReg-1.4/SimReg/man/plot.sim_reg_samples.Rd |only SimReg-1.4/SimReg/man/plot.sim_reg_summary.Rd |only SimReg-1.4/SimReg/man/print.sim_reg_samples.Rd |only SimReg-1.4/SimReg/man/print.sim_reg_summary.Rd |only SimReg-1.4/SimReg/man/s.Rd |only SimReg-1.4/SimReg/man/s_phi.Rd |only SimReg-1.4/SimReg/man/s_x.Rd |only SimReg-1.4/SimReg/man/sim_reg.Rd | 70 - SimReg-1.4/SimReg/man/sim_reg_mc.Rd |only SimReg-1.4/SimReg/man/subset_sim_reg_samples.Rd |only SimReg-1.4/SimReg/man/summary.sim_reg_samples.Rd |only SimReg-1.4/SimReg/src/Chain.cpp | 103 + SimReg-1.4/SimReg/src/Chain.h | 3 SimReg-1.4/SimReg/src/HPO.cpp | 29 SimReg-1.4/SimReg/src/RcppExports.cpp | 43 SimReg-1.4/SimReg/src/RcppExports.h | 8 SimReg-1.4/SimReg/src/Similarity.cpp | 43 SimReg-1.4/SimReg/src/Similarity.h | 6 SimReg-1.4/SimReg/src/State.cpp | 21 SimReg-1.4/SimReg/src/State.h | 8 SimReg-1.4/SimReg/src/Update.cpp | 101 - SimReg-1.4/SimReg/src/Update.h | 22 SimReg-1.4/SimReg/vignettes/SimReg-Indroduction.Rmd |only SimReg-1.4/SimReg/vignettes/SimReg-Priors.Rmd |only 52 files changed, 1051 insertions(+), 394 deletions(-)
Title: Phylogenetic Tools for Comparative Biology (and Other Things)
Description: Package contains various functions for phylogenetic analysis.
This functionality is concentrated in the phylogenetic analysis of
comparative data from species. For example, the package includes
functions for Bayesian and ML ancestral state estimation; visual
simulation of trait evolution; fitting models of trait evolution
with multiple Brownian rates and correlations; visualizing
discrete and continuous character evolution using colors or
projections into trait space; identifying the location of a change
in the rate of character evolution on the tree; fast Brownian motion
simulation and simulation under several other models of
continuous trait evolution; fitting a model of correlated binary
trait evolution; locating the position of a fossil or an recently
extinct lineage on a tree using continuous character data with ML;
plotting lineage accumulation through time, including across
multiple trees (such as a Bayesian posterior sample); conducting
an analysis called stochastic character mapping, in which character
histories for a discrete trait are sampled from their posterior
probability distribution under a model; conducting a multiple
(i.e., partial) Mantel test; fitting a phylogenetic regression model
with error in predictor and response variables; conducting a
phylogenetic principal components analysis, a phylogenetic
regression, a reduced major axis regression, a phylogenetic
canonical correlation analysis, and a phylogenetic ANOVA; projecting
a tree onto a geographic map; simulating discrete character
histories on the tree; and fitting a model in which a discrete
character evolves under the threshold model. In addition to this
phylogenetic comparative method functionality, the package also
contains functions for a wide range of other purposes in
phylogenetic biology. For instance, functionality in this package
includes (but is not restricted to): adding taxa to a tree
(including randomly, everywhere, or automatically to genera);
generating all bi- and multi-furcating trees for a set of taxa;
reducing a phylogeny to its backbone tree; dropping tips or adding
tips to special types of phylogenetic trees; exporting a tree as an
XML file; converting a tree with a mapped character to a tree with
singleton nodes and one character state per edge; estimating a
phylogeny using the least squares method; simulating birth-death
trees under a range of conditions; rerooting trees; a wide range
of visualizations of trees; and a variety of other manipulations
and analyses that phylogenetic biologists may find useful for
their research.
Author: Liam J. Revell
Maintainer: Liam J. Revell <liam.revell@umb.edu>
Diff between phytools versions 0.5-10 dated 2015-12-10 and 0.5-20 dated 2016-03-06
DESCRIPTION | 8 +++---- MD5 | 52 ++++++++++++++++++++++++++---------------------- NAMESPACE | 12 +++++------ R/contMap.R | 6 +++-- R/cophylo.R | 4 ++- R/densityMap.R | 14 +++++++----- R/densityTree.R |only R/dotTree.R |only R/fitPagel.R | 20 ++++++++---------- R/map.to.singleton.R | 12 ++++++++++- R/phenogram.R | 35 +++++++++++++++++++++++++------- R/phylo.heatmap.R |only R/plotBranchbyTrait.R | 8 ++++++- R/plotSimmap.R | 9 +++----- R/read.newick.R | 8 +++---- R/utilities.R | 27 ++++++++++++++++-------- man/add.color.bar.Rd | 2 - man/contMap.Rd | 2 - man/cophylo.Rd | 2 - man/densityMap.Rd | 2 - man/densityTree.Rd |only man/dotTree.Rd |only man/fitMk.Rd | 2 - man/fitPagel.Rd | 5 ++-- man/map.to.singleton.Rd | 4 ++- man/nodeHeights.Rd | 7 +++--- man/phenogram.Rd | 2 - man/phylo.heatmap.Rd |only man/read.newick.Rd | 3 +- man/reroot.Rd | 4 +-- 30 files changed, 155 insertions(+), 95 deletions(-)
Title: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Description: Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history.
Author: Krzysztof Bartoszek <bartoszekkj@gmail.com>
Maintainer: Krzysztof Bartoszek <bartoszekkj@gmail.com>
Diff between mvSLOUCH versions 1.2.2 dated 2016-02-02 and 1.3 dated 2016-03-06
DESCRIPTION | 6 +- MD5 | 13 ++--- R/simulVasicekprocphyl.R | 98 +++++++++++++++++++++++++++------------ R/wrappers.R | 31 +++++++++--- man/drawPhylProcess.Rd |only man/simulBMProcPhylTree.Rd | 40 ++++++++++++++- man/simulMVSLOUCHProcPhylTree.Rd | 42 ++++++++++++++-- man/simulOUCHProcPhylTree.Rd | 42 +++++++++++++++- 8 files changed, 214 insertions(+), 58 deletions(-)
Title: Multilocus Random Mixed Linear Model for Genome-Wide Association
Study
Description: Conduct multi-locus random-SNP-effect mixed linear model analysis for genome-wide association study. First, each marker is scanned using random-SNP-effect mixed linear model method. Then, all the markers selected from the first step are included in the multi-locus model and their effects are estimated by an EM empirical Bayes method. No multiple test correction is needed.
Author: Wenlong Ren,Shibo Wang and Yuanming Zhang
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>
Diff between mrMLM versions 1.0 dated 2016-02-26 and 1.1 dated 2016-03-06
DESCRIPTION | 8 MD5 | 8 R/mrMLM.R | 382 ++++++++++++++++++++++++++++++++++------------- inst/doc/Instruction.pdf |binary man/mrMLM-package.Rd | 4 5 files changed, 293 insertions(+), 109 deletions(-)
Title: Linear Mixed Effect Model Splines for Modelling and Analysis of
Time Course Data
Description: Linear Mixed effect Model Splines ('lmms') implements linear mixed
effect model splines for modelling and differential expression for highly
dimensional data sets: investNoise() for quality control and filterNoise() for
removing non-informative trajectories; lmmSpline() to model time course expression
profiles and lmmsDE() performs differential expression analysis to identify
differential expression between groups, time and/or group x time interaction.
Author: Jasmin Straube [aut, cre],
Kim-Anh Le Cao [aut],
Emma Huang [aut],
Dominique Gorse [ctb]
Maintainer: Jasmin Straube <j.straube@qfab.org>
Diff between lmms versions 1.3 dated 2015-07-17 and 1.3.3 dated 2016-03-06
DESCRIPTION | 30 +++++++------- MD5 | 60 ++++++++++++++-------------- NAMESPACE | 25 +++++++----- R/deriv.lmmspline-method.R | 24 ++--------- R/filterNoise-method.R | 2 R/investNoise-method.R | 37 +++++++++-------- R/lmmSpline-method.R | 81 ++++++++++++++++++++------------------- R/lmmsDE-method.R | 26 +++++------- R/plot.lmmsde-method.R | 87 ++++++++++++++++++++++++------------------ R/plot.lmmspline-method.R | 67 ++++++++++++++++++-------------- R/plot.noise-method.R | 6 +- R/predict.lmmspline-method.R | 5 -- R/summary.lmmsde-methods.R | 2 data/kidneySimTimeGroup.RData |binary man/deriv.lmmspline.Rd | 6 -- man/filterNoise-methods.Rd | 10 ++-- man/investNoise-methods.Rd | 12 +---- man/lmmSpline-methods.Rd | 41 ++++++++----------- man/lmms-class.Rd | 2 man/lmms-package.Rd | 6 +- man/lmmsDE-methods.Rd | 6 +- man/lmmsde-class.Rd | 2 man/lmmspline-class.Rd | 2 man/noise-class.Rd | 2 man/plot.lmmsde.Rd | 10 ++-- man/plot.lmmspline.Rd | 16 +++---- man/plot.noise.Rd | 2 man/predict.lmmspline.Rd | 2 man/summary.lmmsde.Rd | 4 - man/summary.lmmspline.Rd | 2 man/summary.noise.Rd | 2 31 files changed, 290 insertions(+), 289 deletions(-)
Title: Various R Functions from the Kostas Lab
Description: A collection of R functions of common use in
the Kostas Lab for microbial ecology.
Author: Luis M. Rodriguez-R [aut, cre]
Maintainer: Luis M. Rodriguez-R <lmrodriguezr@gmail.com>
Diff between enveomics.R versions 1.0.0 dated 2016-01-12 and 1.0.1 dated 2016-03-06
DESCRIPTION | 4 +-- MD5 | 12 +++++----- R/recplot2.R | 46 +++++++++++++++++++++++++++++++----------- README.md | 39 +++++++++++++++++++++-------------- man/enve.recplot2.Rd | 4 ++- man/enve.recplot2.__counts.Rd | 2 - man/plot.enve.RecPlot2.Rd | 5 ++-- 7 files changed, 73 insertions(+), 39 deletions(-)
Title: Mean and Variance Modeling of Count Data
Description: Modeling under- and over-dispersed count data using extended Poisson process models (EPPM).
Author: David M Smith, Malcolm J Faddy
Maintainer: David M. Smith <david.m.smith@truvenhealth.com>
Diff between CountsEPPM versions 2.0 dated 2014-11-01 and 2.1 dated 2016-03-06
CountsEPPM-2.0/CountsEPPM/R/CountsEPPM.distribution.R |only CountsEPPM-2.0/CountsEPPM/R/CountsEPPM.summary.R |only CountsEPPM-2.0/CountsEPPM/man/CountsEPPM.distribution.Rd |only CountsEPPM-2.0/CountsEPPM/man/CountsEPPM.summary.Rd |only CountsEPPM-2.1/CountsEPPM/DESCRIPTION | 14 +-- CountsEPPM-2.1/CountsEPPM/MD5 | 59 +++++++------- CountsEPPM-2.1/CountsEPPM/NAMESPACE | 3 CountsEPPM-2.1/CountsEPPM/R/CountsEPPM.R | 1 CountsEPPM-2.1/CountsEPPM/R/distribution.CountsEPPM.R |only CountsEPPM-2.1/CountsEPPM/R/logLik.CountsEPPM.R |only CountsEPPM-2.1/CountsEPPM/R/summary.CountsEPPM.R |only CountsEPPM-2.1/CountsEPPM/build |only CountsEPPM-2.1/CountsEPPM/data/Luningetal.litters.rda |binary CountsEPPM-2.1/CountsEPPM/data/Titanic.survivors.case.rda |binary CountsEPPM-2.1/CountsEPPM/data/Williams.litters.rda |binary CountsEPPM-2.1/CountsEPPM/data/ceriodaphnia.group.rda |binary CountsEPPM-2.1/CountsEPPM/data/herons.group.rda |binary CountsEPPM-2.1/CountsEPPM/data/takeover.bids.case.rda |binary CountsEPPM-2.1/CountsEPPM/man/CountsEPPM-package.Rd | 19 ++-- CountsEPPM-2.1/CountsEPPM/man/CountsEPPM.Rd | 16 ++- CountsEPPM-2.1/CountsEPPM/man/EPPMprob.Rd | 4 CountsEPPM-2.1/CountsEPPM/man/F.Regression.Counts.Rd | 4 CountsEPPM-2.1/CountsEPPM/man/Faddyprob.general.Rd | 3 CountsEPPM-2.1/CountsEPPM/man/Faddyprob.limiting.Rd | 3 CountsEPPM-2.1/CountsEPPM/man/LL.Regression.Counts.Rd | 4 CountsEPPM-2.1/CountsEPPM/man/Luningetal.litters.Rd | 3 CountsEPPM-2.1/CountsEPPM/man/Model.Counts.Rd | 3 CountsEPPM-2.1/CountsEPPM/man/Model.Faddy.Rd | 3 CountsEPPM-2.1/CountsEPPM/man/Model.FaddyJMV.general.Rd | 4 CountsEPPM-2.1/CountsEPPM/man/Model.FaddyJMV.limiting.Rd | 3 CountsEPPM-2.1/CountsEPPM/man/ceriodaphnia.group.Rd | 6 - CountsEPPM-2.1/CountsEPPM/man/distribution.CountsEPPM.Rd |only CountsEPPM-2.1/CountsEPPM/man/herons.group.Rd | 3 CountsEPPM-2.1/CountsEPPM/man/logLik.CountsEPPM.Rd |only CountsEPPM-2.1/CountsEPPM/man/summary.CountsEPPM.Rd |only CountsEPPM-2.1/CountsEPPM/man/takeover.bids.case.Rd | 8 - 36 files changed, 94 insertions(+), 69 deletions(-)
Title: Companion Animal Population Management
Description: Quantitative analysis to support companion animal population
management.
Author: Oswaldo Santos Baquero [aut, cre],
Marcos Amaku [ctb],
Fernando Ferreira [ctb]
Maintainer: Oswaldo Santos Baquero <oswaldosant@gmail.com>
Diff between capm versions 0.9.0 dated 2015-12-06 and 0.9.1 dated 2016-03-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 5 +++-- NEWS | 8 ++++++++ R/capm-package.R | 8 +++++--- inst/CITATION | 2 +- man/capm-package.Rd | 4 ++-- 7 files changed, 29 insertions(+), 18 deletions(-)
Title: A Lightweight Core of the 'assertive' Package
Description: A minimal set of predicates and assertions used by the assertive
package. This is mainly for use by other package developers who want to
include run-time testing features in their own packages. End-users will
usually want to use assertive directly.
Author: Richard Cotton [aut, cre],
Sunkyu Choi [trl],
Ivanka Skakun [trl],
Gergely Dar<c3><b3>czi [trl],
Anton Antonov [trl],
Hisham Ben Hamidane [trl],
Anja Billing [trl],
Aditya Bhagwat [trl],
Rasmus B<c3><a5><c3><a5>th [trl],
Mine Cetinkaya-Rundel [trl],
Aspasia Chatziefthymiou [trl]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.base versions 0.0-3 dated 2015-10-08 and 0.0-4 dated 2016-03-06
assertive.base-0.0-3/assertive.base/man/print_and_capture.Rd |only assertive.base-0.0-3/assertive.base/man/truncate.Rd |only assertive.base-0.0-4/assertive.base/DESCRIPTION | 15 assertive.base-0.0-4/assertive.base/MD5 | 81 ++-- assertive.base-0.0-4/assertive.base/NAMESPACE | 116 ++--- assertive.base-0.0-4/assertive.base/NEWS | 3 assertive.base-0.0-4/assertive.base/R/are-identical.R | 160 ++++---- assertive.base-0.0-4/assertive.base/R/assert-are-identical.R | 122 +++--- assertive.base-0.0-4/assertive.base/R/assert-identical-to-true-false-na.R | 20 - assertive.base-0.0-4/assertive.base/R/cause.R | 24 - assertive.base-0.0-4/assertive.base/R/coercion.R | 2 assertive.base-0.0-4/assertive.base/R/engine.R | 17 assertive.base-0.0-4/assertive.base/R/internal.R | 24 + assertive.base-0.0-4/assertive.base/R/utils.R | 138 +++++-- assertive.base-0.0-4/assertive.base/R/zzz.R |only assertive.base-0.0-4/assertive.base/README.md | 194 +++++----- assertive.base-0.0-4/assertive.base/inst/po/kr |only assertive.base-0.0-4/assertive.base/inst/po/ua |only assertive.base-0.0-4/assertive.base/man/Truth.Rd | 58 +- assertive.base-0.0-4/assertive.base/man/are_identical.Rd | 128 +++--- assertive.base-0.0-4/assertive.base/man/assert_engine.Rd | 11 assertive.base-0.0-4/assertive.base/man/assertionError.Rd | 98 ++--- assertive.base-0.0-4/assertive.base/man/bapply.Rd | 4 assertive.base-0.0-4/assertive.base/man/call_and_name.Rd | 6 assertive.base-0.0-4/assertive.base/man/cause.Rd | 2 assertive.base-0.0-4/assertive.base/man/coerce_to.Rd | 14 assertive.base-0.0-4/assertive.base/man/dont_stop.Rd | 30 - assertive.base-0.0-4/assertive.base/man/false.Rd | 2 assertive.base-0.0-4/assertive.base/man/get_name_in_parent.Rd | 2 assertive.base-0.0-4/assertive.base/man/is2.Rd | 6 assertive.base-0.0-4/assertive.base/man/merge.list.Rd | 21 - assertive.base-0.0-4/assertive.base/man/merge_dots_with_list.Rd | 19 assertive.base-0.0-4/assertive.base/man/na.Rd | 2 assertive.base-0.0-4/assertive.base/man/parenthesize.Rd | 14 assertive.base-0.0-4/assertive.base/man/print.vector_with_cause.Rd | 6 assertive.base-0.0-4/assertive.base/man/set_cause.Rd | 18 assertive.base-0.0-4/assertive.base/man/strip_attributes.Rd | 2 assertive.base-0.0-4/assertive.base/man/type_description.Rd | 2 assertive.base-0.0-4/assertive.base/man/use_first.Rd | 11 assertive.base-0.0-4/assertive.base/po/R-assertive.base.pot | 190 ++++----- assertive.base-0.0-4/assertive.base/po/R-kr.po |only assertive.base-0.0-4/assertive.base/po/R-ua.po |only assertive.base-0.0-4/assertive.base/tests/testthat.R | 6 assertive.base-0.0-4/assertive.base/tests/testthat/test-are-identical.R | 26 - assertive.base-0.0-4/assertive.base/tests/testthat/test-utils.R | 36 + 45 files changed, 899 insertions(+), 731 deletions(-)
More information about assertive.base at CRAN
Permanent link
Title: Plant Root System Architecture Analysis Using DART and RSML
Files
Description: Analysis of complex plant root system architectures (RSA) using the output files created by Data Analysis of Root Tracings (DART), an open-access software dedicated to the study of plant root architecture and development across time series (Le Bot et al (2010) DART: a software to analyse root system architecture and development from captured images, Plant and Soil, DOI: 10.1007/s11104-009-0005-2), and RSA data encoded with the Root System Markup Language (RSML) (Lobet et al (2015) Root System Markup Language: toward a unified root architecture description language, Plant Physiology, DOI: 10.1104/pp.114.253625). More information can be found in Delory et al (2016) archiDART: an R package for the automated computation of plant root architectural traits, Plant and Soil, DOI: 10.1007/s11104-015-2673-4.
Author: Benjamin M Delory, Caroline Baudson, Yves Brostaux, Guillaume Lobet, Patrick du Jardin, Loic Pages, Pierre Delaplace
Maintainer: Benjamin M Delory <Benjamin.Delory@leuphana.de>
Diff between archiDART versions 1.2 dated 2015-12-22 and 1.3 dated 2016-03-06
DESCRIPTION | 10 - MD5 | 16 +- R/rsmlToDART.R | 391 +++++++++++++++++++----------------------------------- R/xnodes.R |only R/ynodes.R |only man/archidraw.Rd | 4 man/archigrow.Rd | 4 man/architect.Rd | 4 man/latdist.Rd | 4 man/trajectory.Rd | 4 10 files changed, 168 insertions(+), 269 deletions(-)
Title: Read and Write MAT Files and Call MATLAB from Within R
Description: Methods readMat() and writeMat() for reading and writing MAT files. For user with MATLAB v6 or newer installed (either locally or on a remote host), the package also provides methods for controlling MATLAB (trademark) via R and sending and retrieving data between R and MATLAB.
Author: Henrik Bengtsson [aut, cre, cph], Andy Jacobson [ctb] (Internal MAT v4 reader), Jason Riedy [ctb] (Support for reading compressed files, sparse matrices and UTF-encoded strings.)
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.matlab versions 3.4.0 dated 2016-02-03 and 3.5.0 dated 2016-03-06
R.matlab-3.4.0/R.matlab/tests/octave-bug42562-empty.mat |only R.matlab-3.4.0/R.matlab/tests/octave-bug42562-scalar.mat |only R.matlab-3.4.0/R.matlab/tests/octave-bug42562-vector.mat |only R.matlab-3.5.0/R.matlab/DESCRIPTION | 14 R.matlab-3.5.0/R.matlab/MD5 | 22 - R.matlab-3.5.0/R.matlab/NEWS | 12 R.matlab-3.5.0/R.matlab/R/999.package.R | 2 R.matlab-3.5.0/R.matlab/R/readMat.R | 208 ++-------- R.matlab-3.5.0/R.matlab/inst/externals/MatlabServer.m | 24 - R.matlab-3.5.0/R.matlab/inst/mat-files/datetime,arraytype=17-v5.mat |only R.matlab-3.5.0/R.matlab/man/1._The_MATLAB_server_running_in_MATLAB.Rd | 24 - R.matlab-3.5.0/R.matlab/man/Matlab.Rd | 2 R.matlab-3.5.0/R.matlab/man/R.matlab-package.Rd | 4 R.matlab-3.5.0/R.matlab/man/readMat.Rd | 18 14 files changed, 110 insertions(+), 220 deletions(-)
Title: A Toolbox for Non-Tabular Data Manipulation
Description: Provides a set of functions for data manipulation with
list objects, including mapping, filtering, grouping, sorting,
updating, searching, and other useful functions. Most functions
are designed to be pipeline friendly so that data processing with
lists can be chained.
Author: Kun Ren <ken@renkun.me>
Maintainer: Kun Ren <ken@renkun.me>
Diff between rlist versions 0.4.5.1 dated 2015-09-09 and 0.4.6 dated 2016-03-06
DESCRIPTION | 9 +- MD5 | 144 ++++++++++++++++++++++---------------------- NAMESPACE | 3 NEWS | 2 R/list.clean.R | 15 ++-- R/list.common.R | 19 ++++- R/list.expand.R |only R/list.table.R | 11 ++- README.md | 2 man/List.Rd | 2 man/list.all.Rd | 2 man/list.any.Rd | 2 man/list.append.Rd | 2 man/list.apply.Rd | 2 man/list.cases.Rd | 2 man/list.cbind.Rd | 2 man/list.class.Rd | 2 man/list.clean.Rd | 14 ++-- man/list.common.Rd | 6 - man/list.count.Rd | 2 man/list.do.Rd | 2 man/list.exclude.Rd | 2 man/list.expand.Rd |only man/list.extract.Rd | 2 man/list.filter.Rd | 2 man/list.find.Rd | 2 man/list.findi.Rd | 2 man/list.first.Rd | 2 man/list.flatten.Rd | 2 man/list.group.Rd | 2 man/list.insert.Rd | 2 man/list.is.Rd | 2 man/list.iter.Rd | 2 man/list.join.Rd | 2 man/list.last.Rd | 2 man/list.load.Rd | 2 man/list.map.Rd | 2 man/list.maps.Rd | 2 man/list.mapv.Rd | 2 man/list.match.Rd | 2 man/list.merge.Rd | 2 man/list.names.Rd | 2 man/list.order.Rd | 2 man/list.parse.Rd | 2 man/list.prepend.Rd | 2 man/list.rbind.Rd | 2 man/list.remove.Rd | 2 man/list.reverse.Rd | 2 man/list.sample.Rd | 2 man/list.save.Rd | 2 man/list.search.Rd | 2 man/list.select.Rd | 2 man/list.serialize.Rd | 2 man/list.skip.Rd | 2 man/list.skipWhile.Rd | 2 man/list.sort.Rd | 2 man/list.stack.Rd | 2 man/list.subset.Rd | 2 man/list.table.Rd | 6 + man/list.take.Rd | 2 man/list.takeWhile.Rd | 2 man/list.ungroup.Rd | 2 man/list.unserialize.Rd | 2 man/list.unzip.Rd | 2 man/list.update.Rd | 2 man/list.which.Rd | 2 man/list.zip.Rd | 2 man/nyweather.Rd | 2 man/rlist-package.Rd | 2 man/subset.list.Rd | 2 man/tryEval.Rd | 2 man/tryGet.Rd | 2 tests/testthat/test-List.R | 2 tests/testthat/test-basic.R | 9 ++ 74 files changed, 196 insertions(+), 164 deletions(-)
Title: Functions for Text Mining and Topic Modeling
Description: An aid for text mining in R, with a syntax that
is more familiar to experienced R users. Also, implements various functions
related to topic modeling. It works well with with the "lda" package by J.
Chang.
Author: "Thomas W. Jones <jones.thos.w@gmail.com>"
Maintainer: Thomas W. Jones <jones.thos.w@gmail.com>
Diff between textmineR versions 1.5.1 dated 2015-12-31 and 1.6.0 dated 2016-03-06
DESCRIPTION | 11 +++- MD5 | 32 ++++++------- R/CalcLikelihood.R | 12 +++-- R/CalcTopicModelR2.R | 13 +++-- R/DepluralizeDtm.R | 14 ++++-- R/Dtm2Docs.R | 10 +++- R/Files2Vec.R | 11 +++- R/ProbCoherence.R | 3 - R/TmParallelApply.R | 110 +++++++++++++++++++++++++++--------------------- R/Vec2Dtm.R | 5 +- README.md | 62 ++++++++++++++++----------- man/CalcLikelihood.Rd | 10 +++- man/CalcTopicModelR2.Rd | 10 +++- man/DepluralizeDtm.Rd | 10 +++- man/Dtm2Docs.Rd | 10 +++- man/Files2Vec.Rd | 10 +++- man/TmParallelApply.Rd | 6 ++ 17 files changed, 220 insertions(+), 119 deletions(-)
Title: XML-RPC Interface to NEOS
Description: Within this package the XML-RPC API to NEOS is implemented. This enables the user to pass optimization problems to NEOS and retrieve results within R.
Author: Bernhard Pfaff [aut, cre]
Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>
Diff between rneos versions 0.2-8 dated 2014-12-28 and 0.3-1 dated 2016-03-06
DESCRIPTION | 16 +-- MD5 | 52 +++++----- man/CreateNeosComm.Rd | 6 - man/CreateXmlString.Rd | 130 +++++++++++++-------------- man/NemailHelp.Rd | 94 +++++++++---------- man/NeosAns-class.Rd | 6 - man/NeosComm-class.Rd | 2 man/NeosJob-class.Rd | 6 - man/NeosOff-class.Rd | 6 - man/NeosXml-class.Rd | 6 - man/NgetFinalResults.Rd | 128 +++++++++++++------------- man/NgetFinalResultsNonBlocking.Rd | 130 +++++++++++++-------------- man/NgetIntermediateResults.Rd | 142 ++++++++++++++--------------- man/NgetIntermediateResultsNonBlocking.Rd | 144 +++++++++++++++--------------- man/NgetJobInfo.Rd | 128 +++++++++++++------------- man/NgetJobStatus.Rd | 128 +++++++++++++------------- man/NgetSolverTemplate.Rd | 102 ++++++++++----------- man/Nhelp.Rd | 98 ++++++++++---------- man/NkillJob.Rd | 90 +++++++++--------- man/NlistAllSolvers.Rd | 96 ++++++++++---------- man/NlistCategories.Rd | 96 ++++++++++---------- man/NlistServersInCategory.Rd | 106 +++++++++++----------- man/Nping.Rd | 100 ++++++++++---------- man/NprintQueue.Rd | 98 ++++++++++---------- man/NsubmitJob.Rd | 90 +++++++++--------- man/Nversion.Rd | 100 ++++++++++---------- man/Nwelcome.Rd | 98 ++++++++++---------- 27 files changed, 1099 insertions(+), 1099 deletions(-)
Title: Gene and Splice Site Annotation Using Annotation Data from
Ensembl and UCSC Genome Browsers
Description: Contains functionality for import and managing of downloaded genome annotation Data from Ensembl genome browser (European Bioinformatics Institute) and from UCSC genome browser (University of California, Santa Cruz) and annotation routines for genomic positions and splice site positions.
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers <kaisers@med.uni-duesseldorf.de>
Diff between refGenome versions 1.5.8 dated 2015-07-28 and 1.6.0 dated 2016-03-06
ChangeLog | 12 DESCRIPTION | 8 MD5 | 44 +- NAMESPACE | 1 NEWS | 24 + R/refGenome.r | 687 ++++++++++++++++++++------------- build/vignette.rds |binary inst/doc/readGTF.pdf |binary inst/doc/refGenome.R | 35 + inst/doc/refGenome.Rnw | 10 inst/doc/refGenome.pdf |binary inst/extdata/hs.ensembl.62.small.RData |binary man/extractByGeneID.Rd |only man/extractByGeneName.Rd | 4 man/getGenePositions.Rd | 7 man/refGenome-class.Rd | 4 man/refJunctions-class.Rd | 4 man/unifyJuncs.Rd | 32 + src/refGenome.cpp | 364 +++++++++-------- src/refGenome.h | 4 tests/test-all.R | 2 tests/test_overlap_juncs.r | 18 tests/test_unify_juncs.r |only vignettes/refGenome.Rnw | 10 24 files changed, 771 insertions(+), 499 deletions(-)
Title: Robust Data Envelopment Analysis (DEA) for R
Description: Data Envelopment Analysis for R, estimating robust DEA scores without and with environmental variables and doing returns-to-scale tests.
Author: Jaak Simm [aut, cre],
Galina Besstremyannaya [aut]
Maintainer: Jaak Simm <jaak.simm@gmail.com>
Diff between rDEA versions 1.2-2 dated 2015-08-04 and 1.2-3 dated 2016-03-06
rDEA-1.2-2/rDEA/src/tags |only rDEA-1.2-3/rDEA/DESCRIPTION | 6 +++--- rDEA-1.2-3/rDEA/MD5 | 11 +++++------ rDEA-1.2-3/rDEA/R/dea.env.robust.R | 14 ++++++++------ rDEA-1.2-3/rDEA/inst/CHANGELOG | 4 ++++ rDEA-1.2-3/rDEA/inst/tests/testthat/test-bootstrap.r | 6 +++--- rDEA-1.2-3/rDEA/man/dea_env_robust.Rd | 4 ++-- 7 files changed, 25 insertions(+), 20 deletions(-)
Title: Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
Description: Functions for estimating structural equation models using model-
implied instrumental variables.
Author: Zachary Fisher, Ken Bollen, Kathleen Gates, and Mikko Rönkkö.
Maintainer: Zachary Fisher <fish.zachary@gmail.com>
Diff between MIIVsem versions 0.4.5 dated 2016-03-04 and 0.4.6 dated 2016-03-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/miive.R | 4 ++-- R/miivs.R | 48 ++++++++++++++++++++++++++++++++++++++---------- R/print.miive.R | 2 +- 5 files changed, 48 insertions(+), 20 deletions(-)
Title: Eye-Tracking Data Analysis
Description: A set of tools that address tasks along the pipeline from raw
data to analysis and visualization for eye-tracking data. Offers several
popular types of analyses, including linear and growth curve time analyses,
onset-contingent reaction time analyses, as well as several non-parametric
bootstrapping approaches.
Author: Jacob Dink [aut, cre],
Brock Ferguson [aut]
Maintainer: Jacob Dink <jacobwdink@gmail.com>
Diff between eyetrackingR versions 0.1.4 dated 2016-01-26 and 0.1.5 dated 2016-03-06
DESCRIPTION | 8 - MD5 | 16 +-- NEWS.md | 3 R/time_sequence_data.R | 94 +++++++++++++++-------- inst/doc/divergence_vignette.html | 26 +++--- inst/doc/growth_curve_analysis_vignette.html | 25 ++---- inst/doc/onset_contingent_analysis_vignette.html | 23 ++--- inst/doc/preparing_your_data_vignette.html | 17 +--- inst/doc/window_analysis_vignette.html | 21 ++--- 9 files changed, 134 insertions(+), 99 deletions(-)
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Description: Calculates the Delaunay triangulation and the Dirichlet
or Voronoi tessellation (with respect to the entire plane) of
a planar point set. Plots triangulations and tessellations in
various ways. Clips tessellations to sub-windows. Calculates
perimeters of tessellations.
Author: Rolf Turner
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>
Diff between deldir versions 0.1-9 dated 2015-03-09 and 0.1-12 dated 2016-03-06
deldir-0.1-12/deldir/ChangeLog | 69 ++++++++ deldir-0.1-12/deldir/DESCRIPTION | 12 - deldir-0.1-12/deldir/MD5 | 72 +++++---- deldir-0.1-12/deldir/NAMESPACE | 7 deldir-0.1-12/deldir/R/binsrt.R |only deldir-0.1-12/deldir/R/deldir.R | 139 ++++++++++++++--- deldir-0.1-12/deldir/R/divchain.R |only deldir-0.1-12/deldir/R/divchain.default.R |only deldir-0.1-12/deldir/R/divchain.deldir.R |only deldir-0.1-12/deldir/R/plot.divchain.R |only deldir-0.1-12/deldir/R/tile.list.R | 9 - deldir-0.1-12/deldir/R/triang.list.R | 16 +- deldir-0.1-12/deldir/inst/ratfor/binsrt.r | 10 - deldir-0.1-12/deldir/inst/ratfor/delout.r | 18 +- deldir-0.1-12/deldir/inst/ratfor/delseg.r | 14 - deldir-0.1-12/deldir/inst/ratfor/dirout.r | 17 +- deldir-0.1-12/deldir/inst/ratfor/dirseg.r | 22 +- deldir-0.1-12/deldir/inst/ratfor/dldins.r | 9 + deldir-0.1-12/deldir/inst/ratfor/master.r | 27 +-- deldir-0.1-12/deldir/man/deldir-internal.Rd | 4 deldir-0.1-12/deldir/man/deldir.Rd | 212 +++++++++++++++++---------- deldir-0.1-12/deldir/man/divchain.Rd |only deldir-0.1-12/deldir/man/divchain.default.Rd |only deldir-0.1-12/deldir/man/divchain.deldir.Rd |only deldir-0.1-12/deldir/man/duplicatedxy.Rd | 20 +- deldir-0.1-12/deldir/man/plot.deldir.Rd | 2 deldir-0.1-12/deldir/man/plot.divchain.Rd |only deldir-0.1-12/deldir/man/plot.tile.list.Rd | 6 deldir-0.1-12/deldir/man/plot.triang.list.Rd | 6 deldir-0.1-12/deldir/man/tile.centroids.Rd | 2 deldir-0.1-12/deldir/man/tile.list.Rd | 10 + deldir-0.1-12/deldir/man/tilePerim.Rd | 2 deldir-0.1-12/deldir/man/triMat.Rd | 2 deldir-0.1-12/deldir/man/triang.list.Rd | 32 ++-- deldir-0.1-12/deldir/src/binsrt.f | 6 deldir-0.1-12/deldir/src/delout.f | 15 - deldir-0.1-12/deldir/src/delseg.f | 14 - deldir-0.1-12/deldir/src/dirout.f | 17 +- deldir-0.1-12/deldir/src/dirseg.f | 30 ++- deldir-0.1-12/deldir/src/dldins.f | 9 + deldir-0.1-12/deldir/src/master.f | 59 +++---- deldir-0.1-9/deldir/R/declareGlobals.R |only 42 files changed, 576 insertions(+), 313 deletions(-)
Title: Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Description: Some helpful extensions and modifications to the 'ggplot2'
library. In particular, this package makes it easy to combine multiple
'ggplot2' plots into one and label them with letters, e.g. A, B, C, etc.,
as is often required for scientific publications. The package also provides
a streamlined and clean theme that is used in the Wilke lab, hence the
package name, which stands for Claus O. Wilke's plot library.
Author: Claus O. Wilke [aut, cre],
Hadley Wickham [cph]
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between cowplot versions 0.6.0 dated 2015-12-19 and 0.6.1 dated 2016-03-06
DESCRIPTION | 6 +-- MD5 | 59 +++++++++++++++++----------------- NAMESPACE | 1 NEWS | 6 +++ R/draw.R | 70 ++++++++++++++++++++++++++++++++++++++--- R/plot_grid.R | 2 - R/save.R | 10 ++--- R/switch_axis.R | 2 + R/themes.R | 3 + TODO | 5 ++ build/vignette.rds |binary inst/doc/axis_position.R | 22 +++++++++--- inst/doc/axis_position.Rmd | 24 ++++++++++---- inst/doc/axis_position.html | 38 ++++++++++++++-------- inst/doc/introduction.html | 36 +++++++++++---------- inst/doc/plot_annotations.html | 20 +++++------ inst/doc/plot_grid.R | 15 -------- inst/doc/plot_grid.Rmd | 19 ----------- inst/doc/plot_grid.html | 42 +++++++----------------- inst/doc/shared_legends.R | 2 - inst/doc/shared_legends.Rmd | 2 - inst/doc/shared_legends.html | 14 ++++---- man/draw_figure_label.Rd |only man/draw_line.Rd | 2 - man/draw_plot_label.Rd | 8 ++-- man/ggsave.Rd | 2 - man/plot_grid.Rd | 2 - man/save_plot.Rd | 8 ++-- vignettes/axis_position.Rmd | 24 ++++++++++---- vignettes/plot_grid.Rmd | 19 ----------- vignettes/shared_legends.Rmd | 2 - 31 files changed, 259 insertions(+), 206 deletions(-)
Title: Calculation of Thermal Comfort Indices
Description: Functions to calculate various common and less common thermal comfort indices.
Author: Marcel Schweiker [aut, cre] and Sophia Mueller [aut] and michael Kleber [ctr] and Boris Kingma [ctr] and masanori Shukuya [ctr]
Maintainer: Marcel Schweiker <marcel.schweiker@kit.edu>
Diff between comf versions 0.1 dated 2016-03-04 and 0.1.1 dated 2016-03-06
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/ComfortIndices.r | 16 ++++++++-------- 3 files changed, 13 insertions(+), 13 deletions(-)
Title: Assertions to Check Properties of Strings
Description: A set of predicates and assertions for checking the properties of
strings. This is mainly for use by other package developers who want to
include run-time testing features in their own packages. End-users will
usually want to use assertive directly.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.strings versions 0.0-1 dated 2015-10-06 and 0.0-2 dated 2016-03-06
DESCRIPTION | 15 ++-- MD5 | 36 ++++----- NAMESPACE | 7 + NEWS | 3 R/assert-is-empty-character.R | 18 ++++ R/assert-is-special-string.R | 41 +++++++++++ R/is-special-string.R | 31 +++++++- README.md | 102 ++++++++++++++-------------- man/character_to_list_of_integer_vectors.Rd | 2 man/create_regex.Rd | 2 man/d.Rd | 4 - man/is_empty_character.Rd | 12 ++- man/is_numeric_string.Rd | 26 ++++++- man/is_single_character.Rd | 8 +- man/matches_regex.Rd | 6 - man/recycle.Rd | 2 man/strip_invalid_chars.Rd | 8 +- tests/testthat.R | 7 - tests/testthat/test-is-special-string.R | 21 +++++ 19 files changed, 246 insertions(+), 105 deletions(-)
More information about assertive.strings at CRAN
Permanent link
Title: Assertions for Checking the State of R
Description: A set of predicates and assertions for checking the state and
capabilities of R, the operating system it is running on, and the IDE
being used. This is mainly for use by other package developers who
want to include run-time testing features in their own packages.
End-users will usually want to use assertive directly.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.reflection versions 0.0-1 dated 2015-10-06 and 0.0-2 dated 2016-03-06
DESCRIPTION | 13 - MD5 | 56 ++--- NAMESPACE | 342 ++++++++++++++++----------------- NEWS | 5 R/assert-r-has-capability.R | 12 - R/imports.R | 2 R/is-ide.R | 25 +- R/locale.R | 6 R/r-has-capability.R | 55 +++++ README.md | 130 ++++++------ man/is_batch_mode.Rd | 4 man/is_on_os_path.Rd | 4 man/is_package_current.Rd | 4 man/is_r.Rd | 8 man/is_r_current.Rd | 4 man/is_rstudio_current.Rd | 6 man/is_rstudio_desktop.Rd | 4 man/is_windows.Rd | 28 +- man/is_xxx_for_decimal_point.Rd | 30 +- man/locale_categories.Rd | 2 man/r_can_find_tools.Rd | 31 ++ man/r_has_jpeg_capability.Rd | 8 man/rstudio_version_info.Rd | 2 man/sys_get_locale.Rd | 12 - tests/testthat.R | 14 - tests/testthat/test-is-32-64-bit.R | 34 +-- tests/testthat/test-is-decimal-point.R | 176 ++++++++-------- tests/testthat/test-is-ide.R | 26 +- tests/testthat/test-is-r-mode.R | 82 +++---- 29 files changed, 619 insertions(+), 506 deletions(-)
More information about assertive.reflection at CRAN
Permanent link