Mon, 14 Mar 2016

Package WGCNA updated to version 1.51 with previous version 1.49 dated 2015-12-29

Title: Weighted Correlation Network Analysis
Description: Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
Author: Peter Langfelder <Peter.Langfelder@gmail.com> and Steve Horvath <SHorvath@mednet.ucla.edu> with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang
Maintainer: Peter Langfelder <Peter.Langfelder@gmail.com>

Diff between WGCNA versions 1.49 dated 2015-12-29 and 1.51 dated 2016-03-14

 Changelog                           |   34 ++++++++++++++++++++
 DESCRIPTION                         |    8 ++--
 MD5                                 |   39 ++++++++++++-----------
 R/Functions.R                       |   48 +++++++++++++++++------------
 R/blockwiseModulesC.R               |   21 ++++++++++--
 R/branchSplit.R                     |    4 +-
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 man/WGCNA-package.Rd                |    4 +-
 man/blockwiseConsensusModules.Rd    |    9 +++++
 man/blockwiseIndividualTOMs.Rd      |    7 ++++
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 src/corFunctions-unified.c          |   30 ++++++++++++++----
 src/networkFunctions.c              |   33 ++++++++++++++------
 22 files changed, 248 insertions(+), 89 deletions(-)

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Package vegdata updated to version 0.8.9 with previous version 0.8.7 dated 2016-02-23

Title: Access Vegetation Databases and Treat Taxonomy
Description: Handling of vegetation data from Turboveg (<http://www.synbiosys.alterra.nl/turboveg/>) and other sources (<http://www.vegetweb.de>). Taxonomic harmonization given appropriate taxonomic lists (e.g. the German taxonomical standard list "GermanSL", <http://www.botanik.uni-greifswald.de/GermanSL.html>).
Author: Florian Jansen <jansen@uni-greifswald.de>
Maintainer: Florian Jansen <jansen@uni-greifswald.de>

Diff between vegdata versions 0.8.7 dated 2016-02-23 and 0.8.9 dated 2016-03-14

 DESCRIPTION           |    8 ++++----
 MD5                   |   26 +++++++++++++-------------
 NAMESPACE             |    2 +-
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 R/taxval.r            |   15 +++++++++------
 R/tv.coverperc.r      |    2 +-
 R/tv.obs.r            |    5 ++++-
 R/tv.site.r           |   41 ++++++++++++++++++++++++-----------------
 R/vegetweb.r          |   35 ++++++++---------------------------
 inst/doc/vegdata.R    |    2 +-
 inst/doc/vegdata.Rnw  |    4 ++--
 man/tv.site.Rd        |    5 +++--
 vignettes/vegdata.Rnw |    4 ++--
 14 files changed, 78 insertions(+), 80 deletions(-)

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Package pse updated to version 0.4.5 with previous version 0.4.3 dated 2015-09-24

Title: Parameter Space Exploration with Latin Hypercubes
Description: Functions for creating Latin Hypercubes with prescribed correlations and performing parameter space exploration. Also implements the PLUE method. Based on the package sensitivity, by Gilles Pujol, Bertrand Iooss & Alexandre Janon.
Author: Andre Chalom, Paulo Inacio Knegt Lopez de Prado
Maintainer: Andre Chalom <andrechalom@gmail.com>

Diff between pse versions 0.4.3 dated 2015-09-24 and 0.4.5 dated 2016-03-14

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 pse-0.4.5/pse/man/PLUE.Rd               |  119 ++++++++----------
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 39 files changed, 981 insertions(+), 550 deletions(-)

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Package NBDdirichlet updated to version 1.3 with previous version 1.01 dated 2011-09-10

Title: NBD-Dirichlet Model of Consumer Buying Behavior for Marketing Research
Description: The Dirichlet (aka NBD-Dirichlet) model describes the purchase incidence and brand choice of consumer products. We estimate the model and summarize various theoretical quantities of interest to marketing researchers. Also provides functions for making tables that compare observed and theoretical statistics.
Author: Feiming Chen
Maintainer: Feiming Chen <feimingchen@yahoo.com>

Diff between NBDdirichlet versions 1.01 dated 2011-09-10 and 1.3 dated 2016-03-14

 DESCRIPTION              |   17 ++++++++++-------
 MD5                      |   10 +++++-----
 NAMESPACE                |    3 +++
 man/plot.dirichlet.Rd    |    2 +-
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 man/summary.dirichlet.Rd |    2 +-
 6 files changed, 23 insertions(+), 16 deletions(-)

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Package eHOF updated to version 1.7 with previous version 1.6 dated 2015-11-06

Title: Extended HOF (Huisman-Olff-Fresco) Models
Description: Extended and enhanced hierarchical logistic regression models (called Huisman-Olff-Fresco in biology, see Huisman eta l. 1993 JVS) models. Response curves along one-dimensional gradients including no response, monotone, plateau, unimodal and bimodal models.
Author: Florian Jansen, Jari Oksanen
Maintainer: Florian Jansen <jansen@uni-greifswald.de>

Diff between eHOF versions 1.6 dated 2015-11-06 and 1.7 dated 2016-03-14

 DESCRIPTION     |    8 ++++----
 MD5             |   12 ++++++------
 R/Para.deriv.r  |    6 +++---
 R/Para.opt.r    |    2 +-
 R/print.HOF.r   |    2 +-
 man/HOF.Rd      |    2 +-
 man/plot.HOF.Rd |   23 ++++++++---------------
 7 files changed, 24 insertions(+), 31 deletions(-)

More information about eHOF at CRAN
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New package AlignStat with initial version 1.1
Package: AlignStat
Type: Package
Title: Comparison of Alternative Multiple Aequence Alignments
Version: 1.1
Date: 2016-03-14
Author: Thomas Shafee, Ira Cooke
Maintainer: Thomas Shafee <thomas.shafee@gmail.com>
Description: Methods for comparing two alternative multiple sequence alignments (MSAs) to determine whether they align homologous residues in the same columns as one another. It then classifies similarities and differences into conserved gaps, conserved sequence, merges, splits or shifts of one MSA relative to the other. Summarising these categories for each MSA column yields information on which sequence regions are agreed upon my both MSAs, and which differ. Several plotting functions enable easily visualisation of the comparison data for analysis.
License: GPL (>= 2)
Depends: R (>= 2.10)
Imports: Rcpp (>= 0.11.6), seqinr, ggplot2, reshape2
LinkingTo: Rcpp
Suggests: testthat
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-03-14 00:44:23 UTC; icooke
Repository: CRAN
Date/Publication: 2016-03-15 00:17:07

More information about AlignStat at CRAN
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Package shinyAce updated to version 0.2.1 with previous version 0.1.0 dated 2013-11-05

Title: Ace Editor Bindings for Shiny
Description: Ace editor bindings to enable a rich text editing environment within Shiny.
Author: Trestle Technology, LLC [aut], Jeff Allen [cre], Institut de Radioprotection et de Surete Nucleaire [cph], Ajax.org B.V. [ctb, cph] (Ace)
Maintainer: Jeff Allen <cran@trestletechnology.net>

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Permanent link

Package rivr updated to version 1.2 with previous version 1.1 dated 2015-10-16

Title: Steady and Unsteady Open-Channel Flow Computation
Description: A tool for undergraduate and graduate courses in open-channel hydraulics. Provides functions for computing normal and critical depths, steady-state water surface profiles (e.g. backwater curves) and unsteady flow computations (e.g. flood wave routing).
Author: Michael C Koohafkan [aut, cre]
Maintainer: Michael C Koohafkan <michael.koohafkan@gmail.com>

Diff between rivr versions 1.1 dated 2015-10-16 and 1.2 dated 2016-03-14

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Permanent link

Package rdd updated to version 0.57 with previous version 0.56 dated 2013-10-11

Title: Regression Discontinuity Estimation
Description: Provides the tools to undertake estimation in Regression Discontinuity Designs. Both sharp and fuzzy designs are supported. Estimation is accomplished using local linear regression. A provided function will utilize Imbens-Kalyanaraman optimal bandwidth calculation. A function is also included to test the assumption of no-sorting effects.
Author: Drew Dimmery
Maintainer: Drew Dimmery <drewd@nyu.edu>

Diff between rdd versions 0.56 dated 2013-10-11 and 0.57 dated 2016-03-14

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 MD5                |   38 +--
 NAMESPACE          |   19 +
 NEWS               |    3 
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 man/print.RD.Rd    |   45 ++--
 man/rdd-package.Rd |   50 ++--
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Permanent link

New package PenCoxFrail with initial version 1.0.0
Package: PenCoxFrail
Type: Package
Title: Regularization in Cox Frailty Models
Version: 1.0.0
Date: 2016-03-14
Author: Andreas Groll
Maintainer: Andreas Groll <groll@mathematik.uni-muenchen.de>
Description: A regularization approach for Cox Frailty Models by penalization methods is provided.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.6), Matrix
Depends: survival
LinkingTo: Rcpp, RcppArmadillo
Repository: CRAN
NeedsCompilation: yes
Packaged: 2016-03-14 18:14:26 UTC; user
Date/Publication: 2016-03-15 00:06:14

More information about PenCoxFrail at CRAN
Permanent link

Package minerva updated to version 1.4.5 with previous version 1.4.1 dated 2014-08-26

Title: Maximal Information-Based Nonparametric Exploration R Package for Variable Analysis
Description: R wrapper for 'cmine' implementation of Maximal Information-based Nonparametric Exploration statistics (MIC and MINE family). Detailed information of the ANSI C implementation 'cmine' can be found at 'http://mpba.fbk.eu/cmine'.
Author: Michele Filosi [aut, cre], Roberto Visintainer [aut], Davide Albanese [aut], Samantha Riccadonna [ctb], Giuseppe Jurman [ctb], Cesare Furlanello [ctb]
Maintainer: Michele Filosi <filosi@fbk.eu>

Diff between minerva versions 1.4.1 dated 2014-08-26 and 1.4.5 dated 2016-03-14

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 NAMESPACE              |    3 
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More information about minerva at CRAN
Permanent link

Package ggmcmc updated to version 0.8 with previous version 0.7.3 dated 2016-01-04

Title: Tools for Analyzing MCMC Simulations from Bayesian Inference
Description: Tools for assessing and diagnosing convergence of Markov Chain Monte Carlo simulations, as well as for graphically display results from full MCMC analysis. The package also facilitates the graphical interpretation of models by providing flexible functions to plot the results against observed variables.
Author: Xavier Fernández i Marín <xavier.fim@gmail.com>
Maintainer: Xavier Fernández i Marín <xavier.fim@gmail.com>

Diff between ggmcmc versions 0.7.3 dated 2016-01-04 and 0.8 dated 2016-03-14

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 MD5                         |   67 +++++++++++++++++++++++++-------------------
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Permanent link

Package fdapace updated to version 0.1.1 with previous version 0.1.0 dated 2016-03-13

Title: Functional Data Analysis and Empirical Dynamics
Description: Provides implementation of various methods of Functional Data Analysis (FDA) and Empirical Dynamics. The core of this package is Functional Principal Component Analysis (FPCA), a key technique for functional data analysis, for sparsely or densely sampled random trajectories and time courses, via the Principal Analysis by Conditional Estimation (PACE) algorithm or numerical integration. PACE is useful for the analysis of data that have been generated by a sample of underlying (but usually not fully observed) random trajectories. It does not rely on pre-smoothing of trajectories, which is problematic if functional data are sparsely sampled. PACE provides options for functional regression and correlation, for Longitudinal Data Analysis, the analysis of stochastic processes from samples of realized trajectories, and for the analysis of underlying dynamics. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".
Author: Xiongtao Dai, Pantelis Z. Hadjipantelis, Hao Ji, Hans-Georg Mueller, Jane-Ling Wang
Maintainer: Pantelis Z. Hadjipantelis <pantelis@ucdavis.edu>

Diff between fdapace versions 0.1.0 dated 2016-03-13 and 0.1.1 dated 2016-03-14

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Permanent link

New package datadr with initial version 0.8.4
Package: datadr
Type: Package
Title: Divide and Recombine for Large, Complex Data
Version: 0.8.4
Date: 2016-03-14
Authors@R: c(person("Ryan", "Hafen", email = "rhafen@gmail.com", role = c("aut", "cre")), person("Landon", "Sego", role = "ctb"))
Maintainer: Ryan Hafen <rhafen@gmail.com>
Description: Methods for dividing data into subsets, applying analytical methods to the subsets, and recombining the results. Comes with a generic MapReduce interface as well. Works with key-value pairs stored in memory, on local disk, or on HDFS, in the latter case using the R and Hadoop Integrated Programming Environment (RHIPE).
License: BSD_3_clause + file LICENSE
URL: http://tessera.io/docs-datadr
LazyLoad: yes
LazyData: yes
NeedsCompilation: no
Imports: data.table (>= 1.9.6), digest, codetools, hexbin, parallel, magrittr, dplyr, methods
Suggests: testthat (>= 0.11.0), roxygen2 (>= 5.0.1), Rhipe
RoxygenNote: 5.0.1
Additional_repositories: http://ml.stat.purdue.edu/packages
Packaged: 2016-03-14 18:58:23 UTC; hafen
Author: Ryan Hafen [aut, cre], Landon Sego [ctb]
Repository: CRAN
Date/Publication: 2016-03-14 23:55:14

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Package Zelig updated to version 5.0-10 with previous version 5.0-9 dated 2015-12-01

Title: Everyone's Statistical Software
Description: A framework that brings together an abundance of common statistical models found across packages into a unified interface, and provides a common architecture for estimation and interpretation, as well as bridging functions to absorb increasingly more models into the collective library. Zelig allows each individual package, for each statistical model, to be accessed by a common uniformly structured call and set of arguments. Moreover, Zelig automates all the surrounding building blocks of a statistical work-flow --procedures and algorithms that may be essential to one user's application but which the original package developer did not use in their own research and might not themselves support. These include bootstrapping, jackknifing, and re-weighting of data. In particular, Zelig automatically generates predicted and simulated quantities of interest (such as relative risk ratios, average treatment effects, first differences and predicted and expected values) to interpret and visualize complex models.
Author: Christine Choirat, James Honaker, Kosuke Imai, Gary King, Olivia Lau
Maintainer: James Honaker <zelig-zee@iq.harvard.edu>

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Package treeclim updated to version 1.0.16 with previous version 1.0.15 dated 2016-03-11

Title: Numerical Calibration of Proxy-Climate Relationships
Description: Bootstrapped response and correlation functions, seasonal correlations and evaluation of reconstruction skills for use in dendroclimatology and dendroecology.
Author: Christian Zang [aut, cre, cph, trl], Franco Biondi [ctb, cph]
Maintainer: Christian Zang <christian.zang@wzw.tum.de>

Diff between treeclim versions 1.0.15 dated 2016-03-11 and 1.0.16 dated 2016-03-14

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Package sjmisc updated to version 1.6 with previous version 1.5 dated 2016-02-11

Title: Data Transformation and Labelled Data Utility Functions
Description: Collection of miscellaneous utility functions (especially intended for people coming from other statistical software packages like 'SPSS', and/ or who are new to R), supporting following common tasks: 1) Reading and writing data between R and other statistical software packages like 'SPSS', 'SAS' or 'Stata' and working with labelled data; this includes easy ways to get and set label attributes, to convert labelled vectors into factors (and vice versa), or to deal with multiple declared missing values etc. 2) Data transformation tasks like recoding, dichotomizing or grouping variables, setting and replacing missing values. 3) Convenient functions to perform frequently used statistical tests, or to calculate various commonly used statistical coefficients.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>

Diff between sjmisc versions 1.5 dated 2016-02-11 and 1.6 dated 2016-03-14

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Package piecewiseSEM updated to version 1.1 with previous version 1.0.3 dated 2016-02-01

Title: Piecewise Structural Equation Modeling
Description: Implements piecewise structural equation models.
Author: Jon Lefcheck
Maintainer: Jon Lefcheck <jslefche@vims.edu>

Diff between piecewiseSEM versions 1.0.3 dated 2016-02-01 and 1.1 dated 2016-03-14

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Package latdiag updated to version 0.2-2 with previous version 0.2-1 dated 2015-01-16

Title: Draws Diagrams Useful for Checking Latent Scales
Description: A graph proposed by Rosenbaum is useful for checking some properties of various sorts of latent scale, this program generates commands to obtain the graph using 'dot' from 'graphviz'.
Author: Michael Dewey
Maintainer: Michael Dewey <lists@dewey.myzen.co.uk>

Diff between latdiag versions 0.2-1 dated 2015-01-16 and 0.2-2 dated 2016-03-14

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Permanent link

New package iWISA with initial version 1.0-2
Package: iWISA
Type: Package
Title: Wavelet-Based Index of Storm Activity
Version: 1.0-2
Date: 2015-11-24
Authors@R: c(person("Inga", "Maslova", role="aut"), person("Wen", "Xiao", role=c("aut","cre"), email="wx5356a@student.american.edu"))
Depends: R (>= 2.10.0), stats
Imports: waveslim, fda, ggplot2, splines, graphics
Description: A powerful system for estimating an improved wavelet-based index of magnetic storm activity, storm activity preindex (from individual station) and SQ variations. It also serves as a flexible visualization tool.
Author: Inga Maslova [aut], Wen Xiao [aut, cre]
Maintainer: Wen Xiao <wx5356a@student.american.edu>
LazyData: true
License: GPL-2 | GPL-3
Repository: CRAN
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-03-14 15:13:16 UTC; Chelsey
Date/Publication: 2016-03-14 17:58:21

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Package enviPat updated to version 2.1 with previous version 2.0 dated 2015-06-05

Title: Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry
Description: Fast and very memory-efficient calculation of isotope patterns, subsequent convolution to theoretical envelopes (profiles) plus valley detection and centroidization or intensoid calculation. Batch processing, resolution interpolation, wrapper, adduct calculations and molecular formula parsing.
Author: Martin Loos, Christian Gerber
Maintainer: Martin Loos <martin.loos@alumni.ethz.ch>

Diff between enviPat versions 2.0 dated 2015-06-05 and 2.1 dated 2016-03-14

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New package tutorial with initial version 0.2.1
Package: tutorial
Type: Package
Title: Convert R Markdown Files to DataCamp Light HTML Files
Version: 0.2.1
Author: Filip Schouwenaars
Maintainer: Filip Schouwenaars <filip@datacamp.com>
URL: https://github.com/datacamp/tutorial
BugReports: https://github.com/datacamp/tutorial/issues
Description: DataCamp Light (<https://github.com/datacamp/datacamp-light>) is a light-weight implementation of the DataCamp UI, that allows you to embed interactive exercises inside HTML documents. The 'tutorial' package makes it easy to create these HTML files from R Markdown files. A wrapper around the 'rmarkdown' package, 'tutorial' pre-detects code chunks with the 'ex' and 'type' properties, and replaces the chunks with DataCamp Light readable chunks in the resulting HTML file.
License: MIT + file LICENSE
LazyData: TRUE
Imports: markdown, rmarkdown
Suggests: testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-03-14 13:49:32 UTC; filip
Repository: CRAN
Date/Publication: 2016-03-14 15:23:56

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Package presens updated to version 2.0.0 with previous version 1.0.0 dated 2015-02-10

Title: R Interface for PreSens Fiber Optic Data
Description: Makes output files from select PreSens Fiber Optic Oxygen Transmitters easier to work with in R. See http://www.presens.de for more information about PreSens (Precision Sensing GmbH).
Author: Matthew A. Birk
Maintainer: Matthew A. Birk <matthewabirk@gmail.com>

Diff between presens versions 1.0.0 dated 2015-02-10 and 2.0.0 dated 2016-03-14

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Package nontarget updated to version 1.8 with previous version 1.7 dated 2015-01-17

Title: Detecting Isotope, Adduct and Homologue Relations in LC-MS Data
Description: Screening a HRMS data set for peaks related by (1) isotope patterns, (2) different adducts of the same molecule and/or (3) homologue series. The resulting isotopic pattern and adduct groups can then be combined to so-called components, with homologue series information attached. Also allows plotting and filtering HRMS data for mass defects, frequent m/z distances and components vs. non-components.
Author: Martin Loos
Maintainer: Martin Loos <Martin.Loos@eawag.ch>

Diff between nontarget versions 1.7 dated 2015-01-17 and 1.8 dated 2016-03-14

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Package nlme updated to version 3.1-126 with previous version 3.1-125 dated 2016-02-27

Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), R-core [aut, cre]
Maintainer: R-core <R-core@R-project.org>

Diff between nlme versions 3.1-125 dated 2016-02-27 and 3.1-126 dated 2016-03-14

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Package enviPick updated to version 1.4 with previous version 1.3 dated 2014-11-29

Title: Peak Picking for High Resolution Mass Spectrometry Data
Description: Sequential partitioning, clustering and peak detection of centroided LC-MS mass spectrometry data (.mzXML). Interactive result and raw data plot.
Author: Martin Loos
Maintainer: Martin Loos <Martin.Loos@eawag.ch>

Diff between enviPick versions 1.3 dated 2014-11-29 and 1.4 dated 2016-03-14

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New package DisimForMixed with initial version 0.1
Package: DisimForMixed
Type: Package
Title: Calculate Dissimilarity Matrix for Dataset with Mixed Attributes
Version: 0.1
Date: 2016-03-08
Author: Hasanthi A. Pathberiya
Maintainer: Hasanthi A. Pathberiya <hasaanu@gmail.com>
Imports: dplyr, cluster
Description: Implement the methods proposed by Ahmad & Dey (2007) <doi:10.1016/j.datak.2007.03.016> in calculating the dissimilarity matrix at the presence of mixed attributes. This Package includes functions to discretize quantitative variables, calculate conditional probability for each pair of attribute values, distance between every pair of attribute values, significance of attributes, calculate dissimilarity between each pair of objects.
License: GPL
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-03-14 13:22:41 UTC; hasan
Repository: CRAN
Date/Publication: 2016-03-14 15:23:47

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Package selectiongain updated to version 2.0.50.1 with previous version 2.0.40 dated 2014-12-29

Title: A Tool for Calculation and Optimization of the Expected Gain from Multi-Stage Selection
Description: Multi-stage selection is practiced in numerous fields of life and social sciences and particularly in breeding. A special characteristic of multi-stage selection is that candidates are evaluated in successive stages with increasing intensity and effort, and only a fraction of the superior candidates is selected and promoted to the next stage. For the optimum design of such selection programs, the selection gain plays a crucial role. It can be calculated by integration of a truncated multivariate normal (MVN) distribution. While mathematical formulas for calculating the selection gain and the variance among selected candidates were developed long time ago, solutions for numerical calculation were not available. This package can also be used for optimizing multi-stage selection programs for a given total budget and different costs of evaluating the candidates in each stage.
Author: Xuefei Mi, Jose Marulanda, H. Friedrich Utz, Albrecht E. Melchinger (Project contact person: Melchinger@uni-hohenheim.de )
Maintainer: Xuefei Mi <mi_xue_fei@hotmail.com>

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Package FDboost updated to version 0.1-0 with previous version 0.0-8 dated 2015-02-16

Title: Boosting Functional Regression Models
Description: Regression models for functional data, i.e., scalar-on-function, function-on-scalar and function-on-function regression models, are fitted by a component-wise gradient boosting algorithm.
Author: Sarah Brockhaus [aut, cre], David Ruegamer [ctb], Torsten Hothorn [ctb], with contributions by many others (see inst/CONTRIBUTIONS) [ctb]
Maintainer: Sarah Brockhaus <Sarah.Brockhaus@stat.uni-muenchen.de>

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Package DandEFA updated to version 1.6 with previous version 1.5 dated 2014-04-25

Title: Dandelion Plot for R-Mode Exploratory Factor Analysis
Description: Contains the function used to create the Dandelion Plot. Dandelion Plot is a visualization method for R-mode Exploratory Factor Analysis.
Author: Artur Manukyan, Ahmet Sedef, Erhan Cene, Ibrahim Demir
Maintainer: Artur Manukyan <artur-man@hotmail.com>

Diff between DandEFA versions 1.5 dated 2014-04-25 and 1.6 dated 2016-03-14

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Package ggseas updated to version 0.3.0 with previous version 0.2.1 dated 2016-02-29

Title: 'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
Description: Provides 'ggplot2' 'stats' that estimate seasonally adjusted series and rolling summaries such as rolling average on the fly for time series.
Author: Peter Ellis <peter.ellis2013nz@gmail.com>
Maintainer: Peter Ellis <peter.ellis2013nz@gmail.com>

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Package x13binary updated to version 0.1.2 with previous version 0.1.1 dated 2016-02-10

Title: Provide the 'x13ashtml' Seasonal Adjustment Binary
Description: The US Census provides a seasonal adjustment program now called 'X-13ARIMA-SEATS' building on both earlier Census programs called X-11 and X-12 as well as the SEATS program by the Bank of Spain. Census offers both source and binary versions -- which this package integrates for use by other R packages.
Author: Dirk Eddelbuettel and Christoph Sax
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between x13binary versions 0.1.1 dated 2016-02-10 and 0.1.2 dated 2016-03-14

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New package thregI with initial version 1.0.1
Package: thregI
Type: Package
Title: Threshold Regression for Interval-Censored Data with Cure-Rate or without Cure-Rate Model
Version: 1.0.1
Date: 2016-3-14
Author: Man-Hua Chen
Maintainer: Man-Hua Chen <mchen@mail.tku.edu.tw>
Depends: survival, Formula
Description: Fit a threshold regression model for interval-censored data based on the first-hitting-time of a boundary by the sample path of a Wiener diffusion process. The threshold regression methodology is well suited to applications involving survival and time-to-event data.
License: GPL-2
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-03-14 01:18:42 UTC; Manman
Repository: CRAN
Date/Publication: 2016-03-14 07:54:30

More information about thregI at CRAN
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Package SharpeR updated to version 1.1.0 with previous version 1.0.0 dated 2015-06-18

Title: Statistical Significance of the Sharpe Ratio
Description: A collection of tools for analyzing significance of trading strategies, based on the Sharpe ratio and overfit of the same.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav <shabbychef@gmail.com>

Diff between SharpeR versions 1.0.0 dated 2015-06-18 and 1.1.0 dated 2016-03-14

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Package RODBCDBI updated to version 0.1.1 with previous version 0.1 dated 2015-12-02

Title: Provides Access to Databases Through the ODBC Interface
Description: An implementation of R's DBI interface using ODBC package as a back-end. This allows R to connect to any DBMS that has a ODBC driver.
Author: Nagi Teramo [aut, cre], Shinichi Takayanagi [aut]
Maintainer: Nagi Teramo <teramonagi@gmail.com>

Diff between RODBCDBI versions 0.1 dated 2015-12-02 and 0.1.1 dated 2016-03-14

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New package RMediation with initial version 1.1.4
Package: RMediation
Type: Package
Title: Mediation Analysis Confidence Intervals
Version: 1.1.4
Date: 2016-3-12
Author: Davood Tofighi <dtofighi@unm.com> and David P. MacKinnon <davidpm@asu.edu>
Maintainer: Davood Tofighi <dtofighi@unm.edu>
Depends: R (>= 2.11.0), base, MASS, lavaan, e1071
Description: We provide functions to compute confidence intervals (CIs) for a well-defined nonlinear function of the model parameters (e.g., product of k coefficients) in single--level and multilevel structural equation models.
License: GPL-2
URL: http://amp.gatech.edu/RMediation http://amp.gatech.edu/MonteCarlo http://www.public.asu.edu/~davidpm/ripl/Prodclin
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-03-13 21:52:40 UTC; Davood
Repository: CRAN
Date/Publication: 2016-03-14 07:57:49

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Package plotly updated to version 3.4.1 with previous version 2.0.16 dated 2015-12-20

Title: Create Interactive Web Graphics via 'plotly.js'
Description: Easily translate 'ggplot2' graphs to an interactive web-based version and/or create custom web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.
Author: Carson Sievert [aut, cre], Chris Parmer [aut, cph], Toby Hocking [aut], Scott Chamberlain [aut], Karthik Ram [aut], Marianne Corvellec [aut], Pedro Despouy [aut]
Maintainer: Carson Sievert <cpsievert1@gmail.com>

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Package minval updated to version 0.2 with previous version 0.1 dated 2016-02-16

Title: MINimal VALidation for Stoichiometric Reactions
Description: For a given set of stoichiometric reactions, this package evaluates the mass balance and extracts all reactants, products, orphan metabolites, metabolite names and compartments. Also are included some options to check the compound names associated to Chemical Entities of Biological Interest (ChEBI) database <https://www.ebi.ac.uk/chebi>.
Author: Daniel Osorio [aut,cre], Janneth Gonzalez [aut], Andres Pinzon-Velasco [aut]
Maintainer: Daniel Osorio <dcosorioh@unal.edu.co>

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Package logisticPCA updated to version 0.2 with previous version 0.1 dated 2015-10-05

Title: Binary Dimensionality Reduction
Description: Dimensionality reduction techniques for binary data including logistic PCA.
Author: Andrew J. Landgraf
Maintainer: Andrew J. Landgraf <andland@gmail.com>

Diff between logisticPCA versions 0.1 dated 2015-10-05 and 0.2 dated 2016-03-14

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New package growthrates with initial version 0.6.5
Package: growthrates
Type: Package
Title: Estimate Growth Rates from Experimental Data
Version: 0.6.5
Date: 2016-03-12
LazyData: yes
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Description: A collection of methods to determine growth rates from experimental data, in particular from batch experiments and plate reader trials.
Depends: lattice, deSolve
Imports: stats, graphics, methods, parallel, utils, FME
License: GPL (>= 2)
URL: https://github.com/tpetzoldt/growthrates
VignetteBuilder: knitr
Suggests: knitr
RoxygenNote: 5.0.1
Collate: 'aaa_growthmodel-class.R' 'aab_growthmodel-constructor.R' 'aac_classes.R' 'aad_set_generics.R' 'all_easylinear.R' 'all_growthmodels.R' 'all_splines.R' 'bactgrowth.R' 'cost.R' 'extract.R' 'fit_easylinear.R' 'fit_growthmodel.R' 'fit_spline.R' 'grow_baranyi.R' 'grow_exponential.R' 'grow_genlogistic.R' 'grow_gompertz.R' 'grow_huang.R' 'grow_logistic.R' 'grow_richards.R' 'grow_twostep.R' 'growthrates-package.R' 'lm_window.R' 'methods.R' 'multisplit.R' 'names.R' 'parse_formula.R' 'parse_formula_nonlin.R' 'plot.R' 'utilities.R'
NeedsCompilation: yes
Packaged: 2016-03-13 20:14:27 UTC; user
Repository: CRAN
Date/Publication: 2016-03-14 07:54:21

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Package funModeling updated to version 1.1 with previous version 1.0 dated 2016-02-07

Title: Learning Data Cleaning, Visual Analysis and Model Performance
Description: Learn data cleaning, visual data analysis and model performance assessment (KS, AUC and ROC), package core is in the vignette documentation explaining last topics as a tutorial.
Author: Pablo Casas
Maintainer: Pablo Casas <pabloc@datascienceheroes.com>

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Package curvHDR updated to version 1.1-0 with previous version 1.0-3 dated 2011-12-23

Title: Filtering of Flow Cytometry Samples
Description: Filtering, also known as gating, of flow cytometry samples using the curvHDR method.
Author: Matt Wand [aut, cre], George Luta [aut], Ulrike Naumann [aut], Mathew W. McLean [ctb], Dai Feng [ctb], Luke Tierney [ctb], Florian Hahne [ctb]
Maintainer: Matt Wand <matt.wand@uts.edu.au>

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