Title: Taxonomic Information from Around the Web
Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
such as verifying species names, and getting taxonomic 'hierarchies'.
Author: Scott Chamberlain [aut, cre],
Eduard Szoecs [aut],
Zachary Foster [aut],
Carl Boettiger [aut],
Karthik Ram [aut],
Ignasi Bartomeus [aut],
John Baumgartner [aut],
James O'Donnell [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between taxize versions 0.7.0 dated 2015-11-30 and 0.7.4 dated 2016-03-08
taxize-0.7.0/taxize/man/get_genes-deprecated.Rd |only taxize-0.7.0/taxize/man/get_genes_avail-deprecated.Rd |only taxize-0.7.0/taxize/man/get_seqs-deprecated.Rd |only taxize-0.7.4/taxize/DESCRIPTION | 20 taxize-0.7.4/taxize/LICENSE | 2 taxize-0.7.4/taxize/MD5 | 339 +++--- taxize-0.7.4/taxize/NAMESPACE | 26 taxize-0.7.4/taxize/NEWS.md |only taxize-0.7.4/taxize/R/apg.R | 4 taxize-0.7.4/taxize/R/children.R | 4 taxize-0.7.4/taxize/R/classification.R | 86 - taxize-0.7.4/taxize/R/col_children.R | 57 - taxize-0.7.4/taxize/R/col_classification.R | 59 - taxize-0.7.4/taxize/R/col_downstream.R | 97 - taxize-0.7.4/taxize/R/col_search.R | 23 taxize-0.7.4/taxize/R/comm2sci.R | 8 taxize-0.7.4/taxize/R/downstream.R | 80 - taxize-0.7.4/taxize/R/eol_dataobjects.R | 21 taxize-0.7.4/taxize/R/eol_hierarchy.R | 34 taxize-0.7.4/taxize/R/eol_invasive.R | 128 -- taxize-0.7.4/taxize/R/eol_pages.R | 42 taxize-0.7.4/taxize/R/eol_search.R | 3 taxize-0.7.4/taxize/R/eubon.R | 6 taxize-0.7.4/taxize/R/fungorum.R | 50 - taxize-0.7.4/taxize/R/gbif_downstream.R | 33 taxize-0.7.4/taxize/R/gbif_name_usage.R |only taxize-0.7.4/taxize/R/gbif_parse.R | 2 taxize-0.7.4/taxize/R/genbank2uid.R | 11 taxize-0.7.4/taxize/R/get_boldid.R | 4 taxize-0.7.4/taxize/R/get_colid.R | 6 taxize-0.7.4/taxize/R/get_eolid.R | 51 - taxize-0.7.4/taxize/R/get_gbifid.R | 16 taxize-0.7.4/taxize/R/get_tsn.R | 13 taxize-0.7.4/taxize/R/get_ubioid.R | 2 taxize-0.7.4/taxize/R/get_uid.R | 40 taxize-0.7.4/taxize/R/getkey.R |only taxize-0.7.4/taxize/R/gisd_isinvasive.R | 64 - taxize-0.7.4/taxize/R/gni_details.R | 3 taxize-0.7.4/taxize/R/gni_parse.R | 2 taxize-0.7.4/taxize/R/gni_search.R | 3 taxize-0.7.4/taxize/R/gnr_resolve.R | 21 taxize-0.7.4/taxize/R/ion.R | 21 taxize-0.7.4/taxize/R/iplant_resolve.R | 2 taxize-0.7.4/taxize/R/ipni_search.R | 2 taxize-0.7.4/taxize/R/itis.R | 382 +++---- taxize-0.7.4/taxize/R/itis_downstream.R | 38 taxize-0.7.4/taxize/R/itis_hierarchy.R | 2 taxize-0.7.4/taxize/R/iucn_id.R | 48 taxize-0.7.4/taxize/R/iucn_summary.R | 143 ++ taxize-0.7.4/taxize/R/lowest_common.R |only taxize-0.7.4/taxize/R/nbn_classification.R | 2 taxize-0.7.4/taxize/R/nbn_search.R | 7 taxize-0.7.4/taxize/R/nbn_synonyms.R | 4 taxize-0.7.4/taxize/R/ncbi_children.R | 6 taxize-0.7.4/taxize/R/ncbi_get_taxon_summary.R | 11 taxize-0.7.4/taxize/R/ncbi_getbyid.R | 50 - taxize-0.7.4/taxize/R/ncbi_getbyname.R | 138 -- taxize-0.7.4/taxize/R/ncbi_search.R | 178 --- taxize-0.7.4/taxize/R/ping.R | 31 taxize-0.7.4/taxize/R/plantminer.R | 2 taxize-0.7.4/taxize/R/sci2comm.R | 8 taxize-0.7.4/taxize/R/scrapenames.r | 4 taxize-0.7.4/taxize/R/synonyms.R | 18 taxize-0.7.4/taxize/R/taxize-package.R | 32 taxize-0.7.4/taxize/R/taxize_ldfast.R |only taxize-0.7.4/taxize/R/tnrs.R | 8 taxize-0.7.4/taxize/R/tnrs_sources.r | 4 taxize-0.7.4/taxize/R/tp_accnames.R | 14 taxize-0.7.4/taxize/R/tp_classification.R | 25 taxize-0.7.4/taxize/R/tp_dist.R | 2 taxize-0.7.4/taxize/R/tp_refs.R | 2 taxize-0.7.4/taxize/R/tp_search.R | 28 taxize-0.7.4/taxize/R/tp_summary.R | 2 taxize-0.7.4/taxize/R/tp_synonyms.R | 2 taxize-0.7.4/taxize/R/tpl_families.r | 16 taxize-0.7.4/taxize/R/tpl_get.r | 11 taxize-0.7.4/taxize/R/upstream.R | 40 taxize-0.7.4/taxize/R/vascan_search.r | 10 taxize-0.7.4/taxize/R/zzz.R | 189 --- taxize-0.7.4/taxize/README.md | 72 - taxize-0.7.4/taxize/data/rank_ref.RData |binary taxize-0.7.4/taxize/inst/CITATION | 8 taxize-0.7.4/taxize/inst/doc/taxize_vignette.Rmd | 491 +++++----- taxize-0.7.4/taxize/inst/doc/taxize_vignette.html | 491 +++++----- taxize-0.7.4/taxize/inst/ignore/nature_serve.R |only taxize-0.7.4/taxize/inst/ignore/taxonid.R |only taxize-0.7.4/taxize/inst/vign/taxize_vignette.md | 491 +++++----- taxize-0.7.4/taxize/man/children.Rd | 4 taxize-0.7.4/taxize/man/col_children.Rd | 13 taxize-0.7.4/taxize/man/col_classification-defunct.Rd | 35 taxize-0.7.4/taxize/man/col_downstream.Rd | 14 taxize-0.7.4/taxize/man/downstream.Rd | 74 - taxize-0.7.4/taxize/man/eol_dataobjects.Rd | 10 taxize-0.7.4/taxize/man/eol_hierarchy-defunct.Rd | 23 taxize-0.7.4/taxize/man/eol_invasive-defunct.Rd | 73 - taxize-0.7.4/taxize/man/eol_pages.Rd | 23 taxize-0.7.4/taxize/man/eubon.Rd | 3 taxize-0.7.4/taxize/man/fungorum.Rd | 4 taxize-0.7.4/taxize/man/gbif_downstream.Rd | 14 taxize-0.7.4/taxize/man/gbif_name_usage.Rd | 2 taxize-0.7.4/taxize/man/get_boldid.Rd | 2 taxize-0.7.4/taxize/man/get_eolid.Rd | 11 taxize-0.7.4/taxize/man/get_genes-defunct.Rd |only taxize-0.7.4/taxize/man/get_genes_avail-defunct.Rd |only taxize-0.7.4/taxize/man/get_seqs-defunct.Rd |only taxize-0.7.4/taxize/man/get_tsn.Rd | 2 taxize-0.7.4/taxize/man/get_ubioid-defunct.Rd | 2 taxize-0.7.4/taxize/man/get_uid.Rd | 6 taxize-0.7.4/taxize/man/getacceptednamesfromtsn.Rd | 7 taxize-0.7.4/taxize/man/getcommentdetailfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getcommonnamesfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getcoremetadatafromtsn.Rd | 4 taxize-0.7.4/taxize/man/getcoveragefromtsn.Rd | 4 taxize-0.7.4/taxize/man/getcredibilityratingfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getcredibilityratings.Rd | 2 taxize-0.7.4/taxize/man/getcurrencyfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getexpertsfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getfullhierarchyfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getfullrecordfromlsid.Rd | 2 taxize-0.7.4/taxize/man/getfullrecordfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getgeographicdivisionsfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getgeographicvalues.Rd | 2 taxize-0.7.4/taxize/man/getglobalspeciescompletenessfromtsn.Rd | 2 taxize-0.7.4/taxize/man/gethierarchydownfromtsn.Rd | 2 taxize-0.7.4/taxize/man/gethierarchyupfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getitisterms.Rd | 2 taxize-0.7.4/taxize/man/getitistermsfromcommonname.Rd | 4 taxize-0.7.4/taxize/man/getitistermsfromscientificname.Rd | 2 taxize-0.7.4/taxize/man/getjurisdictionaloriginfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getkey.Rd | 2 taxize-0.7.4/taxize/man/getlsidfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getothersourcesfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getpublicationsfromtsn.Rd | 2 taxize-0.7.4/taxize/man/getsynonymnamesfromtsn.Rd | 4 taxize-0.7.4/taxize/man/getvernacularlanguages.Rd | 2 taxize-0.7.4/taxize/man/gisd_invasive-defunct.Rd | 43 taxize-0.7.4/taxize/man/itis_downstream.Rd | 18 taxize-0.7.4/taxize/man/itis_searchcommon.Rd | 2 taxize-0.7.4/taxize/man/iucn_id.Rd | 15 taxize-0.7.4/taxize/man/iucn_summary.Rd | 22 taxize-0.7.4/taxize/man/lowest_common.Rd |only taxize-0.7.4/taxize/man/ncbi_getbyid-defunct.Rd | 21 taxize-0.7.4/taxize/man/ncbi_getbyname-defunct.Rd | 30 taxize-0.7.4/taxize/man/ncbi_search-defunct.Rd | 44 taxize-0.7.4/taxize/man/searchbycommonname.Rd | 2 taxize-0.7.4/taxize/man/searchbycommonnamebeginswith.Rd | 2 taxize-0.7.4/taxize/man/searchbycommonnameendswith.Rd | 2 taxize-0.7.4/taxize/man/searchforanymatch.Rd | 4 taxize-0.7.4/taxize/man/searchforanymatchpaged.Rd | 4 taxize-0.7.4/taxize/man/taxize-defunct.Rd | 23 taxize-0.7.4/taxize/man/taxize_ldfast.Rd | 2 taxize-0.7.4/taxize/man/tp_classification-defunct.Rd | 15 taxize-0.7.4/taxize/man/tp_search.Rd | 13 taxize-0.7.4/taxize/man/tpl_families.Rd | 5 taxize-0.7.4/taxize/man/tpl_get.Rd | 4 taxize-0.7.4/taxize/man/upstream.Rd | 32 taxize-0.7.4/taxize/man/vascan_search.Rd | 6 taxize-0.7.4/taxize/tests/testthat/Rplots.pdf |binary taxize-0.7.4/taxize/tests/testthat/test-apgscraping.R | 32 taxize-0.7.4/taxize/tests/testthat/test-classification.R | 28 taxize-0.7.4/taxize/tests/testthat/test-col_downstream.R | 2 taxize-0.7.4/taxize/tests/testthat/test-eol_dataobjects.R | 21 taxize-0.7.4/taxize/tests/testthat/test-eol_pages.R | 15 taxize-0.7.4/taxize/tests/testthat/test-fungorum.R | 16 taxize-0.7.4/taxize/tests/testthat/test-gbif_downstream.R | 8 taxize-0.7.4/taxize/tests/testthat/test-get_ids.R | 2 taxize-0.7.4/taxize/tests/testthat/test-get_tpsid.R | 21 taxize-0.7.4/taxize/tests/testthat/test-get_tsn.R | 4 taxize-0.7.4/taxize/tests/testthat/test-get_uid.R | 2 taxize-0.7.4/taxize/tests/testthat/test-gni_search.R | 6 taxize-0.7.4/taxize/tests/testthat/test-gnr_resolve.R | 6 taxize-0.7.4/taxize/tests/testthat/test-ipni_search.R | 10 taxize-0.7.4/taxize/tests/testthat/test-itis_downstream.R | 2 taxize-0.7.4/taxize/tests/testthat/test-iucn_id.R | 8 taxize-0.7.4/taxize/tests/testthat/test-iucn_summary.R | 50 - taxize-0.7.4/taxize/tests/testthat/test-lowest_common.R |only taxize-0.7.4/taxize/tests/testthat/test-tp_search.R | 22 taxize-0.7.4/taxize/vignettes/taxize_vignette.Rmd | 491 +++++----- 178 files changed, 2613 insertions(+), 3219 deletions(-)
Title: R Markdown Format for 'reveal.js' Presentations
Description: R Markdown format for 'reveal.js' presentations, a framework
for easily creating beautiful presentations using HTML.
Author: Hakim El Hattab [aut, cph] (reveal.js-3.2.0,
https://github.com/hakimel/reveal.js),
JJ Allaire [aut, cre],
RStudio [cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between revealjs versions 0.5.0 dated 2016-01-31 and 0.6 dated 2016-03-08
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ inst/NEWS |only inst/reveal.js-3.2.0/css/theme/beige.css | 4 ++-- inst/reveal.js-3.2.0/css/theme/league.css | 7 ++++--- inst/reveal.js-3.2.0/css/theme/solarized.css | 5 ++--- man/revealjs_presentation.Rd | 12 ++++++------ tests/testthat/test_themes.R | 4 +++- 8 files changed, 28 insertions(+), 25 deletions(-)
Title: Penalized Parametric and Semiparametric Bayesian Survival Models
with Shrinkage and Grouping Priors
Description: Algorithms for fitting penalized parametric and semiparametric Bayesian survival models with shrinkage and grouping priors.
Author: Kyu Ha Lee, Sounak Chakraborty, (Tony) Jianguo Sun
Maintainer: Kyu Ha Lee <klee@hsph.harvard.edu>
Diff between psbcGroup versions 1.2 dated 2015-09-17 and 1.3 dated 2016-03-08
DESCRIPTION | 18 +++++++++--------- MD5 | 12 +++++++++--- NAMESPACE | 3 +++ R/aftGL.R |only man/aftGL.Rd |only man/psbcGroup.Rd | 14 +++++++++----- src |only 7 files changed, 30 insertions(+), 17 deletions(-)
Title: Perceptual Analysis, Visualization and Organization of Spectral
Color Data in R
Description: A cohesive framework for parsing, analyzing and organizing color
from spectral data.
Author: Rafael Maia [aut, cre],
Chad Eliason [aut],
Pierre-Paul Bitton [aut]
Maintainer: Rafael Maia <rm72@zips.uakron.edu>
Diff between pavo versions 0.5-4 dated 2016-01-27 and 0.5-5 dated 2016-03-08
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 5 +++++ R/summary.rspec.R | 18 ++++++++++++------ 4 files changed, 24 insertions(+), 13 deletions(-)
Title: A System for Embedded Scientific Computing and Reproducible
Research with R
Description: The OpenCPU system exposes an HTTP API for embedded scientific
computing with R. This provides scalable foundations for integrating R
based analysis and visualization modules into pipelines, web applications
or big data infrastructures. The OpenCPU server can run either as a
single-user development server within the interactive R session, or as a
high performance multi-user cloud server that builds on Linux, Nginx and
rApache. The current R package forms the core of the system. When loaded
in R, it automatically initiates the single-user server and displays the
web address in the console. Visit the OpenCPU website for detailed
information and documentation on the API.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between opencpu versions 1.5.1 dated 2015-09-25 and 1.5.4 dated 2016-03-08
opencpu-1.5.1/opencpu/inst/doc/opencpu-paper.Rnw |only opencpu-1.5.1/opencpu/vignettes/opencpu-paper.Rnw |only opencpu-1.5.1/opencpu/vignettes/references.bib |only opencpu-1.5.4/opencpu/DESCRIPTION | 10 +++++----- opencpu-1.5.4/opencpu/MD5 | 17 ++++++++--------- opencpu-1.5.4/opencpu/NEWS | 4 ++++ opencpu-1.5.4/opencpu/R/eval_fork.R | 15 ++++++++++++++- opencpu-1.5.4/opencpu/build/vignette.rds |binary opencpu-1.5.4/opencpu/inst/doc/opencpu-paper.pdf |binary opencpu-1.5.4/opencpu/inst/doc/opencpu-paper.pdf.asis |only opencpu-1.5.4/opencpu/inst/doc/opencpu-server.pdf |binary opencpu-1.5.4/opencpu/vignettes/opencpu-paper.pdf.asis |only 12 files changed, 31 insertions(+), 15 deletions(-)
Title: Estimate Copy Number for Digital PCR
Description: The assay sensitivity is the minimum number of copies that the digital PCR assay can detect. Users provide serial dilution results in the format of counts of positive and total reaction wells. The output is the estimated assay sensitivity and the copy number per well in the initial dilute.
Author: Xutao Deng
Maintainer: Xutao Deng <xutaodeng@gmail.com>
Diff between digitalPCR versions 1.0 dated 2014-12-31 and 1.1.0 dated 2016-03-08
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ NAMESPACE | 3 ++- R/digitalPCR.R | 10 ++++++---- R/likelihood.R | 4 +++- R/poisson.param.R | 4 ++-- man/digitalPCR.Rd | 17 ++++++++++------- 7 files changed, 35 insertions(+), 26 deletions(-)
Title: Data Checking
Description: Checks column names,
column classes, values, keys, joins, vectors and scalars.
If the user-defined conditions are met the function
returns an invisible copy of the data frame, vector or scalar.
Otherwise the function throws an informative error.
Author: Joe Thorley [aut, cre]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between datacheckr versions 0.1.0 dated 2016-01-26 and 0.1.1 dated 2016-03-08
DESCRIPTION | 7 ++++--- MD5 | 10 +++++----- NEWS.md | 12 +++++++++--- inst/doc/datacheckr.html | 17 ++++++++--------- inst/doc/nycflights13.html | 17 ++++++++--------- tests/testthat/test-check-values.R | 2 +- 6 files changed, 35 insertions(+), 30 deletions(-)
Title: Censored Autoregressive Model with Exogenous Covariates
Description: A censored time series class is designed. An estimation procedure
is implemented to estimate the Censored AutoRegressive time series with
eXogenous covariates (CARX), assuming normality of the innovations. Some other
functions that might be useful are also included.
Author: Chao Wang [aut, cre],
Kung-Sik Chan [aut]
Maintainer: Chao Wang <chao-wang@uiowa.edu>
Diff between carx versions 0.6.1 dated 2016-01-19 and 0.6.2 dated 2016-03-08
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/carx_default.R | 14 +++++++------- 3 files changed, 13 insertions(+), 13 deletions(-)
Title: Estimation of the Number of Fatalities from Carcass Searches
Description: The number of bird or bat fatalities from collisions with buildings, towers or wind energy turbines can be estimated based on carcass searches and experimentally assessed carcass persistence times and searcher efficiency. Functions for estimating the probability that a bird or bat that died is found by a searcher are provided. Further functions calculate the posterior distribution of the number of fatalities based on the number of carcasses found and the estimated detection probability.
Author: Fraenzi Korner-Nievergelt, Ivo Niermann, Oliver Behr, Matthew A. Etterson, Robert Brinkmann, Pius Korner, Barbara Hellriegel, Tobias Roth, Manuela M. P. Huso, Dan Dalthorp
Maintainer: Fraenzi Korner-Nievergelt <fraenzi.korner@oikostat.ch>
Diff between carcass versions 1.5 dated 2015-11-29 and 1.6 dated 2016-03-08
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/estimateN.r | 5 ++++- 3 files changed, 10 insertions(+), 7 deletions(-)
Title: Actuarial Functions and Heavy Tailed Distributions
Description: Various actuarial science functionalities, mostly in the
fields of loss distributions, risk theory (including ruin theory),
simulation of compound hierarchical models and credibility theory.
The package also features 17 probability laws commonly used in
insurance, mostly heavy tailed distributions.
Author: Vincent Goulet, Sébastien Auclair, Christophe Dutang, Xavier Milhaud, Tommy Ouellet, Louis-Philippe Pouliot, Mathieu Pigeon
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between actuar versions 1.1-10 dated 2015-07-22 and 1.2-0 dated 2016-03-08
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/CTE.R | 16 +++++----------- R/quantile.aggregateDist.R | 12 ++++++------ build/vignette.rds |binary inst/NEWS.Rd | 13 +++++++++++++ inst/doc/actuar.pdf |binary inst/doc/coverage.pdf |binary inst/doc/credibility.pdf |binary inst/doc/lossdist.Rnw | 2 +- inst/doc/lossdist.pdf |binary inst/doc/risk.pdf |binary inst/doc/simulation.pdf |binary man/CTE.Rd | 29 +++++++++++++++++++++++------ vignettes/lossdist.Rnw | 2 +- 15 files changed, 67 insertions(+), 43 deletions(-)
Title: R Interface to Global Biotic Interactions
Description: A programmatic interface to the web service methods
provided by Global Biotic Interactions (GloBI). GloBI provides
access to spatial-temporal species interaction records from
sources all over the world. rglobi provides methods to search
species interactions by location, interaction type, and
taxonomic name. In addition, it supports Cypher, a graph query
language, to allow for executing custom queries on the GloBI
aggregate species interaction data set.
Author: Jorrit Poelen [aut, cre],
Stephen Gosnell [aut],
Sergey Slyusarev [aut]
Maintainer: Jorrit Poelen <jhpoelen@xs4all.nl>
Diff between rglobi versions 0.2.8 dated 2015-05-13 and 0.2.9 dated 2016-03-08
DESCRIPTION | 10 +++++----- LICENSE | 2 +- MD5 | 13 +++++++------ NEWS |only R/rglobi.R | 13 ++++++------- README.md | 7 ++++--- build/vignette.rds |binary man/get_interaction_matrix.Rd | 4 ++-- 8 files changed, 25 insertions(+), 24 deletions(-)
Title: The Multivariate Normal and t Distributions
Description: Functions are provided for computing the density and the
distribution function of multivariate normal and "t" random variables,
and for generating random vectors sampled from these distributions.
Probabilities are computed via non-Monte Carlo methods; different routines
are used in the case d=1, d=2, d>2, if d denotes the number of dimensions.
Author: Fortran code by Alan Genz, R code by Adelchi Azzalini
Maintainer: Adelchi Azzalini <adelchi.azzalini@unipd.it>
Diff between mnormt versions 1.5-3 dated 2015-05-25 and 1.5-4 dated 2016-03-08
ChangeLog |only DESCRIPTION | 12 ++++++------ INDEX |only MD5 | 16 +++++++++------- NAMESPACE | 5 +++-- NEWS | 42 +++++++++++++++++++++++------------------- R/mnormt.R | 32 +++++++++++++++----------------- man/dmnorm.Rd | 38 ++++++++++++++++++++++++-------------- man/dmt.Rd | 39 ++++++++++++++++----------------------- man/pd.solve.Rd | 4 ++-- 10 files changed, 98 insertions(+), 90 deletions(-)
Title: Calculate Textures from Grey-Level Co-Occurrence Matrices
(GLCMs)
Description: Enables calculation of image textures derived from grey-level
co-occurrence matrices (GLCMs). Supports processing images that cannot
fit in memory.
Author: Alex Zvoleff [aut, cre]
Maintainer: Alex Zvoleff <azvoleff@conservation.org>
Diff between glcm versions 1.4 dated 2015-11-21 and 1.6.1 dated 2016-03-08
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS | 15 +++++++++++---- R/glcm.R | 5 +++-- README.md | 7 +++---- man/glcm.Rd | 2 +- src/Makevars |only 7 files changed, 28 insertions(+), 20 deletions(-)
Title: Fast Compressed Neural Networks for R
Description: Provides an interface to kernel routines from the FCNN C++ library.
FCNN is based on a completely new Artificial Neural Network representation that
offers unmatched efficiency, modularity, and extensibility. FCNN4R provides
standard teaching (backpropagation, Rprop, simulated annealing, stochastic
gradient) and pruning algorithms (minimum magnitude, Optimal Brain Surgeon),
but it is first and foremost an efficient computational engine. Users can
easily implement their algorithms by taking advantage of fast gradient computing
routines, as well as network reconstruction functionality (removing weights
and redundant neurons, reordering inputs, merging networks). Networks can be
exported to C functions in order to integrate them into virtually any software
solution.
Author: Grzegorz Klima <gklima@users.sourceforge.net>
Maintainer: Grzegorz Klima <gklima@users.sourceforge.net>
Diff between FCNN4R versions 0.6.1 dated 2016-03-07 and 0.6.2 dated 2016-03-08
DESCRIPTION | 9 ++++----- MD5 | 4 ++-- src/fcnn/fcnncfg.R.h | 11 +++++------ 3 files changed, 11 insertions(+), 13 deletions(-)
Title: Interface to 'Dygraphs' Interactive Time Series Charting Library
Description: An R interface to the 'dygraphs' JavaScript charting library
(a copy of which is included in the package). Provides rich facilities
for charting time-series data in R, including highly configurable
series- and axis-display and interactive features like zoom/pan and
series/point highlighting.
Author: Dan Vanderkam [aut, cph] (dygraphs library in htmlwidgets/lib,
http://dygraphs.com/),
JJ Allaire [aut, cre] (R interface),
RStudio [cph],
Jonathan Owen [aut, cph],
Daniel Gromer [aut, cph],
Petr Shevtsov [aut, cph],
Benoit Thieurmel [aut, cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/htmlwidgets/lib/jquery/AUTHORS.txt)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between dygraphs versions 0.7 dated 2016-02-02 and 0.8 dated 2016-03-08
DESCRIPTION | 8 - MD5 | 8 - inst/NEWS | 8 + inst/examples/examples.html | 237 +++++++++++++++++++++++++------------------ inst/htmlwidgets/dygraphs.js | 29 +++++ 5 files changed, 184 insertions(+), 106 deletions(-)
Title: Statistical Comparisons with Distance-Function Based Permutation
Tests
Description: Provides tools for making statistical comparisons with distance-function based permutation tests developed by P. W. Mielke, Jr. and colleagues at Colorado State University (Mielke, P. W. & Berry, K. J. Permutation Methods: A Distance Function Approach (Springer, New York, 2001)) and for testing parameters estimated in linear models with permutation procedures developed by B. S. Cade and colleagues at the Fort Collins Science Center, U. S. Geological Survey.
Author: Marian Talbert, Jon Richards, Paul Mielke, and Brian Cade
Maintainer: Marian Talbert <mtalbert@usgs.gov>
Diff between Blossom versions 1.3 dated 2015-10-14 and 1.4 dated 2016-03-08
DESCRIPTION | 8 ++++---- MD5 | 3 ++- inst |only 3 files changed, 6 insertions(+), 5 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for the analysis of multiple social networks are delivered with
this package. Among other things, it is possible to create and manipulate multivariate network
data with different formats, and there are effective ways available to treat multiple networks
with routines that combine algebraic systems like the partially ordered semigroup or the
semiring structure together with the relational bundles occurring in different types of
multivariate network data sets. As well an algebraic approach for two-mode networks is made
through Galois derivations between families of the pair of subsets.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 1.8.1 dated 2016-03-04 and 1.8.2 dated 2016-03-08
DESCRIPTION | 7 MD5 | 11 - R/bundles.R | 391 +++++++++++++++++++++---------------------- build |only inst/CHANGELOG | 6 inst/doc/TwoModeNetworks.R |only inst/doc/TwoModeNetworks.Rnw |only man/multiplex-package.Rd | 4 8 files changed, 212 insertions(+), 207 deletions(-)
Title: Half-Normal Plots with Simulation Envelopes
Description: Generates (half-)normal plots with simulation envelopes using different diagnostics from a range of different fitted models. A few example datasets are included.
Author: Rafael de Andrade Moral [aut, cre], John Hinde [aut], Clarice Garcia Borges Demetrio [aut]
Maintainer: Rafael de Andrade Moral <rafael_moral@yahoo.com.br>
Diff between hnp versions 1.1 dated 2015-09-12 and 1.2 dated 2016-03-08
DESCRIPTION | 12 MD5 | 34 NAMESPACE | 50 - R/hnp-internal.R |only R/hnp.R | 2232 +++++++++++++++++++++++++++------------------------- R/newhnp.R |only R/plot.hnp.R | 58 - data/cbb.rda |binary data/chryso.rda |binary data/corn.rda |binary data/fungi.rda |binary data/oil.rda |binary data/orange.rda |only data/progeny.rda |binary data/wolbachia.rda |binary man/hnp-internal.Rd |only man/hnp.Rd | 536 ++++++------ man/newhnp.Rd |only man/oil.Rd | 162 +-- man/orange.Rd |only man/plot.hnp.Rd | 120 +- 21 files changed, 1691 insertions(+), 1513 deletions(-)
Title: Microsoft Word, Microsoft PowerPoint and HTML Documents
Generation
Description: Create 'Microsoft Word' document (>=2007),
'Microsoft PowerPoint' document (>=2007) and 'HTML' documents from R. There are
several features to let you format and present R outputs ; e.g. Editable
Vector Graphics, functions for complex tables reporting, reuse of corporate
template document. You can use the package as a tool for fast reporting
and as a tool for reporting automation. The package does not require
any installation of Microsoft product to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Bootstrap [ctb, cph] (Bootstrap development team),
jQuery [ctb, cph] (The jQuery Foundation)
Maintainer: David Gohel <david.gohel@lysis-consultants.fr>
Diff between ReporteRs versions 0.8.5 dated 2016-02-26 and 0.8.6 dated 2016-03-08
ReporteRs-0.8.5/ReporteRs/man/borderDashed.Rd |only ReporteRs-0.8.5/ReporteRs/man/borderDotted.Rd |only ReporteRs-0.8.5/ReporteRs/man/borderNone.Rd |only ReporteRs-0.8.5/ReporteRs/man/borderSolid.Rd |only ReporteRs-0.8.5/ReporteRs/man/parCenter.Rd |only ReporteRs-0.8.5/ReporteRs/man/parJustify.Rd |only ReporteRs-0.8.5/ReporteRs/man/parLeft.Rd |only ReporteRs-0.8.5/ReporteRs/man/parRight.Rd |only ReporteRs-0.8.5/ReporteRs/man/textBold.Rd |only ReporteRs-0.8.5/ReporteRs/man/textBoldItalic.Rd |only ReporteRs-0.8.5/ReporteRs/man/textItalic.Rd |only ReporteRs-0.8.5/ReporteRs/man/textNormal.Rd |only ReporteRs-0.8.6/ReporteRs/DESCRIPTION | 23 ReporteRs-0.8.6/ReporteRs/MD5 | 99 -- ReporteRs-0.8.6/ReporteRs/NAMESPACE | 8 ReporteRs-0.8.6/ReporteRs/NEWS | 18 ReporteRs-0.8.6/ReporteRs/R/01_tools.R | 5 ReporteRs-0.8.6/ReporteRs/R/FlexTableFormatTools.R | 110 +- ReporteRs-0.8.6/ReporteRs/R/FlexTablePublicAPI.R | 489 ++++------ ReporteRs-0.8.6/ReporteRs/R/ReporteRs.R | 2 ReporteRs-0.8.6/ReporteRs/R/addCodeBlock.R | 39 ReporteRs-0.8.6/ReporteRs/R/addFlexTable.R | 65 - ReporteRs-0.8.6/ReporteRs/R/addFooter.pptx.R | 8 ReporteRs-0.8.6/ReporteRs/R/addImage.R | 82 + ReporteRs-0.8.6/ReporteRs/R/addPlot.R | 99 +- ReporteRs-0.8.6/ReporteRs/R/addSlide.R | 4 ReporteRs-0.8.6/ReporteRs/R/borderProperties.R | 17 ReporteRs-0.8.6/ReporteRs/R/cellProperties.R | 23 ReporteRs-0.8.6/ReporteRs/R/chprop.FlexTable.R |only ReporteRs-0.8.6/ReporteRs/R/colorProperties.R |only ReporteRs-0.8.6/ReporteRs/R/format.properties.R | 282 +---- ReporteRs-0.8.6/ReporteRs/R/java_description.R | 1 ReporteRs-0.8.6/ReporteRs/R/parProperties.R | 11 ReporteRs-0.8.6/ReporteRs/R/textProperties.R | 34 ReporteRs-0.8.6/ReporteRs/inst/java/ReporteRs-0.8.jar |binary ReporteRs-0.8.6/ReporteRs/java/ReporteRs-0.8-src.jar |binary ReporteRs-0.8.6/ReporteRs/man/FlexTable-alter.Rd | 37 ReporteRs-0.8.6/ReporteRs/man/ReporteRs-package.Rd | 2 ReporteRs-0.8.6/ReporteRs/man/addCodeBlock.Rd | 34 ReporteRs-0.8.6/ReporteRs/man/addFlexTable.Rd | 473 --------- ReporteRs-0.8.6/ReporteRs/man/addFooter.pptx.Rd | 17 ReporteRs-0.8.6/ReporteRs/man/addFooterRow.Rd | 6 ReporteRs-0.8.6/ReporteRs/man/addHeaderRow.Rd | 24 ReporteRs-0.8.6/ReporteRs/man/addImage.Rd | 83 - ReporteRs-0.8.6/ReporteRs/man/addPlot.Rd | 84 + ReporteRs-0.8.6/ReporteRs/man/addSlide.Rd | 4 ReporteRs-0.8.6/ReporteRs/man/borderProperties.Rd | 3 ReporteRs-0.8.6/ReporteRs/man/cellProperties.Rd | 5 ReporteRs-0.8.6/ReporteRs/man/chprop.FlexTable.Rd |only ReporteRs-0.8.6/ReporteRs/man/colorProperties.Rd |only ReporteRs-0.8.6/ReporteRs/man/parProperties.Rd | 3 ReporteRs-0.8.6/ReporteRs/man/setFlexTableBackgroundColors.Rd | 6 ReporteRs-0.8.6/ReporteRs/man/setFlexTableBorders.Rd | 8 ReporteRs-0.8.6/ReporteRs/man/shortcut_properties.Rd |only ReporteRs-0.8.6/ReporteRs/man/spanFlexTableColumns.Rd | 2 ReporteRs-0.8.6/ReporteRs/man/spanFlexTableRows.Rd | 2 ReporteRs-0.8.6/ReporteRs/man/textProperties.Rd | 3 ReporteRs-0.8.6/ReporteRs/tests/testthat/test-pptx-img.R | 4 ReporteRs-0.8.6/ReporteRs/tests/testthat/test-pptx-plot.R | 4 59 files changed, 895 insertions(+), 1328 deletions(-)
Title: Multivariate Extreme Value Distributions
Description: Exact simulation from max-stable processes and multivariate extreme value distributions for various parametric models. Threshold selection methods.
Author: Leo Belzile [aut, cre],
Jennifer L. Wadsworth [aut],
Paul J. Northrop [aut],
Claire L. Coleman [aut],
Jin. Zhang [ctb],
Michael A. Newton [ctb],
Art Owen [ctb]
Maintainer: Leo Belzile <leo.belzile@epfl.ch>
Diff between mev versions 1.5 dated 2016-02-15 and 1.6 dated 2016-03-08
DESCRIPTION | 16 - MD5 | 29 +- NAMESPACE | 5 NEWS | 23 +- R/Northrop_Coleman_Extremes_2014.R | 363 +++++++++++++++++++++++++++---------- R/RcppExports.R | 12 + R/Wadsworth_Technometrics_2016.R | 49 ++-- R/rmev_wrapper.R | 2 R/specdens.R |only man/NC.diag.Rd | 9 man/W.diag.Rd | 51 ++--- man/angmeas.Rd |only man/emplik.Rd |only man/gp.fit.Rd | 83 ++++++-- man/rmev.Rd | 2 src/RcppExports.cpp | 47 ++++ src/emp_lik.cpp |only src/zhang_stephens.cpp |only 18 files changed, 500 insertions(+), 191 deletions(-)
Title: R Functions to Perform and Display Google Trends Queries
Description: An interface for retrieving and displaying the information returned
online by Google Trends is provided. Trends (number of hits) over the time as
well as geographic representation of the results can be displayed.
Author: Philippe Massicotte [aut, cre],
Dirk Eddelbuettel [aut]
Maintainer: Philippe Massicotte <pmassicotte@hotmail.com>
Diff between gtrendsR versions 1.3.2 dated 2016-02-18 and 1.3.3 dated 2016-03-08
DESCRIPTION | 9 +- MD5 | 18 ++--- NEWS.md | 14 +++- R/countries.R | 2 R/gtrends.R | 176 ++++++++++++++++++++++++++++++++------------------- README.md | 5 - data/countries.RData |binary man/countries.Rd | 2 man/gconnect.Rd | 2 man/gtrends.Rd | 54 +++++++++++++-- 10 files changed, 192 insertions(+), 90 deletions(-)
Title: A Lightweight Core of the 'assertive' Package
Description: A minimal set of predicates and assertions used by the assertive
package. This is mainly for use by other package developers who want to
include run-time testing features in their own packages. End-users will
usually want to use assertive directly.
Author: Richard Cotton [aut, cre],
Sunkyu Choi [trl],
Ivanka Skakun [trl],
Gergely Dar<c3><b3>czi [trl],
Anton Antonov [trl],
Hisham Ben Hamidane [trl],
Anja Billing [trl],
Aditya Bhagwat [trl],
Rasmus B<c3><a5><c3><a5>th [trl],
Mine Cetinkaya-Rundel [trl],
Aspasia Chatziefthymiou [trl]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.base versions 0.0-4 dated 2016-03-06 and 0.0-5 dated 2016-03-08
DESCRIPTION | 8 MD5 | 68 +++--- NAMESPACE | 116 +++++----- NEWS | 2 R/are-identical.R | 160 +++++++------- R/assert-are-identical.R | 122 +++++----- R/assert-identical-to-true-false-na.R | 270 ++++++++++++------------ R/cause.R | 324 ++++++++++++++-------------- R/engine.R | 240 ++++++++++----------- R/utils.R | 27 +- R/zzz.R | 8 man/Truth.Rd | 380 +++++++++++++++++----------------- man/are_identical.Rd | 128 +++++------ man/assert_engine.Rd | 86 +++---- man/assertionError.Rd | 98 ++++---- man/bapply.Rd | 60 ++--- man/call_and_name.Rd | 70 +++--- man/cause.Rd | 72 +++--- man/coerce_to.Rd | 82 +++---- man/dont_stop.Rd | 74 +++--- man/false.Rd | 44 +-- man/get_name_in_parent.Rd | 16 + man/is2.Rd | 66 ++--- man/na.Rd | 44 +-- man/parenthesize.Rd | 102 ++++----- man/print.vector_with_cause.Rd | 60 ++--- man/set_cause.Rd | 66 ++--- man/strip_attributes.Rd | 48 ++-- man/type_description.Rd | 36 +-- po/R-assertive.base.pot | 190 ++++++++--------- po/R-kr.po | 190 ++++++++--------- po/R-ua.po | 194 ++++++++--------- tests/testthat.R | 8 tests/testthat/test-are-identical.R | 26 +- tests/testthat/test-utils.R | 103 +++++++++ 35 files changed, 1861 insertions(+), 1727 deletions(-)
More information about assertive.base at CRAN
Permanent link
Title: Manage Massive Matrices with Shared Memory and Memory-Mapped
Files
Description: Create, store, access, and manipulate massive matrices.
Matrices are allocated to shared memory and may use memory-mapped
files. Packages 'biganalytics', 'bigtabulate', 'synchronicity', and
'bigalgebra' provide advanced functionality.
Author: Michael J. Kane <kaneplusplus@gmail.com>, John W. Emerson
<jayemerson@gmail.com>, Peter Haverty <haverty.peter@gene.com>, and Charles
Determan Jr. <cdetermanjr@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between bigmemory versions 4.5.17 dated 2016-03-01 and 4.5.18 dated 2016-03-08
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/bigmemory.R | 16 ++++------------ R/hello-bigmemory.R | 4 ---- man/bigmemory-package.Rd | 4 ---- src/BigMatrix.cpp | 24 ++++++------------------ tests/testthat/test_matrix_manips.R | 12 ++++++++++++ tests/testthat/test_readonly.R | 6 +++++- 8 files changed, 38 insertions(+), 50 deletions(-)
Title: Readable Check Functions to Ensure Code Integrity
Description: Lots of predicates (is_* functions) to check the state of your
variables, and assertions (assert_* functions) to throw errors if they
aren't in the right form.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive versions 0.3-1 dated 2015-10-08 and 0.3-2 dated 2016-03-08
assertive-0.3-1/assertive/man/is_set_equal.Rd |only assertive-0.3-2/assertive/DESCRIPTION | 29 assertive-0.3-2/assertive/MD5 | 274 ++-- assertive-0.3-2/assertive/NAMESPACE | 28 assertive-0.3-2/assertive/NEWS | 2 assertive-0.3-2/assertive/R/exports-properties.R | 21 assertive-0.3-2/assertive/R/exports-reflection.R | 504 +++---- assertive-0.3-2/assertive/R/exports-sets.R | 31 assertive-0.3-2/assertive/R/exports-strings.R | 9 assertive-0.3-2/assertive/R/exports-types.R | 657 +++++----- assertive-0.3-2/assertive/README.md | 478 +++---- assertive-0.3-2/assertive/inst/doc/checklists.Rmd | 4 assertive-0.3-2/assertive/inst/doc/introduction.Rmd | 25 assertive-0.3-2/assertive/inst/doc/introduction.html | 35 assertive-0.3-2/assertive/man/DIM.Rd | 2 assertive-0.3-2/assertive/man/Truth.Rd | 2 assertive-0.3-2/assertive/man/are_identical.Rd | 2 assertive-0.3-2/assertive/man/are_same_length.Rd | 4 assertive-0.3-2/assertive/man/are_set_equal.Rd |only assertive-0.3-2/assertive/man/assert_engine.Rd | 2 assertive-0.3-2/assertive/man/assert_is_all_of.Rd | 2 assertive-0.3-2/assertive/man/assertionError.Rd | 2 assertive-0.3-2/assertive/man/assertive.Rd | 10 assertive-0.3-2/assertive/man/bapply.Rd | 2 assertive-0.3-2/assertive/man/call_and_name.Rd | 2 assertive-0.3-2/assertive/man/cause.Rd | 2 assertive-0.3-2/assertive/man/changes.Rd | 16 assertive-0.3-2/assertive/man/character_to_list_of_integer_vectors.Rd | 8 assertive-0.3-2/assertive/man/coerce_to.Rd | 2 assertive-0.3-2/assertive/man/dont_stop.Rd | 2 assertive-0.3-2/assertive/man/false.Rd | 2 assertive-0.3-2/assertive/man/get_name_in_parent.Rd | 2 assertive-0.3-2/assertive/man/has_any_attributes.Rd | 2 assertive-0.3-2/assertive/man/has_arg.Rd | 8 assertive-0.3-2/assertive/man/has_attributes.Rd | 2 assertive-0.3-2/assertive/man/has_cols.Rd | 2 assertive-0.3-2/assertive/man/has_dims.Rd | 2 assertive-0.3-2/assertive/man/has_duplicates.Rd | 2 assertive-0.3-2/assertive/man/has_names.Rd | 2 assertive-0.3-2/assertive/man/has_slot.Rd |only assertive-0.3-2/assertive/man/has_terms.Rd | 2 assertive-0.3-2/assertive/man/is2.Rd | 2 assertive-0.3-2/assertive/man/is_array.Rd | 2 assertive-0.3-2/assertive/man/is_atomic.Rd | 6 assertive-0.3-2/assertive/man/is_batch_mode.Rd | 2 assertive-0.3-2/assertive/man/is_binding_locked.Rd | 8 assertive-0.3-2/assertive/man/is_cas_number.Rd | 2 assertive-0.3-2/assertive/man/is_character.Rd | 2 assertive-0.3-2/assertive/man/is_class.Rd | 2 assertive-0.3-2/assertive/man/is_complex.Rd | 2 assertive-0.3-2/assertive/man/is_connection.Rd | 2 assertive-0.3-2/assertive/man/is_credit_card_number.Rd | 2 assertive-0.3-2/assertive/man/is_data.frame.Rd | 2 assertive-0.3-2/assertive/man/is_data.table.Rd | 2 assertive-0.3-2/assertive/man/is_date.Rd | 2 assertive-0.3-2/assertive/man/is_date_string.Rd | 2 assertive-0.3-2/assertive/man/is_debugged.Rd | 8 assertive-0.3-2/assertive/man/is_diagonal_matrix.Rd | 2 assertive-0.3-2/assertive/man/is_dir.Rd | 2 assertive-0.3-2/assertive/man/is_divisible_by.Rd | 2 assertive-0.3-2/assertive/man/is_email_address.Rd | 2 assertive-0.3-2/assertive/man/is_empty.Rd | 2 assertive-0.3-2/assertive/man/is_empty_character.Rd | 4 assertive-0.3-2/assertive/man/is_empty_file.Rd | 2 assertive-0.3-2/assertive/man/is_empty_model.Rd | 2 assertive-0.3-2/assertive/man/is_environment.Rd | 2 assertive-0.3-2/assertive/man/is_equal_to.Rd | 2 assertive-0.3-2/assertive/man/is_error_free.Rd | 8 assertive-0.3-2/assertive/man/is_executable_file.Rd | 2 assertive-0.3-2/assertive/man/is_existing.Rd | 8 assertive-0.3-2/assertive/man/is_existing_file.Rd | 2 assertive-0.3-2/assertive/man/is_factor.Rd | 2 assertive-0.3-2/assertive/man/is_finite.Rd | 2 assertive-0.3-2/assertive/man/is_formula.Rd |only assertive-0.3-2/assertive/man/is_function.Rd | 2 assertive-0.3-2/assertive/man/is_hex_color.Rd | 2 assertive-0.3-2/assertive/man/is_honorific.Rd | 2 assertive-0.3-2/assertive/man/is_identity_matrix.Rd | 2 assertive-0.3-2/assertive/man/is_if_condition.Rd | 8 assertive-0.3-2/assertive/man/is_in_past.Rd | 2 assertive-0.3-2/assertive/man/is_in_range.Rd | 2 assertive-0.3-2/assertive/man/is_inherited_from.Rd | 2 assertive-0.3-2/assertive/man/is_integer.Rd | 2 assertive-0.3-2/assertive/man/is_ip_address.Rd | 2 assertive-0.3-2/assertive/man/is_isbn_code.Rd | 2 assertive-0.3-2/assertive/man/is_language.Rd | 2 assertive-0.3-2/assertive/man/is_leaf.Rd | 2 assertive-0.3-2/assertive/man/is_library.Rd | 2 assertive-0.3-2/assertive/man/is_list.Rd | 2 assertive-0.3-2/assertive/man/is_loaded.Rd | 8 assertive-0.3-2/assertive/man/is_logical.Rd | 2 assertive-0.3-2/assertive/man/is_lower_triangular_matrix.Rd | 2 assertive-0.3-2/assertive/man/is_nan.Rd | 2 assertive-0.3-2/assertive/man/is_null.Rd | 2 assertive-0.3-2/assertive/man/is_numeric.Rd | 6 assertive-0.3-2/assertive/man/is_numeric_string.Rd | 11 assertive-0.3-2/assertive/man/is_on_os_path.Rd | 2 assertive-0.3-2/assertive/man/is_package_current.Rd | 2 assertive-0.3-2/assertive/man/is_qr.Rd | 2 assertive-0.3-2/assertive/man/is_r.Rd | 2 assertive-0.3-2/assertive/man/is_r_current.Rd | 2 assertive-0.3-2/assertive/man/is_raster.Rd | 2 assertive-0.3-2/assertive/man/is_raw.Rd | 2 assertive-0.3-2/assertive/man/is_real.Rd | 2 assertive-0.3-2/assertive/man/is_relistable.Rd | 2 assertive-0.3-2/assertive/man/is_rstudio_current.Rd | 2 assertive-0.3-2/assertive/man/is_rstudio_desktop.Rd | 2 assertive-0.3-2/assertive/man/is_s4.Rd | 2 assertive-0.3-2/assertive/man/is_single_character.Rd | 8 assertive-0.3-2/assertive/man/is_square_matrix.Rd | 2 assertive-0.3-2/assertive/man/is_symmetric_matrix.Rd | 2 assertive-0.3-2/assertive/man/is_table.Rd | 2 assertive-0.3-2/assertive/man/is_tbl.Rd | 2 assertive-0.3-2/assertive/man/is_try_error.Rd | 2 assertive-0.3-2/assertive/man/is_ts.Rd | 2 assertive-0.3-2/assertive/man/is_uk_car_licence.Rd | 2 assertive-0.3-2/assertive/man/is_uk_national_insurance_number.Rd | 2 assertive-0.3-2/assertive/man/is_uk_postcode.Rd | 2 assertive-0.3-2/assertive/man/is_uk_telephone_number.Rd | 2 assertive-0.3-2/assertive/man/is_unsorted.Rd | 2 assertive-0.3-2/assertive/man/is_us_social_security_number.Rd | 2 assertive-0.3-2/assertive/man/is_us_telephone_number.Rd | 2 assertive-0.3-2/assertive/man/is_us_zip_code.Rd | 2 assertive-0.3-2/assertive/man/is_valid_r_code.Rd | 8 assertive-0.3-2/assertive/man/is_valid_variable_name.Rd | 8 assertive-0.3-2/assertive/man/is_whole_number.Rd | 2 assertive-0.3-2/assertive/man/is_windows.Rd | 2 assertive-0.3-2/assertive/man/is_xxx_for_decimal_point.Rd | 2 assertive-0.3-2/assertive/man/is_zero_matrix.Rd | 2 assertive-0.3-2/assertive/man/merge_dots_with_list.Rd | 2 assertive-0.3-2/assertive/man/n_elements.Rd | 2 assertive-0.3-2/assertive/man/na.Rd | 2 assertive-0.3-2/assertive/man/parenthesize.Rd | 2 assertive-0.3-2/assertive/man/r_can_find_tools.Rd | 4 assertive-0.3-2/assertive/man/r_has_jpeg_capability.Rd | 2 assertive-0.3-2/assertive/man/set_cause.Rd | 2 assertive-0.3-2/assertive/man/strip_attributes.Rd | 2 assertive-0.3-2/assertive/man/sys_get_locale.Rd | 2 assertive-0.3-2/assertive/man/use_first.Rd | 2 assertive-0.3-2/assertive/tests/testthat.R | 12 140 files changed, 1315 insertions(+), 1149 deletions(-)
Title: R Wrapper for the 'Wufoo.com' - The Form Building Service
Description: Allows form managers to download entries from their respondents
using Wufoo JSON API. Additionally, the Wufoo reports - when public - can be
also acquired programmatically. Note that building new forms within this package
is not supported.
Author: John Malc [aut, cre] (@dmpe),
Maksim Pecherskiy [ctb] (@MrMaksimize)
Maintainer: John Malc <cincenko@outlook.com>
Diff between WufooR versions 0.5.9 dated 2016-02-15 and 0.6.1 dated 2016-03-08
DESCRIPTION | 22 - MD5 | 42 +-- NAMESPACE | 30 +- NEWS | 31 +- R/Fields.R | 142 +++++----- R/Form.R | 320 ++++++++++++------------ R/Reports.R | 94 +++---- R/Users.R | 60 ++-- README.md | 92 +++---- build/vignette.rds |binary inst/doc/Tutorial.R | 62 ++-- inst/doc/Tutorial.Rmd | 154 +++++------ inst/doc/Tutorial.html | 583 +++++++++++++++++++++++---------------------- man/auth_name.Rd | 68 ++--- man/fields_info.Rd | 114 ++++---- man/form_entries.Rd | 122 ++++----- man/form_entriesCount.Rd | 72 ++--- man/form_entriesFromCSV.Rd | 80 +++--- man/form_info.Rd | 74 ++--- man/reports_info.Rd | 98 +++---- man/user_info.Rd | 66 ++--- vignettes/Tutorial.Rmd | 154 +++++------ 22 files changed, 1257 insertions(+), 1223 deletions(-)
Title: Replicate Tariff Method for Verbal Autopsy
Description: Implement Tariff algorithm for coding cause of death from verbal autopsies developed by James et al (2011). It also provides simple graphical representation of individual and population level statistics.
Author: Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li <lizehang@uw.edu>
Diff between Tariff versions 1.0 dated 2016-03-03 and 1.0.1 dated 2016-03-08
DESCRIPTION | 10 +++++----- MD5 | 21 ++++++++++++--------- R/Tariff.plot.r | 4 ++-- R/Tariff.r | 6 +++--- R/Tariff_1.0-package.R | 15 +++++++++++++++ R/Tarrif.summary.r | 8 ++++---- R/zzz.R |only data/RandomVA3.rda |binary data/SampleCategory3.rda |only man/SampleCategory3.Rd |only man/plot.tariff.Rd | 4 ++-- man/summary.tariff.Rd | 6 +++--- man/tariff.Rd | 8 ++++---- 13 files changed, 50 insertions(+), 32 deletions(-)
Title: Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species
occurrence in dynamic landscapes, simulate future landscape occupation and
evaluate range expansion when new empty patches are available (e.g. as a
result of climate change).
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro
Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>
Diff between MetaLandSim versions 0.4.1 dated 2015-10-01 and 0.4.2 dated 2016-03-08
DESCRIPTION | 15 - MD5 | 68 ++-- NAMESPACE | 11 R/MetaLandSim.GUI.R | 13 R/iterate.graph.R | 30 +- R/list.stats.R | 21 + R/manage_expansion_sim.R | 8 R/metrics.graph.R | 2 R/range_expansion.R | 14 - R/range_raster.R | 27 + R/simulate_graph.R | 24 - R/span.graph.R | 574 ++++++++++++++++++++++-------------------- R/spom.R | 15 + build/vignette.rds |binary data/cabrera.rda |binary data/landscape_change.rda |binary data/mc_df.rda |binary data/occ.landscape.rda |binary data/occ.landscape2.rda |binary data/param1.rda |binary data/rg_exp.rda |binary data/rland.rda |binary inst/CITATION | 8 inst/doc/MetaLandSim.pdf |binary inst/doc/parametrization.R | 190 ++++++------- inst/doc/parametrization.Rnw | 2 inst/doc/parametrization.pdf |binary inst/doc/range_expansion.R | 84 +++--- man/MetaLandSim-package.Rd | 6 man/iterate.graph.Rd | 11 man/list.stats.Rd | 6 man/manage_expansion_sim.Rd | 4 man/param1.Rd | 72 ++--- man/range_expansion.Rd | 7 vignettes/parametrization.Rnw | 2 35 files changed, 641 insertions(+), 573 deletions(-)
Title: Moment-Based Estimation for Hierarchical Models
Description: Implements methods from the paper
"Fast Moment-Based Estimation for Hierarchical Models," by Perry (2016).
Author: Patrick O. Perry [aut, cre],
Timothy Sweetser [ctb]
Maintainer: Patrick O. Perry <pperry@stern.nyu.edu>
Diff between mbest versions 0.4 dated 2015-10-19 and 0.5 dated 2016-03-08
mbest-0.4/mbest/inst/tests |only mbest-0.5/mbest/DESCRIPTION | 26 ++- mbest-0.5/mbest/MD5 | 54 +++---- mbest-0.5/mbest/NAMESPACE | 62 ++++---- mbest-0.5/mbest/R/firthglm.fit.R | 1 mbest-0.5/mbest/R/mhglm.R | 44 +++--- mbest-0.5/mbest/R/mhglm.fit.R | 126 ++++++++++++----- mbest-0.5/mbest/R/moment.est.R | 255 +++++++++++++++++++++-------------- mbest-0.5/mbest/R/rdglm.fit.R | 2 mbest-0.5/mbest/R/rdglm.group.fit.R | 90 +++++++----- mbest-0.5/mbest/README.md |only mbest-0.5/mbest/inst/CITATION | 22 +-- mbest-0.5/mbest/man/effects.Rd | 11 - mbest-0.5/mbest/man/mhglm.control.Rd | 7 mbest-0.5/mbest/src |only mbest-0.5/mbest/tests/test-all.R | 2 mbest-0.5/mbest/tests/testthat |only 17 files changed, 432 insertions(+), 270 deletions(-)
Title: An R Package for Text Analysis
Description: A set of tools to analyze texts. Includes, amongst others,
functions for automatic language detection, hyphenation, several indices of
lexical diversity (e.g., type token ratio, HD-D/vocd-D, MTLD) and readability
(e.g., Flesch, SMOG, LIX, Dale-Chall). Basic import functions for language
corpora are also provided, to enable frequency analyses (supports Celex and
Leipzig Corpora Collection file formats) and measures like tf-idf. Support for
additional languages can be added on-the-fly or by plugin packages. Note: For
full functionality a local installation of TreeTagger is recommended. 'koRpus'
also includes a plugin for the R GUI and IDE RKWard, providing graphical dialogs
for its basic features. The respective R package 'rkward' cannot be installed
directly from a repository, as it is a part of RKWard. To make full use of this
feature, please install RKWard from https://rkward.kde.org (plugins are detected
automatically). Due to some restrictions on CRAN, the full package sources are
only available from the project homepage. To ask for help, report bugs, suggest
feature improvements, or discuss the global development of the package, please
subscribe to the koRpus-dev mailing list (https://ml06.ispgateway.de/mailman/
listinfo/korpus-dev_r.reaktanz.de).
Author: m.eik michalke [aut, cre],
Earl Brown [ctb],
Alberto Mirisola [ctb],
Alexandre Brulet [ctb],
Laura Hauser [ctb]
Maintainer: m.eik michalke <meik.michalke@hhu.de>
Diff between koRpus versions 0.05-6 dated 2015-06-30 and 0.06-4 dated 2016-03-08
koRpus-0.05-6/koRpus/R/freq.analysis.R |only koRpus-0.05-6/koRpus/R/hyphen.R |only koRpus-0.05-6/koRpus/R/lex.div.R |only koRpus-0.05-6/koRpus/R/read.corp.custom.R |only koRpus-0.05-6/koRpus/R/readability.R |only koRpus-0.05-6/koRpus/man/freq.analysis.Rd |only koRpus-0.05-6/koRpus/man/hyphen.Rd |only koRpus-0.05-6/koRpus/man/lex.div.Rd |only koRpus-0.05-6/koRpus/man/read.corp.custom.Rd |only koRpus-0.05-6/koRpus/man/readability.Rd |only koRpus-0.06-4/koRpus/ChangeLog | 79 koRpus-0.06-4/koRpus/DESCRIPTION | 55 koRpus-0.06-4/koRpus/MD5 | 283 +- koRpus-0.06-4/koRpus/NAMESPACE | 10 koRpus-0.06-4/koRpus/R/00_class_09_kRp.lang.R | 2 koRpus-0.06-4/koRpus/R/01_method_correct.R | 13 koRpus-0.06-4/koRpus/R/01_method_freq.analysis.R |only koRpus-0.06-4/koRpus/R/01_method_hyphen.R |only koRpus-0.06-4/koRpus/R/01_method_lex.div.R |only koRpus-0.06-4/koRpus/R/01_method_plot.kRp.tagged.R | 1 koRpus-0.06-4/koRpus/R/01_method_query.R | 2 koRpus-0.06-4/koRpus/R/01_method_read.corp.custom.R |only koRpus-0.06-4/koRpus/R/01_method_readability.R |only koRpus-0.06-4/koRpus/R/01_method_summary.kRp.readability.R | 7 koRpus-0.06-4/koRpus/R/01_method_summary.kRp.tagged.R | 2 koRpus-0.06-4/koRpus/R/flesch.R | 6 koRpus-0.06-4/koRpus/R/guess.lang.R | 4 koRpus-0.06-4/koRpus/R/kRp.POS.tags.R | 4 koRpus-0.06-4/koRpus/R/koRpus-internal.R | 175 - koRpus-0.06-4/koRpus/R/koRpus-internal.freq.analysis.R |only koRpus-0.06-4/koRpus/R/koRpus-internal.hyphen.R |only koRpus-0.06-4/koRpus/R/koRpus-internal.lexdiv.formulae.R | 456 ++++ koRpus-0.06-4/koRpus/R/koRpus-internal.rdb.formulae.R | 2 koRpus-0.06-4/koRpus/R/koRpus-internal.read.corp.custom.R |only koRpus-0.06-4/koRpus/R/koRpus-package.R | 8 koRpus-0.06-4/koRpus/R/lang.support-de.R | 2 koRpus-0.06-4/koRpus/R/lang.support-en.R | 3 koRpus-0.06-4/koRpus/R/lang.support-es.R | 2 koRpus-0.06-4/koRpus/R/lang.support-fr.R | 2 koRpus-0.06-4/koRpus/R/lang.support-it.R | 38 koRpus-0.06-4/koRpus/R/lang.support-ru.R | 2 koRpus-0.06-4/koRpus/R/read.tagged.R | 88 koRpus-0.06-4/koRpus/R/set.kRp.env.R | 26 koRpus-0.06-4/koRpus/R/set.lang.support.R |only koRpus-0.06-4/koRpus/R/treetag.R | 37 koRpus-0.06-4/koRpus/README.md |only koRpus-0.06-4/koRpus/inst/CITATION | 8 koRpus-0.06-4/koRpus/inst/NEWS.Rd | 110 + koRpus-0.06-4/koRpus/inst/README.languages | 47 koRpus-0.06-4/koRpus/inst/doc/koRpus_vignette.pdf |binary koRpus-0.06-4/koRpus/inst/rkward/koRpus.pluginmap | 250 +- koRpus-0.06-4/koRpus/inst/rkward/plugins/FrequencyAnalysis.js | 114 - koRpus-0.06-4/koRpus/inst/rkward/plugins/FrequencyAnalysis.xml | 104 koRpus-0.06-4/koRpus/inst/rkward/plugins/Hyphenation.js | 49 koRpus-0.06-4/koRpus/inst/rkward/plugins/Hyphenation.xml | 48 koRpus-0.06-4/koRpus/inst/rkward/plugins/LexicalDiversity.js | 336 +-- koRpus-0.06-4/koRpus/inst/rkward/plugins/LexicalDiversity.xml | 266 +- koRpus-0.06-4/koRpus/inst/rkward/plugins/Readability.js | 323 +-- koRpus-0.06-4/koRpus/inst/rkward/plugins/Readability.xml | 246 +- koRpus-0.06-4/koRpus/inst/rkward/plugins/TokenizingPOStagging.js | 135 - koRpus-0.06-4/koRpus/inst/rkward/plugins/TokenizingPOStagging.xml | 102 koRpus-0.06-4/koRpus/inst/rkward/po |only koRpus-0.06-4/koRpus/inst/rkward/rkwarddev_koRpus_plugin_script.R | 1045 +++++----- koRpus-0.06-4/koRpus/inst/shiny/demo/ui.R | 11 koRpus-0.06-4/koRpus/inst/templates |only koRpus-0.06-4/koRpus/man/ARI.Rd | 2 koRpus-0.06-4/koRpus/man/C.ld.Rd | 2 koRpus-0.06-4/koRpus/man/CTTR.Rd | 2 koRpus-0.06-4/koRpus/man/DRP.Rd | 2 koRpus-0.06-4/koRpus/man/ELF.Rd | 2 koRpus-0.06-4/koRpus/man/FOG.Rd | 2 koRpus-0.06-4/koRpus/man/FORCAST.Rd | 2 koRpus-0.06-4/koRpus/man/HDD.Rd | 2 koRpus-0.06-4/koRpus/man/K.ld.Rd | 2 koRpus-0.06-4/koRpus/man/LIX.Rd | 2 koRpus-0.06-4/koRpus/man/MATTR.Rd | 2 koRpus-0.06-4/koRpus/man/MSTTR.Rd | 2 koRpus-0.06-4/koRpus/man/MTLD.Rd | 2 koRpus-0.06-4/koRpus/man/R.ld.Rd | 2 koRpus-0.06-4/koRpus/man/RIX.Rd | 2 koRpus-0.06-4/koRpus/man/S.ld.Rd | 2 koRpus-0.06-4/koRpus/man/SMOG.Rd | 2 koRpus-0.06-4/koRpus/man/TRI.Rd | 2 koRpus-0.06-4/koRpus/man/TTR.Rd | 2 koRpus-0.06-4/koRpus/man/U.ld.Rd | 2 koRpus-0.06-4/koRpus/man/bormuth.Rd | 2 koRpus-0.06-4/koRpus/man/cTest-methods.Rd | 2 koRpus-0.06-4/koRpus/man/clozeDelete-methods.Rd | 2 koRpus-0.06-4/koRpus/man/coleman.Rd | 2 koRpus-0.06-4/koRpus/man/coleman.liau.Rd | 2 koRpus-0.06-4/koRpus/man/correct-methods.Rd | 11 koRpus-0.06-4/koRpus/man/dale.chall.Rd | 2 koRpus-0.06-4/koRpus/man/danielson.bryan.Rd | 2 koRpus-0.06-4/koRpus/man/dickes.steiwer.Rd | 2 koRpus-0.06-4/koRpus/man/farr.jenkins.paterson.Rd | 2 koRpus-0.06-4/koRpus/man/flesch.Rd | 6 koRpus-0.06-4/koRpus/man/flesch.kincaid.Rd | 2 koRpus-0.06-4/koRpus/man/freq.analysis-methods.Rd |only koRpus-0.06-4/koRpus/man/fucks.Rd | 2 koRpus-0.06-4/koRpus/man/get.kRp.env.Rd | 2 koRpus-0.06-4/koRpus/man/guess.lang.Rd | 2 koRpus-0.06-4/koRpus/man/harris.jacobson.Rd | 2 koRpus-0.06-4/koRpus/man/hyph.XX.Rd | 2 koRpus-0.06-4/koRpus/man/hyphen-methods.Rd |only koRpus-0.06-4/koRpus/man/jumbleWords.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.POS.tags.Rd | 6 koRpus-0.06-4/koRpus/man/kRp.TTR-class.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.analysis-class.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.cluster.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.corp.freq-class.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.filter.wclass.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.hyph.pat-class.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.hyphen-class.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.lang-class.Rd | 4 koRpus-0.06-4/koRpus/man/kRp.readability-class.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.tagged-class.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.taggedText-methods.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.text.analysis.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.text.paste.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.text.transform.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.txt.freq-class.Rd | 2 koRpus-0.06-4/koRpus/man/kRp.txt.trans-class.Rd | 2 koRpus-0.06-4/koRpus/man/koRpus-package.Rd | 11 koRpus-0.06-4/koRpus/man/lex.div-methods.Rd |only koRpus-0.06-4/koRpus/man/lex.div.num.Rd | 2 koRpus-0.06-4/koRpus/man/linsear.write.Rd | 2 koRpus-0.06-4/koRpus/man/maas.Rd | 2 koRpus-0.06-4/koRpus/man/manage.hyph.pat.Rd | 2 koRpus-0.06-4/koRpus/man/nWS.Rd | 2 koRpus-0.06-4/koRpus/man/plot-methods.Rd | 2 koRpus-0.06-4/koRpus/man/query-methods.Rd | 6 koRpus-0.06-4/koRpus/man/read.BAWL.Rd | 2 koRpus-0.06-4/koRpus/man/read.corp.LCC.Rd | 2 koRpus-0.06-4/koRpus/man/read.corp.celex.Rd | 2 koRpus-0.06-4/koRpus/man/read.corp.custom-methods.Rd |only koRpus-0.06-4/koRpus/man/read.hyph.pat.Rd | 2 koRpus-0.06-4/koRpus/man/read.tagged.Rd | 46 koRpus-0.06-4/koRpus/man/readability-methods.Rd |only koRpus-0.06-4/koRpus/man/readability.num.Rd | 2 koRpus-0.06-4/koRpus/man/segment.optimizer.Rd | 2 koRpus-0.06-4/koRpus/man/set.kRp.env.Rd | 7 koRpus-0.06-4/koRpus/man/set.lang.support.Rd |only koRpus-0.06-4/koRpus/man/show-methods.Rd | 20 koRpus-0.06-4/koRpus/man/spache.Rd | 2 koRpus-0.06-4/koRpus/man/strain.Rd | 2 koRpus-0.06-4/koRpus/man/summary-methods.Rd | 18 koRpus-0.06-4/koRpus/man/textFeatures.Rd | 2 koRpus-0.06-4/koRpus/man/tokenize.Rd | 36 koRpus-0.06-4/koRpus/man/traenkle.bailer.Rd | 2 koRpus-0.06-4/koRpus/man/treetag.Rd | 12 koRpus-0.06-4/koRpus/man/tuldava.Rd | 2 koRpus-0.06-4/koRpus/man/wheeler.smith.Rd | 2 koRpus-0.06-4/koRpus/tests/testthat/sample_text_hyphen_dput.txt | 308 +- koRpus-0.06-4/koRpus/tests/testthat/sample_text_readability_dput.txt | 10 koRpus-0.06-4/koRpus/tests/testthat/test_tokenizing_POS_tagging.R | 3 155 files changed, 2934 insertions(+), 2211 deletions(-)
Title: AMCE Estimator for Conjoint Experiments
Description: An R implementation of the Average Marginal Component-specific Effects (AMCE) estimator presented in Hainmueller, J., Hopkins, D., and Yamamoto T. (2014) Causal Inference in Conjoint Analysis: Understanding Multi-Dimensional Choices via Stated Preference Experiments. Political Analysis 22(1):1-30.
Author: Anton Strezhnev, Elissa Berwick, Jens Hainmueller, Daniel Hopkins, Teppei Yamamoto
Maintainer: Anton Strezhnev <astrezhnev@fas.harvard.edu>
Diff between cjoint versions 2.0.3 dated 2016-01-12 and 2.0.4 dated 2016-03-08
DESCRIPTION | 8 MD5 | 8 R/cjoint.R | 2104 +++++++++++++++++++++++------------------------------- demo/cjointdemo.R | 20 man/plot.amce.Rd | 8 5 files changed, 946 insertions(+), 1202 deletions(-)
Title: Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Description: The phenology of plants (i.e. the timing of their annual life phases) depends on climatic cues. For temperate trees and many other plants, spring phases, such as leaf emergence and flowering, have been found to result from the effects of both cool (chilling) conditions and heat. Fruit tree scientists (pomologists) have developed some metrics to quantify chilling and heat. 'chillR' contains functions for processing temperature records into chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units (Growing Degree Hours). Regarding chilling metrics, Chill Portions are often considered the most promising, but they are difficult to calculate. This package makes it easy. 'chillR' also contains procedures for conducting a PLS analysis relating phenological dates (e.g. bloom dates) to either mean temperatures or mean chill and heat accumulation rates, based on long-term weather and phenology records.
Author: Eike Luedeling
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between chillR versions 0.55 dated 2015-04-15 and 0.60 dated 2016-03-08
DESCRIPTION | 11 MD5 | 115 ++++-- NAMESPACE | 16 R/PLS_chill_force.R | 234 +++++++------ R/PLS_pheno.R | 224 +++++++----- R/VIP.R | 24 - R/YEARMODA2Date.R |only R/bloom_prediction.R | 112 +++--- R/chile_agromet2chillR.R |only R/chillR.R |only R/chilling.R | 266 +++++++------- R/chilling_hourtable.R | 223 ++++++------ R/color_bar_maker.R | 16 R/daily_chill.R | 141 +------ R/fix_weather.R |only R/get_last_date.R |only R/get_weather.R |only R/handle_chile_agromet.R |only R/handle_cimis.R |only R/handle_gsod.R |only R/handle_ucipm.R |only R/handle_wunderground.R |only R/interpolate_gaps.R | 76 ++-- R/leap_year.R |only R/make_all_day_table.R | 70 +-- R/make_california_UCIPM_station_list.R |only R/make_chill_plot.R |only R/make_daily_chill_figures.R | 124 +++--- R/make_daily_chill_plot.R |only R/make_hourly_temps.R | 140 +++---- R/make_multi_pheno_trend_plot.R |only R/make_pheno_trend_plot.R | 248 ++++++------- R/plot_pheno_results.R | 539 +++++++++++++++++++----------- R/runn_mean.R |only R/stack_hourly_temps.R | 45 +- R/tempResponse.R |only R/temp_models.R |only R/weather2chillR.R |only data/california_stations.rda |only man/Chilling_Hours.Rd |only man/Dynamic_Model.Rd |only man/GDH.Rd |only man/KA_bloom.Rd | 62 +-- man/KA_weather.Rd | 66 +-- man/PLS_chill_force.Rd | 308 ++++++++--------- man/PLS_pheno.Rd | 192 +++++----- man/Utah_Model.Rd |only man/VIP.Rd | 99 ++--- man/YEARMODA2Date.Rd |only man/bloom_prediction.Rd | 235 ++++++------- man/california_stations.Rd |only man/chile_agromet2chillR.Rd |only man/chillR-package.Rd | 125 +++--- man/chilling.Rd | 236 ++++++------- man/chilling_hourtable.Rd | 233 ++++++------ man/color_bar_maker.Rd | 92 ++--- man/daily_chill.Rd | 232 ++++++------ man/fix_weather.Rd |only man/get_last_date.Rd |only man/get_weather.Rd |only man/handle_chile_agromet.Rd |only man/handle_cimis.Rd |only man/handle_gsod.Rd |only man/handle_ucipm.Rd |only man/handle_wunderground.Rd |only man/interpolate_gaps.Rd | 83 ++-- man/leap_year.Rd |only man/make_all_day_table.Rd | 76 ++-- man/make_california_UCIPM_station_list.Rd |only man/make_chill_plot.Rd |only man/make_daily_chill_figures.Rd | 231 ++++++------ man/make_daily_chill_plot.Rd |only man/make_hourly_temps.Rd | 101 ++--- man/make_multi_pheno_trend_plot.Rd |only man/make_pheno_trend_plot.Rd | 192 +++++----- man/plot_PLS.Rd | 142 ++++--- man/runn_mean.Rd |only man/stack_hourly_temps.Rd | 81 ++-- man/step_model.Rd |only man/tempResponse.Rd |only man/weather2chillR.Rd |only 81 files changed, 2827 insertions(+), 2583 deletions(-)