Title: Clean Biological Occurrence Records
Description: Clean biological occurrence records. Includes functionality
for cleaning based on various aspects of spatial coordinates,
unlikely values due to political 'centroids', coordinates based on
where collections of specimens are held, and more.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between scrubr versions 0.1.0 dated 2016-03-04 and 0.1.1 dated 2016-03-07
DESCRIPTION | 8 ++++---- MD5 | 42 ++++++++++++++++++++++++------------------ NAMESPACE | 1 + NEWS.md | 8 ++++++++ R/coord-funs.R | 10 +++++++--- R/dedup.R | 2 +- R/scrubr-package.R | 15 +-------------- R/scrubr_datasets.R |only R/taxonomy-funs.R | 8 ++++++-- README.md | 21 +++++++++++---------- data/sampledata3.rda |only data/sampledata4.rda |only inst/doc/scrubr_vignette.Rmd | 8 ++++++-- inst/doc/scrubr_vignette.html | 8 ++++++-- inst/vign/scrubr_vignette.Rmd | 8 ++++++-- inst/vign/scrubr_vignette.md | 8 ++++++-- man/coords.Rd | 10 +++++++--- man/sample_data_1.Rd | 17 ++++++++++++++--- man/sample_data_2.Rd | 15 ++++++++++++++- man/sample_data_3.Rd |only man/sample_data_4.Rd |only man/scrubr_datasets.Rd |only man/taxonomy.Rd | 8 ++++++-- tests/testthat/test-dates.R | 2 +- vignettes/scrubr_vignette.Rmd | 8 ++++++-- 25 files changed, 135 insertions(+), 72 deletions(-)
Title: Poly-Omic Prediction of Complex TRaits
Description: It provides functions to generate a correlation matrix
from a genetic dataset and to use this matrix to predict the phenotype of an
individual by using the phenotypes of the remaining individuals through
kriging. Kriging is a geostatistical method for optimal prediction or best
unbiased linear prediction. It consists of predicting the value of a
variable at an unobserved location as a weighted sum of the variable at
observed locations. Intuitively, it works as a reverse linear regression:
instead of computing correlation (univariate regression coefficients are
simply scaled correlation) between a dependent variable Y and independent
variables X, it uses known correlation between X and Y to predict Y.
Author: Hae Kyung Im, Heather E. Wheeler, Keston Aquino Michaels, Vassily
Trubetskoy
Maintainer: Hae Kyung Im <haky@uchicago.edu>
Diff between OmicKriging versions 1.3 dated 2014-06-18 and 1.4.0 dated 2016-03-07
DESCRIPTION | 19 ++++++------- MD5 | 32 +++++++++++----------- NAMESPACE | 12 +++++++- R/correlation_matrices.R | 7 ++++ R/input_pheno_GT.R | 6 ---- R/omic_KRIGR.R | 60 ++++++------------------------------------ README.md | 8 +++-- build/vignette.rds |binary inst/doc/OmicKriging.pdf |binary man/krigr_cross_validation.Rd | 30 ++++----------------- man/load_sample_data.Rd | 9 +----- man/make_GXM.Rd | 5 ++- man/make_PCs_irlba.Rd | 7 ++-- man/make_PCs_svd.Rd | 7 ++-- man/okriging.Rd | 35 ++++-------------------- man/read_GRMBin.Rd | 7 ++-- man/write_GRMBin.Rd | 10 ++++--- 17 files changed, 92 insertions(+), 162 deletions(-)
Title: Column-Linked and Row-Linked Matrices
Description: Matrices implemented as collections of matrix-like nodes, linked by
columns or rows.
Author: Gustavo de los Campos [aut],
Alexander Grueneberg [aut, cre]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>
Diff between LinkedMatrix versions 1.0.0 dated 2015-10-22 and 1.1.0 dated 2016-03-07
LinkedMatrix-1.0.0/LinkedMatrix/man/apply-LinkedMatrix-method.Rd |only LinkedMatrix-1.0.0/LinkedMatrix/man/colMeans-LinkedMatrix-method.Rd |only LinkedMatrix-1.0.0/LinkedMatrix/man/colSums-LinkedMatrix-method.Rd |only LinkedMatrix-1.0.0/LinkedMatrix/man/rowMeans-LinkedMatrix-method.Rd |only LinkedMatrix-1.0.0/LinkedMatrix/man/rowSums-LinkedMatrix-method.Rd |only LinkedMatrix-1.0.0/LinkedMatrix/man/summary-LinkedMatrix-method.Rd |only LinkedMatrix-1.1.0/LinkedMatrix/DESCRIPTION | 11 LinkedMatrix-1.1.0/LinkedMatrix/MD5 | 58 + LinkedMatrix-1.1.0/LinkedMatrix/NAMESPACE | 18 LinkedMatrix-1.1.0/LinkedMatrix/NEWS.md |only LinkedMatrix-1.1.0/LinkedMatrix/R/ColumnLinkedMatrix.R | 148 +++- LinkedMatrix-1.1.0/LinkedMatrix/R/LinkedMatrix.R | 279 +++------ LinkedMatrix-1.1.0/LinkedMatrix/R/RowLinkedMatrix.R | 141 +++- LinkedMatrix-1.1.0/LinkedMatrix/R/package.R | 15 LinkedMatrix-1.1.0/LinkedMatrix/R/utils.R |only LinkedMatrix-1.1.0/LinkedMatrix/README.md | 76 -- LinkedMatrix-1.1.0/LinkedMatrix/inst |only LinkedMatrix-1.1.0/LinkedMatrix/man/ColumnLinkedMatrix-class.Rd | 24 LinkedMatrix-1.1.0/LinkedMatrix/man/LinkedMatrix-class.Rd | 21 LinkedMatrix-1.1.0/LinkedMatrix/man/LinkedMatrix-package.Rd |only LinkedMatrix-1.1.0/LinkedMatrix/man/LinkedMatrix.Rd | 37 + LinkedMatrix-1.1.0/LinkedMatrix/man/RowLinkedMatrix-class.Rd | 23 LinkedMatrix-1.1.0/LinkedMatrix/man/as.matrix.LinkedMatrix.Rd |only LinkedMatrix-1.1.0/LinkedMatrix/man/cbind.ColumnLinkedMatrix.Rd |only LinkedMatrix-1.1.0/LinkedMatrix/man/cbind.RowLinkedMatrix.Rd |only LinkedMatrix-1.1.0/LinkedMatrix/man/index.Rd | 6 LinkedMatrix-1.1.0/LinkedMatrix/man/initialize-ColumnLinkedMatrix-method.Rd | 25 LinkedMatrix-1.1.0/LinkedMatrix/man/initialize-RowLinkedMatrix-method.Rd | 21 LinkedMatrix-1.1.0/LinkedMatrix/man/nNodes.Rd |only LinkedMatrix-1.1.0/LinkedMatrix/man/nodes.Rd | 6 LinkedMatrix-1.1.0/LinkedMatrix/man/rbind.ColumnLinkedMatrix.Rd |only LinkedMatrix-1.1.0/LinkedMatrix/man/rbind.RowLinkedMatrix.Rd |only LinkedMatrix-1.1.0/LinkedMatrix/man/show-LinkedMatrix-method.Rd | 12 LinkedMatrix-1.1.0/LinkedMatrix/man/sub-ColumnLinkedMatrix-method.Rd | 12 LinkedMatrix-1.1.0/LinkedMatrix/man/sub-RowLinkedMatrix-method.Rd | 11 LinkedMatrix-1.1.0/LinkedMatrix/man/subset-ColumnLinkedMatrix-method.Rd | 10 LinkedMatrix-1.1.0/LinkedMatrix/man/subset-RowLinkedMatrix-method.Rd | 9 LinkedMatrix-1.1.0/LinkedMatrix/tests/testthat/test-LinkedMatrix.R | 301 +++++----- 38 files changed, 741 insertions(+), 523 deletions(-)
Title: Short Term Forecasting via GMDH-Type Neural Network Algorithms
Description: Group method of data handling (GMDH) - type neural network algorithm is the heuristic self-organization method for modelling the complex systems. In this package, GMDH-type neural network algorithms are applied to make short term forecasting for a univariate time series.
Author: Osman Dag, Ceylan Yozgatligil
Maintainer: Osman Dag <osman.dag@hacettepe.edu.tr>
Diff between GMDH versions 1.2 dated 2015-12-28 and 1.3 dated 2016-03-07
DESCRIPTION | 8 +- MD5 | 12 +-- NAMESPACE | 6 - R/fcast.R | 190 ++++++++++++++++++++++++++++++++++++++++++++++++++++++---- man/GMDH.Rd | 4 - man/cancer.Rd | 2 man/fcast.Rd | 23 ++++--- 7 files changed, 208 insertions(+), 37 deletions(-)
Title: Fast Compressed Neural Networks for R
Description: Provides an interface to kernel routines from the FCNN C++ library.
FCNN is based on a completely new Artificial Neural Network representation that
offers unmatched efficiency, modularity, and extensibility. FCNN4R provides
standard teaching (backpropagation, Rprop, simulated annealing, stochastic
gradient) and pruning algorithms (minimum magnitude, Optimal Brain Surgeon),
but it is first and foremost an efficient computational engine. Users can
easily implement their algorithms by taking advantage of fast gradient computing
routines, as well as network reconstruction functionality (removing weights
and redundant neurons, reordering inputs, merging networks). Networks can be
exported to C functions in order to integrate them into virtually any software
solution.
Author: Grzegorz Klima <gklima@users.sourceforge.net>
Maintainer: Grzegorz Klima <gklima@users.sourceforge.net>
Diff between FCNN4R versions 0.6.0 dated 2015-12-31 and 0.6.1 dated 2016-03-07
FCNN4R-0.6.0/FCNN4R/src/fcnn/version.h |only FCNN4R-0.6.1/FCNN4R/DESCRIPTION | 9 +-- FCNN4R-0.6.1/FCNN4R/MD5 | 70 +++++++++++++------------ FCNN4R-0.6.1/FCNN4R/NAMESPACE | 1 FCNN4R-0.6.1/FCNN4R/R/dataset.R | 2 FCNN4R-0.6.1/FCNN4R/R/fcnn4r.R | 2 FCNN4R-0.6.1/FCNN4R/R/mlp_gteach.R | 14 ++--- FCNN4R-0.6.1/FCNN4R/R/mlp_net.R | 72 ++++++++++++++++---------- FCNN4R-0.6.1/FCNN4R/R/mlp_plot.R | 2 FCNN4R-0.6.1/FCNN4R/R/mlp_prune.R | 2 FCNN4R-0.6.1/FCNN4R/R/mlp_teach.R | 14 +---- FCNN4R-0.6.1/FCNN4R/man/mlp_net-class.Rd | 2 FCNN4R-0.6.1/FCNN4R/man/mlp_net-display.Rd |only FCNN4R-0.6.1/FCNN4R/man/mlp_set_activation.Rd | 2 FCNN4R-0.6.1/FCNN4R/man/mlp_teach_grprop.Rd | 5 + FCNN4R-0.6.1/FCNN4R/man/mlp_teach_sa.Rd | 7 +- FCNN4R-0.6.1/FCNN4R/src/Makevars | 2 FCNN4R-0.6.1/FCNN4R/src/Makevars.win | 2 FCNN4R-0.6.1/FCNN4R/src/dataset.cpp | 3 - FCNN4R-0.6.1/FCNN4R/src/fcnn/activation.h | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/error.h | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/export.cpp | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/export.h | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/fcnncfg.R.h |only FCNN4R-0.6.1/FCNN4R/src/fcnn/fcnncfg.h |only FCNN4R-0.6.1/FCNN4R/src/fcnn/level1.h | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/level1_impl.h | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/level2.cpp | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/level2.h | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/level3.cpp | 16 ----- FCNN4R-0.6.1/FCNN4R/src/fcnn/level3.h | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/report.cpp | 10 +-- FCNN4R-0.6.1/FCNN4R/src/fcnn/report.h | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/struct.cpp | 26 ++++++--- FCNN4R-0.6.1/FCNN4R/src/fcnn/struct.h | 2 FCNN4R-0.6.1/FCNN4R/src/fcnn/utils.cpp | 10 +-- FCNN4R-0.6.1/FCNN4R/src/fcnn/utils.h | 2 FCNN4R-0.6.1/FCNN4R/src/interface.cpp | 2 38 files changed, 156 insertions(+), 143 deletions(-)
Title: Modelling Spatial Variation in Disease Risk for Areal Data
Description: Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.
Author: Patrick Brown <patrick.brown@utoronto.ca>
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between diseasemapping versions 1.2.7 dated 2015-11-09 and 1.4.0 dated 2016-03-07
DESCRIPTION | 17 ++- MD5 | 20 ++-- R/bym.R | 214 +++++++++++++++++++++++++++++++++++++++++++++--- R/cancer-rates.info.R |only build |only data/casedata.RData |binary data/kentucky.RData |binary data/popdata.RData |binary data/referencepop.RData |binary inst/doc |only tests/bym.R | 18 +--- vignettes |only 12 files changed, 233 insertions(+), 36 deletions(-)
More information about diseasemapping at CRAN
Permanent link
Title: Tools for Storing, Restoring and Searching for R Objects
Description: Data exploration and modelling is a process in which a lot of data
artifacts are produced. Artifacts like: subsets, data aggregates, plots,
statistical models, different versions of data sets and different versions
of results. The more projects we work with the more artifacts are produced
and the harder it is to manage these artifacts. Archivist helps to store
and manage artifacts created in R. Archivist allows you to store selected
artifacts as a binary files together with their metadata and relations.
Archivist allows to share artifacts with others, either through shared
folder or github. Archivist allows to look for already created artifacts by
using it's class, name, date of the creation or other properties. Makes it
easy to restore such artifacts. Archivist allows to check if new artifact
is the exact copy that was produced some time ago. That might be useful
either for testing or caching.
Author: Przemyslaw Biecek [aut, cre],
Marcin Kosinski [aut],
Witold Chodor [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between archivist versions 2.0.2 dated 2016-03-04 and 2.0.3 dated 2016-03-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NAMESPACE | 1 + R/archivist-package.R | 1 + R/restoreLibraries.R | 17 ++++++++++------- 5 files changed, 19 insertions(+), 14 deletions(-)
Title: Plant Root System Architecture Analysis Using DART and RSML
Files
Description: Analysis of complex plant root system architectures (RSA) using the output files created by Data Analysis of Root Tracings (DART), an open-access software dedicated to the study of plant root architecture and development across time series (Le Bot et al (2010) "DART: a software to analyse root system architecture and development from captured images", Plant and Soil, <DOI:10.1007/s11104-009-0005-2>), and RSA data encoded with the Root System Markup Language (RSML) (Lobet et al (2015) "Root System Markup Language: toward a unified root architecture description language", Plant Physiology, <DOI:10.1104/pp.114.253625>). More information can be found in Delory et al (2016) "archiDART: an R package for the automated computation of plant root architectural traits", Plant and Soil, <DOI:10.1007/s11104-015-2673-4>.
Author: Benjamin M Delory, Caroline Baudson, Yves Brostaux, Guillaume Lobet, Patrick du Jardin, Loic Pages, Pierre Delaplace
Maintainer: Benjamin M Delory <Benjamin.Delory@leuphana.de>
Diff between archiDART versions 1.3 dated 2016-03-06 and 1.4 dated 2016-03-07
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Sparklines and Graphical Tables for TeX and HTML
Description: Create sparklines and graphical tables for documents and websites.
Author: Alexander Kowarik, Bernhard Meindl, Matthias Templ
Maintainer: Alexander Kowarik <alexander.kowarik@statistik.gv.at>
Diff between sparkTable versions 1.1.0 dated 2015-11-11 and 1.2.0 dated 2016-03-07
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/methods.r | 10 +++++----- 3 files changed, 11 insertions(+), 11 deletions(-)
Title: Semantically Rich I/O for the 'NeXML' Format
Description: Provides access to phyloinformatic data in 'NeXML' format. The
package should add new functionality to R such as the possibility to
manipulate 'NeXML' objects in more various and refined way and compatibility
with 'ape' objects.
Author: Carl Boettiger [cre, aut],
Scott Chamberlain [aut],
Hilmar Lapp [aut],
Kseniia Shumelchyk [aut],
Rutger Vos [aut]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between RNeXML versions 2.0.5 dated 2015-12-30 and 2.0.6 dated 2016-03-07
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 5 +++++ R/nexml_read.R | 2 ++ R/nexml_write.R | 2 +- man/nexml_read.Rd | 2 ++ man/nexml_write.Rd | 2 +- 7 files changed, 21 insertions(+), 12 deletions(-)
Title: Mark-Recapture Analysis for Survival and Abundance Estimation
Description: Functions for fitting various models to capture-recapture data
including fixed and mixed-effects Cormack-Jolly-Seber(CJS) for survival
estimation and POPAN structured Jolly-Seber models for abundance
estimation. Includes a CJS models that concurrently estimates and corrects
for tag loss. Hidden Markov model (HMM) implementations of CJS and
multistate models with and without state uncertainty.
Author: Jeff Laake <jeff.laake@noaa.gov>, Devin Johnson
<devin.johnson@noaa.gov>, Paul Conn <paul.conn@noaa.gov>
Maintainer: Jeff Laake <Jeff.Laake@noaa.gov>
Diff between marked versions 1.1.10 dated 2015-08-20 and 1.1.11 dated 2016-03-07
DESCRIPTION | 14 ++- MD5 | 152 ++++++++++++++++++++--------------------- NAMESPACE | 3 NEWS | 32 ++++++++ R/cjs.R | 28 +++++-- R/create.dm.R | 3 R/crm.R | 8 +- R/crm.wrapper.R | 36 +++++++-- R/mixed.model.r | 18 ++-- R/proc.formula.r | 3 R/set.initial.r | 1 build/vignette.rds |binary inst/cjs.tpl | 6 + inst/doc/markedVignette.R | 28 +++---- inst/doc/markedVignette.Rnw | 2 inst/doc/markedVignette.pdf |binary man/HMMLikelihood.Rd | 5 - man/Phi.mean.Rd | 2 man/R_HMMLikelihood.Rd | 2 man/backward_prob.Rd | 2 man/cjs.Rd | 2 man/cjs.accumulate.Rd | 2 man/cjs.hessian.Rd | 2 man/cjs.initial.Rd | 2 man/cjs.lnl.Rd | 96 ++++++++++++------------- man/cjs_delta.Rd | 4 - man/cjs_gamma.Rd | 2 man/coef.crm.Rd | 2 man/compute.real.Rd | 8 +- man/compute_matrices.Rd | 2 man/convert.link.to.real.Rd | 2 man/create.dm.Rd | 6 - man/create.dmdf.Rd | 54 +++++++------- man/create.fixed.matrix.Rd | 2 man/create.links.Rd | 2 man/crm.Rd | 16 ++-- man/crm.wrapper.Rd | 10 +- man/deriv_inverse.link.Rd | 2 man/dipper.Rd | 2 man/fix.parameters.Rd | 2 man/function.wrapper.Rd | 4 - man/global_decode.Rd | 2 man/hmmDemo.Rd | 4 - man/inverse.link.Rd | 2 man/js.Rd | 2 man/js.accumulate.Rd | 2 man/js.hessian.Rd | 2 man/js.lnl.Rd | 4 - man/local_decode.Rd | 2 man/make.design.data.Rd | 6 - man/merge_design.covariates.Rd | 4 - man/mixed.model.admb.Rd | 8 +- man/mscjs.Rd | 2 man/mstrata.Rd | 4 - man/mvms_design_data.Rd | 3 man/mvms_dmat.Rd | 4 - man/omega.Rd | 2 man/predict.crm.Rd | 4 - man/print.crm.Rd | 2 man/print.crmlist.Rd | 2 man/probitCJS.Rd | 28 +++---- man/proc.form.Rd | 8 +- man/process.ch.Rd | 8 +- man/process.data.Rd | 19 ++--- man/resight.matrix.Rd | 6 - man/sealions.Rd | 6 - man/set.fixed.Rd | 4 - man/set.initial.Rd | 2 man/set.scale.Rd | 6 - man/set_mvms.Rd | 12 +-- man/setup.model.Rd | 2 man/setup.parameters.Rd | 2 man/simHMM.Rd | 10 +- man/splitCH.Rd | 8 +- man/tagloss.Rd | 34 ++++----- man/valid.parameters.Rd | 2 vignettes/markedVignette.Rnw | 2 77 files changed, 439 insertions(+), 350 deletions(-)
Title: Item Response Models for Multiple Ratings
Description:
Implements some item response models for multiple
ratings, including the hierarchical rater model,
conditional maximum likelihood estimation of linear
logistic partial credit model and a wrapper function
to the commercial FACETS program.
Author:
Alexander Robitzsch [aut, cre], Jan Steinfeld [aut]
Maintainer:
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between immer versions 0.3-0 dated 2016-01-22 and 0.4-0 dated 2016-03-07
DESCRIPTION | 8 +-- MD5 | 93 ++++++++++++++++++++++------------------ NAMESPACE | 66 +++++++++++++++------------- R/agree_aicken.R |only R/anova_immer.R | 5 +- R/immer_FACETS.R | 2 R/immer_HRM.R | 2 R/immer_agree2.R |only R/immer_cml.R | 2 R/immer_collect_traces.R | 10 ++-- R/immer_identifiers_relabel.R | 4 - R/immer_install.R | 2 R/immer_mcmc_draw_variance.R | 2 R/immer_reshape_wideformat.R | 5 +- R/immer_unique_patterns.R |only R/inits_theta_1dim.R | 4 - R/lc2_agreement.R |only R/logLik.lc2_agreement.R |only R/loglik_HRM.R | 2 R/lpcm_inits.R | 3 - R/plot.immer_HRM.R | 2 R/probs2logits.R |only R/rtrnorm.R | 8 +-- R/sampling_hrm_a.R | 12 +++-- R/sampling_hrm_b.R | 16 +++--- R/sampling_hrm_mu_theta_1dim.R | 4 - R/sampling_hrm_phi.R | 12 ++--- R/sampling_hrm_psi.R | 12 ++--- R/sampling_hrm_theta_1dim.R | 8 +-- R/sampling_hrm_xi.R | 2 R/summary.immer_HRM.R | 2 R/summary.immer_agree2.R |only R/summary.immer_cml.R | 2 R/summary.lc2_agreement.R |only R/zzz.R | 4 - data/data.immer01a.rda |binary data/data.immer01b.rda |binary data/data.immer02.rda |binary data/data.immer03.rda |binary data/data.immer04a.rda |binary data/data.immer04b.rda |binary data/data.immer05.rda |binary data/data.immer06.rda |binary data/data.immer07.rda |binary data/data.immer08.rda |only inst/NEWS | 20 ++++++++ man/data.immer.Rd | 13 +++++ man/immer-package.Rd | 2 man/immer_agree2.Rd |only man/immer_cml.Rd | 4 - man/immer_reshape_wideformat.Rd | 4 - man/immer_unique_patterns.Rd |only man/lc2_agreement.Rd |only man/probs2logits.Rd |only 54 files changed, 197 insertions(+), 140 deletions(-)
Title: Forecasting Time Series by Theta Models
Description: Routines for forecasting univariate time series using Theta Models. Contains several cross-validation routines.
Author: Jose Augusto Fiorucci, Francisco Louzada and Bao Yiqi
Maintainer: Jose Augusto Fiorucci <jafiorucci@gmail.com>
Diff between forecTheta versions 2.0 dated 2016-03-02 and 2.1 dated 2016-03-07
ChangeLog | 11 +++++++++-- DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/crossValidationFunctions.R | 2 +- R/forecastFunctions.R | 14 +++++++++----- man/crossValidationFunctions.Rd | 17 ++++++++--------- man/errorMetricFunctions.Rd | 12 ++++++------ man/expSmoot.Rd | 2 +- man/forecTheta-package.Rd | 12 ++++++------ man/otm.arXiv.Rd | 7 +++---- man/plot.thetaModel.Rd | 4 ++-- man/thetaModels.Rd | 19 +++++++++++-------- 12 files changed, 71 insertions(+), 59 deletions(-)
Title: Computational Methods for Immune Cell-Type Subsets
Description: Provided are Computational methods for Immune Cell-type Subsets, including:(1) DCQ (Digital Cell Quantifier) to infer global dynamic changes in immune cell quantities within a complex tissue; and (2) VoCAL (Variation of Cell-type Abundance Loci) a deconvolution-based method that utilizes transcriptome data to infer the quantities of immune-cell types, and then uses these quantitative traits to uncover the underlying DNA loci.
Author: Yael Steuerman [aut, cre],
Irit Gat-Viks [aut]
Maintainer: Yael Steuerman <yaelsteu@mail.tau.ac.il>
Diff between ComICS versions 1.0.2 dated 2016-01-28 and 1.0.3 dated 2016-03-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/IterativeFilteration.R | 4 ++-- data/vocalEx.RData |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Causal Inference Test
Description: A likelihood-based hypothesis testing approach is implemented for assessing causal mediation. For example, it could be used to test for mediation of a known causal association between a DNA variant, the 'instrumental variable', and a clinical outcome or phenotype by gene expression or DNA methylation, the potential mediator. Another example would be testing mediation of the effect of a drug on a clinical outcome by the molecular target. The hypothesis test generates a p-value or permutation-based FDR value with confidence intervals to quantify uncertainty in the causal inference. The outcome can be represented by either a continuous or binary variable, the potential mediator is continuous, and the instrumental variable can be continuous or binary and is not limited to a single variable but may be a design matrix representing multiple variables.
Author: Joshua Millstein
Maintainer: Joshua Millstein <joshua.millstein@usc.edu>
Diff between cit versions 1.9 dated 2016-01-10 and 2.0 dated 2016-03-07
cit-1.9/cit/src/citconlog2_perm_v5.cpp |only cit-2.0/cit/DESCRIPTION | 8 ++--- cit-2.0/cit/MD5 | 19 ++++++------ cit-2.0/cit/R/C_CIT_V12.R | 49 ++++++++++++++++++--------------- cit-2.0/cit/man/cit-package.Rd | 5 ++- cit-2.0/cit/man/cit.bp.Rd | 1 cit-2.0/cit/man/cit.cp.Rd | 1 cit-2.0/cit/man/fdr.cit.Rd | 25 ++++++++++++---- cit-2.0/cit/man/fdr.od.Rd | 15 ++++++---- cit-2.0/cit/man/iuq.Rd | 2 - cit-2.0/cit/src/citconlog3_perm_v5.cpp | 8 +++-- 11 files changed, 80 insertions(+), 53 deletions(-)
Title: (Robust) Canonical Correlation Analysis via Projection Pursuit
Description: Canonical correlation analysis and maximum correlation via
projection pursuit, as well as fast implementations of correlation
estimators, with a focus on robust and non-parametric methods.
Author: Andreas Alfons [aut, cre],
David Simcha [ctb]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between ccaPP versions 0.3.1 dated 2015-11-11 and 0.3.2 dated 2016-03-07
DESCRIPTION | 13 +++++++------ MD5 | 23 +++++++++++++++-------- NEWS | 7 +++++++ R/maxCor.R | 9 +++++++++ R/permTest.R | 11 ++++++++--- build/partial.rdb |binary build/vignette.rds |only inst |only man/ccaPP-package.Rd | 9 +++++++++ man/maxCorGrid.Rd | 9 +++++++++ man/permTest.Rd | 11 ++++++++--- vignettes |only 12 files changed, 72 insertions(+), 20 deletions(-)
Title: Tools for Easily Combining and Cleaning Data Sets
Description: Tools for combining and cleaning data sets, particularly
with grouped and time series data.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between DataCombine versions 0.2.18 dated 2015-12-24 and 0.2.19 dated 2016-03-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 8 ++++++++ R/FillIn.R | 6 ++++++ R/utils.R | 2 +- README.md | 4 ++-- 6 files changed, 26 insertions(+), 12 deletions(-)
Title: A Visual Tool for Behaviour Analysis
Description: A graphical tool designed to visualize and to give an overview of behavioural observations realized on individuals or groups. ViSiElse allows visualization of raw data during experimental observations of the realization of a procedure. It graphically presents an overview of individuals and group actions usually acquired from timestamps during video recorded sessions. Options of the package allow adding graphical information as statistical indicators (mean, standard deviation, quantile or statistical test) but also for each action green or black zones providing visual information about the accuracy of the realized actions.
Author: Nastasia Fouret [aut, cre, cph],
Mederic Descoins [aut, cph],
CEPOI - EA 7388 [cph]
Maintainer: Nastasia Fouret <nastasia.fouret@chu-reunion.fr>
Diff between ViSiElse versions 1.0.0 dated 2016-01-12 and 1.0.1 dated 2016-03-07
DESCRIPTION | 8 +- MD5 | 54 ++++++++-------- NAMESPACE | 2 R/ViSibook.r | 5 - data/intubation.rda |binary inst/doc/example_intubation.R | 13 +--- inst/doc/example_intubation.Rmd | 13 +--- inst/doc/example_intubation.html | 39 +++++------- inst/doc/introduction_ViSiElse.html | 87 +++++++++++++-------------- man/ConvertFromViSibook-ViSibook-methods.Rd | 2 man/ConvertoViSibook.Rd | 4 - man/ViSiElse.Rd | 38 +++++------ man/ViSibook-class.Rd | 14 ++-- man/ViSigrid-class.Rd | 6 - man/buildViSiGrid.Rd | 90 ++++++++++++++-------------- man/changeShoworder-ViSibook-methods.Rd | 2 man/dim-ViSibook-methods.Rd | 4 - man/get-ViSibook-methods.Rd | 2 man/initialize-ViSibook-methods.Rd | 2 man/intubation.Rd | 8 +- man/plot-ViSibook-methods.Rd | 4 - man/plot-ViSigrid-methods.Rd | 4 - man/print-ViSibook-methods.Rd | 4 - man/set-ViSibook-methods.Rd | 2 man/show-ViSibook-methods.Rd | 2 man/show-ViSigrid-methods.Rd | 2 man/summary-ViSigrid-methods.Rd | 2 vignettes/example_intubation.Rmd | 13 +--- 28 files changed, 211 insertions(+), 215 deletions(-)
Title: Fitting Semi-Parametric log-Symmetric Regression Models
Description: Set of tools to fit a semi-parametric regression model suitable for analysis of data sets in which the response variable is continuous, strictly positive, asymmetric and possibly, censored. Under this setup, both the median and the skewness of the response variable distribution are explicitly modeled by using semi-parametric functions, whose non-parametric components may be approximated by natural cubic splines or P-splines. Supported distributions for the model error include log-normal, log-Student-t, log-power-exponential, log-hyperbolic, log-contaminated-normal, log-slash, Birnbaum-Saunders and Birnbaum-Saunders-t distributions.
Author: Luis Hernando Vanegas <hvanegasp@gmail.com> and Gilberto A. Paula
Maintainer: Luis Hernando Vanegas <hvanegasp@gmail.com>
Diff between ssym versions 1.5.4 dated 2015-10-22 and 1.5.5 dated 2016-03-07
DESCRIPTION | 8 ++++---- MD5 | 32 +++++++++++++++++--------------- R/envelope.R | 16 +++++++++------- R/extra.parameter.R | 27 --------------------------- data/Baboons.rda |binary data/Biaxial.rda |binary data/Claims.rda |binary data/Erabbits.rda |binary data/Ovocytes.rda |binary data/Snacks.rda |binary data/Steel.rda |binary data/gdp.rda |binary data/myeloma.rda |only man/myeloma.Rd |only man/ssym-package.Rd | 4 ++-- man/ssym.l.Rd | 27 ++++++++++++++++++++++++++- man/ssym.l2.Rd | 27 +++++++++++++++++++++------ man/ssym.nl.Rd | 17 +++++++++-------- 18 files changed, 88 insertions(+), 70 deletions(-)
Title: Applications of Empirical Dynamic Modeling from Time Series
Description: Contains C++ compiled objects that use time delay embedding to perform state-space reconstruction and nonlinear forecasting and an R interface to those objects using 'Rcpp'. It supports both the simplex projection method from Sugihara & May (1990) <DOI:10.1038/344734a0> and the S-map algorithm in Sugihara (1994) <DOI:10.1098/rsta.1994.0106>. In addition, this package implements convergent cross mapping as described by Sugihara et al. (2012) <DOI:10.1126/science.1227079>.
Author: Hao Ye, Adam Clark, Ethan Deyle
Maintainer: Hao Ye <hye@ucsd.edu>
Diff between rEDM versions 0.4.4 dated 2016-03-05 and 0.4.5 dated 2016-03-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/doc/rEDM_tutorial.html | 14 +++++++------- src/forecast_machine.cpp | 4 ++-- 4 files changed, 16 insertions(+), 16 deletions(-)
Title: Find the Modes and Assess the Modality of Complex and Mixture
Distributions, Especially with Big Datasets
Description: Designed with a dual purpose of
accurately estimating the mode (or modes) as well as characterizing
the modality of data. The specific application area includes complex
or mixture distributions particularly in a big data environment.
The heterogeneous nature of (big) data may require deep introspective
statistical and machine learning techniques, but these statistical tools
often fail when applied without first understanding the data. In small
datasets, this often isn't a big issue, but when dealing with large scale
data analysis or big data thoroughly inspecting each dimension
typically yields an O(n^n-1) problem. As such, dealing with big data
require an alternative toolkit. This package not only identifies the
mode or modes for various data types, it also provides a programmatic
way of understanding the modality (i.e. unimodal, bimodal, etc.) of
a dataset (whether it's big data or not). See
<http://www.sdeevi.com/modes_package> for examples and discussion.
Author: Sathish Deevi [aut, cre],
4D Strategies [aut,own]
Maintainer: Sathish Deevi <SathishCDeevi@gmail.com>
Diff between modes versions 0.6.1 dated 2016-02-06 and 0.7.0 dated 2016-03-07
modes-0.6.1/modes/man/mode.Rd |only modes-0.7.0/modes/DESCRIPTION | 9 +++--- modes-0.7.0/modes/MD5 | 28 +++++++++--------- modes-0.7.0/modes/NAMESPACE | 1 modes-0.7.0/modes/R/Nonparametric_functions.R | 4 +- modes-0.7.0/modes/man/Ashmans_D.Rd | 22 +++++++------- modes-0.7.0/modes/man/amps.Rd | 4 +- modes-0.7.0/modes/man/bimodality_amplitude.Rd | 26 ++++++++--------- modes-0.7.0/modes/man/bimodality_coefficient.Rd | 4 +- modes-0.7.0/modes/man/bimodality_ratio.Rd | 36 ++++++++++++------------ modes-0.7.0/modes/man/bimodality_separation.Rd | 20 ++++++------- modes-0.7.0/modes/man/kurtosis.Rd | 4 +- modes-0.7.0/modes/man/modes-package.Rd | 1 modes-0.7.0/modes/man/modes.Rd |only modes-0.7.0/modes/man/nth_highest.Rd | 4 +- modes-0.7.0/modes/man/skewness.Rd | 6 ++-- 16 files changed, 85 insertions(+), 84 deletions(-)
Title: Multidimensional Item Response Theory
Description: Analysis of dichotomous and polytomous response data using
unidimensional and multidimensional latent trait models under the Item
Response Theory paradigm. Exploratory and confirmatory models can be
estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier analyses are available for modeling item testlets.
Multiple group analysis and mixed effects designs also are available for
detecting differential item and test functioning as well as modelling
item and person covariates.
Author: Phil Chalmers [aut, cre, cph],
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb],
KwonHyun Kim [ctb],
Carl F. Falk [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirt versions 1.15 dated 2016-01-21 and 1.16 dated 2016-03-07
mirt-1.15/mirt/NEWS |only mirt-1.16/mirt/DESCRIPTION | 10 mirt-1.16/mirt/MD5 | 149 +++++----- mirt-1.16/mirt/NAMESPACE | 5 mirt-1.16/mirt/NEWS.md |only mirt-1.16/mirt/R/01-itemclass.R | 4 mirt-1.16/mirt/R/02-item_methods.R | 66 ++-- mirt-1.16/mirt/R/03-estimation.R | 127 ++++---- mirt-1.16/mirt/R/DIF.R | 2 mirt-1.16/mirt/R/Discrete-methods.R | 19 + mirt-1.16/mirt/R/EMstep.group.R | 60 ++-- mirt-1.16/mirt/R/EMstep.utils.R | 155 ++-------- mirt-1.16/mirt/R/LoadPars.R | 17 - mirt-1.16/mirt/R/M2.R | 5 mirt-1.16/mirt/R/MHRM.group.R | 215 +++++++++++--- mirt-1.16/mirt/R/Mixed-methods.R | 80 +++++ mirt-1.16/mirt/R/MultipleGroup-methods.R | 19 + mirt-1.16/mirt/R/PLCI.mirt.R | 147 +-------- mirt-1.16/mirt/R/PrepData.R | 11 mirt-1.16/mirt/R/SE.methods.R | 48 +-- mirt-1.16/mirt/R/SingleGroup-methods.R | 88 +++++ mirt-1.16/mirt/R/areainfo.R |only mirt-1.16/mirt/R/boot.mirt.R | 2 mirt-1.16/mirt/R/calcLogLik.R | 22 + mirt-1.16/mirt/R/createItem.R | 41 ++ mirt-1.16/mirt/R/empirical_plot.R | 17 - mirt-1.16/mirt/R/expected.test.R | 41 ++ mirt-1.16/mirt/R/extract.mirt.R | 5 mirt-1.16/mirt/R/fscores.R | 2 mirt-1.16/mirt/R/fscores.internal.R | 3 mirt-1.16/mirt/R/itemfit.R | 7 mirt-1.16/mirt/R/itemplot.internal.R | 2 mirt-1.16/mirt/R/lagrange.R |only mirt-1.16/mirt/R/mirt-package.R | 8 mirt-1.16/mirt/R/mirt.R | 51 +-- mirt-1.16/mirt/R/mirtCluster.R | 31 -- mirt-1.16/mirt/R/mixedmirt.R | 41 ++ mirt-1.16/mirt/R/model.elements.R | 5 mirt-1.16/mirt/R/personfit.R | 4 mirt-1.16/mirt/R/randef.R | 41 ++ mirt-1.16/mirt/R/simdata.R | 26 + mirt-1.16/mirt/R/testinfo.R | 26 + mirt-1.16/mirt/R/utils.R | 310 ++++++++++++++++----- mirt-1.16/mirt/R/wald.R | 5 mirt-1.16/mirt/README.md | 9 mirt-1.16/mirt/build/vignette.rds |binary mirt-1.16/mirt/man/Bock1997.Rd | 4 mirt-1.16/mirt/man/M2.Rd | 5 mirt-1.16/mirt/man/PLCI.mirt.Rd | 10 mirt-1.16/mirt/man/areainfo.Rd |only mirt-1.16/mirt/man/boot.mirt.Rd | 3 mirt-1.16/mirt/man/coef-method.Rd | 4 mirt-1.16/mirt/man/createItem.Rd | 42 ++ mirt-1.16/mirt/man/empirical_plot.Rd | 9 mirt-1.16/mirt/man/expected.test.Rd | 12 mirt-1.16/mirt/man/extract.mirt.Rd | 1 mirt-1.16/mirt/man/fscores.Rd | 2 mirt-1.16/mirt/man/lagrange.Rd |only mirt-1.16/mirt/man/logLik-method.Rd |only mirt-1.16/mirt/man/mirt.Rd | 53 +-- mirt-1.16/mirt/man/mirtCluster.Rd | 12 mirt-1.16/mirt/man/mixedmirt.Rd | 26 + mirt-1.16/mirt/man/numerical_deriv.Rd |only mirt-1.16/mirt/man/personfit.Rd | 2 mirt-1.16/mirt/man/simdata.Rd | 26 + mirt-1.16/mirt/man/summary-method.Rd | 9 mirt-1.16/mirt/man/testinfo.Rd | 14 mirt-1.16/mirt/man/vcov-method.Rd |only mirt-1.16/mirt/src/Estep.cpp | 90 +++--- mirt-1.16/mirt/src/Estep.h | 9 mirt-1.16/mirt/src/dpars.cpp | 137 +++++++-- mirt-1.16/mirt/tests/tests/test-00-basics.R | 6 mirt-1.16/mirt/tests/tests/test-01-mirtOne.R | 10 mirt-1.16/mirt/tests/tests/test-03-bfactor.R | 2 mirt-1.16/mirt/tests/tests/test-04-multipleGroup.R | 6 mirt-1.16/mirt/tests/tests/test-05-confmirtOne.R | 4 mirt-1.16/mirt/tests/tests/test-07-mixedmirt.R | 6 mirt-1.16/mirt/tests/tests/test-08-createItem.R | 2 mirt-1.16/mirt/tests/tests/test-10-extras.R | 8 mirt-1.16/mirt/tests/tests/test-11-discrete.R | 2 80 files changed, 1543 insertions(+), 899 deletions(-)
Title: Data Package Manager for R
Description: Create, install, and summarise data packages that follow
the Open Knowledge Foundation's Data Package Protocol.
Author: Christopher Gandrud [aut, cre],
Yann-Ael Le Borgne [ctb]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between dpmr versions 0.1.7-1 dated 2015-05-22 and 0.1.9 dated 2016-03-07
DESCRIPTION | 17 ++++++++++------- MD5 | 24 ++++++++++++------------ NAMESPACE | 5 ++++- NEWS | 13 +++++++++++++ R/datapackage_init.R | 40 +++++++++++++++++++++++++++------------- R/datapackage_install.R | 1 + R/github-utils.R | 2 ++ R/utils.R | 16 ++++++++-------- README.md | 5 ++++- man/datapackage_info.Rd | 3 ++- man/datapackage_init.Rd | 16 ++++++++++------ man/datapackage_install.Rd | 2 +- man/meta_template.Rd | 2 +- 13 files changed, 95 insertions(+), 51 deletions(-)
Title: Tools for Descriptive Statistics
Description: A collection of basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'camel style' was consequently applied to functions borrowed from contributed R packages as well.
Author: Andri Signorell. Includes R source code and/or documentation previously published by (in alphabetical order): Ken Aho, Nanina Anderegg, Tomas Aragon, Antti Arppe, Adrian Baddeley, Ben Bolker, Frederico Caeiro, Stephane Champely, Daniel Chessel, Leanne Chhay, Clint Cummins, Michael Dewey, Harold C. Doran, Stephane Dray, Charles Dupont, Dirk Eddelbuettel, Jeff Enos, Claus Ekstrom, Martin Elff, Kamil Erguler, Richard W. Farebrother, John Fox, Michael Friendly, Tal Galili, Matthias Gamer, Joseph L. Gastwirth, Yulia R. Gel, Juergen Gross, Gabor Grothendieck, Frank E. Harrell Jr, Richard Heiberger, Michael Hoehle, Christian W. Hoffmann, Torsten Hothorn, Markus Huerzeler, Wallace W. Hui, Pete Hurd, Rob J. Hyndman, Pablo J. Villacorta Iglesias, Matthias Kohl, Mikko Korpela, Max Kuhn, Detlew Labes, Friederich Leisch, Jim Lemon, Dong Li, Martin Maechler, Arni Magnusson, Daniel Malter, George Marsaglia, John Marsaglia, Alina Matei, David Meyer, Weiwen Miao, Giovanni Millo, Yongyi Min, David Mitchell, Markus Naepflin, Daniel Navarro, Klaus Nordhausen, Derek Ogle, Hong Ooi, Nick Parsons, Sandrine Pavoine, Tony Plate, Roland Rapold, William Revelle, Tyler Rinker, Brian D. Ripley, Caroline Rodriguez, Venkatraman E. Seshan, Greg Snow, Michael Smithson, Werner A. Stahel, Mark Stevenson, Terry Therneau, Yves Tille, Adrian Trapletti, Kevin Ushey, Jeremy VanDerWal, Bill Venables, John Verzani, Gregory R. Warnes, Stefan Wellek, Rand R. Wilcox, Peter Wolf, Daniel Wollschlaeger, Thomas Yee, Achim Zeileis
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.15 dated 2015-10-25 and 0.99.16 dated 2016-03-07
DescTools-0.99.15/DescTools/R/FastDesc.R |only DescTools-0.99.15/DescTools/man/Desc.Date.Rd |only DescTools-0.99.15/DescTools/man/Desc.data.frame.Rd |only DescTools-0.99.15/DescTools/man/Desc.factor.Rd |only DescTools-0.99.15/DescTools/man/Desc.flags.Rd |only DescTools-0.99.15/DescTools/man/Desc.formula.Rd |only DescTools-0.99.15/DescTools/man/Desc.integer.Rd |only DescTools-0.99.15/DescTools/man/Desc.logical.Rd |only DescTools-0.99.15/DescTools/man/Desc.numeric.Rd |only DescTools-0.99.15/DescTools/man/Desc.table.Rd |only DescTools-0.99.15/DescTools/man/DescWrd.Rd |only DescTools-0.99.15/DescTools/man/GoodmanKruskalTauA.Rd |only DescTools-0.99.15/DescTools/man/PlotDesc.Rd |only DescTools-0.99.15/DescTools/man/RoundM.Rd |only DescTools-0.99.15/DescTools/man/WrdInsTab.Rd |only DescTools-0.99.15/DescTools/man/WrdSetFont.Rd |only DescTools-0.99.16/DescTools/DESCRIPTION | 14 DescTools-0.99.16/DescTools/MD5 | 156 DescTools-0.99.16/DescTools/NAMESPACE | 138 DescTools-0.99.16/DescTools/NEWS | 88 DescTools-0.99.16/DescTools/R/Desc.R |only DescTools-0.99.16/DescTools/R/DescTools.r |13804 ++------------- DescTools-0.99.16/DescTools/R/StatsAndCIs.r |only DescTools-0.99.16/DescTools/R/Tables.r | 18 DescTools-0.99.16/DescTools/R/Tests.r |only DescTools-0.99.16/DescTools/data/cards.rda |only DescTools-0.99.16/DescTools/data/roulette.rda |only DescTools-0.99.16/DescTools/data/tarot.rda |only DescTools-0.99.16/DescTools/inst/doc/TablesInR.pdf |binary DescTools-0.99.16/DescTools/man/AddMonths.Rd | 42 DescTools-0.99.16/DescTools/man/AddMonthsYM.Rd |only DescTools-0.99.16/DescTools/man/AllDuplicated.Rd | 4 DescTools-0.99.16/DescTools/man/AscToChar.Rd | 15 DescTools-0.99.16/DescTools/man/BarnardTest.Rd | 14 DescTools-0.99.16/DescTools/man/BartelsRankTest.Rd | 37 DescTools-0.99.16/DescTools/man/BinTree.Rd | 42 DescTools-0.99.16/DescTools/man/BreuschGodfreyTest.Rd |only DescTools-0.99.16/DescTools/man/ChooseColorDlg.Rd | 2 DescTools-0.99.16/DescTools/man/ConDisPairs.Rd | 14 DescTools-0.99.16/DescTools/man/Conf.Rd | 73 DescTools-0.99.16/DescTools/man/DatasetsforSimulation.Rd |only DescTools-0.99.16/DescTools/man/DateFunctions.Rd | 6 DescTools-0.99.16/DescTools/man/Desc.Rd | 397 DescTools-0.99.16/DescTools/man/DescTools-package.Rd | 34 DescTools-0.99.16/DescTools/man/DoCall.Rd | 3 DescTools-0.99.16/DescTools/man/DunnTest.Rd | 16 DescTools-0.99.16/DescTools/man/DurbinWatsonTest.Rd | 11 DescTools-0.99.16/DescTools/man/FctArgs.Rd | 12 DescTools-0.99.16/DescTools/man/Format.Rd | 114 DescTools-0.99.16/DescTools/man/GCD.Rd | 4 DescTools-0.99.16/DescTools/man/GetNewWrd.Rd | 16 DescTools-0.99.16/DescTools/man/GoodmanKruskalGamma.Rd | 18 DescTools-0.99.16/DescTools/man/GoodmanKruskalTau.Rd |only DescTools-0.99.16/DescTools/man/ICC.Rd | 17 DescTools-0.99.16/DescTools/man/IsDichotomous.Rd | 4 DescTools-0.99.16/DescTools/man/KendallTauA.Rd |only DescTools-0.99.16/DescTools/man/KendallTauB.Rd | 19 DescTools-0.99.16/DescTools/man/KendallW.Rd | 12 DescTools-0.99.16/DescTools/man/Lambda.Rd | 17 DescTools-0.99.16/DescTools/man/Lc.Rd | 39 DescTools-0.99.16/DescTools/man/Lookup.Rd |only DescTools-0.99.16/DescTools/man/MeanCI.Rd | 32 DescTools-0.99.16/DescTools/man/MedianCI.Rd | 16 DescTools-0.99.16/DescTools/man/PalDescTools.Rd | 11 DescTools-0.99.16/DescTools/man/PlotCorr.Rd | 24 DescTools-0.99.16/DescTools/man/PlotDot.Rd | 30 DescTools-0.99.16/DescTools/man/PlotFaces.Rd | 13 DescTools-0.99.16/DescTools/man/PlotFdist.Rd | 60 DescTools-0.99.16/DescTools/man/PlotLinesA.Rd | 36 DescTools-0.99.16/DescTools/man/PlotMiss.Rd | 6 DescTools-0.99.16/DescTools/man/PlotRCol.Rd | 15 DescTools-0.99.16/DescTools/man/PlotWeb.Rd | 33 DescTools-0.99.16/DescTools/man/RoundTo.Rd |only DescTools-0.99.16/DescTools/man/RunsTest.Rd | 32 DescTools-0.99.16/DescTools/man/SomersDelta.Rd | 27 DescTools-0.99.16/DescTools/man/Stamp.Rd | 4 DescTools-0.99.16/DescTools/man/StrAlign.Rd | 29 DescTools-0.99.16/DescTools/man/StrRight.Rd | 15 DescTools-0.99.16/DescTools/man/StrTrim.Rd | 7 DescTools-0.99.16/DescTools/man/StrVal.Rd | 6 DescTools-0.99.16/DescTools/man/StuartTauC.Rd | 22 DescTools-0.99.16/DescTools/man/TOne.Rd | 38 DescTools-0.99.16/DescTools/man/ToWide.Rd | 23 DescTools-0.99.16/DescTools/man/ToWrd.Rd |only DescTools-0.99.16/DescTools/man/Trim.Rd | 14 DescTools-0.99.16/DescTools/man/VarCI.Rd | 5 DescTools-0.99.16/DescTools/man/VarTest.Rd |only DescTools-0.99.16/DescTools/man/WrdCaption.Rd | 15 DescTools-0.99.16/DescTools/man/WrdFont.Rd |only DescTools-0.99.16/DescTools/man/WrdInsertBookmark.Rd | 4 DescTools-0.99.16/DescTools/man/WrdParagraphFormat.Rd |only DescTools-0.99.16/DescTools/man/WrdStyle.Rd |only DescTools-0.99.16/DescTools/man/WrdTable.Rd | 67 DescTools-0.99.16/DescTools/man/WrdText.Rd | 26 DescTools-0.99.16/DescTools/man/ZTest.Rd | 33 DescTools-0.99.16/DescTools/man/ZeroIfNA.Rd | 2 96 files changed, 3550 insertions(+), 12295 deletions(-)
Title: Conformal Prediction for Regression and Classification
Description: Implementation of conformal prediction using caret models for classification and regression.
Author: Isidro Cortes <isidrolauscher@gmail.com>
Maintainer: Isidro Cortes <isidrolauscher@gmail.com>
Diff between conformal versions 0.1 dated 2015-01-21 and 0.2 dated 2016-03-07
DESCRIPTION | 14 +++--- MD5 | 22 +++++---- NAMESPACE | 32 ++++++++++---- R/ConformalClassification.R | 4 - R/ConformalRegression.R | 4 - R/misc.R | 6 +- data/LogS.RData |binary man/ConformalRegression.Rd | 5 ++ man/conformal.Rd | 26 +++++++---- man/figures/classificationScheme.pdf |binary man/figures/classificationScheme.svg | 78 +++++++++++++++++++++-------------- man/figures/regressionScheme.pdf |only man/figures/regressionScheme.svg |only 13 files changed, 119 insertions(+), 72 deletions(-)
Title: Quantile Regression for Random Variables on the Unit Interval
Description: Employs a two-parameter family of
distributions for modelling random variables on the (0, 1) interval by
applying the cumulative distribution function (cdf) of one parent
distribution to the quantile function of another.
Author: Yiyun Shou [aut, cre],
Michael Smithson [aut]
Maintainer: Yiyun Shou <yiyun.shou@anu.edu.au>
Diff between cdfquantreg versions 1.0.2 dated 2016-02-06 and 1.0.3 dated 2016-03-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 7 +++++++ R/cdfquantreg.R | 2 +- R/qrPlot.R | 11 +++++------ build/vignette.rds |binary 6 files changed, 22 insertions(+), 16 deletions(-)
Title: Assertions to Check Types of Variables
Description: A set of predicates and assertions for checking the types of
variables. This is mainly for use by other package developers who want to
include run-time testing features in their own packages. End-users will
usually want to use assertive directly.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.types versions 0.0-1 dated 2015-10-06 and 0.0-2 dated 2016-03-07
DESCRIPTION | 24 MD5 | 77 +-- NAMESPACE | 13 NEWS | 3 R/assert-is-a-type.R | 195 ++++--- R/assert-is-formula.R |only R/assert-is-type-base.R | 713 ++++++++++++++-------------- R/is-a-type.R | 196 ++++--- R/is-formula.R |only R/is-type-base.R | 997 ++++++++++++++++++++-------------------- README.md | 120 ++-- man/assert_is_all_of.Rd | 2 man/is_array.Rd | 4 man/is_character.Rd | 13 man/is_class.Rd | 6 man/is_complex.Rd | 6 man/is_data.frame.Rd | 8 man/is_data.table.Rd | 6 man/is_date.Rd | 6 man/is_environment.Rd | 4 man/is_factor.Rd | 4 man/is_formula.Rd |only man/is_function.Rd | 6 man/is_inherited_from.Rd | 5 man/is_integer.Rd | 8 man/is_language.Rd | 6 man/is_leaf.Rd | 4 man/is_list.Rd | 4 man/is_logical.Rd | 6 man/is_numeric.Rd | 36 + man/is_qr.Rd | 4 man/is_raster.Rd | 8 man/is_raw.Rd | 8 man/is_relistable.Rd | 6 man/is_s4.Rd | 4 man/is_table.Rd | 4 man/is_tbl.Rd | 6 man/is_try_error.Rd | 6 man/is_ts.Rd | 4 tests/testthat.R | 6 tests/testthat/test-is-a-type.R | 17 41 files changed, 1324 insertions(+), 1221 deletions(-)
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