Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Provides access to 'Git'
repositories to extract data and running some basic 'Git'
commands.
Author: See AUTHORS file.
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between git2r versions 0.13.1 dated 2015-12-10 and 0.14.0 dated 2016-03-13
git2r-0.13.1/git2r/configure.win |only git2r-0.13.1/git2r/src/http-parser |only git2r-0.13.1/git2r/src/libgit2/annotated_commit.c |only git2r-0.13.1/git2r/src/libgit2/annotated_commit.h |only git2r-0.13.1/git2r/src/libgit2/array.h |only git2r-0.13.1/git2r/src/libgit2/attr.c |only git2r-0.13.1/git2r/src/libgit2/attr.h |only git2r-0.13.1/git2r/src/libgit2/attr_file.c |only git2r-0.13.1/git2r/src/libgit2/attr_file.h |only git2r-0.13.1/git2r/src/libgit2/attrcache.c |only git2r-0.13.1/git2r/src/libgit2/attrcache.h |only git2r-0.13.1/git2r/src/libgit2/bitvec.h |only git2r-0.13.1/git2r/src/libgit2/blame.c |only git2r-0.13.1/git2r/src/libgit2/blame.h |only git2r-0.13.1/git2r/src/libgit2/blame_git.c |only git2r-0.13.1/git2r/src/libgit2/blame_git.h |only git2r-0.13.1/git2r/src/libgit2/blob.c |only git2r-0.13.1/git2r/src/libgit2/blob.h |only git2r-0.13.1/git2r/src/libgit2/branch.c |only git2r-0.13.1/git2r/src/libgit2/branch.h |only git2r-0.13.1/git2r/src/libgit2/buf_text.c |only git2r-0.13.1/git2r/src/libgit2/buf_text.h |only git2r-0.13.1/git2r/src/libgit2/buffer.c |only git2r-0.13.1/git2r/src/libgit2/buffer.h |only git2r-0.13.1/git2r/src/libgit2/cache.c |only git2r-0.13.1/git2r/src/libgit2/cache.h |only git2r-0.13.1/git2r/src/libgit2/cc-compat.h |only git2r-0.13.1/git2r/src/libgit2/checkout.c |only git2r-0.13.1/git2r/src/libgit2/checkout.h |only git2r-0.13.1/git2r/src/libgit2/cherrypick.c |only git2r-0.13.1/git2r/src/libgit2/clone.c |only git2r-0.13.1/git2r/src/libgit2/clone.h |only git2r-0.13.1/git2r/src/libgit2/commit.c |only git2r-0.13.1/git2r/src/libgit2/commit.h |only git2r-0.13.1/git2r/src/libgit2/commit_list.c |only git2r-0.13.1/git2r/src/libgit2/commit_list.h |only git2r-0.13.1/git2r/src/libgit2/common.h |only git2r-0.13.1/git2r/src/libgit2/config.c |only git2r-0.13.1/git2r/src/libgit2/config.h |only git2r-0.13.1/git2r/src/libgit2/config_cache.c |only git2r-0.13.1/git2r/src/libgit2/config_file.c |only git2r-0.13.1/git2r/src/libgit2/config_file.h |only git2r-0.13.1/git2r/src/libgit2/crlf.c |only git2r-0.13.1/git2r/src/libgit2/curl_stream.c |only git2r-0.13.1/git2r/src/libgit2/curl_stream.h |only git2r-0.13.1/git2r/src/libgit2/date.c |only git2r-0.13.1/git2r/src/libgit2/delta-apply.c |only git2r-0.13.1/git2r/src/libgit2/delta-apply.h |only git2r-0.13.1/git2r/src/libgit2/delta.c |only git2r-0.13.1/git2r/src/libgit2/delta.h |only git2r-0.13.1/git2r/src/libgit2/describe.c |only git2r-0.13.1/git2r/src/libgit2/diff.c |only git2r-0.13.1/git2r/src/libgit2/diff.h |only git2r-0.13.1/git2r/src/libgit2/diff_driver.c |only git2r-0.13.1/git2r/src/libgit2/diff_driver.h |only git2r-0.13.1/git2r/src/libgit2/diff_file.c |only git2r-0.13.1/git2r/src/libgit2/diff_file.h |only git2r-0.13.1/git2r/src/libgit2/diff_patch.c |only git2r-0.13.1/git2r/src/libgit2/diff_patch.h |only git2r-0.13.1/git2r/src/libgit2/diff_print.c |only git2r-0.13.1/git2r/src/libgit2/diff_stats.c |only git2r-0.13.1/git2r/src/libgit2/diff_tform.c |only git2r-0.13.1/git2r/src/libgit2/diff_xdiff.c |only git2r-0.13.1/git2r/src/libgit2/diff_xdiff.h |only git2r-0.13.1/git2r/src/libgit2/errors.c |only git2r-0.13.1/git2r/src/libgit2/fetch.c |only git2r-0.13.1/git2r/src/libgit2/fetch.h |only git2r-0.13.1/git2r/src/libgit2/fetchhead.c |only git2r-0.13.1/git2r/src/libgit2/fetchhead.h |only git2r-0.13.1/git2r/src/libgit2/filebuf.c |only git2r-0.13.1/git2r/src/libgit2/filebuf.h |only git2r-0.13.1/git2r/src/libgit2/fileops.c |only git2r-0.13.1/git2r/src/libgit2/fileops.h |only git2r-0.13.1/git2r/src/libgit2/filter.c |only git2r-0.13.1/git2r/src/libgit2/filter.h |only git2r-0.13.1/git2r/src/libgit2/fnmatch.c |only git2r-0.13.1/git2r/src/libgit2/fnmatch.h |only git2r-0.13.1/git2r/src/libgit2/global.c |only git2r-0.13.1/git2r/src/libgit2/global.h |only git2r-0.13.1/git2r/src/libgit2/graph.c |only git2r-0.13.1/git2r/src/libgit2/hash |only git2r-0.13.1/git2r/src/libgit2/hash.c |only git2r-0.13.1/git2r/src/libgit2/hash.h |only git2r-0.13.1/git2r/src/libgit2/hashsig.c |only git2r-0.13.1/git2r/src/libgit2/ident.c |only git2r-0.13.1/git2r/src/libgit2/ignore.c |only git2r-0.13.1/git2r/src/libgit2/ignore.h |only git2r-0.13.1/git2r/src/libgit2/index.c |only git2r-0.13.1/git2r/src/libgit2/index.h |only git2r-0.13.1/git2r/src/libgit2/indexer.c |only git2r-0.13.1/git2r/src/libgit2/integer.h |only git2r-0.13.1/git2r/src/libgit2/iterator.c |only git2r-0.13.1/git2r/src/libgit2/iterator.h |only git2r-0.13.1/git2r/src/libgit2/khash.h |only git2r-0.13.1/git2r/src/libgit2/map.h |only git2r-0.13.1/git2r/src/libgit2/merge.c |only git2r-0.13.1/git2r/src/libgit2/merge.h |only git2r-0.13.1/git2r/src/libgit2/merge_file.c |only git2r-0.13.1/git2r/src/libgit2/merge_file.h |only git2r-0.13.1/git2r/src/libgit2/message.c |only git2r-0.13.1/git2r/src/libgit2/message.h |only git2r-0.13.1/git2r/src/libgit2/mwindow.c |only git2r-0.13.1/git2r/src/libgit2/mwindow.h |only git2r-0.13.1/git2r/src/libgit2/netops.c |only git2r-0.13.1/git2r/src/libgit2/netops.h |only git2r-0.13.1/git2r/src/libgit2/notes.c |only git2r-0.13.1/git2r/src/libgit2/notes.h |only git2r-0.13.1/git2r/src/libgit2/object.c |only git2r-0.13.1/git2r/src/libgit2/object.h |only git2r-0.13.1/git2r/src/libgit2/object_api.c |only git2r-0.13.1/git2r/src/libgit2/odb.c |only git2r-0.13.1/git2r/src/libgit2/odb.h |only git2r-0.13.1/git2r/src/libgit2/odb_loose.c |only git2r-0.13.1/git2r/src/libgit2/odb_mempack.c |only git2r-0.13.1/git2r/src/libgit2/odb_pack.c |only git2r-0.13.1/git2r/src/libgit2/offmap.h |only git2r-0.13.1/git2r/src/libgit2/oid.c |only git2r-0.13.1/git2r/src/libgit2/oid.h |only git2r-0.13.1/git2r/src/libgit2/oidarray.c |only git2r-0.13.1/git2r/src/libgit2/oidarray.h |only git2r-0.13.1/git2r/src/libgit2/oidmap.h |only git2r-0.13.1/git2r/src/libgit2/openssl_stream.c |only git2r-0.13.1/git2r/src/libgit2/openssl_stream.h |only git2r-0.13.1/git2r/src/libgit2/pack-objects.c |only git2r-0.13.1/git2r/src/libgit2/pack-objects.h |only git2r-0.13.1/git2r/src/libgit2/pack.c |only git2r-0.13.1/git2r/src/libgit2/pack.h |only git2r-0.13.1/git2r/src/libgit2/path.c |only git2r-0.13.1/git2r/src/libgit2/path.h |only git2r-0.13.1/git2r/src/libgit2/pathspec.c |only git2r-0.13.1/git2r/src/libgit2/pathspec.h |only git2r-0.13.1/git2r/src/libgit2/pool.c |only git2r-0.13.1/git2r/src/libgit2/pool.h |only git2r-0.13.1/git2r/src/libgit2/posix.c |only git2r-0.13.1/git2r/src/libgit2/posix.h |only git2r-0.13.1/git2r/src/libgit2/pqueue.c |only git2r-0.13.1/git2r/src/libgit2/pqueue.h |only git2r-0.13.1/git2r/src/libgit2/push.c |only git2r-0.13.1/git2r/src/libgit2/push.h |only git2r-0.13.1/git2r/src/libgit2/rebase.c |only git2r-0.13.1/git2r/src/libgit2/refdb.c |only git2r-0.13.1/git2r/src/libgit2/refdb.h |only git2r-0.13.1/git2r/src/libgit2/refdb_fs.c |only git2r-0.13.1/git2r/src/libgit2/refdb_fs.h |only git2r-0.13.1/git2r/src/libgit2/reflog.c |only git2r-0.13.1/git2r/src/libgit2/reflog.h |only git2r-0.13.1/git2r/src/libgit2/refs.c |only git2r-0.13.1/git2r/src/libgit2/refs.h |only git2r-0.13.1/git2r/src/libgit2/refspec.c |only git2r-0.13.1/git2r/src/libgit2/refspec.h |only git2r-0.13.1/git2r/src/libgit2/remote.c |only git2r-0.13.1/git2r/src/libgit2/remote.h |only git2r-0.13.1/git2r/src/libgit2/repo_template.h |only git2r-0.13.1/git2r/src/libgit2/repository.c |only git2r-0.13.1/git2r/src/libgit2/repository.h |only git2r-0.13.1/git2r/src/libgit2/reset.c |only git2r-0.13.1/git2r/src/libgit2/revert.c |only git2r-0.13.1/git2r/src/libgit2/revparse.c |only git2r-0.13.1/git2r/src/libgit2/revwalk.c |only git2r-0.13.1/git2r/src/libgit2/revwalk.h |only git2r-0.13.1/git2r/src/libgit2/settings.c |only git2r-0.13.1/git2r/src/libgit2/sha1_lookup.c |only git2r-0.13.1/git2r/src/libgit2/sha1_lookup.h |only git2r-0.13.1/git2r/src/libgit2/signature.c |only git2r-0.13.1/git2r/src/libgit2/signature.h |only git2r-0.13.1/git2r/src/libgit2/socket_stream.c |only git2r-0.13.1/git2r/src/libgit2/socket_stream.h |only git2r-0.13.1/git2r/src/libgit2/sortedcache.c |only git2r-0.13.1/git2r/src/libgit2/sortedcache.h |only git2r-0.13.1/git2r/src/libgit2/stash.c |only git2r-0.13.1/git2r/src/libgit2/status.c |only git2r-0.13.1/git2r/src/libgit2/status.h |only git2r-0.13.1/git2r/src/libgit2/stransport_stream.h |only git2r-0.13.1/git2r/src/libgit2/stream.h |only git2r-0.13.1/git2r/src/libgit2/strmap.c |only git2r-0.13.1/git2r/src/libgit2/strmap.h |only git2r-0.13.1/git2r/src/libgit2/strnlen.h |only git2r-0.13.1/git2r/src/libgit2/submodule.c |only git2r-0.13.1/git2r/src/libgit2/submodule.h |only git2r-0.13.1/git2r/src/libgit2/sysdir.c |only git2r-0.13.1/git2r/src/libgit2/sysdir.h |only git2r-0.13.1/git2r/src/libgit2/tag.c |only git2r-0.13.1/git2r/src/libgit2/tag.h |only git2r-0.13.1/git2r/src/libgit2/thread-utils.c |only git2r-0.13.1/git2r/src/libgit2/thread-utils.h |only git2r-0.13.1/git2r/src/libgit2/tls_stream.c |only git2r-0.13.1/git2r/src/libgit2/tls_stream.h |only git2r-0.13.1/git2r/src/libgit2/trace.c |only git2r-0.13.1/git2r/src/libgit2/trace.h |only git2r-0.13.1/git2r/src/libgit2/transaction.c |only git2r-0.13.1/git2r/src/libgit2/transport.c |only git2r-0.13.1/git2r/src/libgit2/transports |only git2r-0.13.1/git2r/src/libgit2/tree-cache.c |only git2r-0.13.1/git2r/src/libgit2/tree-cache.h |only git2r-0.13.1/git2r/src/libgit2/tree.c |only git2r-0.13.1/git2r/src/libgit2/tree.h |only git2r-0.13.1/git2r/src/libgit2/tsort.c |only git2r-0.13.1/git2r/src/libgit2/unix |only git2r-0.13.1/git2r/src/libgit2/userdiff.h |only git2r-0.13.1/git2r/src/libgit2/util.c |only git2r-0.13.1/git2r/src/libgit2/util.h |only git2r-0.13.1/git2r/src/libgit2/vector.c |only git2r-0.13.1/git2r/src/libgit2/vector.h |only git2r-0.13.1/git2r/src/libgit2/win32 |only git2r-0.13.1/git2r/src/libgit2/xdiff |only git2r-0.13.1/git2r/src/libgit2/zstream.c |only git2r-0.13.1/git2r/src/libgit2/zstream.h |only git2r-0.13.1/git2r/src/regex |only git2r-0.13.1/git2r/src/winhttp |only git2r-0.14.0/git2r/DESCRIPTION | 10 git2r-0.14.0/git2r/MD5 | 740 +- git2r-0.14.0/git2r/NEWS | 22 git2r-0.14.0/git2r/R/checkout.r | 49 git2r-0.14.0/git2r/R/commit.r | 31 git2r-0.14.0/git2r/R/fetch.r | 34 git2r-0.14.0/git2r/R/libgit2.r | 2 git2r-0.14.0/git2r/R/status.r | 3 git2r-0.14.0/git2r/cleanup | 11 git2r-0.14.0/git2r/configure | 3661 +++++----- git2r-0.14.0/git2r/configure.ac | 379 - git2r-0.14.0/git2r/inst/AUTHORS | 5 git2r-0.14.0/git2r/man/fetch-methods.Rd | 27 git2r-0.14.0/git2r/src/Makevars.in | 129 git2r-0.14.0/git2r/src/Makevars.win | 131 git2r-0.14.0/git2r/src/git2r.c | 4 git2r-0.14.0/git2r/src/git2r_config.c | 143 git2r-0.14.0/git2r/src/git2r_remote.c | 82 git2r-0.14.0/git2r/src/git2r_remote.h | 4 git2r-0.14.0/git2r/src/git2r_transfer.h | 3 git2r-0.14.0/git2r/src/libgit2/deps |only git2r-0.14.0/git2r/src/libgit2/include/git2/blame.h | 12 git2r-0.14.0/git2r/src/libgit2/include/git2/blob.h | 4 git2r-0.14.0/git2r/src/libgit2/include/git2/commit.h | 31 git2r-0.14.0/git2r/src/libgit2/include/git2/common.h | 48 git2r-0.14.0/git2r/src/libgit2/include/git2/config.h | 48 git2r-0.14.0/git2r/src/libgit2/include/git2/cred_helpers.h | 2 git2r-0.14.0/git2r/src/libgit2/include/git2/diff.h | 44 git2r-0.14.0/git2r/src/libgit2/include/git2/errors.h | 6 git2r-0.14.0/git2r/src/libgit2/include/git2/index.h | 39 git2r-0.14.0/git2r/src/libgit2/include/git2/merge.h | 60 git2r-0.14.0/git2r/src/libgit2/include/git2/rebase.h | 36 git2r-0.14.0/git2r/src/libgit2/include/git2/remote.h | 13 git2r-0.14.0/git2r/src/libgit2/include/git2/repository.h | 2 git2r-0.14.0/git2r/src/libgit2/include/git2/stash.h | 4 git2r-0.14.0/git2r/src/libgit2/include/git2/submodule.h | 13 git2r-0.14.0/git2r/src/libgit2/include/git2/sys/config.h | 14 git2r-0.14.0/git2r/src/libgit2/include/git2/sys/filter.h | 59 git2r-0.14.0/git2r/src/libgit2/include/git2/sys/index.h | 2 git2r-0.14.0/git2r/src/libgit2/include/git2/sys/odb_backend.h | 4 git2r-0.14.0/git2r/src/libgit2/include/git2/sys/refdb_backend.h | 4 git2r-0.14.0/git2r/src/libgit2/include/git2/sys/stream.h | 13 git2r-0.14.0/git2r/src/libgit2/include/git2/sys/transport.h | 28 git2r-0.14.0/git2r/src/libgit2/include/git2/transport.h | 11 git2r-0.14.0/git2r/src/libgit2/include/git2/version.h | 6 git2r-0.14.0/git2r/src/libgit2/src |only git2r-0.14.0/git2r/tests/add-force.R | 3 git2r-0.14.0/git2r/tests/bare_repository.R | 3 git2r-0.14.0/git2r/tests/blame.R | 3 git2r-0.14.0/git2r/tests/blob.R | 3 git2r-0.14.0/git2r/tests/branch.R | 3 git2r-0.14.0/git2r/tests/checkout-named-branch.R | 3 git2r-0.14.0/git2r/tests/checkout.R | 3 git2r-0.14.0/git2r/tests/checkout_branch.R | 3 git2r-0.14.0/git2r/tests/checkout_commit.R | 3 git2r-0.14.0/git2r/tests/checkout_tag.R | 3 git2r-0.14.0/git2r/tests/clone_bare.R | 3 git2r-0.14.0/git2r/tests/clone_branch.R | 3 git2r-0.14.0/git2r/tests/commit.R | 3 git2r-0.14.0/git2r/tests/config.R | 3 git2r-0.14.0/git2r/tests/diff.R | 3 git2r-0.14.0/git2r/tests/fast_forward_merge.R | 3 git2r-0.14.0/git2r/tests/fetch.R | 3 git2r-0.14.0/git2r/tests/graph.R | 3 git2r-0.14.0/git2r/tests/index.R | 3 git2r-0.14.0/git2r/tests/invalid-conf-var.R |only git2r-0.14.0/git2r/tests/libgit2.R | 3 git2r-0.14.0/git2r/tests/merge.R | 3 git2r-0.14.0/git2r/tests/merge_named_branch.R | 3 git2r-0.14.0/git2r/tests/normal_merge.R | 3 git2r-0.14.0/git2r/tests/note.R | 3 git2r-0.14.0/git2r/tests/odb_blobs.R | 3 git2r-0.14.0/git2r/tests/pre-process-path.R | 3 git2r-0.14.0/git2r/tests/pull.R | 3 git2r-0.14.0/git2r/tests/push-force.R | 3 git2r-0.14.0/git2r/tests/push.R | 3 git2r-0.14.0/git2r/tests/reference.R | 3 git2r-0.14.0/git2r/tests/reflog.R | 3 git2r-0.14.0/git2r/tests/refspec.R | 3 git2r-0.14.0/git2r/tests/remotes.R | 3 git2r-0.14.0/git2r/tests/remove.R | 3 git2r-0.14.0/git2r/tests/repository.R | 3 git2r-0.14.0/git2r/tests/reset.R | 3 git2r-0.14.0/git2r/tests/revparse.R | 3 git2r-0.14.0/git2r/tests/signature.R | 3 git2r-0.14.0/git2r/tests/stash.R | 3 git2r-0.14.0/git2r/tests/status.R | 9 git2r-0.14.0/git2r/tests/tag.R | 3 git2r-0.14.0/git2r/tests/time.R | 3 git2r-0.14.0/git2r/tests/tree.R | 3 git2r-0.14.0/git2r/tests/when.R | 3 git2r-0.14.0/git2r/tools/config.guess | 334 git2r-0.14.0/git2r/tools/config.sub | 106 git2r-0.14.0/git2r/tools/install-sh | 364 git2r-0.14.0/git2r/tools/libcurl.m4 |only git2r-0.14.0/git2r/tools/missing | 4 git2r-0.14.0/git2r/tools/winlibs.R |only 306 files changed, 3715 insertions(+), 3204 deletions(-)
Title: Density Estimation with a Penalized Mixture Approach
Description: Estimation of univariate (conditional) densities using penalized B-splines with automatic selection of optimal smoothing parameter.
Author: Christian Schellhase
Maintainer: Christian Schellhase <cschellhase@wiwi.uni-bielefeld.de>
Diff between pendensity versions 0.2.9 dated 2016-03-01 and 0.2.10 dated 2016-03-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plot.pendensity.R | 35 ++++++++++++++++++----------------- man/pendensity-package.Rd | 4 ++-- 4 files changed, 27 insertions(+), 26 deletions(-)
More information about MultivariateRandomForest at CRAN
Permanent link
Title: Lasso and Elastic-Net Regularized Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression and the Cox model. Two recent additions are the multiple-response Gaussian, and the grouped multinomial. The algorithm uses cyclical coordinate descent in a path-wise fashion, as described in the paper linked to via the URL below.
Author: Jerome Friedman, Trevor Hastie, Noah Simon, Rob Tibshirani
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between glmnet versions 2.0-3 dated 2016-02-23 and 2.0-4 dated 2016-03-13
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/predict.glmnet.R | 2 +- R/predict.multnet.R | 4 ++-- inst/doc/Coxnet.pdf |binary inst/doc/glmnet_beta.html | 28 ++++++++++++++-------------- 6 files changed, 26 insertions(+), 26 deletions(-)
Title: Fit a Generalized Linear Mixed Model
Description: Conduct inference about generalized linear mixed models, with a
choice about which method to use to approximate the likelihood. In addition
to the Laplace and adaptive Gaussian quadrature approximations, which are
borrowed from 'lme4', the likelihood may be approximated by the sequential
reduction approximation, or an importance sampling approximation. These
methods provide an accurate approximation to the likelihood in some
situations where it is not possible to use adaptive Gaussian quadrature.
Author: Helen Ogden [aut, cre]
Maintainer: Helen Ogden <heogden12@gmail.com>
Diff between glmmsr versions 0.1.0 dated 2016-03-09 and 0.1.1 dated 2016-03-13
DESCRIPTION | 6 +- MD5 | 18 +++---- README.md | 10 +++- build/vignette.rds |binary inst/doc/glmmsr-vignette.pdf |binary inst/include/Graph.h | 37 +++++++++++---- src/BasisLevel.cpp | 8 +-- src/Graph.cpp | 105 +++++++++++++++++++++++++++++-------------- src/LogitLink.cpp | 4 - src/QuadratureRule.cpp | 9 ++- 10 files changed, 130 insertions(+), 67 deletions(-)