Title: Test Analysis Modules
Description:
Includes marginal maximum likelihood estimation of uni- and
multidimensional item response models (Rasch, 2PL, 3PL,
Generalized Partial Credit, Multi Facets,
Nominal Item Response, Structured Latent Class Analysis,
Mixture Distribution IRT Models, Located Latent Class Models)
and joint maximum likelihood estimation for models
from the Rasch family.
Latent regression models and plausible value imputation are
also supported.
Author:
Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer:
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 1.16-0 dated 2016-02-01 and 1.17-0 dated 2016-03-11
DESCRIPTION | 20 +-- MD5 | 130 +++++++++++-------- NAMESPACE | 250 ++++++++++++++++++++------------------ R/DescribeBy.R |only R/IRTLikelihood.cfa.R | 2 R/IRTLikelihood.ctt.R |only R/Scale.R |only R/TAM-internal_helper.R | 4 R/WLErel.R |only R/plot.tam.R | 4 R/print.tam.R |only R/print.tam.wle.R |only R/summary.tam.R | 12 - R/summary.tam.modelfit.R | 6 R/tam.jml2.R | 11 - R/tam.mml.2pl.R | 11 - R/tam.mml.3pl.R | 11 - R/tam.mml.3pl.est.guessing.R | 8 - R/tam.mml.R | 3 R/tam.mml.mfr.R | 4 R/tam.modelfit.R | 6 R/tam.pv.R | 10 - R/tam.wle.R | 68 +++++++--- R/tamaan.R | 2 R/tampv2datalist.R | 2 R/weighted_mean.R |only R/weighted_quantile.R |only R/weighted_skewness.R |only R/weighted_table.R |only R/weighted_var.R |only R/zzz.R | 11 - data/data.cqc01.rda |binary data/data.cqc02.rda |binary data/data.cqc03.rda |binary data/data.cqc04.rda |binary data/data.cqc05.rda |binary data/data.ctest1.rda |binary data/data.ctest2.rda |binary data/data.ex08.rda |binary data/data.ex10.rda |binary data/data.ex11.rda |binary data/data.ex12.rda |binary data/data.ex14.rda |binary data/data.ex15.rda |binary data/data.exJ03.rda |binary data/data.fims.Aus.Jpn.raw.rda |binary data/data.fims.Aus.Jpn.scored.rda |binary data/data.geiser.rda |binary data/data.gpcm.rda |binary data/data.janssen.rda |binary data/data.janssen2.rda |binary data/data.mc.rda |binary data/data.numeracy.rda |binary data/data.sim.facets.rda |binary data/data.sim.mfr.rda |binary data/data.sim.rasch.missing.rda |binary data/data.sim.rasch.pweights.rda |binary data/data.sim.rasch.rda |binary data/data.timssAusTwn.rda |binary data/data.timssAusTwn.scored.rda |binary inst/NEWS | 45 ++++++ man/DescribeBy.Rd |only man/IRTLikelihood.ctt.Rd |only man/Scale.Rd |only man/TAM-package.Rd | 18 +- man/WLErel.Rd |only man/tam.latreg.Rd | 6 man/tam.mml.3pl.Rd | 63 +++++++++ man/tam.mml.Rd | 47 ++++++- man/tam.pv.Rd | 17 +- man/tam.wle.Rd | 8 + man/tamaan.Rd | 14 ++ man/tampv2datalist.Rd | 4 man/weighted_Stats.Rd |only 74 files changed, 527 insertions(+), 270 deletions(-)
Title: Interface to the 'Handsontable.js' Library
Description: An R interface to the 'Handsontable' JavaScript library, which is a
minimalist Excel-like data grid editor.
Author: Jonathan Owen [aut, cre, cph],
Jeff Allen [ctb],
Yihui Xie [ctb],
Enzo Martoglio [ctb],
Warpechowski Marcin [ctb, cph] (Handsontable.js library),
Handsoncode sp. z o.o. [ctb, cph] (Handsontable.js library),
Aisch Gregor [ctb, cph] (Chroma.js library),
Wood Tim [ctb, cph] (Moment.js library),
Chernev Iskren [ctb, cph] (Moment.js library),
Moment.js contributors [ctb, cph] (Moment.js library),
Bushell David [ctb, cph] (Pikaday.js library),
jQuery Foundation [ctb, cph] (jQuery.js library),
Splunk Inc [ctb, cph] (Sparkline.js library),
Rohan Jon [ctb, cph] (ZeroClipboard library),
Greene James [ctb, cph] (ZeroClipboard library)
Maintainer: Jonathan Owen <jonathanro@gmail.com>
Diff between rhandsontable versions 0.3 dated 2016-02-01 and 0.3.1 dated 2016-03-11
rhandsontable-0.3.1/rhandsontable/DESCRIPTION | 8 rhandsontable-0.3.1/rhandsontable/MD5 | 30 - rhandsontable-0.3.1/rhandsontable/NEWS | 13 rhandsontable-0.3.1/rhandsontable/R/rhandsontable.R | 73 ++-- rhandsontable-0.3.1/rhandsontable/inst/doc/intro_rhandsontable.R | 103 ++--- rhandsontable-0.3.1/rhandsontable/inst/doc/intro_rhandsontable.Rmd | 112 +++--- rhandsontable-0.3.1/rhandsontable/inst/doc/intro_rhandsontable.html | 178 +++++----- rhandsontable-0.3.1/rhandsontable/inst/htmlwidgets/lib/chroma/chroma.min.js |only rhandsontable-0.3.1/rhandsontable/inst/htmlwidgets/lib/handsontable/handsontable.full.min.css | 4 rhandsontable-0.3.1/rhandsontable/inst/htmlwidgets/lib/handsontable/handsontable.full.min.js | 39 -- rhandsontable-0.3.1/rhandsontable/inst/htmlwidgets/lib/jquery/jquery.min.js |only rhandsontable-0.3.1/rhandsontable/inst/htmlwidgets/lib/sparkline/jquery.sparkline.min.js |only rhandsontable-0.3.1/rhandsontable/inst/htmlwidgets/rhandsontable.js | 12 rhandsontable-0.3.1/rhandsontable/inst/htmlwidgets/rhandsontable.yaml | 14 rhandsontable-0.3.1/rhandsontable/man/hot_table.Rd | 5 rhandsontable-0.3.1/rhandsontable/vignettes/intro_rhandsontable.Rmd | 112 +++--- rhandsontable-0.3/rhandsontable/inst/htmlwidgets/lib/chroma/chroma.js |only rhandsontable-0.3/rhandsontable/inst/htmlwidgets/lib/jquery/jquery.js |only rhandsontable-0.3/rhandsontable/inst/htmlwidgets/lib/sparkline/jquery.sparkline.js |only 19 files changed, 369 insertions(+), 334 deletions(-)
Title: Randomization for Clinical Trials
Description: This tool enables the user to choose a randomization procedure
based on sound scientific criteria. It comprises the generation of
randomization sequences as well the assessment of randomization procedures
based on carefully selected criteria. Furthermore, randomizeR provides a
function for the comparison of randomization procedures.
Author: David Schindler [aut],
Diane Uschner [aut, cre],
Martin Manolov [ctb],
Thi Mui Pham [ctb],
Ralf-Dieter Hilgers [aut, ths],
Nicole Heussen [aut, ths]
Maintainer: Diane Uschner <duschner@ukaachen.de>
Diff between randomizeR versions 1.1.0 dated 2016-01-19 and 1.2.0 dated 2016-03-11
DESCRIPTION | 26 ++++++++------ MD5 | 30 ++++++++-------- NAMESPACE | 1 NEWS.md |only R/assess.R | 51 ++++++++++++++-------------- R/ebcPar.R | 6 --- R/randSeq.R | 40 ++++++++++----------- R/randomizeRPackage.R | 3 + build/vignette.rds |binary inst/doc/comparison-example.Rnw | 2 - inst/doc/comparison-example.pdf |binary inst/doc/randomizeR-refCard.pdf |binary man/plotSeq.Rd | 2 - man/randomizeR-package.Rd | 2 - tests/testthat/test_sequenceProbability.R | 2 - vignettes/comparison-example.Rnw | 2 - vignettes/randomizeRQuickReferenceGuide.pdf |only 17 files changed, 86 insertions(+), 81 deletions(-)
Title: Feature Selection Algorithms for Computer Aided Diagnosis
Description: Contains a set of utilities for building and testing formula-based models (linear, logistic or COX) for Computer Aided Diagnosis/Prognosis applications. Utilities include data adjustment, univariate analysis, model building, model-validation, longitudinal analysis, reporting and visualization.
Author: Jose Gerardo Tamez-Pena, Antonio Martinez-Torteya and Israel Alanis
Maintainer: Jose Gerardo Tamez-Pena <jose.tamezpena@itesm.mx>
Diff between FRESA.CAD versions 2.1.3 dated 2015-09-04 and 2.2.0 dated 2016-03-11
DESCRIPTION | 10 MD5 | 80 +++--- NAMESPACE | 2 NEWS | 21 + R/FRESA.Model.R | 32 +- R/ForwardSelection.Model.Bin.R | 24 +- R/ForwardSelection.Model.Res.R | 17 + R/backVarElimination.Bin.R | 32 +- R/backVarElimination.Res.R | 31 +- R/baggedModel.R |only R/bootstrapValidation.Bin.R | 37 --- R/bootstrapValidation.Res.R | 50 ++-- R/bootstrapVarElimination.Bin.R | 93 ++++--- R/bootstrapVarElimination.Res.R | 188 ++++++++------- R/crossValidationFeatureSelection.Bin.R | 176 ++++++++------ R/crossValidationFeatureSelection.Res.R | 321 +++++++++++++++------------ R/getKNNpredictionFromFormula.R | 32 ++ R/heatMaps.R | 341 ++++++++++++++++++----------- R/listTopCorrelatedVariables.R | 21 + R/medianPredict.R | 83 +++++-- R/plot.bootstrapValidation.Bin.R | 2 R/plot.bootstrapValidation.Res.R | 2 R/plotModels.ROC.R | 90 +++++-- R/residualtForFRESA.R | 20 - R/uniRankVar.R | 76 +++++- R/updateModel.Bin.R | 61 +---- R/updateModel.Res.R | 50 ---- man/FRESA.CAD-package.Rd | 4 man/FRESA.Model.Rd | 12 - man/ForwardModel.Bin.Rd | 5 man/ForwardModel.Res.Rd | 3 man/baggedModel.Rd |only man/bootstrapValidation.Bin.Rd | 3 man/crossValidationFeatureSelection.Bin.Rd | 14 + man/crossValidationFeatureSelection.Res.Rd | 20 + man/heatMaps.Rd | 18 - man/medianPredict.Rd | 4 man/plotModels.ROC.Rd | 20 + src/FRESAcommons.cpp | 93 +++++-- src/FRESAcommons.h | 3 src/binaryFeatureSelectionCpp.cpp | 140 +++++++---- src/regresionFeatureSelectionCpp.cpp | 155 ++++++------- 42 files changed, 1418 insertions(+), 968 deletions(-)
Title: Statistical Comparisons of Two or more Alpha Coefficients
Description: Statistical tests for the comparison between two or more alpha
coefficients based on either dependent or independent groups of individuals.
A web interface is available at http://comparingcronbachalphas.org. A plugin
for the R GUI and IDE RKWard is included. Please install RKWard from https://
rkward.kde.org to use this feature. The respective R package 'rkward' cannot be
installed directly from a repository, as it is a part of RKWard.
Author: Birk Diedenhofen [aut, cre]
Maintainer: Birk Diedenhofen <mail@birkdiedenhofen.de>
Diff between cocron versions 1.0-0 dated 2013-09-21 and 1.0-1 dated 2016-03-11
cocron-1.0-0/cocron/R/helper.r |only cocron-1.0-1/cocron/ChangeLog | 4 cocron-1.0-1/cocron/DESCRIPTION | 32 +-- cocron-1.0-1/cocron/MD5 | 36 +-- cocron-1.0-1/cocron/NAMESPACE | 4 cocron-1.0-1/cocron/R/0helper.r |only cocron-1.0-1/cocron/R/cocron-package.R | 13 - cocron-1.0-1/cocron/inst/CITATION | 22 +- cocron-1.0-1/cocron/inst/rkward/cocron.pluginmap | 23 +- cocron-1.0-1/cocron/inst/rkward/plugins/ComparingCronbachalphas.js | 32 +-- cocron-1.0-1/cocron/inst/rkward/plugins/ComparingCronbachalphas.rkh | 50 ++++ cocron-1.0-1/cocron/inst/rkward/plugins/ComparingCronbachalphas.xml | 46 ++-- cocron-1.0-1/cocron/inst/rkward/rkwarddev.cocron.plugin.script.R | 41 ++- cocron-1.0-1/cocron/man/cocron-package.Rd | 30 +- cocron-1.0-1/cocron/man/cocron.Rd | 74 ++----- cocron-1.0-1/cocron/man/cocron.n.coefficients.Rd | 99 ++++----- cocron-1.0-1/cocron/man/cocron.two.coefficients.Rd | 105 ++++------ cocron-1.0-1/cocron/man/cronbach.alpha.CI.Rd | 63 ++---- cocron-1.0-1/cocron/man/cronbach.alpha.Rd | 61 ++--- cocron-1.0-1/cocron/man/knowledge.Rd | 3 20 files changed, 376 insertions(+), 362 deletions(-)
Title: A Collection of Functions to Help with Analysis of Coarsely
Observed Data
Description: Functions to analyze coarse data.
Specifically, it contains functions to (1) fit parametric accelerated
failure time models to interval-censored survival time data, and (2)
estimate the case-fatality ratio in scenarios with under-reporting.
This package's development was motivated by applications to infectious
disease: in particular, problems with estimating the incubation period and
the case fatality ratio of a given disease. Sample data files are included
in the package.
Author: Nicholas G. Reich <nick@schoolph.umass.edu>, Justin Lessler
<jlessler@jhsph.edu>, Andrew Azman <andrewazman@gmail.com>
Maintainer: Nicholas G. Reich <nick@schoolph.umass.edu>
Diff between coarseDataTools versions 0.6-2 dated 2013-08-05 and 0.6-3 dated 2016-03-11
ChangeLog | 4 +++- DESCRIPTION | 14 +++++++------- MD5 | 11 ++++++----- NAMESPACE | 12 ++++++++++-- README.md | 9 +++++++++ build |only inst/doc/CFR_vignette.pdf |binary 7 files changed, 35 insertions(+), 15 deletions(-)
More information about coarseDataTools at CRAN
Permanent link
Title: Chaos Game
Description: The main objective of the package is to enter a word of at least two letters based on which an Iterated Function System with Probabilities (IFSP) is constructed, and a two-dimensional fractal containing the chosen word infinitely often is generated via the Chaos Game. Additionally, the package allows to project the two-dimensional fractal on several three-dimensional surfaces and to transform the fractal into another fractal with uniform marginals.
Author: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>,
Wolfgang Trutschnig <Wolfgang.Trutschnig@sbg.ac.at>
Maintainer: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>
Diff between ChaosGame versions 0.1 dated 2016-02-23 and 0.2 dated 2016-03-11
ChaosGame-0.1/ChaosGame/R/plot_hist3D.R |only ChaosGame-0.1/ChaosGame/man/plot_hist3D.Rd |only ChaosGame-0.2/ChaosGame/DESCRIPTION | 8 +++---- ChaosGame-0.2/ChaosGame/MD5 | 10 ++++---- ChaosGame-0.2/ChaosGame/R/ChaosGame-internal.R | 11 +++++++-- ChaosGame-0.2/ChaosGame/R/plot_word3D.R |only ChaosGame-0.2/ChaosGame/man/ChaosGame-package.Rd | 26 +++++++++++------------ ChaosGame-0.2/ChaosGame/man/plot_word3D.Rd |only 8 files changed, 30 insertions(+), 25 deletions(-)
Title: Reproducible, Accessible & Shareable Species Distribution
Modelling
Description: Reproducible and remixable species distribution modelling. The
package reads user submitted modules from an online repository, runs full
SDM workflows and returns output that is fully reproducible.
Author: Tim Lucas, Nick Golding, Tom August, Greg McInerny, Emiel van Loon
Maintainer: Tom August <tomaug@ceh.ac.uk>
Diff between zoon versions 0.4.21 dated 2015-12-10 and 0.4.23 dated 2016-03-11
zoon-0.4.21/zoon/vignettes/Building_a_module.md |only zoon-0.4.21/zoon/vignettes/basic-zoon-usage.md |only zoon-0.4.21/zoon/vignettes/interactive_zoon_usage.md |only zoon-0.4.23/zoon/DESCRIPTION | 8 zoon-0.4.23/zoon/MD5 | 64 - zoon-0.4.23/zoon/NAMESPACE | 2 zoon-0.4.23/zoon/R/BuildModule.R | 8 zoon-0.4.23/zoon/R/ChangeWorkflow.R | 2 zoon-0.4.23/zoon/R/HelpFunctions.R | 3 zoon-0.4.23/zoon/R/RerunWorkflow.R | 2 zoon-0.4.23/zoon/R/zoon.R | 2 zoon-0.4.23/zoon/R/zoonHelpers.R | 25 zoon-0.4.23/zoon/README.md | 34 zoon-0.4.23/zoon/build/vignette.rds |binary zoon-0.4.23/zoon/inst/doc/Building_a_module.R | 39 zoon-0.4.23/zoon/inst/doc/Building_a_module.Rmd | 54 - zoon-0.4.23/zoon/inst/doc/Building_a_module.html | 888 ++++++++---------- zoon-0.4.23/zoon/inst/doc/basic-zoon-usage.R | 31 zoon-0.4.23/zoon/inst/doc/basic-zoon-usage.Rmd | 83 - zoon-0.4.23/zoon/inst/doc/basic-zoon-usage.html | 266 ++--- zoon-0.4.23/zoon/inst/doc/interactive_zoon_usage.R | 6 zoon-0.4.23/zoon/inst/doc/interactive_zoon_usage.Rmd | 20 zoon-0.4.23/zoon/inst/doc/interactive_zoon_usage.html | 116 -- zoon-0.4.23/zoon/man/BuildModule.Rd | 4 zoon-0.4.23/zoon/man/ChangeWorkflow.Rd | 2 zoon-0.4.23/zoon/man/ExtractAndCombData.Rd |only zoon-0.4.23/zoon/man/RerunWorkflow.Rd | 2 zoon-0.4.23/zoon/man/RunModels.Rd | 2 zoon-0.4.23/zoon/man/workflow.Rd | 2 zoon-0.4.23/zoon/tests/testthat/Rplots.pdf |binary zoon-0.4.23/zoon/tests/testthat/testSortArgs.R | 6 zoon-0.4.23/zoon/tests/testthat/testSplitCall.R | 6 zoon-0.4.23/zoon/vignettes/Building_a_module.Rmd | 54 - zoon-0.4.23/zoon/vignettes/basic-zoon-usage.Rmd | 83 - zoon-0.4.23/zoon/vignettes/interactive_zoon_usage.Rmd | 20 35 files changed, 880 insertions(+), 954 deletions(-)
More information about polychaosbasics at CRAN
Permanent link
Title: High-Dimensional Inference
Description: Implementation of multiple approaches to perform inference in high-dimensional models.
Author: Lukas Meier [aut, cre], Ruben Dezeure [aut], Nicolai Meinshausen [aut], Martin Maechler [aut], Peter Buehlmann [aut]
Maintainer: Lukas Meier <meier@stat.math.ethz.ch>
Diff between hdi versions 0.1-2 dated 2014-08-11 and 0.1-5 dated 2016-03-11
DESCRIPTION | 26 - MD5 | 66 ++- NAMESPACE | 44 +- R/hdi.R | 11 R/helpers.R | 446 +++++++++++++++++------- R/helpers.nodewise.R | 127 +++---- R/lasso-proj.R | 138 ++++--- R/lower-bound.R | 485 +++++++++++++-------------- R/methods.R | 166 ++++----- R/multi-split.R | 770 ++++++++++++++++++++++--------------------- R/multi-split.hierarchical.R |only R/reference.datasets.R |only R/ridge-proj.R | 49 +- R/stability.R | 7 build |only data/riboflavin.RData |binary inst |only man/clusterGroupBound.rd | 145 +++----- man/fdr.adjust.Rd | 2 man/glm.pval.Rd | 4 man/groupBound.rd | 141 ++++--- man/hdi-package.Rd | 49 +- man/hdi.Rd | 28 - man/lasso.cv.Rd | 45 +- man/lasso.firstq.Rd | 35 + man/lasso.proj.Rd | 96 ++++- man/multi.split.Rd | 178 ++++++--- man/plotClusterGroupBound.rd | 63 +-- man/rXb.rd |only man/riboflavin.Rd | 12 man/ridge.proj.Rd | 74 ++-- man/stability.Rd | 25 - tests/groupTsts.R |only tests/test-lasso.R | 63 ++- tests/test-multisplit.R |only tests/test-ridge.R | 7 tests/test-stability.R | 53 -- 37 files changed, 1865 insertions(+), 1490 deletions(-)
Title: Boosting Methods for 'GAMLSS'
Description: Boosting models for fitting generalized additive models for
location, shape and scale ('GAMLSS') to potentially high dimensional
data.
Author: Benjamin Hofner, Andreas Mayr, Nora Fenske, Matthias Schmid
Maintainer: Benjamin Hofner <benjamin.hofner@fau.de>
Diff between gamboostLSS versions 1.2-0 dated 2015-08-19 and 1.2-1 dated 2016-03-11
DESCRIPTION | 12 ++++++------ MD5 | 26 ++++++++++++++------------ NAMESPACE | 3 +-- R/gamboostLSS_intern.R |only R/mboostLSS.R | 15 +++++++++++++-- R/methods.R | 17 ++++++++++++----- build/vignette.rds |binary data/india.RData |binary data/india.bnd.RData |binary inst/CITATION | 3 ++- inst/NEWS.Rd | 36 +++++++++++++++++++++++++++++++++--- inst/doc/gamboostLSS_Tutorial.pdf |binary man/gamboostLSS_intern.Rd |only tests/bugfixes.R | 20 ++++++++++++++++++++ tests/regtest-stabilization.R | 15 +++++++++++---- 15 files changed, 112 insertions(+), 35 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-18 2.0.5
2015-06-30 2.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-15 0.1.6
2014-12-10 0.1.5
2014-10-05 0.1.4
2014-07-04 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-20 1.3
2015-06-15 1.1
2015-06-01 1.0
Title: Presmoothed Estimation in Survival Analysis
Description: Presmoothed estimators of survival, density, cumulative and non-cumulative hazard functions with right-censored survival data.
Author: Ignacio Lopez de Ullibarri and Maria Amalia Jacome
Maintainer: Ignacio Lopez de Ullibarri <ilu@udc.es>
Diff between survPresmooth versions 1.1-8 dated 2013-09-05 and 1.1-9 dated 2016-03-11
ChangeLog | 14 ++++++++++ DESCRIPTION | 10 +++---- MD5 | 14 +++++----- NAMESPACE | 4 ++ R/presmooth.R | 64 +++++++++++++++++++---------------------------- man/control.presmooth.Rd | 12 +++++--- man/presmooth.Rd | 8 ++--- man/pscheck.Rd | 2 - 8 files changed, 68 insertions(+), 60 deletions(-)
Title: Markov Chain Monte Carlo (MCMC) Package
Description: Contains functions to perform Bayesian
inference using posterior simulation for a number of
statistical models. Most simulation is done in compiled C++
written in the Scythe Statistical Library Version 1.0.3. All
models return coda mcmc objects that can then be summarized
using the coda package. Some useful
utility functions such as density functions,
pseudo-random number generators for statistical
distributions, a general purpose Metropolis sampling algorithm,
and tools for visualization are provided.
Author: Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park
Maintainer: Jong Hee Park <jongheepark@snu.ac.kr>
Diff between MCMCpack versions 1.3-4 dated 2016-02-11 and 1.3-5 dated 2016-03-11
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- README | 20 ++++++++------------ src/Makevars.win |only 4 files changed, 15 insertions(+), 18 deletions(-)
Title: Determining and Evaluating High-Risk Zones
Description: Functions for determining and evaluating high-risk zones and
simulating and thinning point process data, as described in 'Determining
high risk zones using point process methodology - Realization by building
an R package' (Seibold, 2012) and 'Determining high-risk zones for
unexploded World War II bombs by using point process methodology' (Mahling
et al., 2013).
Author: Heidi Seibold <Heidi.Seibold@uzh.ch>, Monia Mahling
<monia.mahling@stat.uni-muenchen.de>, Sebastian Linne
<Sebastian.Linne@campus.lmu.de>
Maintainer: Heidi Seibold <Heidi.Seibold@uzh.ch>
Diff between highriskzone versions 1.3 dated 2015-11-16 and 1.3-1 dated 2016-03-11
DESCRIPTION | 15 ++++--- MD5 | 82 +++++++++++++++++++++---------------------- NAMESPACE | 2 - R/est_intens_spde.R | 4 +- data/craterA.RData |binary data/craterB.RData |binary man/bootcor.Rd | 4 +- man/bootcor_restr.Rd | 6 +-- man/bootcorr.Rd | 4 +- man/check_det_hrz_input.Rd | 18 ++++----- man/craterA.Rd | 2 - man/craterB.Rd | 2 - man/det_alpha.Rd | 6 +-- man/det_area.Rd | 6 +-- man/det_hrz.Rd | 42 +++++++++++----------- man/det_hrz_restr.Rd | 2 - man/det_nnarea.Rd | 4 +- man/det_nsintens.Rd | 4 +- man/det_nsintens_restr.Rd | 2 - man/det_radius.Rd | 6 +-- man/det_threshold.Rd | 4 +- man/det_thresholdfromarea.Rd | 4 +- man/est_intens.Rd | 2 - man/est_intens_spde.Rd | 6 +-- man/est_intens_weight.Rd | 6 +-- man/eval_hrz.Rd | 16 ++++---- man/eval_method.Rd | 49 +++++++++++++------------ man/highriskzone-package.Rd | 4 +- man/plot.bootcorr.Rd | 2 - man/plot.highriskzone.Rd | 4 +- man/plot.hrzeval.Rd | 8 ++-- man/print.bootcorr.Rd | 2 - man/print.highriskzone.Rd | 2 - man/print.hrzeval.Rd | 2 - man/read_pppdata.Rd | 6 +-- man/sim_intens.Rd | 2 - man/sim_nsppp.Rd | 9 ++-- man/sim_nsprocess.Rd | 4 +- man/summary.bootcorr.Rd | 2 - man/summary.highriskzone.Rd | 2 - man/summary.hrzeval.Rd | 2 - man/thin.Rd | 4 +- 42 files changed, 178 insertions(+), 175 deletions(-)
Title: Who Are You? Bayesian Prediction of Racial Category Using
Surname and Geolocation
Description: This open-source software package enables researchers to predict
individual ethnicity using his/her surname, geolocation, and other attributes
such as gender and age. The method utilizes the Bayes' rule to compute the
posterior probability of each racial category for any given individual voter.
The package implements methods described in Imai and Khanna (2016) <DOI:10.1093/pan/mpw001>.
Author: Kabir Khanna [aut, cre], Kosuke Imai [aut, cre]
Maintainer: Kabir Khanna <kkhanna@princeton.edu>
Diff between wru versions 0.0-1 dated 2015-12-09 and 0.0-2 dated 2016-03-11
ChangeLog |only DESCRIPTION | 20 ++++++++++++-------- MD5 | 15 ++++++++------- NAMESPACE | 1 + R/name.clean.R | 26 ++++++++++++++++++-------- data/State.FIPS.RData |binary data/names.all.RData |binary data/pid.RData |binary data/voters.RData |binary 9 files changed, 39 insertions(+), 23 deletions(-)
Title: Numerical Calibration of Proxy-Climate Relationships
Description: Bootstrapped response and correlation functions,
seasonal correlations and evaluation of reconstruction
skills for use in dendroclimatology and dendroecology.
Author: Christian Zang [aut, cre, cph, trl],
Franco Biondi [ctb, cph]
Maintainer: Christian Zang <christian.zang@wzw.tum.de>
Diff between treeclim versions 1.0.13 dated 2015-11-26 and 1.0.15 dated 2016-03-11
treeclim-1.0.13/treeclim/tests/testthat/test_moving_windows.R |only treeclim-1.0.15/treeclim/DESCRIPTION | 8 treeclim-1.0.15/treeclim/MD5 | 39 +--- treeclim-1.0.15/treeclim/NAMESPACE | 2 treeclim-1.0.15/treeclim/R/dcc.R | 2 treeclim-1.0.15/treeclim/R/generics.R | 26 +- treeclim-1.0.15/treeclim/R/gershunov.R | 90 ++++----- treeclim-1.0.15/treeclim/R/make_pmat.R | 35 ++- treeclim-1.0.15/treeclim/R/seascorr.R | 15 + treeclim-1.0.15/treeclim/R/skills.R | 96 +++++----- treeclim-1.0.15/treeclim/R/tc_design.R | 10 - treeclim-1.0.15/treeclim/R/tc_mfunc.R | 16 - treeclim-1.0.15/treeclim/R/truncate_input.R | 48 ++--- treeclim-1.0.15/treeclim/README.md | 4 treeclim-1.0.15/treeclim/inst/Changelog | 10 + treeclim-1.0.15/treeclim/man/g_test.Rd | 20 -- treeclim-1.0.15/treeclim/man/make_pmat.Rd | 14 - treeclim-1.0.15/treeclim/man/skills.Rd | 24 +- treeclim-1.0.15/treeclim/man/tc_design.Rd | 5 treeclim-1.0.15/treeclim/man/truncate_input.Rd | 3 treeclim-1.0.15/treeclim/tests/testthat/test_truncation.R | 10 - 21 files changed, 260 insertions(+), 217 deletions(-)
Title: Bindings to AppArmor and Security Related Linux Tools
Description: Bindings to various methods in the kernel for enforcing security
restrictions. AppArmor can apply mandatory access control (MAC) policies on
a given task (process) via security profiles with detailed ACL definitions.
In addition the package has kernel bindings for setting the process hardware
resource limits (rlimit), uid, gid, affinity and priority. The high level R
function 'eval.secure' builds on these methods to do dynamic sandboxing:
it evaluates a single R expression within a temporary fork which acts as a
sandbox by enforcing fine grained restrictions without affecting the main R
process.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between RAppArmor versions 2.0 dated 2016-03-09 and 2.0.1 dated 2016-03-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 4 ++++ configure | 9 +++++++-- tests/run-all.R | 6 +++--- 5 files changed, 21 insertions(+), 12 deletions(-)
Title: Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups
in a Phylogeny
Description: Requires rooted resolved phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.
Author: Orlando Schwery
Maintainer: Orlando Schwery <oschwery@vols.utk.edu>
Diff between MonoPhy versions 1.0 dated 2015-10-19 and 1.1 dated 2016-03-11
DESCRIPTION | 10 MD5 | 47 +-- R/AssessMonophyly.R | 63 ++-- R/GetAncNodes.R | 33 +- R/GetIntruderTaxa.R | 40 +- R/GetIntruderTips.R | 28 + R/GetOutlierTaxa.R | 18 - R/GetOutlierTips.R | 36 +- R/GetResultMonophyly.R | 18 - R/GetSummaryMonophyly.R | 18 - R/PlotMonophyly.R | 22 - README.md |only build/vignette.rds |binary inst/doc/MonoPhyVignette.R | 2 inst/doc/MonoPhyVignette.Rmd | 20 - inst/doc/MonoPhyVignette.html | 630 +++++++++++++----------------------------- man/AssessMonophyly.Rd | 6 man/GetAncNodes.Rd | 4 man/GetIntruderTaxa.Rd | 6 man/GetResultMonophyly.Rd | 4 man/MonoPhy-package.Rd | 6 man/MonophylyData.Rd | 2 man/PlotMonophyly.Rd | 8 tests |only vignettes/MonoPhyVignette.Rmd | 20 - 25 files changed, 455 insertions(+), 586 deletions(-)
Title: Visualise Twitter Interactions
Description: Allows building an edge table from data frame of tweets, also provides function to build vertices (meta-data) and create a temporal graph.
Author: John Coene [aut, cre]
Maintainer: John Coene <jcoenep@gmail.com>
Diff between graphTweets versions 0.2 dated 2016-02-26 and 0.3 dated 2016-03-11
graphTweets-0.2/graphTweets/tests/testthat/test_dat.RData |only graphTweets-0.3/graphTweets/DESCRIPTION | 10 +- graphTweets-0.3/graphTweets/MD5 | 29 ++++---- graphTweets-0.3/graphTweets/NAMESPACE | 2 graphTweets-0.3/graphTweets/R/dynamize.R |only graphTweets-0.3/graphTweets/R/getEdges.R | 45 +++++++----- graphTweets-0.3/graphTweets/R/getNodes.R | 47 ++++++------- graphTweets-0.3/graphTweets/R/graphTweets.R | 18 ++++ graphTweets-0.3/graphTweets/R/utils.R | 38 ++++++++++ graphTweets-0.3/graphTweets/README.md | 16 +++- graphTweets-0.3/graphTweets/man/dynamise.Rd |only graphTweets-0.3/graphTweets/man/getEdges.Rd | 32 ++++---- graphTweets-0.3/graphTweets/man/getNodes.Rd | 27 +++---- graphTweets-0.3/graphTweets/man/graphTweets.Rd | 18 ++++ graphTweets-0.3/graphTweets/tests/testthat/test_dynamise.R |only graphTweets-0.3/graphTweets/tests/testthat/test_edges.R | 14 ++- graphTweets-0.3/graphTweets/tests/testthat/test_nodes.R | 23 ++---- graphTweets-0.3/graphTweets/tests/testthat/tweets.RData |only 18 files changed, 204 insertions(+), 115 deletions(-)
Title: Building Diversity Models from Multiple Species Occupancy Models
Description: Predictions of alpha diversity are fitted from presence data, first abundance is modeled from occupancy models and then, several diversity indices are calculated and finally GLM models are used to predict diversity in different environments and select priority areas.
Author: Derek Corcoran [aut, cre],
Dylan Kesler [aut],
Elisabeth Webb [aut],
Nicole Michel [aut]
Maintainer: Derek Corcoran <derek.corcoran.barrios@gmail.com>
Diff between DiversityOccupancy versions 1.0.0 dated 2016-03-09 and 1.0.1 dated 2016-03-11
DESCRIPTION | 17 ++++++++++------- MD5 | 6 +++--- R/DiversityOccu.R | 6 ++---- inst/doc/my-vignette.html | 4 ++-- 4 files changed, 17 insertions(+), 16 deletions(-)
More information about DiversityOccupancy at CRAN
Permanent link