Title: Download, Manipulate, and Present American Community Survey and
Decennial Data from the US Census
Description: Provides a general toolkit for downloading, managing,
analyzing, and presenting data from the U.S. Census, including SF1
(Decennial short-form), SF3 (Decennial long-form), and the American
Community Survey (ACS). Confidence intervals provided with ACS data
are converted to standard errors to be bundled with estimates in
complex acs objects. Package provides new methods to conduct
standard operations on acs objects and present/plot data in
statistically appropriate ways. Current version is 2.0 +/- .033.
Author: Ezra Haber Glenn [aut, cre]
Maintainer: Ezra Haber Glenn <eglenn@mit.edu>
Diff between acs versions 1.2 dated 2014-01-22 and 2.0 dated 2016-03-17
acs-1.2/acs/inst |only acs-2.0/acs/DESCRIPTION | 32 acs-2.0/acs/MD5 | 67 acs-2.0/acs/NAMESPACE | 9 acs-2.0/acs/R/acs.R | 2470 ++++++++++++------------- acs-2.0/acs/README.md |only acs-2.0/acs/cleanup |only acs-2.0/acs/configure |only acs-2.0/acs/data/cpi.rda |binary acs-2.0/acs/data/fips.american.indian.area.rda |binary acs-2.0/acs/data/fips.county.rda |binary acs-2.0/acs/data/fips.county.subdivision.rda |binary acs-2.0/acs/data/fips.place.rda |binary acs-2.0/acs/data/fips.school.rda |binary acs-2.0/acs/data/fips.state.rda |binary acs-2.0/acs/data/kansas07.rda |binary acs-2.0/acs/data/kansas09.rda |binary acs-2.0/acs/data/lawrence10.rda |binary acs-2.0/acs/man/acs-class.Rd | 23 acs-2.0/acs/man/acs-package.Rd | 46 acs-2.0/acs/man/acs.fetch.Rd | 94 acs-2.0/acs/man/acs.lookup-class.Rd | 3 acs-2.0/acs/man/acs.lookup.Rd | 73 acs-2.0/acs/man/acs.tables.install.Rd |only acs-2.0/acs/man/api.key.install.Rd | 13 acs-2.0/acs/man/api.key.migrate.Rd |only acs-2.0/acs/man/cpi.Rd | 10 acs-2.0/acs/man/currency.convert.Rd | 12 acs-2.0/acs/man/currency.year.Rd | 6 acs-2.0/acs/man/divide.acs.Rd | 47 acs-2.0/acs/man/geo.lookup.Rd | 2 acs-2.0/acs/man/geo.make.Rd | 67 acs-2.0/acs/man/geography.Rd | 6 acs-2.0/acs/man/rbind.acs.Rd | 6 acs-2.0/acs/man/read.acs.Rd | 8 acs-2.0/acs/man/sum-methods.Rd | 2 36 files changed, 1567 insertions(+), 1429 deletions(-)
Title: Fetch and Analyze Data from 'WaterML' and 'WaterOneFlow' Web
Services
Description: Lets you connect to any of the Consortium of Universities for the Advancement
of Hydrologic Sciences, Inc. ('CUAHSI') Water Data Center 'WaterOneFlow' web services
and read any 'WaterML' hydrological time series data file. To see list of available
web services, see <http://hiscentral.cuahsi.org>. All versions of 'WaterML'
(1.0, 1.1 and 2.0) and both types of the web service protocol ('SOAP' and 'REST') are supported.
The package has six data download functions: GetServices(): show all public web
services from the HIS Central Catalog. HISCentral_GetSites() and HISCentral_GetSeriesCatalog():
search for sites or time series from the HIS Central catalog based on geographic bounding box,
server, or keyword. GetVariables(): Show a data.frame with all variables on the server.
GetSites(): Show a data.frame with all sites on the server. GetSiteInfo(): Show what variables,
methods and quality control levels are available at the specific site. GetValues(): Given a site
code, variable code, start time and end time, fetch a data.frame of all the observation time
series data values. The GetValues() function can also parse 'WaterML' data from a custom URL or
from a local file. The package also has five data upload functions:
AddSites(), AddVariables(), AddMethods(), AddSources(), and AddValues().
These functions can be used for uploading data to a 'HydroServer Lite' Observations
Data Model ('ODM') database via the 'JSON' data upload web service interface.
Author: Jiri Kadlec [aut, cre]
Maintainer: Jiri Kadlec <jirikadlec2@gmail.com>
Diff between WaterML versions 1.7.0 dated 2016-02-17 and 1.7.1 dated 2016-03-17
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/GetValues.R | 9 +++++++-- build/vignette.rds |binary inst/doc/WaterML-Tutorial.html | 15 +++------------ 5 files changed, 17 insertions(+), 21 deletions(-)
Title: Estimate Gene-Treatment Interaction Exploiting Randomization
Description: Estimation of gene-treatment interactions in randomized clinical trials exploiting gene-treatment independence.
Author: James Dai [aut, cre],
Xiaoyu Wang [aut]
Maintainer: James Dai <jdai@fredhutch.org>
Diff between TwoPhaseInd versions 1.1.0 dated 2016-01-29 and 1.1.1 dated 2016-03-17
DESCRIPTION | 8 MD5 | 23 +- inst/doc/TwoPhaseInd.R | 238 ++++++++++++-------------- inst/doc/TwoPhaseInd.Rnw | 421 ++++++++++++++++++++-------------------------- inst/doc/TwoPhaseInd.pdf |binary man/aco1arm.Rd | 2 man/aco2arm.Rd | 2 man/acoarm.Rd | 2 man/acodata.Rd | 16 - man/caseonly.Rd | 4 vignettes/TwoPhaseInd.Rnw | 421 ++++++++++++++++++++-------------------------- vignettes/TwoPhaseInd.bib | 70 +++++++ vignettes/figure1new.png |only 13 files changed, 591 insertions(+), 616 deletions(-)
Title: A Dependency Management System for Projects and their R Package
Dependencies
Description: Manage the R packages your project depends
on in an isolated, portable, and reproducible way.
Author: Kevin Ushey, Jonathan McPherson, Joe Cheng, Aron Atkins, JJ Allaire
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between packrat versions 0.4.6-1 dated 2015-11-05 and 0.4.7 dated 2016-03-17
packrat-0.4.6-1/packrat/R/install_github.R |only packrat-0.4.6-1/packrat/man/install_github.Rd |only packrat-0.4.6-1/packrat/tests/testthat/test-cranlike-repositories.R |only packrat-0.4.7/packrat/DESCRIPTION | 8 packrat-0.4.7/packrat/MD5 | 88 ++-- packrat-0.4.7/packrat/NAMESPACE | 1 packrat-0.4.7/packrat/R/aaa-globals.R | 2 packrat-0.4.7/packrat/R/bundle.R | 180 ---------- packrat-0.4.7/packrat/R/cache.R | 2 packrat-0.4.7/packrat/R/clean-search-path.R | 2 packrat-0.4.7/packrat/R/cranlike-repositories.R | 39 +- packrat-0.4.7/packrat/R/dependencies.R | 46 +- packrat-0.4.7/packrat/R/descfile.R | 2 packrat-0.4.7/packrat/R/disable.R | 3 packrat-0.4.7/packrat/R/downloader.R | 22 + packrat-0.4.7/packrat/R/env.R |only packrat-0.4.7/packrat/R/external.R | 4 packrat-0.4.7/packrat/R/github.R |only packrat-0.4.7/packrat/R/hide-site-libraries.R | 6 packrat-0.4.7/packrat/R/hooks.R | 2 packrat-0.4.7/packrat/R/install-local.R | 4 packrat-0.4.7/packrat/R/install.R | 2 packrat-0.4.7/packrat/R/library-support.R | 174 ++++----- packrat-0.4.7/packrat/R/lockfile.R | 35 + packrat-0.4.7/packrat/R/migrate-packrat.R | 8 packrat-0.4.7/packrat/R/options.R | 39 +- packrat-0.4.7/packrat/R/packrat-mode.R | 27 + packrat-0.4.7/packrat/R/packrat.R | 6 packrat-0.4.7/packrat/R/paths.R | 96 +---- packrat-0.4.7/packrat/R/pkg.R | 20 - packrat-0.4.7/packrat/R/pretty-print.R | 14 packrat-0.4.7/packrat/R/restore.R | 63 ++- packrat-0.4.7/packrat/R/snapshot.R | 15 packrat-0.4.7/packrat/R/status.R | 2 packrat-0.4.7/packrat/R/utils.R | 53 +- packrat-0.4.7/packrat/R/zzz.R |only packrat-0.4.7/packrat/README.md | 4 packrat-0.4.7/packrat/inst/resources/init-rprofile.R | 2 packrat-0.4.7/packrat/inst/resources/init.R | 2 packrat-0.4.7/packrat/man/bundle.Rd | 5 packrat-0.4.7/packrat/man/packrat-options.Rd | 22 - packrat-0.4.7/packrat/tests/test-cranlike-repositories.R |only packrat-0.4.7/packrat/tests/testthat/helper-bundle.R | 2 packrat-0.4.7/packrat/tests/testthat/helper-packrat.R | 31 + packrat-0.4.7/packrat/tests/testthat/projects/emptydesc |only packrat-0.4.7/packrat/tests/testthat/test-bundle.R | 73 +--- packrat-0.4.7/packrat/tests/testthat/test-github.R |only packrat-0.4.7/packrat/tests/testthat/test-packrat.R | 15 packrat-0.4.7/packrat/tests/testthat/test-rmarkdown.R | 5 49 files changed, 520 insertions(+), 606 deletions(-)
Title: Multiple Mediation Analysis
Description: Used for general multiple mediation analysis.
The analysis method is described in Yu et al. 2014, "General Multiple Mediation Analysis With an Application to Explore Racial Disparity in Breast Cancer Survival", published on Journal of Biometrics & Biostatistics, 5(2):189.
Author: Qingzhao Yu
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Diff between mma versions 2.0-3 dated 2016-02-24 and 2.0-4 dated 2016-03-17
DESCRIPTION | 8 +++--- MD5 | 26 ++++++++++----------- R/mma.r | 59 ++++++++++++++++++++++++++++++++++-------------- man/boot.med.binx.Rd | 2 - man/boot.med.contx.Rd | 2 - man/data.org.Rd | 2 - man/med.binx.Rd | 6 ++-- man/med.contx.Rd | 6 ++-- man/mma-package.Rd | 8 +++--- man/mma.Rd | 8 +++--- man/plot.mma.Rd | 2 - man/print.mma.Rd | 2 - man/summary.med_iden.Rd | 15 +++++------- man/summary.mma.Rd | 2 - 14 files changed, 87 insertions(+), 61 deletions(-)
Title: Plot the Effects of Variables in Interaction Terms
Description: Plots the conditional coefficients ("marginal effects") of
variables included in multiplicative interaction terms.
Author: Frederick Solt <frederick-solt@uiowa.edu>, Yue Hu <yue-hu-1@uiowa.edu>
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Diff between interplot versions 0.1.1.1 dated 2016-02-15 and 0.1.2.0 dated 2016-03-17
DESCRIPTION | 6 - MD5 | 39 +++--- NAMESPACE | 1 NEWS.md | 6 + R/Interplot.R | 11 + R/Interplot_default.R | 118 +++++++++++--------- R/Interplot_mi.R | 224 +++++++++++++++++++++------------------ R/Interplot_mlm.R | 198 ++++++++++++++++++---------------- R/Interplot_mlmmi.R | 201 ++++++++++++++++++---------------- R/Interplot_plot.R | 102 +++++++++++++++-- README.md | 2 inst/doc/interplot-vignette.Rmd | 2 inst/doc/interplot-vignette.html | 19 --- man/interplot.Rd | 19 ++- man/interplot.default.Rd | 19 ++- man/interplot.lmerMod.Rd | 19 ++- man/interplot.lmmi.Rd | 19 ++- man/interplot.mlmmi.Rd | 19 ++- man/interplot.plot.Rd | 19 ++- vignettes/interplot-vignette.Rmd | 50 ++++++++ vignettes/vignette.bib |only 21 files changed, 693 insertions(+), 400 deletions(-)
Title: Birnbaum-Saunders Model Based on Skew-Normal Distribution
Description: It provides the density, distribution function, quantile function, random number generator, reliability function, failure rate, likelihood function,
moments and EM algorithm for Maximum Likelihood estimators, also empirical quantile and generated envelope for a given sample, all this for the three parameter
Birnbaum-Saunders model based on Skew-Normal Distribution.
Additionally, it provides the random number generator for the mixture of Birnbaum-Saunders model based on Skew-Normal distribution.
Author: Rocio Paola Maehara <rmaeharaa@gmail.com> and Luis Benites Sanchez <lbenitesanchez@gmail.com>
Maintainer: Rocio Paola Maehara <rmaeharaa@gmail.com>
Diff between bssn versions 0.6 dated 2015-09-08 and 0.7 dated 2016-03-17
DESCRIPTION | 8 MD5 | 22 - NAMESPACE | 37 +-- R/EMbssn.R | 86 +++---- R/algEMbssn.R | 242 ++++++++++---------- R/functions.R | 572 ++++++++++++++++++++++++++----------------------- data/ozone.txt.gz |binary man/EMbssn.Rd | 249 ++++++++++----------- man/bssn.Rd | 336 ++++++++++++++-------------- man/momentsbssn.Rd | 128 +++++----- man/ozone.Rd | 60 ++--- man/reliabilitybssn.Rd | 180 +++++++-------- 12 files changed, 987 insertions(+), 933 deletions(-)
Title: Random Forests for Survival, Regression and Classification
(RF-SRC)
Description: A unified treatment of Breiman's random forests for survival, regression and classification problems based on Ishwaran and Kogalur's random survival forests (RSF) package. The package runs in both serial and parallel (OpenMP) modes. Now extended to include multivariate and unsupervised forests.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 2.0.7 dated 2016-01-15 and 2.1.0 dated 2016-03-17
DESCRIPTION | 11 MD5 | 70 +-- R/data.utilities.R | 16 R/factor.utilities.R | 8 R/find.interaction.R | 12 R/generic.impute.rfsrc.R | 8 R/generic.predict.rfsrc.R | 78 ++- R/impute.rfsrc.R | 8 R/max.subtree.R | 8 R/plot.competing.risk.R | 8 R/plot.rfsrc.R | 8 R/plot.survival.R | 8 R/plot.variable.R | 15 R/predict.rfsrc.R | 10 R/print.rfsrc.R | 8 R/rf2rfz.R | 8 R/rfsrc.R | 37 - R/rfsrc.news.R | 8 R/rfsrcSyn.R | 8 R/stat.split.R | 8 R/utilities.R | 119 +++-- R/var.select.R | 25 - R/vimp.R | 21 R/zzz.R | 8 configure.ac | 2 inst/CITATION | 4 inst/NEWS | 16 inst/doc/rsf-Rnews.pdf |binary man/find.interaction.Rd | 17 man/nutrigenomic.Rd | 3 man/predict.rfsrc.Rd | 4 man/rfsrc.Rd | 31 - man/var.select.Rd | 23 - man/vimp.Rd | 2 src/randomForestSRC.c | 1003 ++++++++++++++++++++-------------------------- src/randomForestSRC.h | 27 - 36 files changed, 836 insertions(+), 814 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Eye-Tracking Data Analysis
Description: A set of tools that address tasks along the pipeline from raw
data to analysis and visualization for eye-tracking data. Offers several
popular types of analyses, including linear and growth curve time analyses,
onset-contingent reaction time analyses, as well as several non-parametric
bootstrapping approaches.
Author: Jacob Dink [aut, cre],
Brock Ferguson [aut]
Maintainer: Jacob Dink <jacobwdink@gmail.com>
Diff between eyetrackingR versions 0.1.5 dated 2016-03-06 and 0.1.6 dated 2016-03-17
DESCRIPTION | 8 ++-- MD5 | 28 ++++++++-------- NEWS.md | 3 + R/helpers.R | 23 ------------- R/time_cluster_data.R | 40 +++++++++++++++-------- R/time_sequence_data.R | 35 +++++++++++++++++--- build/vignette.rds |binary inst/doc/divergence_vignette.html | 9 ++--- inst/doc/growth_curve_analysis_vignette.html | 4 +- inst/doc/onset_contingent_analysis_vignette.html | 4 +- inst/doc/preparing_your_data_vignette.html | 4 +- inst/doc/window_analysis_vignette.html | 4 +- man/analyze_time_bins.Rd | 10 +++++ man/make_time_cluster_data.Rd | 13 ++++++- tests/testthat/test_cluster_analysis.R | 22 ++++++++++++ 15 files changed, 132 insertions(+), 75 deletions(-)
Title: Canadian Forest Fire Danger Rating System
Description: This project provides a group of new functions to calculate the outputs of the two main components of the Canadian Forest Fire Danger Rating System (CFFDRS) at various time scales: the Fire Weather Index (FWI) System and the Fire Behaviour Prediction (FBP) System. Some functions have two versions, table and raster based.
Author: Xianli Wang, Alan Cantin, Marc-Andre Parisien, Mike Wotton, Kerry Anderson, Brett Moore, and Mike Flannigan
Maintainer: Alan Cantin <Alan.Cantin@Canada.ca>
Diff between cffdrs versions 1.7.1 dated 2016-02-22 and 1.7.3 dated 2016-03-17
DESCRIPTION | 12 - MD5 | 69 ++++--- R/BEcalc.r | 43 +++- R/BROScalc.r | 51 ++++- R/C6calc.r | 78 ++++++-- R/CFBcalc.r | 51 ++++- R/DISTtcalc.r | 37 +++- R/FBPcalc.r | 415 ++++++++++++++++++++++++++++----------------- R/FIcalc.r | 25 ++ R/FMCcalc.r | 62 +++++- R/FROScalc.r | 27 ++ R/ISIcalc.r | 46 ++++- R/LBcalc.r | 38 +++- R/LBtcalc.r | 41 +++- R/ROScalc.r | 138 +++++++++++---- R/ROStcalc.r | 35 +++ R/ROSthetacalc.r | 43 +++- R/SFCcalc.r | 92 ++++++++-- R/Slopecalc.r | 361 ++++++++++++++++++++++++++------------- R/TFCcalc.r | 50 ++++- R/buiCalc.R |only R/dcCalc.R |only R/dmcCalc.R |only R/fbp.r | 79 ++++++-- R/fbpRaster.r | 213 ++++++++++++++--------- R/ffmcCalc.R |only R/fireSeason.r | 82 +++++++-- R/fwi.r | 248 +++++++++++++++------------ R/fwiCalc.R |only R/fwiRaster.r | 454 ++++++++++++++++++++++++++++++++------------------ R/gfmc.r | 162 ++++++++++++----- R/hffmc.r | 168 ++++++++++++------ R/hffmcRaster.r | 194 +++++++++++++-------- R/sdmc.r | 121 +++++++++---- R/winter_DC.r | 41 +++- man/cffdrs-package.Rd | 4 man/fbp.Rd | 2 man/fbpRaster.Rd | 2 38 files changed, 2430 insertions(+), 1054 deletions(-)
Title: Bagging Whole-Genome Regression
Description: Designed for whole-genome regressions using Bayesian models fitted via Gibbs sampling with optional resampling techniques and polygenic term with reduced dimensionality.
Author: Alencar Xavier, William Muir, Katy Rainey.
Maintainer: Alencar Xavier <xaviera@purdue.edu>
Diff between bWGR versions 1.3 dated 2015-11-19 and 1.3.1 dated 2016-03-17
DESCRIPTION | 8 ++--- MD5 | 20 ++++++++----- R/RcppExports.R | 4 ++ R/bmen.R |only R/mkr.R | 80 +++++++++++++++++++++++++++++++++++++++++++++++++++- R/wGELA.R |only inst/CITATION | 6 +-- inst/doc |only man/bWGR.Rd | 4 +- man/bmen.Rd |only man/mkr.Rd | 1 src/GSEN.cpp |only src/RcppExports.cpp | 18 +++++++++++ 13 files changed, 124 insertions(+), 17 deletions(-)
Title: Smoothing Splines for Large Samples
Description: Fits smoothing spline regression models using scalable algorithms designed for large samples. Six marginal spline types are supported: cubic, different cubic, cubic periodic, cubic thin-plate, ordinal, and nominal. Random effects and parametric effects are also supported. Response can be Gaussian or non-Gaussian: Binomial, Poisson, Gamma, Inverse Gaussian, or Negative Binomial.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between bigsplines versions 1.0-7 dated 2015-08-09 and 1.0-8 dated 2016-03-17
ChangeLog | 27 ++++++++++++++++ DESCRIPTION | 10 +++--- MD5 | 70 ++++++++++++++++++++++-------------------- R/bigspline.R | 13 ++++++- R/bigssa.R | 6 +-- R/bigssp.R | 4 +- R/imagebar.R | 11 +++--- R/makerkm.R | 15 ++++++--- R/makessa.R | 21 +++++++++--- R/makessg.R | 9 +++++ R/makessp.R | 15 +++++++-- R/predict.bigspline.R | 17 +++++++++- R/predict.bigssa.R | 4 +- R/predict.bigssg.R | 4 +- R/predict.bigssp.R | 4 +- R/remlri.R | 48 +++++++++++++++++++++++++++-- R/remlvc.R | 75 +++++++++++++++++++++++++++++++++++++++++++--- R/ssawork.R | 5 ++- R/ssgwork.R | 5 ++- R/sspwork.R | 5 ++- man/bigspline.Rd | 19 ++++++----- man/bigsplines-package.Rd | 8 +++- man/bigssa.Rd | 26 +++++++-------- man/bigssg.Rd | 18 +++-------- man/bigssp.Rd | 20 ++++++------ man/bigtps.Rd | 6 +-- man/makessa.Rd | 13 +++---- man/makessg.Rd | 13 +------ man/makessp.Rd | 13 +++---- man/predict.bigspline.Rd | 6 +-- man/predict.bigssa.Rd | 10 +++--- man/predict.bigssg.Rd | 12 ++----- man/predict.bigssp.Rd | 12 ++++--- man/predict.bigtps.Rd | 4 +- src/linker.f |only src/linkersym.f |only src/ordker.f |only src/ordkersym.f |only 38 files changed, 369 insertions(+), 179 deletions(-)
Title: Quantitative Analysis Made Accessible
Description: Contains a number of functions that serve
two goals: first, make R more accessible to people migrating from
SPSS by adding a number of functions that behave roughly like their
SPSS equivalents; and second, make a number of slightly more
advanced functions more user friendly to relatively novice users.
Author: Gjalt-Jorn Peters
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@userfriendlyscience.com>
Diff between userfriendlyscience versions 0.4-0 dated 2016-01-21 and 0.4-1 dated 2016-03-17
userfriendlyscience-0.4-0/userfriendlyscience/man/userfriendlyscience-associationMatrix.Rd |only userfriendlyscience-0.4-0/userfriendlyscience/man/userfriendlyscience-convert.Rd |only userfriendlyscience-0.4-0/userfriendlyscience/man/userfriendlyscience-printMethods.Rd |only userfriendlyscience-0.4-0/userfriendlyscience/man/userfriendlyscience-regr.Rd |only userfriendlyscience-0.4-0/userfriendlyscience/man/userfriendlyscience-userfriendlyscienceBasics.Rd |only userfriendlyscience-0.4-0/userfriendlyscience/tests/sysRevExampleTemplate.r |only userfriendlyscience-0.4-1/userfriendlyscience/DESCRIPTION | 8 +- userfriendlyscience-0.4-1/userfriendlyscience/MD5 | 35 +++++----- userfriendlyscience-0.4-1/userfriendlyscience/NAMESPACE | 4 - userfriendlyscience-0.4-1/userfriendlyscience/R/associationMatrix.R | 17 ++++ userfriendlyscience-0.4-1/userfriendlyscience/R/asymmetricalScatterMatrix.R | 21 ++++-- userfriendlyscience-0.4-1/userfriendlyscience/R/convert.R | 8 ++ userfriendlyscience-0.4-1/userfriendlyscience/R/descr.R | 2 userfriendlyscience-0.4-1/userfriendlyscience/R/fullFact.R |only userfriendlyscience-0.4-1/userfriendlyscience/R/powerHist.R | 9 +- userfriendlyscience-0.4-1/userfriendlyscience/R/regr.R | 17 ++++ userfriendlyscience-0.4-1/userfriendlyscience/R/sort.associationMatrix.R | 18 ++++- userfriendlyscience-0.4-1/userfriendlyscience/man/associationMatrix.Rd |only userfriendlyscience-0.4-1/userfriendlyscience/man/asymmetricalScatterMatrix.Rd | 7 ++ userfriendlyscience-0.4-1/userfriendlyscience/man/convert.Rd |only userfriendlyscience-0.4-1/userfriendlyscience/man/fullFact.Rd |only userfriendlyscience-0.4-1/userfriendlyscience/man/printMethods.Rd |only userfriendlyscience-0.4-1/userfriendlyscience/man/regr.Rd |only userfriendlyscience-0.4-1/userfriendlyscience/man/userfriendlyscience-powerHist.Rd | 7 +- userfriendlyscience-0.4-1/userfriendlyscience/man/userfriendlyscienceBasics.Rd |only 25 files changed, 115 insertions(+), 38 deletions(-)
More information about userfriendlyscience at CRAN
Permanent link
Title: Improved Prediction Intervals for ARIMA Processes and Structural
Time Series
Description: Prediction intervals for ARIMA and structural time series
models using importance sampling approach with uninformative priors for model
parameters, leading to more accurate coverage probabilities in frequentist
sense. Instead of sampling the future observations and hidden states of the
state space representation of the model, only model parameters are sampled,
and the method is based solving the equations corresponding to the conditional
coverage probability of the prediction intervals. This makes method relatively
fast compared to for example MCMC methods, and standard errors of prediction
limits can also be computed straightforwardly.
Author: Jouni Helske
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Diff between tsPI versions 1.0.0 dated 2015-11-09 and 1.0.1 dated 2016-03-17
ChangeLog |only DESCRIPTION | 19 + MD5 | 35 +-- NAMESPACE | 76 +++---- R/arima_pi.R | 390 ++++++++++++++++++++-------------------- R/struct_pi.R | 328 ++++++++++++++++----------------- R/tsPI-package.R | 66 +++--- inst/CITATION | 17 + man/acv_arma.Rd | 68 +++--- man/arima_pi.Rd | 181 +++++++++--------- man/avg_coverage_arima.Rd | 110 +++++------ man/avg_coverage_struct.Rd | 122 ++++++------ man/dacv_arma.Rd | 52 ++--- man/information_arma.Rd | 62 +++--- man/priors.Rd | 74 +++---- man/struct_pi.Rd | 154 +++++++-------- man/tsPI.Rd | 68 +++--- tests/testthat/test-arima_pi.R | 124 ++++++------ tests/testthat/test-struct_pi.R | 100 +++++----- 19 files changed, 1037 insertions(+), 1009 deletions(-)
Title: Linear/Nonlinear SVM Classification Solver Based on ADMM and
IADMM Algorithms
Description:
Solve large-scale regularised linear/kernel classification by using ADMM and IADMM algorithms. This package provides linear L2-regularised primal classification (both ADMM and IADMM are available), kernel L2-regularised dual classification (IADMM) as well as L1-regularised primal classification (both ADMM and IADMM are available).
Author: Ben DAI <bendai2-c@my.cityu.edu.hk>; Junhui Wang <j.h.wang@cityu.edu.hk>
Maintainer: Ben DAI <bendai2-c@my.cityu.edu.hk>
Diff between svmadmm versions 0.1 dated 2016-03-07 and 0.2 dated 2016-03-17
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/linear_math.c | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Spatial Modeling on Stream Networks
Description: Geostatistical modeling for data on stream networks, including models based on in-stream distance. Models are created using moving average constructions. Spatial linear models, including covariates, can be fit with ML or REML. Mapping and other graphical functions are included.
Author: Jay Ver Hoef and Erin Peterson
Maintainer: Jay Ver Hoef <ver.hoef@SpatialStreamNetworks.com>
Diff between SSN versions 1.1.6 dated 2015-08-23 and 1.1.7 dated 2016-03-17
SSN-1.1.6/SSN/R/additive.function.jay.R |only SSN-1.1.6/SSN/R/glmssn2.R |only SSN-1.1.6/SSN/inst/vignRnw |only SSN-1.1.7/SSN/DESCRIPTION | 8 SSN-1.1.7/SSN/MD5 | 34 +- SSN-1.1.7/SSN/R/CrossValidationSSN.r | 12 SSN-1.1.7/SSN/R/CrossValidationStatsSSN.r | 17 - SSN-1.1.7/SSN/R/SSN-methods.R | 7 SSN-1.1.7/SSN/R/additive.function.R | 138 +++++++-- SSN-1.1.7/SSN/R/createDistMat.R | 28 - SSN-1.1.7/SSN/data/mf04.rda |binary SSN-1.1.7/SSN/data/mf04p.rda |binary SSN-1.1.7/SSN/data/modelFits.rda |binary SSN-1.1.7/SSN/inst/doc/SSN.R | 423 ++++++++++++------------------ SSN-1.1.7/SSN/inst/doc/SSN.pdf |binary SSN-1.1.7/SSN/inst/doc/STARS.pdf |binary SSN-1.1.7/SSN/man/CrossValidationSSN.Rd | 15 - SSN-1.1.7/SSN/man/SimulateOnSSN.Rd | 6 SSN-1.1.7/SSN/man/createSSN.Rd | 2 19 files changed, 335 insertions(+), 355 deletions(-)
Title: Ensemble Empirical Mode Decomposition (EEMD) and Its Complete
Variant (CEEMDAN)
Description: An R interface for C library libeemd for performing the ensemble
empirical mode decomposition (EEMD), its complete variant (CEEMDAN) or the
regular empirical mode decomposition (EMD).
Author: Jouni Helske [aut, cre] (R interface),
Perttu Luukko [aut] (Original libeemd C library)
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Diff between Rlibeemd versions 1.3.6 dated 2015-11-10 and 1.3.7 dated 2016-03-17
ChangeLog |only DESCRIPTION | 9 +-- MD5 | 27 ++++----- NAMESPACE | 24 ++++---- R/RcppExports.R | 46 +++++++-------- R/ecg.R | 32 +++++------ configure.ac | 54 +++++++++--------- man/ECG.Rd | 45 ++++++++------- man/Rlibeemd.Rd | 60 ++++++++++---------- man/ceemdan.Rd | 162 ++++++++++++++++++++++++++++---------------------------- man/eemd.Rd | 154 ++++++++++++++++++++++++++--------------------------- man/emd.Rd | 93 +++++++++++++++----------------- man/extrema.Rd | 99 +++++++++++++++++----------------- man/nIMFs.Rd | 42 +++++++------- src/Makevars.in | 2 15 files changed, 427 insertions(+), 422 deletions(-)
Title: Importance Measure and Selection for Groups of Variables with
Random Forests
Description: Variable selection tools for groups of variables and functional data based on a new grouped variable importance with random forests.
Author: Baptiste Gregorutti
Maintainer: Baptiste Gregorutti <baptiste.gregorutti@safety-line.fr>
Diff between RFgroove versions 1.0 dated 2015-05-18 and 1.1 dated 2016-03-17
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++-------- NAMESPACE | 4 ++++ R/plot.importance.R |only R/selectLevel.R | 9 ++++++--- R/varImpGroup.R | 3 ++- man/RFgroove-package.Rd | 4 ++-- man/plot.importance.Rd |only man/selectFunctional.Rd | 4 ++-- man/varImpGroup.Rd | 8 ++++---- src/RFGroupImp.c | 45 --------------------------------------------- 11 files changed, 34 insertions(+), 69 deletions(-)
Title: Phylogenetic Comparative Methods for High-Dimensional Traits
Description: Tools for studying the evolution of high-dimensional traits (morphometric, function-valued, etc.) including ancestral state reconstruction, estimating phylogenetic signal, and assessing correlated trait evolution. Visit http://www.phylocurve.org for more information.
Author: Eric W. Goolsby
Maintainer: Eric W. Goolsby <eric.goolsby.evolution@gmail.com>
Diff between phylocurve versions 1.3.0 dated 2015-06-17 and 2.0.2 dated 2016-03-17
phylocurve-1.3.0/phylocurve/man/compare.multivar.rate.mult.Rd |only phylocurve-1.3.0/phylocurve/man/compare.rate.mult.Rd |only phylocurve-1.3.0/phylocurve/man/get_aligned_function_data.Rd |only phylocurve-1.3.0/phylocurve/man/get_tip_coefficients.Rd |only phylocurve-1.3.0/phylocurve/man/pgls.mult.Rd |only phylocurve-1.3.0/phylocurve/man/print.lr.test.Rd |only phylocurve-1.3.0/phylocurve/man/print.rate.mult.Rd |only phylocurve-1.3.0/phylocurve/man/rate.mult.Rd |only phylocurve-1.3.0/phylocurve/man/sim.mult.Rd |only phylocurve-2.0.2/phylocurve/DESCRIPTION | 21 phylocurve-2.0.2/phylocurve/MD5 | 54 phylocurve-2.0.2/phylocurve/NAMESPACE | 76 phylocurve-2.0.2/phylocurve/R/RcppExports.R |only phylocurve-2.0.2/phylocurve/R/fast_geomorph_functions.R |only phylocurve-2.0.2/phylocurve/R/phylocurve.R | 3559 ++++++---- phylocurve-2.0.2/phylocurve/man/GP.fit.Rd | 4 phylocurve-2.0.2/phylocurve/man/K.mult.Rd | 40 phylocurve-2.0.2/phylocurve/man/compare.models.Rd |only phylocurve-2.0.2/phylocurve/man/evo.model.Rd |only phylocurve-2.0.2/phylocurve/man/fast.geomorph.compare.evol.rates.Rd |only phylocurve-2.0.2/phylocurve/man/fast.geomorph.compare.multi.evol.rates.Rd |only phylocurve-2.0.2/phylocurve/man/fast.geomorph.phylo.integration.Rd |only phylocurve-2.0.2/phylocurve/man/fast.geomorph.physignal.Rd |only phylocurve-2.0.2/phylocurve/man/fast.geomorph.procD.pgls.Rd |only phylocurve-2.0.2/phylocurve/man/get.aligned.function.data.Rd |only phylocurve-2.0.2/phylocurve/man/get.tip.coefficients.Rd |only phylocurve-2.0.2/phylocurve/man/multipic.Rd |only phylocurve-2.0.2/phylocurve/man/nonlinear.fit.Rd | 4 phylocurve-2.0.2/phylocurve/man/paint.edges.Rd |only phylocurve-2.0.2/phylocurve/man/phylocurve-package.Rd | 12 phylocurve-2.0.2/phylocurve/man/phylocurve.Rd | 12 phylocurve-2.0.2/phylocurve/man/phylocurve.generalized.Rd | 4 phylocurve-2.0.2/phylocurve/man/phylocurve.trim.Rd | 4 phylocurve-2.0.2/phylocurve/man/polynomial.fit.Rd | 4 phylocurve-2.0.2/phylocurve/man/prep_multipic.Rd |only phylocurve-2.0.2/phylocurve/man/print.evo.model.Rd |only phylocurve-2.0.2/phylocurve/man/sim.curves.Rd | 6 phylocurve-2.0.2/phylocurve/man/sim.traits.Rd |only phylocurve-2.0.2/phylocurve/man/ultraFastAnc.Rd |only phylocurve-2.0.2/phylocurve/src |only 40 files changed, 2342 insertions(+), 1458 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: Functions for Kalman filtering, smoothing,
forecasting and simulation of multivariate exponential family state space
models with exact diffuse initialization and sequential processing.
Author: Jouni Helske <jouni.helske@jyu.fi>
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Diff between KFAS versions 1.2.1 dated 2016-02-05 and 1.2.2 dated 2016-03-17
ChangeLog | 30 - DESCRIPTION | 8 MD5 | 66 +- R/SSMcustom.R | 2 R/fitSSM.R | 11 R/importanceSSM.R | 4 R/interval.R | 14 R/logLik.SSModel.R | 10 R/predict.SSModel.R | 5 R/simulateSSM.R | 24 build/vignette.rds |binary data/GlobalTemp.rda |binary data/alcohol.rda |binary data/boat.rda |binary data/sexratio.rda |binary inst/doc/KFAS.R | 110 +-- inst/doc/KFAS.Rnw | 1018 +++++++++++++++++----------------- inst/doc/KFAS.pdf |binary man/KFAS.Rd | 1078 ++++++++++++++++++------------------- man/KFS.Rd | 442 +++++++-------- man/fitSSM.Rd | 4 man/ldl.Rd | 64 +- man/logLik.SSModel.Rd | 10 man/predict.SSModel.Rd | 5 man/simulateSSM.Rd | 190 +++--- src/declarations.h | 2 src/init.c | 2 src/simgaussianuncond.f95 | 13 tests/testthat/testBasics.R | 11 tests/testthat/testImportanceSSM.R | 14 tests/testthat/testNumerical.R | 7 tests/testthat/testPredict.R | 67 +- tests/testthat/testSimulateSSM.R | 12 vignettes/KFAS.Rnw | 1018 +++++++++++++++++----------------- 34 files changed, 2136 insertions(+), 2105 deletions(-)
Title: Lasso and Elastic-Net Regularized Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression and the Cox model. Two recent additions are the multiple-response Gaussian, and the grouped multinomial. The algorithm uses cyclical coordinate descent in a path-wise fashion, as described in the paper linked to via the URL below.
Author: Jerome Friedman, Trevor Hastie, Noah Simon, Rob Tibshirani
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between glmnet versions 2.0-4 dated 2016-03-13 and 2.0-5 dated 2016-03-17
DESCRIPTION | 8 +-- MD5 | 10 +-- R/predict.glmnet.R | 2 R/predict.multnet.R | 4 - inst/doc/Coxnet.pdf |binary inst/doc/glmnet_beta.html | 116 +++++++++++++++++++++++----------------------- 6 files changed, 70 insertions(+), 70 deletions(-)
Title: Abbreviating Items Measures using Genetic Algorithms
Description: The GAabbreviate package uses Genetic Algorithms as an optimization tool for scale abbreviation or subset selection that maximally captures the variance in the original data.
Author: Luca Scrucca [aut],
Baljinder K. Sahdra [aut, cre]
Maintainer: Baljinder K. Sahdra <baljinder.sahdra@acu.edu.au>
Diff between GAabbreviate versions 1.1 dated 2016-02-26 and 1.2 dated 2016-03-17
GAabbreviate-1.1/GAabbreviate/R/zzz.R |only GAabbreviate-1.2/GAabbreviate/DESCRIPTION | 8 GAabbreviate-1.2/GAabbreviate/MD5 | 11 GAabbreviate-1.2/GAabbreviate/R/GAabbreviate.R | 335 ++++++------- GAabbreviate-1.2/GAabbreviate/inst/NEWS | 6 GAabbreviate-1.2/GAabbreviate/man/GAabbreviate-internal.Rd | 1 GAabbreviate-1.2/GAabbreviate/man/GAabbreviate.Rd | 16 7 files changed, 202 insertions(+), 175 deletions(-)
Title: Analysis and Visualization of Droplet Digital PCR in R and on
the Web
Description: An interface to explore, analyze, and visualize droplet digital PCR
(ddPCR) data in R. This is the first non-proprietary software for analyzing
two-channel ddPCR data. An interactive tool was also created and is available
online to facilitate this analysis for anyone who is not comfortable with
using R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ddpcr versions 1.0.1 dated 2016-02-19 and 1.1.2 dated 2016-03-17
ddpcr-1.0.1/ddpcr/inst/sample_data/small/B06_filled.csv |only ddpcr-1.0.1/ddpcr/inst/sample_data/small/small_B01_Amplitude.csv |only ddpcr-1.0.1/ddpcr/inst/sample_data/small/small_B06_Amplitude.csv |only ddpcr-1.0.1/ddpcr/inst/sample_data/small/small_C06_Amplitude.csv |only ddpcr-1.0.1/ddpcr/inst/sample_data/small/small_C08_Amplitude.csv |only ddpcr-1.1.2/ddpcr/DESCRIPTION | 10 ddpcr-1.1.2/ddpcr/MD5 | 114 ddpcr-1.1.2/ddpcr/R/plate.R | 4 ddpcr-1.1.2/ddpcr/R/plot.R | 2 ddpcr-1.1.2/ddpcr/R/pnpp_experiment-calculate_neg_freq.R | 2 ddpcr-1.1.2/ddpcr/R/pnpp_experiment-filled.R | 8 ddpcr-1.1.2/ddpcr/R/pnpp_experiment-plot.R | 2 ddpcr-1.1.2/ddpcr/R/sample_data.R |only ddpcr-1.1.2/ddpcr/R/subset.R | 28 ddpcr-1.1.2/ddpcr/R/type-wildtype_mutant_pnpp.R | 2 ddpcr-1.1.2/ddpcr/R/utils.R | 60 ddpcr-1.1.2/ddpcr/README.md | 205 ddpcr-1.1.2/ddpcr/build/vignette.rds |binary ddpcr-1.1.2/ddpcr/inst/doc/algorithm.Rmd | 8 ddpcr-1.1.2/ddpcr/inst/doc/algorithm.html | 21 ddpcr-1.1.2/ddpcr/inst/doc/extend.html | 41 ddpcr-1.1.2/ddpcr/inst/doc/overview.R | 16 ddpcr-1.1.2/ddpcr/inst/doc/overview.Rmd | 32 ddpcr-1.1.2/ddpcr/inst/doc/overview.html | 199 ddpcr-1.1.2/ddpcr/inst/sample_data/empty_plate.rds |binary ddpcr-1.1.2/ddpcr/inst/sample_data/large/large.rds |binary ddpcr-1.1.2/ddpcr/inst/sample_data/small/A05_filled.csv |only ddpcr-1.1.2/ddpcr/inst/sample_data/small/analyzed.rds |binary ddpcr-1.1.2/ddpcr/inst/sample_data/small/analyzed_pnpp.rds |binary ddpcr-1.1.2/ddpcr/inst/sample_data/small/small.csv | 15 ddpcr-1.1.2/ddpcr/inst/sample_data/small/small.rds |binary ddpcr-1.1.2/ddpcr/inst/sample_data/small/small_A01_Amplitude.csv |only ddpcr-1.1.2/ddpcr/inst/sample_data/small/small_A05_Amplitude.csv |only ddpcr-1.1.2/ddpcr/inst/sample_data/small/small_C01_Amplitude.csv |29535 ++++------ ddpcr-1.1.2/ddpcr/inst/sample_data/small/small_C05_Amplitude.csv |only ddpcr-1.1.2/ddpcr/inst/sample_data/small/small_F05_Amplitude.csv |only ddpcr-1.1.2/ddpcr/inst/shiny/data |only ddpcr-1.1.2/ddpcr/inst/shiny/server/tab-dataset.R | 2 ddpcr-1.1.2/ddpcr/inst/shiny/server/tab-results.R | 3 ddpcr-1.1.2/ddpcr/inst/shiny/server/tab-settings.R | 4 ddpcr-1.1.2/ddpcr/inst/shiny/ui/tab-settings.R | 9 ddpcr-1.1.2/ddpcr/man/calculate_neg_freq_single.Rd | 2 ddpcr-1.1.2/ddpcr/man/get_filled_border.Rd | 4 ddpcr-1.1.2/ddpcr/man/get_filled_drops.Rd | 4 ddpcr-1.1.2/ddpcr/man/is_range.Rd | 8 ddpcr-1.1.2/ddpcr/man/plot.ddpcr_plate.Rd | 2 ddpcr-1.1.2/ddpcr/man/plot.pnpp_experiment.Rd | 2 ddpcr-1.1.2/ddpcr/man/plot.wildtype_mutant_pnpp.Rd | 2 ddpcr-1.1.2/ddpcr/man/sample_data.Rd | 5 ddpcr-1.1.2/ddpcr/man/subset.ddpcr_plate.Rd | 20 ddpcr-1.1.2/ddpcr/man/well_info.Rd | 2 ddpcr-1.1.2/ddpcr/man/wells_used.Rd | 2 ddpcr-1.1.2/ddpcr/tests/testthat/test-custom_thresholds.R | 10 ddpcr-1.1.2/ddpcr/tests/testthat/test-empty.R | 16 ddpcr-1.1.2/ddpcr/tests/testthat/test-failures.R | 8 ddpcr-1.1.2/ddpcr/tests/testthat/test-outliers.R | 6 ddpcr-1.1.2/ddpcr/tests/testthat/test-plate.R | 10 ddpcr-1.1.2/ddpcr/tests/testthat/test-pnpp_experiment-calculate_neg_freq.R | 10 ddpcr-1.1.2/ddpcr/tests/testthat/test-pnpp_experiment-filled.R | 18 ddpcr-1.1.2/ddpcr/tests/testthat/test-pnpp_experiment.R | 4 ddpcr-1.1.2/ddpcr/tests/testthat/test-subset.R | 56 ddpcr-1.1.2/ddpcr/tests/testthat/test-utils.R | 20 ddpcr-1.1.2/ddpcr/vignettes/algorithm.Rmd | 8 ddpcr-1.1.2/ddpcr/vignettes/overview.Rmd | 32 64 files changed, 14751 insertions(+), 15822 deletions(-)
Title: Improved Access for Blind Users
Description: Blind users do not have access to the graphical output from R
without printing the content of graphics windows to an embosser of some kind. This
is not as immediate as is required for efficient access to statistical output.
The functions here are created so that blind people can make even better use
of R. This includes the text descriptions of graphs, convenience functions
to replace the functionality offered in many GUI front ends, and experimental
functionality for optimising graphical content to prepare it for embossing as
tactile images.
Author: A. Jonathan R. Godfrey [aut, cre], Duncan Murdoch [ctb], Greg Snow
[ctb], Henrik Bengtsson [ctb], James Curtis [ctb], Paul Murrell [ctb], Timothy Bilton [ctb], Yihui Xie
[ctb]
Maintainer: A. Jonathan R. Godfrey <a.j.godfrey@massey.ac.nz>
Diff between BrailleR versions 0.22.0 dated 2015-06-26 and 0.24.0 dated 2016-03-17
BrailleR-0.22.0/BrailleR/R/Premiere100.R |only BrailleR-0.22.0/BrailleR/inst/DEFAULTS |only BrailleR-0.24.0/BrailleR/DESCRIPTION | 31 + BrailleR-0.24.0/BrailleR/MD5 | 116 +++-- BrailleR-0.24.0/BrailleR/NAMESPACE | 15 BrailleR-0.24.0/BrailleR/R/BRLThis.R | 26 - BrailleR-0.24.0/BrailleR/R/BrailleRHome.R |only BrailleR-0.24.0/BrailleR/R/GettingStarted.R | 18 BrailleR-0.24.0/BrailleR/R/Internal.R | 18 BrailleR-0.24.0/BrailleR/R/JoinBlindRUG.R |only BrailleR-0.24.0/BrailleR/R/MakeAllFormats.R |only BrailleR-0.24.0/BrailleR/R/MakeBatch.R | 26 - BrailleR-0.24.0/BrailleR/R/MakeReadable.R |only BrailleR-0.24.0/BrailleR/R/MakeRmdFiles.R | 14 BrailleR-0.24.0/BrailleR/R/MakeRprofile.R | 5 BrailleR-0.24.0/BrailleR/R/MakeSlideShow.R |only BrailleR-0.24.0/BrailleR/R/NewFunction.R |only BrailleR-0.24.0/BrailleR/R/OneFactor.R | 49 +- BrailleR-0.24.0/BrailleR/R/OnePredictor.R | 43 +- BrailleR-0.24.0/BrailleR/R/Options.R | 214 +++++++--- BrailleR-0.24.0/BrailleR/R/Premier100.R |only BrailleR-0.24.0/BrailleR/R/PrepareWriteR.R | 8 BrailleR-0.24.0/BrailleR/R/R2txtJG.R | 2 BrailleR-0.24.0/BrailleR/R/SVGThis.R | 4 BrailleR-0.24.0/BrailleR/R/SetupBrailleR.R |only BrailleR-0.24.0/BrailleR/R/TwoFactors.R | 67 +-- BrailleR-0.24.0/BrailleR/R/UniDesc.R | 69 +-- BrailleR-0.24.0/BrailleR/R/VIMethod1_JG.R | 4 BrailleR-0.24.0/BrailleR/R/VIMethod2_TB.R | 4 BrailleR-0.24.0/BrailleR/R/WTF.R |only BrailleR-0.24.0/BrailleR/R/WhereXY.R | 7 BrailleR-0.24.0/BrailleR/R/WriteR.R |only BrailleR-0.24.0/BrailleR/R/history.R |only BrailleR-0.24.0/BrailleR/R/zzz.R | 29 + BrailleR-0.24.0/BrailleR/inst/BrailleROptions |only BrailleR-0.24.0/BrailleR/inst/NEWS | 111 ++++- BrailleR-0.24.0/BrailleR/inst/Python/FixLineBreaks.py |only BrailleR-0.24.0/BrailleR/inst/Python/RemoveTabs.py |only BrailleR-0.24.0/BrailleR/inst/Python/WriteR/HelpPage.Rmd | 51 +- BrailleR-0.24.0/BrailleR/inst/Python/WriteR/HelpPage.html | 59 +- BrailleR-0.24.0/BrailleR/inst/Python/WriteR/WriteR.pyw | 172 +++++--- BrailleR-0.24.0/BrailleR/inst/WriteROptions |only BrailleR-0.24.0/BrailleR/inst/css/JGSlides.css |only BrailleR-0.24.0/BrailleR/inst/doc/BrailleRHistory.html | 166 +++++-- BrailleR-0.24.0/BrailleR/inst/doc/BrailleRHistory.rmd | 11 BrailleR-0.24.0/BrailleR/inst/doc/Ex1histograms.html | 150 +++---- BrailleR-0.24.0/BrailleR/inst/doc/Ex2BasicNumerical.html | 48 +- BrailleR-0.24.0/BrailleR/inst/doc/Ex3UnivariateDescription.html | 46 +- BrailleR-0.24.0/BrailleR/inst/doc/Ex4SingleResponseOneGroupingFactor.html | 46 +- BrailleR-0.24.0/BrailleR/inst/doc/GettingStarted.R | 3 BrailleR-0.24.0/BrailleR/inst/doc/GettingStarted.Rmd | 13 BrailleR-0.24.0/BrailleR/inst/doc/GettingStarted.html | 66 ++- BrailleR-0.24.0/BrailleR/inst/foo.pandoc |only BrailleR-0.24.0/BrailleR/man/BrailleR-package.Rd | 6 BrailleR-0.24.0/BrailleR/man/BrailleRHome.Rd |only BrailleR-0.24.0/BrailleR/man/Embossers.Rd | 15 BrailleR-0.24.0/BrailleR/man/Internal.Rd | 8 BrailleR-0.24.0/BrailleR/man/JoinBlindRUG.Rd |only BrailleR-0.24.0/BrailleR/man/MakeAllFormats.Rd |only BrailleR-0.24.0/BrailleR/man/MakeReadable.Rd |only BrailleR-0.24.0/BrailleR/man/MakeSlideShow.Rd |only BrailleR-0.24.0/BrailleR/man/NewFunction.Rd |only BrailleR-0.24.0/BrailleR/man/PrepareWriteR.Rd | 14 BrailleR-0.24.0/BrailleR/man/SVGThis.Rd | 11 BrailleR-0.24.0/BrailleR/man/SetOptions.Rd | 44 +- BrailleR-0.24.0/BrailleR/man/SetupBrailleR.Rd |only BrailleR-0.24.0/BrailleR/man/TwoFactors.Rd | 8 BrailleR-0.24.0/BrailleR/man/VI.Rd | 5 BrailleR-0.24.0/BrailleR/man/WTF.Rd |only BrailleR-0.24.0/BrailleR/man/history.Rd |only BrailleR-0.24.0/BrailleR/vignettes/BrailleRHistory.rmd | 11 BrailleR-0.24.0/BrailleR/vignettes/BrailleRPublications.bib | 2 BrailleR-0.24.0/BrailleR/vignettes/GettingStarted.Rmd | 13 73 files changed, 1207 insertions(+), 641 deletions(-)
Title: Functions for Elementary Bayesian Inference
Description: A set of R functions and data sets for the book Introduction to
Bayesian Statistics, Bolstad, W.M. (2007), John Wiley & Sons ISBN 0-471-27020-2.
Author: James Curran <j.curran@auckland.ac.nz>
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between Bolstad versions 0.2-25 dated 2013-06-17 and 0.2-30 dated 2016-03-17
Bolstad-0.2-25/Bolstad/INDEX |only Bolstad-0.2-30/Bolstad/DESCRIPTION | 20 Bolstad-0.2-30/Bolstad/MD5 | 125 ++- Bolstad-0.2-30/Bolstad/NAMESPACE | 111 ++- Bolstad-0.2-30/Bolstad/R/Bolstad-package.R |only Bolstad-0.2-30/Bolstad/R/IQR.R |only Bolstad-0.2-30/Bolstad/R/as.data.frame.Bolstad.R |only Bolstad-0.2-30/Bolstad/R/bayes.lin.reg.r | 631 +++++++++++--------- Bolstad-0.2-30/Bolstad/R/bayes.lm.R |only Bolstad-0.2-30/Bolstad/R/bayes.t.test.R |only Bolstad-0.2-30/Bolstad/R/binobp.r | 93 ++ Bolstad-0.2-30/Bolstad/R/binodp.r | 93 ++ Bolstad-0.2-30/Bolstad/R/binogcp.r | 149 +++- Bolstad-0.2-30/Bolstad/R/binomixp.r | 314 ++++++--- Bolstad-0.2-30/Bolstad/R/cdf.R |only Bolstad-0.2-30/Bolstad/R/createPrior.R |only Bolstad-0.2-30/Bolstad/R/createPrior.default.R |only Bolstad-0.2-30/Bolstad/R/cumDistFun.R |only Bolstad-0.2-30/Bolstad/R/decomp.R |only Bolstad-0.2-30/Bolstad/R/lines.Bolstad.R |only Bolstad-0.2-30/Bolstad/R/mean.Bolstad.R |only Bolstad-0.2-30/Bolstad/R/median.Bolstad.R |only Bolstad-0.2-30/Bolstad/R/mvnmvnp.R |only Bolstad-0.2-30/Bolstad/R/normdp.r | 64 +- Bolstad-0.2-30/Bolstad/R/normgcp.r | 123 +++ Bolstad-0.2-30/Bolstad/R/normmixp.r | 390 +++++++----- Bolstad-0.2-30/Bolstad/R/normnp.r | 212 ++++-- Bolstad-0.2-30/Bolstad/R/nvaricp.r | 67 ++ Bolstad-0.2-30/Bolstad/R/plot.Bolstad.r | 83 ++ Bolstad-0.2-30/Bolstad/R/poisdp.r | 72 ++ Bolstad-0.2-30/Bolstad/R/poisgamp.r | 107 ++- Bolstad-0.2-30/Bolstad/R/poisgcp.r | 88 ++ Bolstad-0.2-30/Bolstad/R/print.Bolstad.R |only Bolstad-0.2-30/Bolstad/R/print.sintegral.R |only Bolstad-0.2-30/Bolstad/R/print.sscamp.R |only Bolstad-0.2-30/Bolstad/R/print.summary.Bolstad.R |only Bolstad-0.2-30/Bolstad/R/qFun.R |only Bolstad-0.2-30/Bolstad/R/quantile.Bolstad.R |only Bolstad-0.2-30/Bolstad/R/sd.R |only Bolstad-0.2-30/Bolstad/R/sintegral.r | 119 ++- Bolstad-0.2-30/Bolstad/R/sscsample.r | 339 +++++----- Bolstad-0.2-30/Bolstad/R/summary.Bolstad.R |only Bolstad-0.2-30/Bolstad/R/sysdata.rda |binary Bolstad-0.2-30/Bolstad/R/var.R |only Bolstad-0.2-30/Bolstad/R/xdesign.r | 58 + Bolstad-0.2-30/Bolstad/README.md |only Bolstad-0.2-30/Bolstad/data |only Bolstad-0.2-30/Bolstad/man/Bolstad-package.Rd |only Bolstad-0.2-30/Bolstad/man/IQR.Rd |only Bolstad-0.2-30/Bolstad/man/as.data.frame.Bolstad.Rd |only Bolstad-0.2-30/Bolstad/man/bayes.lin.reg.Rd | 196 +++--- Bolstad-0.2-30/Bolstad/man/bayes.lm.Rd |only Bolstad-0.2-30/Bolstad/man/bayes.t.test.Rd |only Bolstad-0.2-30/Bolstad/man/bears.Rd |only Bolstad-0.2-30/Bolstad/man/binobp.Rd | 130 +--- Bolstad-0.2-30/Bolstad/man/binodp.Rd | 145 ++-- Bolstad-0.2-30/Bolstad/man/binogcp.Rd | 184 +++-- Bolstad-0.2-30/Bolstad/man/binomixp.Rd | 157 ++-- Bolstad-0.2-30/Bolstad/man/cdf.Rd |only Bolstad-0.2-30/Bolstad/man/createPrior.Rd |only Bolstad-0.2-30/Bolstad/man/createPrior.default.Rd |only Bolstad-0.2-30/Bolstad/man/decomp.Rd |only Bolstad-0.2-30/Bolstad/man/lines.Bolstad.Rd |only Bolstad-0.2-30/Bolstad/man/mean.Bolstad.Rd |only Bolstad-0.2-30/Bolstad/man/median.Bolstad.Rd |only Bolstad-0.2-30/Bolstad/man/mvnmvnp.Rd |only Bolstad-0.2-30/Bolstad/man/normdp.Rd | 123 ++- Bolstad-0.2-30/Bolstad/man/normgcp.Rd | 209 +++--- Bolstad-0.2-30/Bolstad/man/normmixp.Rd | 123 ++- Bolstad-0.2-30/Bolstad/man/normnp.Rd | 120 ++- Bolstad-0.2-30/Bolstad/man/nvaricp.Rd | 146 ++-- Bolstad-0.2-30/Bolstad/man/plot.Bolstad.Rd | 98 ++- Bolstad-0.2-30/Bolstad/man/poisdp.Rd | 135 ++-- Bolstad-0.2-30/Bolstad/man/poisgamp.Rd | 141 ++-- Bolstad-0.2-30/Bolstad/man/poisgcp.Rd | 206 +++--- Bolstad-0.2-30/Bolstad/man/print.Bolstad.Rd |only Bolstad-0.2-30/Bolstad/man/print.sscsamp.Rd |only Bolstad-0.2-30/Bolstad/man/quantile.Bolstad.Rd |only Bolstad-0.2-30/Bolstad/man/sd.Bolstad.Rd |only Bolstad-0.2-30/Bolstad/man/sd.Rd |only Bolstad-0.2-30/Bolstad/man/sintegral.Rd | 127 ++-- Bolstad-0.2-30/Bolstad/man/slug.Rd |only Bolstad-0.2-30/Bolstad/man/sscsample.Rd | 100 +-- Bolstad-0.2-30/Bolstad/man/sscsample.data.Rd |only Bolstad-0.2-30/Bolstad/man/summary.Bolstad.Rd |only Bolstad-0.2-30/Bolstad/man/var.Rd |only Bolstad-0.2-30/Bolstad/man/xdesign.Rd | 92 +- 87 files changed, 3613 insertions(+), 2077 deletions(-)
Title: Remove Weekends and Holidays from ggplot2 Axes
Description: Provides a continuous date scale, omitting weekends and holidays.
Author: Dave Mills [aut, cre]
Maintainer: Dave Mills <dave.a.mills@gmail.com>
Diff between bdscale versions 1.2 dated 2014-11-12 and 2.0.0 dated 2016-03-17
DESCRIPTION | 25 +++++---- MD5 | 34 +++++++------ NAMESPACE | 10 ++- R/data.R |only R/scale_bd.R | 43 +++++++++-------- R/yahoo_dates.R | 3 - README.md | 31 ++++++------ build/vignette.rds |binary data |only inst/doc/bdscale.R | 14 ++--- inst/doc/bdscale.Rmd | 4 - inst/doc/bdscale.html | 126 +++++++++++++++++++++++++++++--------------------- man/bd2t.Rd | 6 +- man/bd_breaks.Rd | 5 + man/nyse.Rd |only man/scale_x_bd.Rd | 11 ++-- man/yahoo.Rd | 3 - tests |only vignettes/bdscale.Rmd | 4 - 19 files changed, 183 insertions(+), 136 deletions(-)
Title: Advanced Analysis of B Cell Receptor Repertoire Data
Description: Methods for advanced analysis of B cell receptor repertoire
data, like gene usage, mutations, clones, diversity, distance measures and
multidimensional scaling and their visualisation.
Author: Julia Bischof
Maintainer: Julia Bischof <Julia.Bischof@uksh.de>
Diff between bcRep versions 1.3.1 dated 2016-02-25 and 1.3.2 dated 2016-03-17
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/compare.geneUsage.R | 4 ++-- R/sequences.geneComb.R | 12 ++++++------ inst/NEWS.Rmd | 8 ++++++++ inst/doc/NEWS.pdf |binary 6 files changed, 25 insertions(+), 17 deletions(-)