Title: Binary Classifier and Regression Model Interpretation Functions
Description: Compute permutation- based performance measures and create partial
dependence plots for (cross-validated) 'randomForest' and 'ada' models.
Author: Michel Ballings and Dirk Van den Poel
Maintainer: Michel Ballings <michel.ballings@GMail.com>
Diff between interpretR versions 0.2.3 dated 2015-06-23 and 0.2.4 dated 2016-03-19
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 7 ++++++- R/parDepPlot.R | 27 +++++++++++++++++++-------- inst/NEWS | 4 ++++ man/parDepPlot.Rd | 4 +++- 6 files changed, 42 insertions(+), 20 deletions(-)
Title: An API Client for the Internet Archive
Description: Search the Internet Archive, retrieve metadata, and download
files.
Author: Lincoln Mullen [aut, cre]
Maintainer: Lincoln Mullen <lincoln@lincolnmullen.com>
Diff between internetarchive versions 0.1.4 dated 2015-09-28 and 0.1.5 dated 2016-03-19
internetarchive-0.1.4/internetarchive/NEWS |only internetarchive-0.1.5/internetarchive/DESCRIPTION | 11 - internetarchive-0.1.5/internetarchive/MD5 | 48 ++-- internetarchive-0.1.5/internetarchive/NAMESPACE | 3 internetarchive-0.1.5/internetarchive/NEWS.md |only internetarchive-0.1.5/internetarchive/R/ia_download.R | 6 internetarchive-0.1.5/internetarchive/R/ia_get_item.R | 5 internetarchive-0.1.5/internetarchive/R/ia_keyword_search.R | 4 internetarchive-0.1.5/internetarchive/R/ia_search.R | 4 internetarchive-0.1.5/internetarchive/R/internetarchive-package.R | 3 internetarchive-0.1.5/internetarchive/build/vignette.rds |binary internetarchive-0.1.5/internetarchive/inst/doc/internet-archive.R | 20 - internetarchive-0.1.5/internetarchive/inst/doc/internet-archive.Rmd | 17 - internetarchive-0.1.5/internetarchive/inst/doc/internet-archive.html | 103 +++++----- internetarchive-0.1.5/internetarchive/man/ia_browse.Rd | 2 internetarchive-0.1.5/internetarchive/man/ia_download.Rd | 6 internetarchive-0.1.5/internetarchive/man/ia_files.Rd | 2 internetarchive-0.1.5/internetarchive/man/ia_get_items.Rd | 2 internetarchive-0.1.5/internetarchive/man/ia_item_id.Rd | 2 internetarchive-0.1.5/internetarchive/man/ia_keyword_search.Rd | 2 internetarchive-0.1.5/internetarchive/man/ia_list_fields.Rd | 2 internetarchive-0.1.5/internetarchive/man/ia_metadata.Rd | 2 internetarchive-0.1.5/internetarchive/man/ia_search.Rd | 2 internetarchive-0.1.5/internetarchive/man/internetarchive.Rd | 2 internetarchive-0.1.5/internetarchive/tests/testthat/hecker_meta.rds |binary internetarchive-0.1.5/internetarchive/vignettes/internet-archive.Rmd | 15 - 26 files changed, 121 insertions(+), 142 deletions(-)
More information about internetarchive at CRAN
Permanent link
Title: Morphological Analysis and Spell Checker for R
Description: A spell checker and morphological analyzer library designed for
languages with rich morphology and complex word compounding or character
encoding. The package can check and analyze individual words as well as
search for incorrect words within a text, latex or manual document.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between hunspell versions 1.1 dated 2016-03-12 and 1.2 dated 2016-03-19
hunspell-1.1/hunspell/inst/dict/en_US |only hunspell-1.2/hunspell/DESCRIPTION | 9 - hunspell-1.2/hunspell/MD5 | 35 +++-- hunspell-1.2/hunspell/NAMESPACE | 5 hunspell-1.2/hunspell/NEWS | 6 hunspell-1.2/hunspell/R/RcppExports.R | 16 +- hunspell-1.2/hunspell/R/hunspell.R | 190 +++++++++++++++++++++-------- hunspell-1.2/hunspell/inst/dict/README.txt |only hunspell-1.2/hunspell/inst/dict/en_US.aff |only hunspell-1.2/hunspell/inst/dict/en_US.dic |only hunspell-1.2/hunspell/man/hunspell.Rd | 115 ++++++++++++----- hunspell-1.2/hunspell/src/Makevars.in | 4 hunspell-1.2/hunspell/src/Makevars.win | 4 hunspell-1.2/hunspell/src/RcppExports.cpp | 67 +++++++--- hunspell-1.2/hunspell/src/check.cpp | 100 ++++----------- hunspell-1.2/hunspell/src/find.cpp | 140 ++++++++++++++------- hunspell-1.2/hunspell/src/utils.h |only hunspell-1.2/hunspell/tests |only 18 files changed, 450 insertions(+), 241 deletions(-)
Title: Generate Functions to Get or Set Global Options
Description: It provides more controls on the option values such as validation
and filtering on the values, making options invisible or private.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between GlobalOptions versions 0.0.8 dated 2015-08-18 and 0.0.9 dated 2016-03-19
GlobalOptions-0.0.8/GlobalOptions/inst/doc/GlobalOptions.Rnw |only GlobalOptions-0.0.8/GlobalOptions/inst/doc/GlobalOptions.pdf |only GlobalOptions-0.0.8/GlobalOptions/vignettes/GlobalOptions.Rnw |only GlobalOptions-0.0.9/GlobalOptions/DESCRIPTION | 10 GlobalOptions-0.0.9/GlobalOptions/MD5 | 27 - GlobalOptions-0.0.9/GlobalOptions/NEWS | 5 GlobalOptions-0.0.9/GlobalOptions/R/class.R | 46 +- GlobalOptions-0.0.9/GlobalOptions/R/setGlobalOptions.R | 129 +++++- GlobalOptions-0.0.9/GlobalOptions/build/vignette.rds |binary GlobalOptions-0.0.9/GlobalOptions/inst/doc/GlobalOptions.R | 211 +++++++--- GlobalOptions-0.0.9/GlobalOptions/inst/doc/GlobalOptions.Rmd |only GlobalOptions-0.0.9/GlobalOptions/inst/doc/GlobalOptions.html |only GlobalOptions-0.0.9/GlobalOptions/inst/tests/test.R | 94 ++++ GlobalOptions-0.0.9/GlobalOptions/man/Assign.GlobalOptionsFun.rd | 13 GlobalOptions-0.0.9/GlobalOptions/man/Subset.GlobalOptionsFun.rd | 11 GlobalOptions-0.0.9/GlobalOptions/man/setGlobalOptions.rd | 17 GlobalOptions-0.0.9/GlobalOptions/vignettes/GlobalOptions.Rmd |only GlobalOptions-0.0.9/GlobalOptions/vignettes/custom.css |only 18 files changed, 461 insertions(+), 102 deletions(-)
Title: End-Member Modelling of Grain-Size Data
Description: End-member modelling analysis of grain-size data.
Author: Michael Dietze, Elisabeth Dietze
Maintainer: Michael Dietze <mdietze@gfz-potsdam.de>
Diff between EMMAgeo versions 0.9.1 dated 2013-10-14 and 0.9.4 dated 2016-03-19
EMMAgeo-0.9.1/EMMAgeo/R/test.L.R |only EMMAgeo-0.9.1/EMMAgeo/R/test.lw.R |only EMMAgeo-0.9.1/EMMAgeo/data/X.artificial.rda |only EMMAgeo-0.9.1/EMMAgeo/man/X.artificial.Rd |only EMMAgeo-0.9.1/EMMAgeo/man/test.L.Rd |only EMMAgeo-0.9.1/EMMAgeo/man/test.lw.Rd |only EMMAgeo-0.9.4/EMMAgeo/DESCRIPTION | 24 - EMMAgeo-0.9.4/EMMAgeo/MD5 | 91 ++-- EMMAgeo-0.9.4/EMMAgeo/NAMESPACE | 62 ++ EMMAgeo-0.9.4/EMMAgeo/NEWS | 32 + EMMAgeo-0.9.4/EMMAgeo/R/EMMA.R | 512 ++++++++++++++--------- EMMAgeo-0.9.4/EMMAgeo/R/EMMAgeo-internal.R | 250 +++++------ EMMAgeo-0.9.4/EMMAgeo/R/EMMAgeo-package.R |only EMMAgeo-0.9.4/EMMAgeo/R/GUI.R |only EMMAgeo-0.9.4/EMMAgeo/R/Mqs.uncertainty.R | 292 ++++++------- EMMAgeo-0.9.4/EMMAgeo/R/check.data.R | 136 +++--- EMMAgeo-0.9.4/EMMAgeo/R/convert.units.R | 67 +-- EMMAgeo-0.9.4/EMMAgeo/R/create.EM.R | 107 ++-- EMMAgeo-0.9.4/EMMAgeo/R/define.limits.R | 73 +-- EMMAgeo-0.9.4/EMMAgeo/R/get.l.R |only EMMAgeo-0.9.4/EMMAgeo/R/get.l.opt.R |only EMMAgeo-0.9.4/EMMAgeo/R/get.limits.R |only EMMAgeo-0.9.4/EMMAgeo/R/get.q.R |only EMMAgeo-0.9.4/EMMAgeo/R/interpolate.classes.R | 147 +++--- EMMAgeo-0.9.4/EMMAgeo/R/mix.EM.R | 104 ++-- EMMAgeo-0.9.4/EMMAgeo/R/model.em.R |only EMMAgeo-0.9.4/EMMAgeo/R/residual.EM.R | 95 +--- EMMAgeo-0.9.4/EMMAgeo/R/robust.EM.R | 308 ++++++++----- EMMAgeo-0.9.4/EMMAgeo/R/test.factors.R |only EMMAgeo-0.9.4/EMMAgeo/R/test.l.R |only EMMAgeo-0.9.4/EMMAgeo/R/test.l.max.R |only EMMAgeo-0.9.4/EMMAgeo/R/test.parameters.R | 501 +++++++++++++--------- EMMAgeo-0.9.4/EMMAgeo/R/test.robustness.R | 317 +++++++------- EMMAgeo-0.9.4/EMMAgeo/data/TR.rda |only EMMAgeo-0.9.4/EMMAgeo/data/X.rda |only EMMAgeo-0.9.4/EMMAgeo/data/rEM.rda |only EMMAgeo-0.9.4/EMMAgeo/inst |only EMMAgeo-0.9.4/EMMAgeo/man/EMMA.Rd | 205 ++++----- EMMAgeo-0.9.4/EMMAgeo/man/EMMAgeo-package.Rd | 43 - EMMAgeo-0.9.4/EMMAgeo/man/GUI.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/Mqs.uncertainty.Rd | 249 ++++++----- EMMAgeo-0.9.4/EMMAgeo/man/TR.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/X.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/check.data.Rd | 100 ++-- EMMAgeo-0.9.4/EMMAgeo/man/convert.units.Rd | 72 +-- EMMAgeo-0.9.4/EMMAgeo/man/create.EM.Rd | 117 ++--- EMMAgeo-0.9.4/EMMAgeo/man/define.limits.Rd | 87 ++- EMMAgeo-0.9.4/EMMAgeo/man/get.l.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/get.l.opt.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/get.limits.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/get.q.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/interpolate.classes.Rd | 77 ++- EMMAgeo-0.9.4/EMMAgeo/man/mix.EM.Rd | 115 ++--- EMMAgeo-0.9.4/EMMAgeo/man/model.em.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/rEM.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/residual.EM.Rd | 108 ++-- EMMAgeo-0.9.4/EMMAgeo/man/robust.EM.Rd | 192 ++++---- EMMAgeo-0.9.4/EMMAgeo/man/test.factors.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/test.l.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/test.l.max.Rd |only EMMAgeo-0.9.4/EMMAgeo/man/test.parameters.Rd | 194 +++++--- EMMAgeo-0.9.4/EMMAgeo/man/test.robustness.Rd | 258 ++++++----- 62 files changed, 2781 insertions(+), 2154 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-10 0.2.1
2014-08-04 0.2.0
2014-05-07 0.1.6
2014-01-23 0.1.5
2014-01-07 0.1.4
2013-11-18 0.1.3
2013-10-01 0.1.2
2013-06-26 0.1.1
2013-06-24 0.1.0
Title: Perform Common JavaScript Operations in Shiny Apps using Plain R
Code
Description: Perform common JavaScript operations in Shiny applications without
having to know any JavaScript. Examples include: hiding an element, disabling
an input, resetting an input back to its original value, delaying code execution
by a few seconds, and many more useful functions. 'shinyjs' also includes
a colour picker widget, a colour picker RStudio addin, and can also be used to
easily run your own custom JavaScript functions from R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between shinyjs versions 0.4.0 dated 2016-01-21 and 0.5.0 dated 2016-03-19
DESCRIPTION | 16 +++++----- MD5 | 55 ++++++++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 12 +++++++ R/colourInput.R | 1 R/colourPickerGadget.R |only R/extendShinyjs.R | 8 ----- R/ignoreme.R |only R/jsFunc-classFuncs.R | 2 - R/jsFunc-stateFuncs.R | 2 - R/jsFunc-visibilityFuncs.R | 2 - R/shinyjs.R | 5 +-- README.md | 24 +++++++++++---- build/vignette.rds |binary inst/doc/overview.Rmd | 16 +++++++--- inst/doc/overview.html | 18 +++++++---- inst/examples/colourInput/app.R | 8 +++-- inst/examples/demo/ui.R | 13 ++++---- inst/examples/sandbox/ui.R | 16 +++++----- inst/gadgets |only inst/img/colourPickerGadget.gif |only inst/rstudio |only inst/srcjs/shinyjs-default-funcs.js | 14 +++++++-- man/classFuncs.Rd | 2 - man/colourInput.Rd | 1 man/colourPicker.Rd |only man/shinyjs.Rd | 5 +-- man/stateFuncs.Rd | 2 - man/visibilityFuncs.Rd | 2 - vignettes/overview.Rmd | 16 +++++++--- 30 files changed, 156 insertions(+), 85 deletions(-)
Title: Using R to Install Stuff (Such As: R, Rtools, RStudio, Git, and
More!)
Description: R is great for installing software. Through the 'installr'
package you can automate the updating of R (on Windows, using updateR())
and install new software. Software installation is initiated through a
GUI (just run installr()), or through functions such as: install.Rtools(),
install.pandoc(), install.git(), and many more. The updateR() command
performs the following: finding the latest R version, downloading it,
running the installer, deleting the installation file, copy and updating
old packages to the new R installation.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com),
Barry Rowlingson [ctb],
Boris Hejblum [ctb],
Dason [ctb],
Felix Schonbrodt [ctb],
G. Grothendieck [ctb],
GERGELY DAROCZI [ctb],
Heuristic Andrew [ctb],
James [ctb] (http://stackoverflow.com/users/269476/james),
Thomas Leeper [ctb] (http://thomasleeper.com/),
VitoshKa [ctb],
Yihui Xie [ctb] (http://yihui.name),
Michael Friendly [ctb] (http://datavis.ca/),
Kornelius Rohmeyer [ctb] (http://algorithm-forge.com/techblog/),
Dieter Menne [ctb],
Tyler Hunt [ctb] (https://github.com/JackStat),
Takekatsu Hiramura [ctb] (https://github.com/hiratake55),
Berry Boessenkool [ctb] (https://github.com/BerryBoessenkool)
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between installr versions 0.17.0 dated 2015-09-14 and 0.17.4 dated 2016-03-19
ChangeLog | 158 +++++++++++++++++++++ DESCRIPTION | 10 - MD5 | 196 +++++++++++++-------------- NAMESPACE | 2 NEWS | 37 +++++ R/RStudio_CRAN_data.R | 14 - R/geo_functions.R | 4 R/install.R | 38 +++-- R/startup.R | 6 R/updateR.R | 41 +++-- R/xlsx2csv.R | 2 README.md | 7 TODO | 5 man/R_version_in_a_folder.Rd | 4 man/add.installr.GUI.Rd | 6 man/add_load_installr_on_startup_menu.Rd | 2 man/add_remove_installr_from_startup_menu.Rd | 2 man/add_to_.First_in_Rprofile.site.Rd | 2 man/ask.user.for.a.row.Rd | 6 man/ask.user.yn.question.Rd | 14 - man/barplot_package_users_per_day.Rd | 8 - man/browse.latest.R.NEWS.Rd | 8 - man/check.for.updates.R.Rd | 12 - man/check.integer.Rd | 2 man/checkMD5sums2.Rd | 2 man/copy.packages.between.libraries.Rd | 12 - man/cranometer.Rd | 16 +- man/create.global.library.Rd | 2 man/download_RStudio_CRAN_data.Rd | 10 - man/fetch_tag_from_Rd.Rd | 6 man/file.name.from.url.Rd | 2 man/format_RStudio_CRAN_data.Rd | 10 - man/freegeoip.Rd | 4 man/get.installed.R.folders.Rd | 12 - man/get_Rscript_PID.Rd | 10 - man/get_pid.Rd | 4 man/get_tasklist.Rd | 8 - man/install.7zip.Rd | 2 man/install.CMake.Rd | 11 - man/install.Cygwin.Rd | 2 man/install.FFmpeg.Rd | 4 man/install.GitHub.Rd | 2 man/install.GraphicsMagick.Rd | 2 man/install.ImageMagick.Rd | 2 man/install.LaTeX2RTF.Rd | 2 man/install.LyX.Rd | 4 man/install.MikTeX.Rd | 2 man/install.R.Rd | 10 - man/install.RStudio.Rd | 2 man/install.Rdevel.Rd | 12 - man/install.Rtools.Rd | 8 - man/install.SWFTools.Rd | 4 man/install.Texmaker.Rd | 2 man/install.URL.Rd | 2 man/install.git.Rd | 8 - man/install.notepadpp.Rd | 2 man/install.npptor.Rd | 2 man/install.packages.zip.Rd | 2 man/install.pandoc.Rd | 10 - man/installr-package.Rd | 2 man/installr.Rd | 6 man/is.RStudio.Rd | 4 man/is.Rgui.Rd | 4 man/is.empty.Rd | 12 - man/is.exe.installed.Rd | 4 man/is.windows.Rd | 2 man/is_in_.First_in_Rprofile.site.Rd | 2 man/kill_all_Rscript_s.Rd | 10 - man/kill_pid.Rd | 8 - man/kill_process.Rd | 8 - man/lineplot_package_downloads.Rd | 10 - man/load_installr_on_startup.Rd | 4 man/most_downloaded_packages.Rd | 8 - man/myip.Rd | 6 man/os.hibernate.Rd | 8 - man/os.lock.Rd | 6 man/os.manage.Rd | 14 - man/os.restart.Rd | 4 man/os.shutdown.Rd | 6 man/os.sleep.Rd | 4 man/package_authors.Rd | 10 - man/pkgDNLs_worldmapcolor.Rd | 8 - man/read_RStudio_CRAN_data.Rd | 8 - man/remove.installr.GUI.Rd | 2 man/remove_from_.First_in_Rprofile.site.Rd | 2 man/rename_r_to_R.Rd | 10 - man/require2.Rd | 2 man/restart_RGui.Rd | 2 man/rm_installr_from_startup.Rd | 4 man/source.https.Rd | 6 man/system.PATH.Rd | 6 man/turn.number.version.Rd | 4 man/turn.version.to.number.Rd | 2 man/turn.version.to.number1.Rd | 2 man/uninstall.R.Rd | 6 man/uninstall.packages.Rd | 6 man/up_folder.Rd | 2 man/updateR.Rd | 12 - man/xlsx2csv.Rd | 4 99 files changed, 622 insertions(+), 389 deletions(-)
Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Diff between hisse versions 1.4 dated 2016-01-07 and 1.5 dated 2016-03-19
DESCRIPTION | 8 - MD5 | 12 +- R/supportRegion.R | 14 +-- README.md | 2 inst/doc/hisse-vignette.Rmd | 19 ++-- inst/doc/hisse-vignette.html | 192 +++++++++++++++++++++++-------------------- vignettes/hisse-vignette.Rmd | 19 ++-- 7 files changed, 143 insertions(+), 123 deletions(-)
Title: Fuzzy Measure Tools for R
Description: Various tools for handling fuzzy measures, calculating Shapley value and Interaction index, Choquet and Sugeno integrals, as well as fitting fuzzy measures to empirical data are provided. Construction of fuzzy measures from empirical data is done by solving a linear programming problem by using 'lpsolve' package, whose source in C adapted to the R environment
is included. The description of the basic theory of fuzzy measures is in the manual in the Doc folder in this package.
Author: Gleb Beliakov [aut, cre],
Quan Vu [ctb],
Andrei Kelarev [ctb],
Michel Berkelaar [ctb],
Kjell Eikland [ctb],
Samuel E. Buttrey and others [ctb]
Maintainer: Gleb Beliakov <gleb@deakin.edu.au>
Diff between Rfmtool versions 1.1 dated 2016-03-17 and 1.2 dated 2016-03-19
DESCRIPTION | 4 ++-- MD5 | 8 ++++---- inst/doc/Rfmtool_manual.pdf |binary src/fuzzymeasurefit.cpp | 8 ++++++++ src/wrapper.cpp | 2 +- 5 files changed, 15 insertions(+), 7 deletions(-)
Title: Circle Plot with Bundled Edges
Description: Generates interactive circle plots with the nodes around the
circumference and linkages between the connected nodes using hierarchical
edge bundling via the D3 JavaScript library. See <http://d3js.org/> for more
information on D3.
Author: Mike Bostock [aut, cph] (d3.js library and much of edgebundle code in
htmlwidgets/lib, http://d3js.org),
Ellis Patrick [aut],
Kent Russell [ctb],
Garth Tarr [aut, cre]
Maintainer: Garth Tarr <garth.tarr@gmail.com>
Diff between edgebundleR versions 0.1.2 dated 2015-11-16 and 0.1.4 dated 2016-03-19
DESCRIPTION | 21 ++++++++++++++------- MD5 | 9 ++++++--- README.md | 12 ++++++++++-- inst/htmlwidgets/edgebundleR.yaml | 5 ++++- inst/htmlwidgets/lib/d3 |only 5 files changed, 34 insertions(+), 13 deletions(-)
Title: Print Nicely Formatted Comments for Use in Script Files
Description: Functions to
produce nicely formatted comments to use in R-scripts (or
Latex/HTML/markdown etc). A comment with formatting is printed to the
console and can then be copied to a script.
Author: Erik Bulow
Maintainer: Erik Bulow <erik.bulow@rccvast.se>
Diff between commentr versions 1.0.1 dated 2015-08-19 and 1.0.4 dated 2016-03-19
DESCRIPTION | 12 +++++----- MD5 | 23 ++++++++++--------- NAMESPACE | 2 - NEWS.md |only README.md | 16 +++++-------- man/comment.Rd | 42 +++++++++++++++++------------------ man/comment_end.Rd | 2 - man/comment_start.Rd | 2 - man/comment_width.Rd | 3 +- man/empty_line.Rd | 2 - man/full_line.Rd | 2 - man/out.Rd | 4 +-- tests/testthat/test-help_functions.R | 21 ++++++++--------- 13 files changed, 66 insertions(+), 65 deletions(-)
Title: Improved Access for Blind Users
Description: Blind users do not have access to the graphical output from R
without printing the content of graphics windows to an embosser of some kind. This
is not as immediate as is required for efficient access to statistical output.
The functions here are created so that blind people can make even better use
of R. This includes the text descriptions of graphs, convenience functions
to replace the functionality offered in many GUI front ends, and experimental
functionality for optimising graphical content to prepare it for embossing as
tactile images.
Author: A. Jonathan R. Godfrey [aut, cre], Duncan Murdoch [ctb], Greg Snow
[ctb], Henrik Bengtsson [ctb], James Curtis [ctb], Paul Murrell [ctb], Timothy Bilton [ctb], Yihui Xie
[ctb]
Maintainer: A. Jonathan R. Godfrey <a.j.godfrey@massey.ac.nz>
Diff between BrailleR versions 0.24.0 dated 2016-03-17 and 0.24.1 dated 2016-03-19
DESCRIPTION | 8 +-- MD5 | 28 ++++++------- R/Options.R | 27 +++++++------ R/SetupBrailleR.R | 36 ++++++++++------- R/zzz.R | 9 ++-- inst/NEWS | 6 ++ inst/doc/BrailleRHistory.html | 33 ++++++++-------- inst/doc/Ex1histograms.html | 85 ++++++++++++++++++++---------------------- inst/doc/GettingStarted.R | 8 +-- inst/doc/GettingStarted.Rmd | 4 - inst/doc/GettingStarted.html | 3 - man/BrailleR-package.Rd | 4 - man/SetOptions.Rd | 26 +++++------- man/SetupBrailleR.Rd | 6 +- vignettes/GettingStarted.Rmd | 4 - 15 files changed, 150 insertions(+), 137 deletions(-)
Title: Fitting Routines for the Vitality Family of Mortality Models
Description: Provides fitting routines for four versions of the
Vitality family of mortality models.
Author: Gregor Passolt, James J. Anderson, Ting Li, David H. Salinger, David J. Sharrow
Maintainer: David J. Sharrow <dsharrow@uw.edu>
Diff between vitality versions 1.1 dated 2014-12-10 and 1.2 dated 2016-03-19
DESCRIPTION | 9 +-- MD5 | 54 ++++++++++-------- NAMESPACE | 21 ++++++- R/mortality_rate.R | 28 +++++++++ R/vitality.4p.R | 107 ++++++++++++++++++++++++++++++------ R/vitality.6p.R | 151 ++++++++++++++++++++++++++++------------------------ data/daphnia.rda |only man/SurvFn.4p.Rd | 6 +- man/SurvFn.6p.Rd | 6 +- man/SurvFn.ex.4p.Rd |only man/SurvFn.ex.6p.Rd |only man/SurvFn.in.4p.Rd |only man/SurvFn.in.6p.Rd |only man/daphnia.Rd |only man/dataPrep.Rd | 2 man/ft.6p.Rd | 2 man/indexFinder.Rd | 4 - man/mu.vd1.6p.Rd | 2 man/mu.vd2.6p.Rd | 4 - man/mu.vd3.6p.Rd |only man/mu.vd4.6p.Rd |only man/plotting.4p.Rd | 4 - man/plotting.6p.Rd | 8 +- man/plotting.k.Rd | 4 - man/plotting.ku.Rd | 2 man/vft.4p.Rd | 2 man/vft.6p.Rd | 2 man/vitality.4p.Rd | 50 +++++++++++++---- man/vitality.6p.Rd | 48 ++++++++++++---- man/vitality.Rd | 47 ++++++++-------- man/vitality.k.Rd | 39 ++++++++++--- man/vitality.ku.Rd | 41 ++++++++++---- 32 files changed, 438 insertions(+), 205 deletions(-)
Title: Nested Association Mapping Analysis
Description: Designed for association studies in nested association mapping (NAM) panels, also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.
Author: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer: Alencar Xavier <xaviera@purdue.edu>
Diff between NAM versions 1.4.3 dated 2016-01-28 and 1.4.4 dated 2016-03-19
DESCRIPTION | 10 - MD5 | 24 +- R/gibbs.R | 319 +++++++++++++++++++++++++++++++++++++- R/gwas3c.R | 4 R/wrapGE.R | 203 ++++++++++++++++++------ inst/doc/Bioinformatics_2015.pdf |only inst/doc/gwa_GxE_Interactions.pdf |only inst/doc/vignette2.Rmd | 68 +------- inst/doc/vignette2.html | 64 ------- man/Internals.Rd | 1 man/NAM-package.Rd | 4 man/gibbs.Rd | 9 - man/gwas.Rd | 10 - vignettes/vignette2.Rmd | 68 +------- 14 files changed, 536 insertions(+), 248 deletions(-)
Title: Regression Models for Interval Censored Data
Description: Regression models for interval censored data. Currently supports Cox-PH and proportional odds models. Allows for both semi and fully parametric models. Includes functions for easy visual diagnostics of model fits and imputation of censored data. Includes fast algorithm for computing non-parametric maximum likelihood estimator.
Author: Clifford Anderson-Bergman; uses Marloes Maathuis's HeightMap algorithm (MLEcens::reduc)
Maintainer: Clifford Anderson-Bergman <pistacliffcho@gmail.com>
Diff between icenReg versions 1.3.3 dated 2016-01-07 and 1.3.4 dated 2016-03-19
icenReg-1.3.3/icenReg/src/Eigen_local |only icenReg-1.3.4/icenReg/DESCRIPTION | 13 icenReg-1.3.4/icenReg/MD5 | 306 -------- icenReg-1.3.4/icenReg/NAMESPACE | 5 icenReg-1.3.4/icenReg/NEWS | 8 icenReg-1.3.4/icenReg/R/Utilities.R | 59 + icenReg-1.3.4/icenReg/R/referenceClasses.R | 75 +- icenReg-1.3.4/icenReg/R/user_functions.R | 361 ++++++++-- icenReg-1.3.4/icenReg/data/IR_diabetes.RData |binary icenReg-1.3.4/icenReg/man/ic_np.Rd |only icenReg-1.3.4/icenReg/man/ic_par.Rd | 2 icenReg-1.3.4/icenReg/man/ic_sp.Rd | 11 icenReg-1.3.4/icenReg/man/imputeCens.Rd | 3 icenReg-1.3.4/icenReg/src/icenReg.cpp | 7 icenReg-1.3.4/icenReg/src/icenReg_files/EMICM.cpp |only icenReg-1.3.4/icenReg/src/icenReg_files/EMICM.h |only icenReg-1.3.4/icenReg/src/icenReg_files/basicUtilities.cpp | 82 ++ icenReg-1.3.4/icenReg/src/icenReg_files/experimentalCode.cpp | 4 icenReg-1.3.4/icenReg/src/icenReg_files/ic_sp_ch.cpp | 188 +---- icenReg-1.3.4/icenReg/src/icenReg_files/ic_sp_ch.h | 13 icenReg-1.3.4/icenReg/src/icenReg_files/ic_sp_gradDescent.cpp | 157 ++-- icenReg-1.3.4/icenReg/src/icenReg_files/regressionTransforms.cpp | 4 icenReg-1.3.4/icenReg/src/icenReg_files/regressionTransforms.h | 3 23 files changed, 713 insertions(+), 588 deletions(-)
Title: Graph-Based Change-Point Detection (g-Segmentation)
Description: Using an approach based on similarity graph to estimate change-point(s) and the corresponding p-values. Can be applied to any type of data (high-dimensional, non-Euclidean, etc.) as long as a reasonable similarity measure is available.
Author: Hao Chen and Nancy R. Zhang
Maintainer: Hao Chen <hxchen@ucdavis.edu>
Diff between gSeg versions 0.2 dated 2015-11-08 and 0.3 dated 2016-03-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/gSeg.r | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing,
manipulating and analyzing transaction data and patterns (frequent
itemsets and association rules). Also provides interfaces to
C implementations of the association mining algorithms Apriori and Eclat
by C. Borgelt.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph],
Christian Borgelt [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.3-1 dated 2015-12-14 and 1.4-0 dated 2016-03-19
DESCRIPTION | 8 - MD5 | 108 +++++++------- NAMESPACE | 18 +- R/AAADefs.R | 22 +-- R/AllClasses.R | 28 --- R/AllGenerics.R | 18 ++ R/abbreviate.R | 81 +++++------ R/associations.R | 20 ++ R/eclat.R | 5 R/interestMeasures.R | 47 ++---- R/is.redundant.R | 27 --- R/is.superset.R | 4 R/itemMatrix.R | 7 R/random.transactions.R | 6 R/read_write.R | 2 R/tidLists.R | 13 + R/transactions.R | 31 ++-- README.md | 7 build/vignette.rds |binary data/Adult.rda |binary data/AdultUCI.rda |binary data/Epub.rda |binary data/Groceries.rda |binary data/Income.rda |binary data/IncomeESL.rda |binary data/Mushroom.rda |binary data/SunBai.rda |binary inst/NEWS | 16 ++ inst/doc/arules.R | 4 inst/doc/arules.Rnw | 6 inst/doc/arules.pdf |binary man/SunBai.Rd | 2 man/abbreviate.Rd | 27 +-- man/aggregate.Rd | 4 man/associations-class.Rd | 2 man/interestMeasure.Rd | 7 man/is.redundant.Rd | 22 ++- man/is.superset.Rd | 4 man/itemCoding.Rd | 2 man/itemMatrix-class.Rd | 10 + man/match.Rd | 2 man/pmml.Rd | 28 +-- man/ruleInduction.Rd | 3 man/rules-class.Rd | 9 - man/sort.Rd | 29 +++ man/tidLists-class.Rd | 1 man/transactions-class.Rd | 23 ++- src/ptree.c | 148 ++++++++++++++++++-- src/similarity.c | 26 +++ tests/testthat/test-associations.R | 271 +++++++++++++++++++------------------ tests/testthat/test-itemMatrix.R | 34 ++++ tests/testthat/test-measures.R | 1 tests/testthat/test-tidLists.R | 6 tests/testthat/test-warm.R | 17 -- vignettes/arules.Rnw | 6 55 files changed, 710 insertions(+), 452 deletions(-)