Title: Supervised Component Generalized Linear Regression
Description: The Fisher Scoring Algorithm is extended so as to combine Partial
Least Squares regression with Generalized Linear Model estimation in the
multivariate context.
Author: Guillaume Cornu [cre, aut],
Frederic Mortier [aut],
Catherine Trottier [aut],
Xavier Bry [aut]
Maintainer: Guillaume Cornu <gcornu@cirad.fr>
Diff between SCGLR versions 2.0.2 dated 2015-02-16 and 2.0.3 dated 2016-03-16
DESCRIPTION | 19 ++++++---- MD5 | 64 ++++++++++++++++++------------------ NAMESPACE | 21 ++++++++++- NEWS | 5 ++ R/infoCriterion.r | 2 + R/metric.r | 1 R/multivariateGlm.fit.r | 1 R/multivariateGlm.r | 3 + R/multivariatePredictGlm.r | 2 + R/package.r | 2 - R/plot.r | 74 ++++++++++++++++++++++++++++++++++-------- R/scglr.r | 5 ++ R/scglrCrossVal.r | 5 ++ R/summary.r | 2 + build/vignette.rds |binary inst/doc/scglrVignettes.R | 11 ------ inst/doc/scglrVignettes.pdf |binary man/barplot.SCGLR.Rd | 8 ++-- man/critConvergence.Rd | 4 +- man/customize.Rd | 2 - man/genus.Rd | 12 +++--- man/infoCriterion.Rd | 8 ++-- man/method.Rd | 2 - man/multivariateFormula.Rd | 2 - man/multivariateGlm.Rd | 16 ++++----- man/multivariatePredictGlm.Rd | 12 +++--- man/pairs.SCGLR.Rd | 2 - man/plot.SCGLR.Rd | 4 +- man/print.SCGLR.Rd | 2 - man/scglr-package.Rd | 11 ++---- man/scglr.Rd | 16 ++++----- man/scglrCrossVal.Rd | 16 ++++----- man/summary.SCGLR.Rd | 2 - 33 files changed, 209 insertions(+), 127 deletions(-)
Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre],
Matthieu Stigler [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between rsdmx versions 0.5-2 dated 2016-03-15 and 0.5-3 dated 2016-03-16
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/SDMXGenericData-methods.R | 9 +++++---- R/rsdmx.R | 4 ++-- README.md | 2 +- inst/doc/quickstart.Rmd | 2 +- inst/doc/quickstart.html | 2 +- man/rsdmx.Rd | 4 ++-- vignettes/quickstart.Rmd | 2 +- 9 files changed, 25 insertions(+), 24 deletions(-)
Title: Joint Estimation in Linear Quantile Regression
Description: Joint estimation of quantile specific intercept and slope parameters in a linear regression setting.
Author: Surya Tokdar <tokdar@stat.duke.edu>
Maintainer: Surya Tokdar <tokdar@stat.duke.edu>
Diff between qrjoint versions 0.1-1 dated 2015-07-14 and 1.0-0 dated 2016-03-16
DESCRIPTION | 8 ++--- MD5 | 8 ++--- R/qrjoint.R | 80 ++++++++++++++++++++++++++++++--------------------------- man/qrjoint.Rd | 2 - src/qrjoint.c | 8 +++-- 5 files changed, 57 insertions(+), 49 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method.
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 1.7.4 dated 2015-12-26 and 1.7.5 dated 2016-03-16
DESCRIPTION | 8 ++++---- MD5 | 42 +++++++++++++++++++++--------------------- NEWS | 11 +++++++++-- R/Contlcmm.R | 6 +++--- R/Jointlcmm.R | 6 +++--- R/Ordlcmm.R | 6 +++--- R/hlme.R | 8 ++++---- R/lcmm.R | 10 +++++----- R/multlcmm.R | 15 ++++++++++++--- R/plotfit.R | 2 +- R/predictL.multlcmm.R | 23 ++++++++++++++++++++++- R/predictY.multlcmm.R | 17 +++++++++++++++++ R/summary.Jointlcmm.R | 4 ++-- R/summary.hlme.R | 6 +++--- R/summary.lcmm.R | 4 ++-- R/summary.multlcmm.R | 16 +++++++++++++--- man/Jointlcmm.Rd | 10 ++++++++-- man/hlme.Rd | 14 ++++++++++---- man/lcmm-package.Rd | 6 +++--- man/lcmm.Rd | 19 +++++++++++++------ man/multlcmm.Rd | 10 +++++++--- src/hetmixCont.f90 | 4 +++- 22 files changed, 168 insertions(+), 79 deletions(-)
Title: Scalable Rejection Sampling for Bayesian Hierarchical Models
Description: Functions for implementing the Braun and Damien (2015) rejection
sampling algorithm for Bayesian hierarchical models. The algorithm generates
posterior samples in parallel, and is scalable when the individual units are
conditionally independent.
Author: Michael Braun [aut, cre, cph]
Maintainer: Michael Braun <braunm@smu.edu>
Diff between bayesGDS versions 0.6.1 dated 2015-03-31 and 0.6.2 dated 2016-03-16
DESCRIPTION | 20 ++- MD5 | 31 +++--- NAMESPACE | 3 NEWS | 13 +- NEWS.md |only R/bayesGDS-package.R | 3 build/vignette.rds |binary inst/vignette_sources/binary/binary.Rnw | 15 +- inst/vignette_sources/binary/binary_chunks.R | 2 man/Deprecated.Rd | 29 +---- man/bayesGDS-package.Rd | 14 -- man/binary-data.Rd | 10 - man/binary.Rd | 12 -- man/get.LML.Rd | 52 ++++------ man/get.cutoffs.Rd | 22 ++-- man/sample.GDS.Rd | 139 +++++++++++++-------------- tests/testthat/test_binary.R | 9 - 17 files changed, 178 insertions(+), 196 deletions(-)
More information about MatrixCorrelation at CRAN
Permanent link
Title: GPU Functions for R Objects
Description: Provides GPU enabled functions for R objects in a simple and
approachable manner. New 'gpu*' and 'vcl*' classes have been provided to
wrap typical R objects (e.g. vector, matrix), in both host and device
spaces, to mirror typical R syntax without the need to know OpenCL.
Author: Charles Determan Jr.
Maintainer: Charles Determan Jr. <cdetermanjr@gmail.com>
Diff between gpuR versions 1.0.1 dated 2015-11-21 and 1.1.0 dated 2016-03-16
gpuR-1.0.1/gpuR/configure.ac |only gpuR-1.0.1/gpuR/inst/include/gpuR/dynEigen.hpp |only gpuR-1.0.1/gpuR/inst/include/gpuR/vcl_helpers.hpp |only gpuR-1.0.1/gpuR/man/Arith-gpuMatrix-gpuMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/Arith-gpuVector-gpuVector-method.Rd |only gpuR-1.0.1/gpuR/man/Arith-vclMatrix-vclMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/Arith-vclVector-vclVector-method.Rd |only gpuR-1.0.1/gpuR/man/Compare-gpuVector-vector-method.Rd |only gpuR-1.0.1/gpuR/man/Compare-vector-gpuVector-method.Rd |only gpuR-1.0.1/gpuR/man/Math-gpuMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/Math-gpuVector-method.Rd |only gpuR-1.0.1/gpuR/man/Math-vclMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/Math-vclVector-method.Rd |only gpuR-1.0.1/gpuR/man/dim-gpuMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/dim-vclMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/extract-gpuMatrix.Rd |only gpuR-1.0.1/gpuR/man/extract-gpuVector.Rd |only gpuR-1.0.1/gpuR/man/extract-vclMatrix.Rd |only gpuR-1.0.1/gpuR/man/extract-vclVector.Rd |only gpuR-1.0.1/gpuR/man/gpuInfo.Rd |only gpuR-1.0.1/gpuR/man/gpuMatrix.cov.Rd |only gpuR-1.0.1/gpuR/man/gpuVector-prods.Rd |only gpuR-1.0.1/gpuR/man/grapes-o-grapes-gpuVector-gpuVector-method.Rd |only gpuR-1.0.1/gpuR/man/grapes-o-grapes-vclVector-vclVector-method.Rd |only gpuR-1.0.1/gpuR/man/grapes-times-grapes-gpuMatrix-gpuMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/grapes-times-grapes-vclMatrix-vclMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/grapes-times-grapes-vclVector-vclVector-method.Rd |only gpuR-1.0.1/gpuR/man/log-gpuMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/log-vclMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/log-vclVector-method.Rd |only gpuR-1.0.1/gpuR/man/nrow.gpuMatrix.Rd |only gpuR-1.0.1/gpuR/man/nrow.vclMatrix.Rd |only gpuR-1.0.1/gpuR/man/typeof-gpuMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/typeof-gpuVector-method.Rd |only gpuR-1.0.1/gpuR/man/typeof-vclMatrix-method.Rd |only gpuR-1.0.1/gpuR/man/typeof-vclVector-method.Rd |only gpuR-1.0.1/gpuR/man/vclMatrix.cov.Rd |only gpuR-1.0.1/gpuR/src/Makevars.in |only gpuR-1.0.1/gpuR/src/detectCPUs.cpp |only gpuR-1.0.1/gpuR/src/detectGPUs.cpp |only gpuR-1.0.1/gpuR/src/detectPlatforms.cpp |only gpuR-1.0.1/gpuR/src/device_has_double.cpp |only gpuR-1.0.1/gpuR/src/dynEigen.cpp |only gpuR-1.0.1/gpuR/src/gpuInfo.cpp |only gpuR-1.0.1/gpuR/src/platformInfo.cpp |only gpuR-1.0.1/gpuR/tools |only gpuR-1.1.0/gpuR/DESCRIPTION | 17 gpuR-1.1.0/gpuR/MD5 | 409 gpuR-1.1.0/gpuR/NAMESPACE | 13 gpuR-1.1.0/gpuR/R/RcppExports.R | 373 gpuR-1.1.0/gpuR/R/class-gpuMatrix.R | 25 gpuR-1.1.0/gpuR/R/class-gpuVector.R | 34 gpuR-1.1.0/gpuR/R/class-vclMatrix.R | 26 gpuR-1.1.0/gpuR/R/class-vclVector.R | 30 gpuR-1.1.0/gpuR/R/eigen.R | 8 gpuR-1.1.0/gpuR/R/generics.R | 73 gpuR-1.1.0/gpuR/R/gpuMatrix.R | 277 gpuR-1.1.0/gpuR/R/gpuVector.R | 90 gpuR-1.1.0/gpuR/R/methods-gpuMatrix.R | 506 + gpuR-1.1.0/gpuR/R/methods-gpuVector.R | 235 gpuR-1.1.0/gpuR/R/methods-vclMatrix.R | 512 + gpuR-1.1.0/gpuR/R/methods-vclVector.R | 187 gpuR-1.1.0/gpuR/R/print.R | 1 gpuR-1.1.0/gpuR/R/typeof.R | 56 gpuR-1.1.0/gpuR/R/utils.R | 2 gpuR-1.1.0/gpuR/R/vclMatrix.R | 146 gpuR-1.1.0/gpuR/R/vclVector.R | 82 gpuR-1.1.0/gpuR/R/wrappers-gpuVector.R | 497 + gpuR-1.1.0/gpuR/R/wrappers-utils.R | 57 gpuR-1.1.0/gpuR/R/wrappers-vclMatrix.R | 767 + gpuR-1.1.0/gpuR/R/wrappers-vclVector.R | 346 gpuR-1.1.0/gpuR/R/wrappers.R | 528 + gpuR-1.1.0/gpuR/R/zzz.R | 11 gpuR-1.1.0/gpuR/README.md | 20 gpuR-1.1.0/gpuR/build/vignette.rds |binary gpuR-1.1.0/gpuR/configure | 4304 ---------- gpuR-1.1.0/gpuR/inst/NEWS.Rd | 26 gpuR-1.1.0/gpuR/inst/doc/gpuR.R | 20 gpuR-1.1.0/gpuR/inst/doc/gpuR.Rnw | 120 gpuR-1.1.0/gpuR/inst/doc/gpuR.pdf |binary gpuR-1.1.0/gpuR/inst/include/gpuR/dynEigenMat.hpp |only gpuR-1.1.0/gpuR/inst/include/gpuR/dynEigenVec.hpp | 41 gpuR-1.1.0/gpuR/inst/include/gpuR/dynVCLMat.hpp |only gpuR-1.1.0/gpuR/inst/include/gpuR/dynVCLVec.hpp |only gpuR-1.1.0/gpuR/inst/include/gpuR/eigen_helpers.hpp | 107 gpuR-1.1.0/gpuR/inst/testWithGPU |only gpuR-1.1.0/gpuR/man/Arith-methods.Rd |only gpuR-1.1.0/gpuR/man/Compare-methods.Rd |only gpuR-1.1.0/gpuR/man/Math-methods.Rd |only gpuR-1.1.0/gpuR/man/Summary-methods.Rd |only gpuR-1.1.0/gpuR/man/as.gpuMatrix-methods.Rd | 4 gpuR-1.1.0/gpuR/man/as.gpuVector-methods.Rd | 4 gpuR-1.1.0/gpuR/man/cov-methods.Rd |only gpuR-1.1.0/gpuR/man/currentContext.Rd |only gpuR-1.1.0/gpuR/man/currentDevice.Rd |only gpuR-1.1.0/gpuR/man/currentPlatform.Rd |only gpuR-1.1.0/gpuR/man/detectCPUs.Rd | 2 gpuR-1.1.0/gpuR/man/detectGPUs.Rd | 2 gpuR-1.1.0/gpuR/man/detectPlatforms.Rd | 2 gpuR-1.1.0/gpuR/man/deviceHasDouble.Rd | 2 gpuR-1.1.0/gpuR/man/deviceInfo.Rd |only gpuR-1.1.0/gpuR/man/dgpuMatrix-class.Rd | 4 gpuR-1.1.0/gpuR/man/dgpuVector-class.Rd | 2 gpuR-1.1.0/gpuR/man/dim-methods.Rd |only gpuR-1.1.0/gpuR/man/dist-vclMatrix.Rd | 33 gpuR-1.1.0/gpuR/man/dvclMatrix-class.Rd | 4 gpuR-1.1.0/gpuR/man/dvclVector-class.Rd | 2 gpuR-1.1.0/gpuR/man/eigen-gpuMatrix.Rd | 8 gpuR-1.1.0/gpuR/man/extract-methods.Rd |only gpuR-1.1.0/gpuR/man/fgpuMatrix-class.Rd | 4 gpuR-1.1.0/gpuR/man/fgpuVector-class.Rd | 2 gpuR-1.1.0/gpuR/man/fvclMatrix-class.Rd | 4 gpuR-1.1.0/gpuR/man/fvclVector-class.Rd | 2 gpuR-1.1.0/gpuR/man/gpuMatrix-class.Rd | 21 gpuR-1.1.0/gpuR/man/gpuMatrix-crossprod.Rd | 2 gpuR-1.1.0/gpuR/man/gpuMatrix-methods.Rd | 15 gpuR-1.1.0/gpuR/man/gpuMatrix.colSums.Rd | 2 gpuR-1.1.0/gpuR/man/gpuR-block.Rd |only gpuR-1.1.0/gpuR/man/gpuR-deepcopy.Rd |only gpuR-1.1.0/gpuR/man/gpuR-package.Rd | 24 gpuR-1.1.0/gpuR/man/gpuR-slice.Rd |only gpuR-1.1.0/gpuR/man/gpuVector-class.Rd | 14 gpuR-1.1.0/gpuR/man/gpuVector-methods.Rd | 6 gpuR-1.1.0/gpuR/man/grapes-o-grapes-methods.Rd |only gpuR-1.1.0/gpuR/man/grapes-times-grapes-methods.Rd |only gpuR-1.1.0/gpuR/man/has_cpu_skip.Rd | 2 gpuR-1.1.0/gpuR/man/has_double_skip.Rd | 2 gpuR-1.1.0/gpuR/man/has_gpu_skip.Rd | 2 gpuR-1.1.0/gpuR/man/igpuMatrix-class.Rd | 4 gpuR-1.1.0/gpuR/man/igpuVector-class.Rd | 2 gpuR-1.1.0/gpuR/man/ivclMatrix-class.Rd | 4 gpuR-1.1.0/gpuR/man/ivclVector-class.Rd | 2 gpuR-1.1.0/gpuR/man/length-methods.Rd | 8 gpuR-1.1.0/gpuR/man/listContexts.Rd |only gpuR-1.1.0/gpuR/man/log-methods.Rd |only gpuR-1.1.0/gpuR/man/nrow-gpuR.Rd |only gpuR-1.1.0/gpuR/man/platformInfo.Rd | 2 gpuR-1.1.0/gpuR/man/print.gpuMatrix.Rd | 4 gpuR-1.1.0/gpuR/man/setContext.Rd |only gpuR-1.1.0/gpuR/man/typeof-gpuR-methods.Rd |only gpuR-1.1.0/gpuR/man/vclMatrix-class.Rd | 19 gpuR-1.1.0/gpuR/man/vclMatrix-crossprod.Rd | 2 gpuR-1.1.0/gpuR/man/vclMatrix-methods.Rd | 12 gpuR-1.1.0/gpuR/man/vclMatrix.colSums.Rd | 2 gpuR-1.1.0/gpuR/man/vclVector-class.Rd | 14 gpuR-1.1.0/gpuR/man/vclVector-methods.Rd | 4 gpuR-1.1.0/gpuR/src/Makevars.win | 5 gpuR-1.1.0/gpuR/src/RcppExports.cpp | 1360 ++- gpuR-1.1.0/gpuR/src/context.cpp |only gpuR-1.1.0/gpuR/src/device.cpp |only gpuR-1.1.0/gpuR/src/dynEigenMat.cpp |only gpuR-1.1.0/gpuR/src/dynEigenVec.cpp | 42 gpuR-1.1.0/gpuR/src/dynVCLMat.cpp |only gpuR-1.1.0/gpuR/src/dynVCLVec.cpp |only gpuR-1.1.0/gpuR/src/gpuEigenPtr.cpp | 415 gpuR-1.1.0/gpuR/src/gpuMatrix_iaxpy.cpp | 40 gpuR-1.1.0/gpuR/src/gpuMatrix_igemm.cpp | 51 gpuR-1.1.0/gpuR/src/gpuVector_iaxpy.cpp | 24 gpuR-1.1.0/gpuR/src/gpu_vector_algebra.cpp | 17 gpuR-1.1.0/gpuR/src/platform.cpp |only gpuR-1.1.0/gpuR/src/trunc_gpuMat.cpp | 31 gpuR-1.1.0/gpuR/src/utils-vcl.cpp | 28 gpuR-1.1.0/gpuR/src/utils.cpp | 147 gpuR-1.1.0/gpuR/src/vclPtr.cpp | 507 - gpuR-1.1.0/gpuR/src/vienna_blas1.cpp | 4206 +++++++-- gpuR-1.1.0/gpuR/src/vienna_blas3.cpp | 354 gpuR-1.1.0/gpuR/src/vienna_eigen.cpp | 94 gpuR-1.1.0/gpuR/src/vienna_stats.cpp | 635 + gpuR-1.1.0/gpuR/tests/testthat/test_cpu_deepcopy.R |only gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuMatrixBlock_algebra.R |only gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuMatrix_algebra.R | 446 - gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuMatrix_classes.R | 133 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuMatrix_cov.R | 4 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuMatrix_dist.R | 172 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuMatrix_eigen.R | 4 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuMatrix_math.R | 80 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuMatrix_row_col.R | 255 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuMatrix_utils.R | 13 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuVector_algebra.R | 499 - gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuVector_classes.R | 58 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuVector_math.R | 204 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_gpuVector_utils.R | 4 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclMatrixBlock_algebra.R |only gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclMatrix_algebra.R | 72 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclMatrix_classes.R | 95 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclMatrix_cov.R | 4 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclMatrix_dist.R | 173 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclMatrix_eigen.R | 4 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclMatrix_row_col.R | 236 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclMatrtix_math.R | 86 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclMatrtix_utils.R | 4 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclVector_algebra.R | 404 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclVector_classes.R | 68 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclVector_math.R | 111 gpuR-1.1.0/gpuR/tests/testthat/test_cpu_vclVector_utils.R | 4 gpuR-1.1.0/gpuR/tests/testthat/test_deepcopy.R |only gpuR-1.1.0/gpuR/tests/testthat/test_gpuMatrixBlock_algebra.R |only gpuR-1.1.0/gpuR/tests/testthat/test_gpuMatrix_algebra.R | 392 gpuR-1.1.0/gpuR/tests/testthat/test_gpuMatrix_classes.R | 182 gpuR-1.1.0/gpuR/tests/testthat/test_gpuMatrix_dist.R | 169 gpuR-1.1.0/gpuR/tests/testthat/test_gpuMatrix_math.R | 73 gpuR-1.1.0/gpuR/tests/testthat/test_gpuMatrix_row_col.R | 251 gpuR-1.1.0/gpuR/tests/testthat/test_gpuMatrix_utils.R | 9 gpuR-1.1.0/gpuR/tests/testthat/test_gpuVector_algebra.R | 382 gpuR-1.1.0/gpuR/tests/testthat/test_gpuVector_classes.R | 63 gpuR-1.1.0/gpuR/tests/testthat/test_gpuVector_math.R | 205 gpuR-1.1.0/gpuR/tests/testthat/test_vclMatrixBlock_algebra.R |only gpuR-1.1.0/gpuR/tests/testthat/test_vclMatrix_algebra.R | 487 - gpuR-1.1.0/gpuR/tests/testthat/test_vclMatrix_classes.R | 88 gpuR-1.1.0/gpuR/tests/testthat/test_vclMatrix_dist.R | 172 gpuR-1.1.0/gpuR/tests/testthat/test_vclMatrix_eigen.R | 8 gpuR-1.1.0/gpuR/tests/testthat/test_vclMatrix_math.R | 70 gpuR-1.1.0/gpuR/tests/testthat/test_vclMatrix_row_col.R | 239 gpuR-1.1.0/gpuR/tests/testthat/test_vclVector_algebra.R | 395 gpuR-1.1.0/gpuR/tests/testthat/test_vclVector_classes.R | 67 gpuR-1.1.0/gpuR/tests/testthat/test_vclVector_math.R | 103 gpuR-1.1.0/gpuR/vignettes/gpuR-concordance.tex | 2 gpuR-1.1.0/gpuR/vignettes/gpuR.Rnw | 120 218 files changed, 17223 insertions(+), 7539 deletions(-)
Title: Building Diversity Models from Multiple Species Occupancy Models
Description: Predictions of alpha diversity are fitted from presence data, first abundance is modeled from occupancy models and then, several diversity indices are calculated and finally GLM models are used to predict diversity in different environments and select priority areas.
Author: Derek Corcoran [aut, cre],
Dylan Kesler [aut],
Elisabeth Webb [aut],
Nicole Michel [ctb]
Maintainer: Derek Corcoran <derek.corcoran.barrios@gmail.com>
Diff between DiversityOccupancy versions 1.0.1 dated 2016-03-11 and 1.0.2 dated 2016-03-16
DESCRIPTION | 14 +++--- MD5 | 13 +++--- NAMESPACE | 2 R/DiversityOccu.R | 94 ++++++++++++++++++++++++++++++++++++++++------ inst/doc/my-vignette.html | 4 - man/batchoccu.Rd | 11 ++++- man/diversityoccu.Rd | 6 ++ man/occupancy.predict.Rd |only 8 files changed, 115 insertions(+), 29 deletions(-)
More information about DiversityOccupancy at CRAN
Permanent link
Title: Directional Statistics
Description: A collection of R functions for directional data analysis.
Author: Michail Tsagris, Giorgos Athineou
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Directional versions 1.7.5 dated 2016-02-12 and 1.8 dated 2016-03-16
Directional-1.7.5/Directional/R/vmfkde.tune_2.R |only Directional-1.7.5/Directional/R/vmkde.tune_2.R |only Directional-1.7.5/Directional/man/circ.cor2.Rd |only Directional-1.7.5/Directional/man/embed.aov.Rd |only Directional-1.7.5/Directional/man/embed.circaov.Rd |only Directional-1.7.5/Directional/man/het.aov.Rd |only Directional-1.7.5/Directional/man/het.circaov.Rd |only Directional-1.7.5/Directional/man/lr.aov.Rd |only Directional-1.7.5/Directional/man/lr.circaov.Rd |only Directional-1.7.5/Directional/man/vmfkde.tune_2.Rd |only Directional-1.7.5/Directional/man/vmkde.tune_2.Rd |only Directional-1.8/Directional/DESCRIPTION | 10 - Directional-1.8/Directional/MD5 | 138 ++++++++--------- Directional-1.8/Directional/NAMESPACE | 1 Directional-1.8/Directional/R/bic.mixvmf.R | 30 ++- Directional-1.8/Directional/R/circ.cor1.R | 12 - Directional-1.8/Directional/R/circ.cor2.R | 24 +- Directional-1.8/Directional/R/circ.summary.R | 30 +-- Directional-1.8/Directional/R/circlin.cor.R | 14 - Directional-1.8/Directional/R/conc.test.R | 6 Directional-1.8/Directional/R/dirknn.R | 45 ++--- Directional-1.8/Directional/R/dirknn.tune.R | 94 ++++++----- Directional-1.8/Directional/R/embed.aov.R | 12 - Directional-1.8/Directional/R/embed.circaov.R | 10 - Directional-1.8/Directional/R/f.rbing.R | 32 ++- Directional-1.8/Directional/R/fb.saddle.R | 21 +- Directional-1.8/Directional/R/fishkent.R | 14 - Directional-1.8/Directional/R/hcf.aov.R | 16 - Directional-1.8/Directional/R/hcf.circaov.R | 20 +- Directional-1.8/Directional/R/het.aov.R | 10 - Directional-1.8/Directional/R/het.circaov.R | 14 - Directional-1.8/Directional/R/knn.reg.R |only Directional-1.8/Directional/R/knnreg.tune.R |only Directional-1.8/Directional/R/kuiper.R |only Directional-1.8/Directional/R/lambert.R | 8 Directional-1.8/Directional/R/lambert.inv.R | 10 - Directional-1.8/Directional/R/lr.aov.R | 24 +- Directional-1.8/Directional/R/lr.circaov.R | 10 - Directional-1.8/Directional/R/meandir.test.R | 24 +- Directional-1.8/Directional/R/mix.vmf.R | 33 ++-- Directional-1.8/Directional/R/rbingham.R | 4 Directional-1.8/Directional/R/rfb.R | 21 +- Directional-1.8/Directional/R/rot.matrix.R | 2 Directional-1.8/Directional/R/rotation.R | 14 - Directional-1.8/Directional/R/rvmf.R | 51 +++--- Directional-1.8/Directional/R/rvnomises.R | 12 - Directional-1.8/Directional/R/spher.cor.R | 12 - Directional-1.8/Directional/R/spher.reg.R | 14 - Directional-1.8/Directional/R/spml.reg.R | 55 +++--- Directional-1.8/Directional/R/vm.kde.R | 46 +++-- Directional-1.8/Directional/R/vmf.da.R | 20 +- Directional-1.8/Directional/R/vmf.kde.R | 44 +++-- Directional-1.8/Directional/R/vmf.kerncontour.R | 23 +- Directional-1.8/Directional/R/vmfda.pred.R | 10 - Directional-1.8/Directional/R/vmfkde.tune.R | 25 +-- Directional-1.8/Directional/R/vmkde.tune.R | 45 +---- Directional-1.8/Directional/R/watson.R |only Directional-1.8/Directional/man/Directional-package.Rd | 4 Directional-1.8/Directional/man/bic.mixvmf.Rd | 14 + Directional-1.8/Directional/man/circ.cor1.Rd | 33 +++- Directional-1.8/Directional/man/circ.summary.Rd | 2 Directional-1.8/Directional/man/circlin.cor.Rd | 4 Directional-1.8/Directional/man/conc.test.Rd | 4 Directional-1.8/Directional/man/dirknn.tune.Rd | 54 ++++-- Directional-1.8/Directional/man/hcf.aov.Rd | 40 +++- Directional-1.8/Directional/man/hcf.circaov.Rd | 38 +++- Directional-1.8/Directional/man/knn.reg.Rd |only Directional-1.8/Directional/man/knnreg.tune.Rd |only Directional-1.8/Directional/man/kuiper.Rd |only Directional-1.8/Directional/man/mix.vmf.Rd | 12 + Directional-1.8/Directional/man/rvmf.Rd | 2 Directional-1.8/Directional/man/rvonmises.Rd | 2 Directional-1.8/Directional/man/spher.reg.Rd | 2 Directional-1.8/Directional/man/spml.reg.Rd | 24 -- Directional-1.8/Directional/man/tang.conc.Rd | 2 Directional-1.8/Directional/man/vm.kde.Rd | 7 Directional-1.8/Directional/man/vmf.kde.Rd | 2 Directional-1.8/Directional/man/vmfkde.tune.Rd | 31 +-- Directional-1.8/Directional/man/vmkde.tune.Rd | 32 +-- 79 files changed, 741 insertions(+), 628 deletions(-)
Title: Request Data from the U.S. Bureau of Labor Statistics API
Description: Allows users to request data for one or multiple series through the
U.S. Bureau of Labor Statistics API. Users provide parameters as specified in
http://www.bls.gov/developers/api_signature.htm and the function returns a JSON
string.
Author: Michael Silva <mike.a.silva@gmail.com>
Maintainer: Michael Silva <mike.a.silva@gmail.com>
Diff between blsAPI versions 0.1.2 dated 2015-09-10 and 0.1.3 dated 2016-03-16
DESCRIPTION | 11 ++++++++--- MD5 | 10 ++++++---- NAMESPACE | 4 +++- R/blsAPI.R | 43 ++++++++++++++++++++++++++----------------- R/blsQCEW.R |only man/blsAPI.Rd | 15 ++++++++++----- man/blsQCEW.Rd |only 7 files changed, 53 insertions(+), 30 deletions(-)
Title: Gaussian Mixture Models (GMM)
Description: Multimodal distributions can be modelled as a mixture of components. The model is derived using the Pareto Density Estimation (PDE) for an estimation of the pdf. PDE has been designed in particular to identify groups/classes in a dataset. Precise limits for the classes can be calculated using the theorem of Bayes. Verification of the model is possible by QQ plot, Chi-squared test and Kolmogorov-Smirnov test.
Author: Michael Thrun, Onno Hansen-Goos, Rabea Griese, Catharina Lippmann, Jorn Lotsch, Alfred Ultsch
Maintainer: Michael Thrun <mthrun@mathematik.uni-marburg.de>
Diff between AdaptGauss versions 1.1.0 dated 2015-10-14 and 1.2.0 dated 2016-03-16
AdaptGauss-1.1.0/AdaptGauss/R/BayesForMixes.R |only AdaptGauss-1.1.0/AdaptGauss/R/Intersect2Mixes.R |only AdaptGauss-1.1.0/AdaptGauss/R/PlotGaussMixesAndBoundaries.R |only AdaptGauss-1.1.0/AdaptGauss/R/PlotGaussianMixtures.R |only AdaptGauss-1.1.0/AdaptGauss/R/paretoDensityEstimationForGMM.R |only AdaptGauss-1.1.0/AdaptGauss/R/paretoRadiusForGMM.R |only AdaptGauss-1.1.0/AdaptGauss/R/qqplotGMM.R |only AdaptGauss-1.1.0/AdaptGauss/R/randomLogGMM.R |only AdaptGauss-1.1.0/AdaptGauss/man/BayesForMixes.Rd |only AdaptGauss-1.1.0/AdaptGauss/man/Intersect2Mixes.Rd |only AdaptGauss-1.1.0/AdaptGauss/man/PlotGaussMixesAndBoundaries.Rd |only AdaptGauss-1.1.0/AdaptGauss/man/PlotGaussianMixtures.Rd |only AdaptGauss-1.1.0/AdaptGauss/man/paretoDensityEstimationForGMM.Rd |only AdaptGauss-1.1.0/AdaptGauss/man/paretoRadiusForGMM.Rd |only AdaptGauss-1.2.0/AdaptGauss/DESCRIPTION | 10 AdaptGauss-1.2.0/AdaptGauss/MD5 | 60 +-- AdaptGauss-1.2.0/AdaptGauss/NAMESPACE | 4 AdaptGauss-1.2.0/AdaptGauss/R/AdaptGauss.R | 197 +++++----- AdaptGauss-1.2.0/AdaptGauss/R/Bayes4Mixtures.R |only AdaptGauss-1.2.0/AdaptGauss/R/BayesDecisionBoundaries.R | 2 AdaptGauss-1.2.0/AdaptGauss/R/Chi2testMixtures.R | 8 AdaptGauss-1.2.0/AdaptGauss/R/InformationCriteria4GMM.R |only AdaptGauss-1.2.0/AdaptGauss/R/Intersect2Mixtures.R |only AdaptGauss-1.2.0/AdaptGauss/R/KStestMixtures.R | 8 AdaptGauss-1.2.0/AdaptGauss/R/LikelihoodRatio4Mixtures.R |only AdaptGauss-1.2.0/AdaptGauss/R/LogLikelihood4Mixtures.R |only AdaptGauss-1.2.0/AdaptGauss/R/ParetoDensityEstimation.R |only AdaptGauss-1.2.0/AdaptGauss/R/ParetoRadius.R |only AdaptGauss-1.2.0/AdaptGauss/R/Pdf4Mixtures.R |only AdaptGauss-1.2.0/AdaptGauss/R/PlotMixtures.R |only AdaptGauss-1.2.0/AdaptGauss/R/PlotMixturesAndBoundaries.R |only AdaptGauss-1.2.0/AdaptGauss/R/QQplotGMM.R |only AdaptGauss-1.2.0/AdaptGauss/R/RandomLogGMM.R |only AdaptGauss-1.2.0/AdaptGauss/man/AdaptGauss-package.Rd | 2 AdaptGauss-1.2.0/AdaptGauss/man/Bayes4Mixtures.Rd |only AdaptGauss-1.2.0/AdaptGauss/man/BayesDecisionBoundaries.Rd | 2 AdaptGauss-1.2.0/AdaptGauss/man/ClassifyByDecisionBoundaries.Rd | 2 AdaptGauss-1.2.0/AdaptGauss/man/InformationCriteria4GMM.Rd |only AdaptGauss-1.2.0/AdaptGauss/man/Intersect2Mixtures.Rd |only AdaptGauss-1.2.0/AdaptGauss/man/LikelihoodRatio4Mixtures.Rd |only AdaptGauss-1.2.0/AdaptGauss/man/LogLikelihood4Mixtures.Rd |only AdaptGauss-1.2.0/AdaptGauss/man/OptimalNoBins.Rd | 2 AdaptGauss-1.2.0/AdaptGauss/man/ParetoDensityEstimation.Rd |only AdaptGauss-1.2.0/AdaptGauss/man/ParetoRadius.Rd |only AdaptGauss-1.2.0/AdaptGauss/man/Pdf4Mixtures.Rd |only AdaptGauss-1.2.0/AdaptGauss/man/PlotMixtures.Rd |only AdaptGauss-1.2.0/AdaptGauss/man/PlotMixturesAndBoundaries.Rd |only AdaptGauss-1.2.0/AdaptGauss/man/qqplotGMM.Rd | 11 AdaptGauss-1.2.0/AdaptGauss/man/randomLogGMM.Rd | 8 49 files changed, 166 insertions(+), 150 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.6.500.4.0 dated 2016-01-27 and 0.6.600.4.0 dated 2016-03-16
RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/constants_compat.hpp |only RcppArmadillo-0.6.600.4.0/RcppArmadillo/ChangeLog | 26 + RcppArmadillo-0.6.600.4.0/RcppArmadillo/DESCRIPTION | 8 RcppArmadillo-0.6.600.4.0/RcppArmadillo/MD5 | 108 ++--- RcppArmadillo-0.6.600.4.0/RcppArmadillo/README.md | 2 RcppArmadillo-0.6.600.4.0/RcppArmadillo/build/vignette.rds |binary RcppArmadillo-0.6.600.4.0/RcppArmadillo/configure | 12 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/NEWS.Rd | 15 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/doc/RcppArmadillo-unitTests.pdf |binary RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo | 8 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 6 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 127 +++--- RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp | 6 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 26 - RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/Op_bones.hpp | 4 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/SizeCube_meat.hpp | 14 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/arma_forward.hpp | 6 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/arma_ostream_meat.hpp | 64 +-- RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 4 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_bones.hpp | 4 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 36 - RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 3 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 9 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp.cmake | 9 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/constants.hpp | 2 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/constants_old.hpp |only RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/diskio_meat.hpp | 22 - RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/field_meat.hpp | 49 +- RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_inv.hpp | 6 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_max.hpp | 34 + RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_mean.hpp | 18 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_min.hpp | 34 + RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_misc.hpp | 2 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_shift.hpp |only RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_spsolve.hpp | 6 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_sqrtmat.hpp |only RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_sum.hpp | 19 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/glue_max_bones.hpp | 15 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/glue_max_meat.hpp | 132 ++++++ RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/glue_min_bones.hpp | 15 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/glue_min_meat.hpp | 134 ++++++ RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/glue_solve_meat.hpp | 8 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/gmm_diag_meat.hpp | 8 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_inv_meat.hpp | 12 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_max_bones.hpp | 18 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_max_meat.hpp | 204 +++++++++- RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_mean_bones.hpp | 20 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_mean_meat.hpp | 182 ++++++++ RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_min_bones.hpp | 18 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_min_meat.hpp | 204 +++++++++- RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_shift_bones.hpp |only RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_shift_meat.hpp |only RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_sqrtmat_bones.hpp |only RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_sqrtmat_meat.hpp |only RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_sum_bones.hpp | 19 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/op_sum_meat.hpp | 204 +++++++++- RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/subview_field_bones.hpp | 4 RcppArmadillo-0.6.600.4.0/RcppArmadillo/inst/include/armadillo_bits/subview_field_meat.hpp | 32 + 59 files changed, 1621 insertions(+), 297 deletions(-)
Title: Dendrochronology Program Library in R
Description: Perform tree-ring analyses such as detrending, chronology
building, and cross dating. Read and write standard file formats
used in dendrochronology.
Author: Andy Bunn [aut, cph, cre, trl], Mikko Korpela [aut, trl], Franco Biondi [aut, cph], Filipe Campelo [aut, cph], Pierre MĆ©rian [aut, cph], Fares Qeadan [aut, cph], Christian Zang [aut, cph], Allan Buras [ctb], Jacob Cecile [ctb], Manfred Mudelsee [ctb], Michael Schulz [ctb]
Maintainer: Andy Bunn <andy.bunn@wwu.edu>
Diff between dplR versions 1.6.3 dated 2015-05-30 and 1.6.4 dated 2016-03-16
ChangeLog | 88 +++++++++++++++- DESCRIPTION | 15 +- MD5 | 99 ++++++++++-------- NAMESPACE | 4 R/common.interval.R | 4 R/detrend.R | 35 +++--- R/detrend.series.R | 64 ++++++++++-- R/helpers.R | 6 - R/rasterPlot.R | 206 +++++++++++++++++++++++++++++---------- R/read.crn.R | 6 - R/read.tridas.R | 57 ++++++---- R/read.tucson.R | 6 - R/redfit.R | 12 +- R/rwi.stats.running.R | 4 R/sea.R | 16 ++- R/skel.plot.R | 12 +- R/treeMean.R |only R/wavelet.plot.R | 32 +++++- R/write.compact.R | 9 - R/write.tucson.R | 29 +++-- TODO | 28 +++-- build/vignette.rds |binary data/anos1.rda |binary data/wa082.rda |only inst/doc/chron-dplR.R |only inst/doc/chron-dplR.pdf |only inst/doc/intro-dplR.pdf |binary inst/doc/timeseries-dplR.pdf |binary inst/doc/xdate-dplR.pdf |binary inst/po/fi/LC_MESSAGES/R-dplR.mo |binary man/combine.rwl.Rd | 2 man/detrend.Rd | 16 ++- man/detrend.series.Rd | 37 +++++-- man/rasterPlot.Rd | 147 +++++++++++++++++++++++---- man/read.compact.Rd | 6 - man/read.fh.Rd | 9 - man/read.rwl.Rd | 9 - man/read.tucson.Rd | 6 - man/redfit.Rd | 4 man/sea.Rd | 12 +- man/skel.plot.Rd | 5 man/treeMean.Rd |only man/wa082.Rd |only man/wavelet.plot.Rd | 6 - man/xskel.ccf.plot.Rd | 2 man/xskel.plot.Rd | 2 po/R-dplR.pot | 43 ++++++-- po/R-fi.po | 49 ++++++--- vignettes/chron-dplR.Rnw |only vignettes/dplR.bib | 16 +++ vignettes/dplR.sty | 11 +- vignettes/intro-dplR.Rnw | 8 - vignettes/timeseries-dplR.Rnw | 14 +- vignettes/xdate-dplR.Rnw | 12 +- 54 files changed, 835 insertions(+), 313 deletions(-)
Title: Comparison of Alternative Multiple Sequence Alignments
Description: Methods for comparing two alternative multiple
sequence alignments (MSAs) to determine whether they align homologous residues in
the same columns as one another. It then classifies similarities and differences
into conserved gaps, conserved sequence, merges, splits or shifts of one MSA relative
to the other. Summarising these categories for each MSA column yields information
on which sequence regions are agreed upon my both MSAs, and which differ. Several
plotting functions enable easily visualisation of the comparison data for analysis.
Author: Thomas Shafee, Ira Cooke
Maintainer: Thomas Shafee <thomas.shafee@gmail.com>
Diff between AlignStat versions 1.1 dated 2016-03-14 and 1.1.1 dated 2016-03-16
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- tests/testthat/test-align.R | 10 ---------- 3 files changed, 6 insertions(+), 16 deletions(-)
Title: Improved False Positive Control of Gene-Permuting GSEA with
Absolute Filtering
Description: Gene-set enrichment analysis (GSEA) is popularly used to assess the enrichment of differential signal in a pre-defined gene-set without using a cutoff threshold for differential expression. The significance of enrichment is evaluated through sample- or gene-permutation method. Although the sample-permutation approach is highly recommended due to its good false positive control, we must use gene-permuting method if the number of samples is small. However, such gene-permuting GSEA (or preranked GSEA) generates a lot of false positive gene-sets as the inter-gene correlation in each gene set increases. These false positives can be successfully reduced by filtering with the one-tailed absolute GSEA results. This package provides a function that performs gene-permuting GSEA calculation with or without the absolute filtering. Without filtering, users can perform (original) two-tailed or one-tailed absolute GSEA.
Author: Sora Yoon <yoonsora@unist.ac.kr>
Maintainer: Sora Yoon <yoonsora@unist.ac.kr>
Diff between AbsFilterGSEA versions 0.1 dated 2016-01-04 and 1.0 dated 2016-03-16
AbsFilterGSEA-0.1/AbsFilterGSEA/data/datalist |only AbsFilterGSEA-1.0/AbsFilterGSEA/DESCRIPTION | 11 +-- AbsFilterGSEA-1.0/AbsFilterGSEA/MD5 | 11 +-- AbsFilterGSEA-1.0/AbsFilterGSEA/NAMESPACE | 1 AbsFilterGSEA-1.0/AbsFilterGSEA/R/GenePermGSEA.R | 61 ++++++++++++------ AbsFilterGSEA-1.0/AbsFilterGSEA/man/GenePermGSEA.Rd | 16 ++-- AbsFilterGSEA-1.0/AbsFilterGSEA/src/AbsFilterGSEA.cpp | 57 ++++++++++++---- 7 files changed, 104 insertions(+), 53 deletions(-)
Title: Spatial Individual-Plant Modelling
Description: A platform for experimenting with spatially explicit individual-based vegetation models.
Author: Oscar Garcia
Maintainer: Oscar Garcia <garcia@dasometrics.net>
Diff between siplab versions 1.1 dated 2014-05-11 and 1.2 dated 2016-03-16
DESCRIPTION | 12 ++++++------ MD5 | 25 +++++++++++++------------ R/pairwise.R | 2 +- R/spurr.ker.R | 2 +- inst |only man/assimilation.Rd | 26 ++++++++++++++------------ man/boreas.Rd | 4 ++-- man/edges.Rd | 4 ++-- man/efficiency.Rd | 3 ++- man/influence.Rd | 3 ++- man/kernel.Rd | 13 +++++++++---- man/pairwise.Rd | 18 ++++++++++-------- man/select.Rd | 12 +++++++----- man/siplab-package.Rd | 36 ++++++++++++++++++++++++++---------- 14 files changed, 95 insertions(+), 65 deletions(-)
More information about ROpenWeatherMap at CRAN
Permanent link
Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function, also known as the product logarithm, without the need for installing the entire GSL.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between lamW versions 1.0.0 dated 2015-12-28 and 1.1.0 dated 2016-03-16
DESCRIPTION | 8 +-- MD5 | 14 ++--- build/partial.rdb |binary inst/News.Rd | 18 ++++++- man/lamW-package.Rd | 4 - man/lamW.Rd | 2 src/lambertW.cpp | 109 ++++++++++++++++++++++++++++++--------------- tests/testthat/test-lamW.R | 4 - 8 files changed, 105 insertions(+), 54 deletions(-)
Title: Fragment Analysis in R
Description: Performs fragment analysis using genetic data coming from capillary electrophoresis machines. These are files with FSA extension which stands for FASTA-type file and contains DNA fragment intensities read by machinery. In addition to visualization, it performs automatic scoring of SSRs (Sample Sequence Repeats; a type of genetic marker very common across the genome) and other type of PCR markers (standing for Polymerase Chain Reaction) in biparental populations such as F1, F2, BC (backcross), and diversity panels (collection of genetic diversity).
Author: Giovanny Covarrubias-Pazaran, Luis Diaz-Garcia, Brandon Schlautman, Walter Salazar, Juan Zalapa.
Maintainer: Giovanny Covarrubias-Pazaran <covarrubiasp@wisc.edu>
Diff between Fragman versions 1.0.2 dated 2015-11-12 and 1.0.3 dated 2016-03-16
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/find.ladder.R | 22 +++++++++++----------- R/ladder.info.attach.R | 10 +++++++--- man/Fragman-package.Rd | 47 +++++++++++++++++++++++++++++++++++------------ man/find.ladder.Rd | 6 +++++- man/jm.conv.Rd | 2 +- man/score.easy.Rd | 10 +++++----- 8 files changed, 75 insertions(+), 44 deletions(-)
Title: Divide and Recombine for Large, Complex Data
Description: Methods for dividing data into subsets, applying analytical
methods to the subsets, and recombining the results. Comes with a generic
MapReduce interface as well. Works with key-value pairs stored in memory,
on local disk, or on HDFS, in the latter case using the R and Hadoop
Integrated Programming Environment (RHIPE).
Author: Ryan Hafen [aut, cre],
Landon Sego [ctb]
Maintainer: Ryan Hafen <rhafen@gmail.com>
Diff between datadr versions 0.8.4 dated 2016-03-14 and 0.8.5 dated 2016-03-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 1 + tests/testthat/test-quantile.R | 22 +++++++++++----------- 4 files changed, 19 insertions(+), 18 deletions(-)