Title: Everyone's Statistical Software
Description: A framework that brings together an abundance of common
statistical models found across packages into a unified interface, and
provides a common architecture for estimation and interpretation, as well
as bridging functions to absorb increasingly more models into the
collective library. Zelig allows each individual package, for each
statistical model, to be accessed by a common uniformly structured call and
set of arguments. Moreover, Zelig automates all the surrounding building
blocks of a statistical work-flow --procedures and algorithms that may be
essential to one user's application but which the original package
developer did not use in their own research and might not themselves
support. These include bootstrapping, jackknifing, and re-weighting of data.
In particular, Zelig automatically generates predicted and simulated
quantities of interest (such as relative risk ratios, average treatment
effects, first differences and predicted and expected values) to interpret
and visualize complex models.
Author: Christine Choirat, James Honaker, Kosuke Imai, Gary King, Olivia Lau
Maintainer: James Honaker <zelig-zee@iq.harvard.edu>
Diff between Zelig versions 5.0-10 dated 2016-03-14 and 5.0-11 dated 2016-03-22
DESCRIPTION | 8 +++--- MD5 | 8 +++--- R/create-json.R | 11 +++++++- R/model-zelig.R | 7 +++-- inst/JSON/zelig5models.json | 56 ++++++++++++++++++++++++++++++++------------ 5 files changed, 63 insertions(+), 27 deletions(-)
Title: Super Imposition by Translation and Rotation Growth Curve
Analysis
Description: Functions for fitting and plotting SITAR (Super Imposition by Translation And Rotation) growth curve models. SITAR is a shape-invariant model with a regression B-spline mean curve and subject-specific random effects on both the measurement and age scales.
Author: Tim Cole
Maintainer: Tim Cole <tim.cole@ucl.ac.uk>
Diff between sitar versions 1.0.3 dated 2015-07-27 and 1.0.4 dated 2016-03-22
sitar-1.0.3/sitar/R/lms2z.R |only sitar-1.0.3/sitar/man/lms2z.Rd |only sitar-1.0.4/sitar/DESCRIPTION | 8 - sitar-1.0.4/sitar/MD5 | 34 ++++---- sitar-1.0.4/sitar/NEWS | 19 ++++ sitar-1.0.4/sitar/R/LMS2z.R |only sitar-1.0.4/sitar/R/ifun.R | 20 ++-- sitar-1.0.4/sitar/R/plot.sitar.R | 7 + sitar-1.0.4/sitar/R/predict.sitar.R | 7 + sitar-1.0.4/sitar/R/sitar.R | 28 +++--- sitar-1.0.4/sitar/R/update.sitar.R | 148 +++++++++++++++--------------------- sitar-1.0.4/sitar/man/LMS2z.Rd |only sitar-1.0.4/sitar/man/LMSfit.Rd | 6 - sitar-1.0.4/sitar/man/bupdate.Rd | 4 sitar-1.0.4/sitar/man/cLMS.Rd | 18 ++-- sitar-1.0.4/sitar/man/ifun.Rd | 27 +++--- sitar-1.0.4/sitar/man/sitar.Rd | 4 sitar-1.0.4/sitar/man/uk90.Rd | 5 - sitar-1.0.4/sitar/man/ukwhopt.Rd | 3 sitar-1.0.4/sitar/man/who06.Rd | 2 20 files changed, 179 insertions(+), 161 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to help safely and efficiently organize Monte Carlo simulations in R.
The package controls the structure and back-end of Monte Carlo simulations
by utilizing a general generate-analyse-summarise strategy. The functions provided control
common simulation issues such as re-simulating non-convergent results, support parallel
back-end and MPI distributed computations, save and restore temporary files,
aggregate results across independent nodes, and provide native support for debugging.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 0.7 dated 2016-02-21 and 0.8 dated 2016-03-22
SimDesign-0.7/SimDesign/R/SimDesign_functions.R |only SimDesign-0.7/SimDesign/man/SimDesign_functions.Rd |only SimDesign-0.7/SimDesign/man/analyse.Rd |only SimDesign-0.7/SimDesign/man/generate.Rd |only SimDesign-0.7/SimDesign/man/summarise.Rd |only SimDesign-0.8/SimDesign/DESCRIPTION | 8 SimDesign-0.8/SimDesign/MD5 | 40 ++- SimDesign-0.8/SimDesign/NAMESPACE | 6 SimDesign-0.8/SimDesign/R/SimAnova.R |only SimDesign-0.8/SimDesign/R/SimClean.R |only SimDesign-0.8/SimDesign/R/SimDesign.R | 56 ++++ SimDesign-0.8/SimDesign/R/SimFunctions.R |only SimDesign-0.8/SimDesign/R/analysis.R | 16 - SimDesign-0.8/SimDesign/R/functions.R | 79 ++++-- SimDesign-0.8/SimDesign/R/runSimulation.R | 225 ++++++++++++------- SimDesign-0.8/SimDesign/R/summary_functions.R | 14 + SimDesign-0.8/SimDesign/build/vignette.rds |binary SimDesign-0.8/SimDesign/data |only SimDesign-0.8/SimDesign/man/Analyse.Rd |only SimDesign-0.8/SimDesign/man/BF_sim.Rd |only SimDesign-0.8/SimDesign/man/BF_sim_alternative.Rd |only SimDesign-0.8/SimDesign/man/ECR.Rd | 9 SimDesign-0.8/SimDesign/man/Generate.Rd |only SimDesign-0.8/SimDesign/man/SimAnova.Rd |only SimDesign-0.8/SimDesign/man/SimClean.Rd |only SimDesign-0.8/SimDesign/man/SimFunctions.Rd |only SimDesign-0.8/SimDesign/man/Summarise.Rd |only SimDesign-0.8/SimDesign/man/runSimulation.Rd | 202 ++++++++++------- SimDesign-0.8/SimDesign/tests/tests/test-SimDesign.R | 23 + 29 files changed, 467 insertions(+), 211 deletions(-)
Title: R Interface to Experigen
Description: Provides convenience functions to communicate with
an Experigen server. It is especially helpful with registered experiments, as
authentication with the server has to happen.
Author: Daniel Szeredi [aut, cre]
Maintainer: Daniel Szeredi <daniel@szeredi.hu>
Diff between Rexperigen versions 0.1.0 dated 2016-02-27 and 0.2.0 dated 2016-03-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/download.R | 33 ++++++++++++++++++++++++--------- tests/testthat/test-download.R | 28 ++++++++++++++++++++++------ 5 files changed, 59 insertions(+), 22 deletions(-)
Title: Quantile Regression Forests
Description: Quantile Regression Forests is a tree-based ensemble
method for estimation of conditional quantiles. It is
particularly well suited for high-dimensional data. Predictor
variables of mixed classes can be handled. The package is
dependent on the package randomForests, written by Andy Liaw.
Author: Nicolai Meinshausen, Lukas Schiesser
Maintainer: Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>
Diff between quantregForest versions 1.1 dated 2015-09-09 and 1.2 dated 2016-03-22
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/predict.all.R | 4 +--- R/predict.quantregForest.R | 6 +++--- build/vignette.rds |binary man/predict.quantregForest.Rd | 5 ++++- 6 files changed, 17 insertions(+), 16 deletions(-)
More information about quantregForest at CRAN
Permanent link
Title: A Fast, Flexible Tool for Sorting Phylogenetic Trees
Description: Screens and sorts phylogenetic trees in both traditional and
extended Newick format. Allows for the fast and flexible screening (within
a tree) of Exclusive clades that comprise only the target taxa and/or Non-
Exclusive clades that includes a defined portion of non-target taxa.
Author: Timothy Stephens [aut, cre, trl] (R port),
Debashish Bhattacharya [aut],
Mark Ragan [aut],
Cheong Xin Chan [aut, cph] (Original Perl implementation)
Maintainer: Timothy Stephens <timothy.stephens1@uqconnect.edu.au>
Diff between PhySortR versions 1.0.5 dated 2016-01-11 and 1.0.6 dated 2016-03-22
DESCRIPTION | 8 - MD5 | 12 +- NAMESPACE | 12 +- R/sortTrees.R | 210 +++++++++++++++++++++------------------------ man/PhySortR.Rd | 68 +++++++------- man/convert.eNewick.Rd | 52 +++++------ man/sortTrees.Rd | 228 ++++++++++++++++++++++++------------------------- 7 files changed, 290 insertions(+), 300 deletions(-)
Title: A Permutation Based Test for Biomarker Discovery in Microbiome
Data
Description: All the functions compiled in this package were created to perform permutation-based non-parametric analysis on microbiome data for biomarker discovery aims. This test executes thousands of comparisons in pairwise manner, after random shuffling of data into the different groups of study.
Author: Alfonso Benitez-Paez
Maintainer: Alfonso Benitez-Paez <abenitez@iata.csic.es>
Diff between permubiome versions 1.0 dated 2016-02-08 and 1.1 dated 2016-03-22
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/get.data.R | 20 ++++++++++++++++++++ R/plots.R | 2 +- build/partial.rdb |binary man/get.data.Rd | 39 +++++++++++++++++++++++++++++++++++++-- man/permubiome.Rd | 2 +- man/plots.Rd | 2 +- 8 files changed, 71 insertions(+), 16 deletions(-)
Title: Customisable Images of OpenStreetMap Data
Description: Produces customisable images of OpenStreetMap (OSM) data and enables data visualisation using OSM objects.
Author: Mark Padgham [aut, cre]
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between osmplotr versions 0.1-2 dated 2016-03-03 and 0.1-3 dated 2016-03-22
osmplotr-0.1-2/osmplotr/R/get-xylims.R |only osmplotr-0.1-2/osmplotr/R/group-osm-objects.R |only osmplotr-0.1-2/osmplotr/data/datalist |only osmplotr-0.1-2/osmplotr/man/get_xylims.Rd |only osmplotr-0.1-2/osmplotr/man/group_osm_objects.Rd |only osmplotr-0.1-3/osmplotr/DESCRIPTION | 13 - osmplotr-0.1-3/osmplotr/MD5 | 84 +++--- osmplotr-0.1-3/osmplotr/NAMESPACE | 13 - osmplotr-0.1-3/osmplotr/NEWS |only osmplotr-0.1-3/osmplotr/R/add-axes.R |only osmplotr-0.1-3/osmplotr/R/add-colourbar.R |only osmplotr-0.1-3/osmplotr/R/add-osm-groups.R |only osmplotr-0.1-3/osmplotr/R/add-osm-objects.R | 20 + osmplotr-0.1-3/osmplotr/R/add-osm-surface.R |only osmplotr-0.1-3/osmplotr/R/adjust_colours.R |only osmplotr-0.1-3/osmplotr/R/click-map.R | 4 osmplotr-0.1-3/osmplotr/R/extract-highway.R | 33 +- osmplotr-0.1-3/osmplotr/R/extract-highways.R | 15 - osmplotr-0.1-3/osmplotr/R/extract-osm-objects.R | 57 ++-- osmplotr-0.1-3/osmplotr/R/get-bbox.R |only osmplotr-0.1-3/osmplotr/R/highways2polygon.R | 4 osmplotr-0.1-3/osmplotr/R/make-osm-map.R | 32 +- osmplotr-0.1-3/osmplotr/R/osm-structures.R | 7 osmplotr-0.1-3/osmplotr/R/osmplotr.R | 68 ++++- osmplotr-0.1-3/osmplotr/R/plot-osm-basemap.R | 19 - osmplotr-0.1-3/osmplotr/build/vignette.rds |binary osmplotr-0.1-3/osmplotr/data/london.rda |binary osmplotr-0.1-3/osmplotr/inst/doc/downloading-data.R | 23 + osmplotr-0.1-3/osmplotr/inst/doc/downloading-data.Rmd | 23 + osmplotr-0.1-3/osmplotr/inst/doc/downloading-data.html | 19 - osmplotr-0.1-3/osmplotr/inst/doc/making-maps.R | 148 ++++++----- osmplotr-0.1-3/osmplotr/inst/doc/making-maps.Rmd | 186 +++++++------- osmplotr-0.1-3/osmplotr/inst/doc/making-maps.html | 218 ++++++++--------- osmplotr-0.1-3/osmplotr/man/add_axes.Rd |only osmplotr-0.1-3/osmplotr/man/add_colourbar.Rd |only osmplotr-0.1-3/osmplotr/man/add_osm_groups.Rd |only osmplotr-0.1-3/osmplotr/man/add_osm_objects.Rd | 4 osmplotr-0.1-3/osmplotr/man/add_osm_surface.Rd |only osmplotr-0.1-3/osmplotr/man/adjust_colours.Rd |only osmplotr-0.1-3/osmplotr/man/click_map.Rd | 2 osmplotr-0.1-3/osmplotr/man/extract_highway.Rd | 4 osmplotr-0.1-3/osmplotr/man/extract_highways.Rd | 10 osmplotr-0.1-3/osmplotr/man/extract_osm_objects.Rd | 19 + osmplotr-0.1-3/osmplotr/man/get_bbox.Rd |only osmplotr-0.1-3/osmplotr/man/highways2polygon.Rd | 4 osmplotr-0.1-3/osmplotr/man/make_osm_map.Rd | 6 osmplotr-0.1-3/osmplotr/man/osm_structures.Rd | 7 osmplotr-0.1-3/osmplotr/man/osmplotr.Rd | 77 +++++- osmplotr-0.1-3/osmplotr/man/plot_osm_basemap.Rd | 11 osmplotr-0.1-3/osmplotr/vignettes/downloading-data.Rmd | 23 + osmplotr-0.1-3/osmplotr/vignettes/downloading-data.md |only osmplotr-0.1-3/osmplotr/vignettes/making-maps.Rmd | 186 +++++++------- osmplotr-0.1-3/osmplotr/vignettes/making-maps.md |only 53 files changed, 810 insertions(+), 529 deletions(-)
Title: Discovering Multiple, Statistically-Equivalent Signatures
Description: Feature selection methods for identifying minimal, statistically-equivalent and equally-predictive feature subsets.
The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin.
Author: Ioannis Tsamardinos, Vincenzo Lagani, Giorgos Athineou, Michail Tsagris, Giorgos Borboudakis
Maintainer: Michail Tsagris <mtsagris@csd.uoc.gr>
Diff between MXM versions 0.7 dated 2016-03-04 and 0.8 dated 2016-03-22
MXM-0.7/MXM/R/censIndLR.R |only MXM-0.7/MXM/man/censIndLR.Rd |only MXM-0.7/MXM/man/testIndMVReg.Rd |only MXM-0.7/MXM/man/testIndNB.Rd |only MXM-0.7/MXM/man/testIndRQ.Rd |only MXM-0.7/MXM/man/testIndSpearman.Rd |only MXM-0.7/MXM/man/testIndZIP.Rd |only MXM-0.8/MXM/DESCRIPTION | 10 - MXM-0.8/MXM/MD5 | 84 ++++++++-------- MXM-0.8/MXM/NAMESPACE | 14 +- MXM-0.8/MXM/R/MMPC.R | 194 ++++++++++--------------------------- MXM-0.8/MXM/R/SES.R | 100 +++++++++++++------ MXM-0.8/MXM/R/cat.ci.R | 5 MXM-0.8/MXM/R/censIndCR.R |only MXM-0.8/MXM/R/censIndWR.R |only MXM-0.8/MXM/R/cv.ses.R | 21 ++-- MXM-0.8/MXM/R/gSquare.R | 4 MXM-0.8/MXM/R/mmhc.skel.R | 6 - MXM-0.8/MXM/R/model.R | 135 ++++++++++++++----------- MXM-0.8/MXM/R/pc.con.R | 65 +++++++----- MXM-0.8/MXM/R/pc.skel.R | 52 ++++----- MXM-0.8/MXM/R/testIndBeta.R | 20 +-- MXM-0.8/MXM/R/testIndClogit.R |only MXM-0.8/MXM/R/testIndFisher.R | 22 ++-- MXM-0.8/MXM/R/testIndGLMM.R | 20 +-- MXM-0.8/MXM/R/testIndLogistic.R | 34 +++--- MXM-0.8/MXM/R/testIndMVreg.R | 22 ++-- MXM-0.8/MXM/R/testIndNB.R | 22 ++-- MXM-0.8/MXM/R/testIndPois.R | 22 ++-- MXM-0.8/MXM/R/testIndRQ.R | 24 ++-- MXM-0.8/MXM/R/testIndReg.R | 23 ++-- MXM-0.8/MXM/R/testIndSpearman.R | 24 ++-- MXM-0.8/MXM/R/testIndSpeedglm.R |only MXM-0.8/MXM/R/testIndZIP.R | 57 +++++----- MXM-0.8/MXM/man/MXM-package.Rd | 13 +- MXM-0.8/MXM/man/MXMCondIndTests.Rd | 22 ++-- MXM-0.8/MXM/man/SES.Rd | 23 ++-- MXM-0.8/MXM/man/censIndCR.Rd |only MXM-0.8/MXM/man/cv.ses.Rd | 2 MXM-0.8/MXM/man/gSquare.Rd | 12 +- MXM-0.8/MXM/man/mmhc.skel.Rd | 3 MXM-0.8/MXM/man/pc.skel.Rd | 5 MXM-0.8/MXM/man/testIndBeta.Rd | 4 MXM-0.8/MXM/man/testIndClogit.Rd |only MXM-0.8/MXM/man/testIndFisher.Rd | 30 +++-- MXM-0.8/MXM/man/testIndGLMM.Rd | 2 MXM-0.8/MXM/man/testIndLogistic.Rd | 15 +- MXM-0.8/MXM/man/testIndPois.Rd | 36 +++++- MXM-0.8/MXM/man/testIndReg.Rd | 47 ++++++-- MXM-0.8/MXM/man/testIndSpeedglm.Rd |only 50 files changed, 638 insertions(+), 556 deletions(-)
Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Description: Extensive functions for the theory of L-moments (LMs) in addition to probability-weighted moments (PWMs), and parameter (p) estimation for numerous familiar and not-so-familiar distributions. Estimation of LMs for the same distributions is provided as are L-moment ratio diagrams. Estimation of LMs for right-tail and left-tail censoring by known or unknown threshold and also by indicator variable is available. Asymmetric trimmed LMs (TL-moments, TLMs) are supported as are numerical integrations to dynamically compute trajectories of select TLM ratios for TL-moment ratio diagram construction. LMs of residual (resid.) and reversed (rev.) resid. life are implemented along with 13 operators on quantile functions that are useful in reliability, lifetime, and survival analysis. Exact analytical bootstrap estimates of order statistics, LMs, and variances-covariances of LMs are provided. The Harri-Coble Tau34-squared Test for Normality is available. Distribution support with "L" (LMs), "TL" (TLMs) and added (+) support for right-tail censoring (RC) encompasses: Asymmetric (Asy.) Exponential (Exp.) Power [L], Asy. Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen.) Exp. Poisson [L], Gen. Extreme Value [L], Gen. Lambda [L,TL], Gen. Logistic [L), Gen. Normal [L], Gen. Pareto [L+RC, TL], Govindarajulu [L], Gumbel [L], Kappa [L], Kappa-Mu [L], Kumaraswamy [L], Laplace [L], Linear Mean Residual Quantile Function [L], Normal [L], 3-p log-Normal [L], Pearson Type III [L], Rayleigh [L], Rev. Gumbel [L+RC], Rice/Rician (L), Slash [TL], 3-p Student t [L], Truncated Exponential [L], Wakeby [L], and Weibull [L]. LMs have multivariate analogs; the sample L-comoments (LCMs) are implemented and might have considerable application with copulas because LCMs measure asymmetric association and higher comoments or comovements of variables.
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between lmomco versions 2.1.4 dated 2015-04-21 and 2.2.2 dated 2016-03-22
lmomco-2.1.4/lmomco/R/genci.R |only lmomco-2.1.4/lmomco/R/qua2ci.R |only lmomco-2.1.4/lmomco/man/genci.Rd |only lmomco-2.1.4/lmomco/man/qua2ci.Rd |only lmomco-2.2.2/lmomco/DESCRIPTION | 13 lmomco-2.2.2/lmomco/MD5 | 340 +++++++------- lmomco-2.2.2/lmomco/NAMESPACE | 20 lmomco-2.2.2/lmomco/NEWS | 116 ++++ lmomco-2.2.2/lmomco/R/BEhypergeo.R | 2 lmomco-2.2.2/lmomco/R/TLmom.R | 7 lmomco-2.2.2/lmomco/R/TLmoms.R | 15 lmomco-2.2.2/lmomco/R/add.lmomco.axis.R | 28 - lmomco-2.2.2/lmomco/R/add.log.axis.R |only lmomco-2.2.2/lmomco/R/are.par.valid.R | 3 lmomco-2.2.2/lmomco/R/cdf2lmom.R | 42 - lmomco-2.2.2/lmomco/R/cdf2lmoms.R | 3 lmomco-2.2.2/lmomco/R/cdfaep4.R | 40 - lmomco-2.2.2/lmomco/R/cdfcau.R | 12 lmomco-2.2.2/lmomco/R/cdfemu.R | 42 - lmomco-2.2.2/lmomco/R/cdfexp.R | 10 lmomco-2.2.2/lmomco/R/cdfgam.R | 15 lmomco-2.2.2/lmomco/R/cdfgep.R | 6 lmomco-2.2.2/lmomco/R/cdfgev.R | 37 - lmomco-2.2.2/lmomco/R/cdfgld.R | 62 +- lmomco-2.2.2/lmomco/R/cdfglo.R | 37 - lmomco-2.2.2/lmomco/R/cdfgno.R | 35 - lmomco-2.2.2/lmomco/R/cdfgov.R | 34 - lmomco-2.2.2/lmomco/R/cdfgpa.R | 38 - lmomco-2.2.2/lmomco/R/cdfgum.R | 8 lmomco-2.2.2/lmomco/R/cdfkap.R | 53 -- lmomco-2.2.2/lmomco/R/cdfkmu.R | 79 ++- lmomco-2.2.2/lmomco/R/cdfkur.R | 13 lmomco-2.2.2/lmomco/R/cdflap.R | 14 lmomco-2.2.2/lmomco/R/cdflmrq.R | 34 - lmomco-2.2.2/lmomco/R/cdfln3.R | 16 lmomco-2.2.2/lmomco/R/cdfnor.R | 7 lmomco-2.2.2/lmomco/R/cdfpe3.R | 39 - lmomco-2.2.2/lmomco/R/cdfray.R | 15 lmomco-2.2.2/lmomco/R/cdfrevgum.R | 15 lmomco-2.2.2/lmomco/R/cdfrice.R | 32 - lmomco-2.2.2/lmomco/R/cdfsla.R | 26 - lmomco-2.2.2/lmomco/R/cdfst3.R | 13 lmomco-2.2.2/lmomco/R/cdftexp.R | 31 - lmomco-2.2.2/lmomco/R/cdftri.R | 20 lmomco-2.2.2/lmomco/R/cdfwak.R | 79 +-- lmomco-2.2.2/lmomco/R/check.pdf.R | 49 +- lmomco-2.2.2/lmomco/R/disfitqua.R |only lmomco-2.2.2/lmomco/R/dlmomco.R | 3 lmomco-2.2.2/lmomco/R/genci.simple.R |only lmomco-2.2.2/lmomco/R/gini.mean.diff.R | 6 lmomco-2.2.2/lmomco/R/hlmomco.R | 1 lmomco-2.2.2/lmomco/R/lmomemu.R | 3 lmomco-2.2.2/lmomco/R/lmomkmu.R | 57 -- lmomco-2.2.2/lmomco/R/lmomrice.R | 3 lmomco-2.2.2/lmomco/R/lmoms.cov.R |only lmomco-2.2.2/lmomco/R/lmomtri.R | 58 +- lmomco-2.2.2/lmomco/R/lmrdia.R | 15 lmomco-2.2.2/lmomco/R/nonexceeds.R | 23 lmomco-2.2.2/lmomco/R/partri.R | 55 +- lmomco-2.2.2/lmomco/R/pdfaep4.R | 12 lmomco-2.2.2/lmomco/R/pdfcau.R | 12 lmomco-2.2.2/lmomco/R/pdfemu.R | 51 +- lmomco-2.2.2/lmomco/R/pdfexp.R | 16 lmomco-2.2.2/lmomco/R/pdfgam.R | 16 lmomco-2.2.2/lmomco/R/pdfgep.R | 17 lmomco-2.2.2/lmomco/R/pdfgev.R | 40 - lmomco-2.2.2/lmomco/R/pdfgld.R | 34 - lmomco-2.2.2/lmomco/R/pdfglo.R | 34 - lmomco-2.2.2/lmomco/R/pdfgno.R | 36 - lmomco-2.2.2/lmomco/R/pdfgov.R | 24 lmomco-2.2.2/lmomco/R/pdfgpa.R | 31 - lmomco-2.2.2/lmomco/R/pdfgum.R | 17 lmomco-2.2.2/lmomco/R/pdfkap.R | 57 -- lmomco-2.2.2/lmomco/R/pdfkmu.R | 103 ++-- lmomco-2.2.2/lmomco/R/pdfkur.R | 17 lmomco-2.2.2/lmomco/R/pdflap.R | 12 lmomco-2.2.2/lmomco/R/pdflmrq.R | 17 lmomco-2.2.2/lmomco/R/pdfln3.R | 8 lmomco-2.2.2/lmomco/R/pdfnor.R | 7 lmomco-2.2.2/lmomco/R/pdfpe3.R | 57 -- lmomco-2.2.2/lmomco/R/pdfray.R | 20 lmomco-2.2.2/lmomco/R/pdfrevgum.R | 12 lmomco-2.2.2/lmomco/R/pdfrice.R | 27 - lmomco-2.2.2/lmomco/R/pdfsla.R | 28 - lmomco-2.2.2/lmomco/R/pdfst3.R | 10 lmomco-2.2.2/lmomco/R/pdftexp.R | 31 - lmomco-2.2.2/lmomco/R/pdftri.R | 42 - lmomco-2.2.2/lmomco/R/pdfwak.R | 29 - lmomco-2.2.2/lmomco/R/pfactor.bernstein.R | 2 lmomco-2.2.2/lmomco/R/prettydist.R | 2 lmomco-2.2.2/lmomco/R/qua2ci.cov.R |only lmomco-2.2.2/lmomco/R/qua2ci.simple.R |only lmomco-2.2.2/lmomco/R/quaaep4.R | 36 - lmomco-2.2.2/lmomco/R/quaaep4kapmix.R | 3 lmomco-2.2.2/lmomco/R/quacau.R | 12 lmomco-2.2.2/lmomco/R/quaemu.R | 17 lmomco-2.2.2/lmomco/R/quaexp.R | 7 lmomco-2.2.2/lmomco/R/quagam.R | 14 lmomco-2.2.2/lmomco/R/quagep.R | 12 lmomco-2.2.2/lmomco/R/quagev.R | 27 - lmomco-2.2.2/lmomco/R/quagld.R | 20 lmomco-2.2.2/lmomco/R/quaglo.R | 28 - lmomco-2.2.2/lmomco/R/quagno.R | 21 lmomco-2.2.2/lmomco/R/quagov.R | 17 lmomco-2.2.2/lmomco/R/quagpa.R | 25 - lmomco-2.2.2/lmomco/R/quagum.R | 13 lmomco-2.2.2/lmomco/R/quakap.R | 49 -- lmomco-2.2.2/lmomco/R/quakmu.R | 106 ++-- lmomco-2.2.2/lmomco/R/quakur.R | 13 lmomco-2.2.2/lmomco/R/qualap.R | 11 lmomco-2.2.2/lmomco/R/qualmrq.R | 1 lmomco-2.2.2/lmomco/R/qualn3.R | 6 lmomco-2.2.2/lmomco/R/quanor.R | 7 lmomco-2.2.2/lmomco/R/quape3.R | 45 - lmomco-2.2.2/lmomco/R/quaray.R | 13 lmomco-2.2.2/lmomco/R/quarevgum.R | 15 lmomco-2.2.2/lmomco/R/quarice.R | 33 - lmomco-2.2.2/lmomco/R/quasla.R | 26 - lmomco-2.2.2/lmomco/R/quatexp.R | 29 - lmomco-2.2.2/lmomco/R/quatri.R | 14 lmomco-2.2.2/lmomco/R/quawak.R | 50 -- lmomco-2.2.2/lmomco/R/rmlmomco.R | 17 lmomco-2.2.2/lmomco/R/rmvarlmomco.R | 14 lmomco-2.2.2/lmomco/R/rrmlmomco.R | 16 lmomco-2.2.2/lmomco/R/rrmvarlmomco.R | 14 lmomco-2.2.2/lmomco/R/supdist.R | 41 + lmomco-2.2.2/lmomco/R/tau34sq.normtest.R | 28 - lmomco-2.2.2/lmomco/R/theoTLmoms.R | 20 lmomco-2.2.2/lmomco/R/vec2par.R | 4 lmomco-2.2.2/lmomco/R/x2xlo.R | 10 lmomco-2.2.2/lmomco/R/z.par2cdf.R | 35 - lmomco-2.2.2/lmomco/R/z.par2qua.R | 42 + lmomco-2.2.2/lmomco/inst/ACKNOWLEDGEMENTS | 2 lmomco-2.2.2/lmomco/inst/CITATION | 18 lmomco-2.2.2/lmomco/inst/ERRATA_FOR_ISBN9781463508418.txt | 10 lmomco-2.2.2/lmomco/man/TLmoms.Rd | 6 lmomco-2.2.2/lmomco/man/add.lmomco.axis.Rd | 11 lmomco-2.2.2/lmomco/man/add.log.axis.Rd |only lmomco-2.2.2/lmomco/man/are.par.valid.Rd | 3 lmomco-2.2.2/lmomco/man/cdf2lmoms.Rd | 2 lmomco-2.2.2/lmomco/man/cdfgld.Rd | 7 lmomco-2.2.2/lmomco/man/cdfkmu.Rd | 51 +- lmomco-2.2.2/lmomco/man/cdfwak.Rd | 4 lmomco-2.2.2/lmomco/man/check.pdf.Rd | 17 lmomco-2.2.2/lmomco/man/disfitqua.Rd |only lmomco-2.2.2/lmomco/man/dist.list.Rd | 19 lmomco-2.2.2/lmomco/man/gen.freq.curves.Rd | 6 lmomco-2.2.2/lmomco/man/genci.simple.Rd |only lmomco-2.2.2/lmomco/man/lmomco-package.Rd | 6 lmomco-2.2.2/lmomco/man/lmomgov.Rd | 2 lmomco-2.2.2/lmomco/man/lmomkmu.Rd | 2 lmomco-2.2.2/lmomco/man/lmoms.bootbarvar.Rd | 2 lmomco-2.2.2/lmomco/man/lmoms.cov.Rd |only lmomco-2.2.2/lmomco/man/lmomsRCmark.Rd | 15 lmomco-2.2.2/lmomco/man/lmomtri.Rd | 56 +- lmomco-2.2.2/lmomco/man/lmrdia.Rd | 3 lmomco-2.2.2/lmomco/man/nonexceeds.Rd | 5 lmomco-2.2.2/lmomco/man/parglo.Rd | 12 lmomco-2.2.2/lmomco/man/parkmu.Rd | 3 lmomco-2.2.2/lmomco/man/pdfemu.Rd | 6 lmomco-2.2.2/lmomco/man/pdfgld.Rd | 6 lmomco-2.2.2/lmomco/man/pdfkmu.Rd | 6 lmomco-2.2.2/lmomco/man/pdfrice.Rd | 36 - lmomco-2.2.2/lmomco/man/pdfwei.Rd | 6 lmomco-2.2.2/lmomco/man/pmoms.Rd | 2 lmomco-2.2.2/lmomco/man/prettydist.Rd | 3 lmomco-2.2.2/lmomco/man/qua2ci.cov.Rd |only lmomco-2.2.2/lmomco/man/qua2ci.simple.Rd |only lmomco-2.2.2/lmomco/man/quagep.Rd | 2 lmomco-2.2.2/lmomco/man/quagld.Rd | 4 lmomco-2.2.2/lmomco/man/quagpa.Rd | 12 lmomco-2.2.2/lmomco/man/quakmu.Rd | 11 lmomco-2.2.2/lmomco/man/quarice.Rd | 7 lmomco-2.2.2/lmomco/man/quatexp.Rd | 5 lmomco-2.2.2/lmomco/man/rmvarlmomco.Rd | 9 lmomco-2.2.2/lmomco/man/supdist.Rd | 12 lmomco-2.2.2/lmomco/man/theoTLmoms.Rd | 71 ++ lmomco-2.2.2/lmomco/man/z.par2cdf.Rd | 45 + lmomco-2.2.2/lmomco/man/z.par2qua.Rd | 31 - 179 files changed, 2040 insertions(+), 1952 deletions(-)
Title: Basic Statistical Functions for Package 'ff'
Description: Extends the out of memory vectors of 'ff' with
statistical functions and other utilities to ease their usage.
Author: Edwin de Jonge, Jan Wijffels, Jan van der Laan
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between ffbase versions 0.12.1 dated 2015-06-05 and 0.12.3 dated 2016-03-22
ffbase-0.12.1/ffbase/tests/testthat/tmp.fwf |only ffbase-0.12.3/ffbase/DESCRIPTION | 13 ffbase-0.12.3/ffbase/MD5 | 322 ++++----- ffbase-0.12.3/ffbase/NAMESPACE | 448 ++++++------ ffbase-0.12.3/ffbase/NEWS | 259 +++---- ffbase-0.12.3/ffbase/R/Summary_ff.R | 236 +++--- ffbase-0.12.3/ffbase/R/as.R | 204 ++--- ffbase-0.12.3/ffbase/R/auxilary.R | 318 ++++---- ffbase-0.12.3/ffbase/R/bigglm.R | 134 +-- ffbase-0.12.3/ffbase/R/binned_sum.R | 162 ++-- ffbase-0.12.3/ffbase/R/binned_sumsq.R | 156 ++-- ffbase-0.12.3/ffbase/R/binned_tabulate.R | 190 ++--- ffbase-0.12.3/ffbase/R/byMean.R | 160 ++-- ffbase-0.12.3/ffbase/R/bySum.R | 140 +-- ffbase-0.12.3/ffbase/R/chunkify.R | 118 +-- ffbase-0.12.3/ffbase/R/compact.R | 112 +-- ffbase-0.12.3/ffbase/R/cumsum.R | 142 +-- ffbase-0.12.3/ffbase/R/cut_ff.R | 106 +- ffbase-0.12.3/ffbase/R/date_formatting.R | 56 - ffbase-0.12.3/ffbase/R/diff_ff.R | 66 - ffbase-0.12.3/ffbase/R/droplevels.R | 108 +-- ffbase-0.12.3/ffbase/R/duplicated.R | 158 ++-- ffbase-0.12.3/ffbase/R/expand_ffgrid.R | 140 +-- ffbase-0.12.3/ffbase/R/extract.R | 189 +++-- ffbase-0.12.3/ffbase/R/ffappend.R | 268 +++---- ffbase-0.12.3/ffbase/R/ffdfdply.R | 226 +++--- ffbase-0.12.3/ffbase/R/ffdfsave.R | 64 - ffbase-0.12.3/ffbase/R/ffdfwith.R | 144 ++-- ffbase-0.12.3/ffbase/R/ffifelse.R | 68 - ffbase-0.12.3/ffbase/R/ffmatch.R | 226 +++--- ffbase-0.12.3/ffbase/R/ffordered.R | 106 +- ffbase-0.12.3/ffbase/R/ffrandom.R | 74 +- ffbase-0.12.3/ffbase/R/ffrep.R | 116 +-- ffbase-0.12.3/ffbase/R/ffseq.R | 298 ++++---- ffbase-0.12.3/ffbase/R/ffwhich.R | 166 ++-- ffbase-0.12.3/ffbase/R/hist2d.R | 86 +- ffbase-0.12.3/ffbase/R/hist_ff.R | 106 +- ffbase-0.12.3/ffbase/R/ikey.R | 44 - ffbase-0.12.3/ffbase/R/isNA.R | 80 +- ffbase-0.12.3/ffbase/R/laf_to_ffdf.R | 118 +-- ffbase-0.12.3/ffbase/R/logging.R | 66 - ffbase-0.12.3/ffbase/R/mean.R | 70 - ffbase-0.12.3/ffbase/R/merge.R | 232 +++--- ffbase-0.12.3/ffbase/R/pkg.R | 153 ++-- ffbase-0.12.3/ffbase/R/quantile_ff.R | 70 - ffbase-0.12.3/ffbase/R/rbind_ffdf.R | 96 +- ffbase-0.12.3/ffbase/R/rev_ff.R | 26 ffbase-0.12.3/ffbase/R/rle_ff.R | 94 +- ffbase-0.12.3/ffbase/R/save_ffdf.R | 436 ++++++------ ffbase-0.12.3/ffbase/R/subset.R | 100 +- ffbase-0.12.3/ffbase/R/table_ff.R | 230 +++--- ffbase-0.12.3/ffbase/R/tabulate_ff.R | 128 +-- ffbase-0.12.3/ffbase/R/transform.R | 78 +- ffbase-0.12.3/ffbase/R/tsum.R | 164 ++-- ffbase-0.12.3/ffbase/R/unique.R | 192 ++--- ffbase-0.12.3/ffbase/R/with.R | 284 +++---- ffbase-0.12.3/ffbase/R/zzz.R | 6 ffbase-0.12.3/ffbase/man/all.ff.Rd | 48 - ffbase-0.12.3/ffbase/man/any.ff.Rd | 48 - ffbase-0.12.3/ffbase/man/as.Date.ff_vector.Rd | 44 - ffbase-0.12.3/ffbase/man/as.character.ff.Rd | 64 - ffbase-0.12.3/ffbase/man/as.ffdf.ffdf.Rd | 34 ffbase-0.12.3/ffbase/man/as.ram.ffdf.Rd | 40 - ffbase-0.12.3/ffbase/man/bigglm.ffdf.Rd | 92 +- ffbase-0.12.3/ffbase/man/binned_sum.Rd | 60 - ffbase-0.12.3/ffbase/man/binned_sumsq.Rd | 84 +- ffbase-0.12.3/ffbase/man/binned_tabulate.Rd | 76 +- ffbase-0.12.3/ffbase/man/byMean.Rd | 52 - ffbase-0.12.3/ffbase/man/bySum.Rd | 60 - ffbase-0.12.3/ffbase/man/c.ff.Rd | 42 - ffbase-0.12.3/ffbase/man/chunkexpr.Rd | 48 - ffbase-0.12.3/ffbase/man/chunkify.Rd | 40 - ffbase-0.12.3/ffbase/man/compact.Rd | 48 - ffbase-0.12.3/ffbase/man/condMean.Rd | 48 - ffbase-0.12.3/ffbase/man/condSum.Rd | 48 - ffbase-0.12.3/ffbase/man/cumsum.ff.Rd | 110 +-- ffbase-0.12.3/ffbase/man/cut.ff.Rd | 56 - ffbase-0.12.3/ffbase/man/diff.ff.Rd | 42 - ffbase-0.12.3/ffbase/man/droplevels.ff.Rd | 56 - ffbase-0.12.3/ffbase/man/droplevels.ffdf.Rd | 60 - ffbase-0.12.3/ffbase/man/duplicated.ff.Rd | 136 +-- ffbase-0.12.3/ffbase/man/expand.ffgrid.Rd | 84 +- ffbase-0.12.3/ffbase/man/ff_arithmetic.Rd | 90 +- ffbase-0.12.3/ffbase/man/ff_math.Rd | 236 +++--- ffbase-0.12.3/ffbase/man/ff_ops.Rd | 104 +- ffbase-0.12.3/ffbase/man/ffappend.Rd | 56 - ffbase-0.12.3/ffbase/man/ffbase-package.Rd | 186 ++--- ffbase-0.12.3/ffbase/man/ffdfappend.Rd | 60 - ffbase-0.12.3/ffbase/man/ffdfdply.Rd | 144 ++-- ffbase-0.12.3/ffbase/man/ffdfrbind.fill.Rd | 68 - ffbase-0.12.3/ffbase/man/ffdfwith.Rd | 80 +- ffbase-0.12.3/ffbase/man/ffextract.Rd | 130 +-- ffbase-0.12.3/ffbase/man/ffextractffdf.Rd |only ffbase-0.12.3/ffbase/man/ffifelse.Rd | 72 +- ffbase-0.12.3/ffbase/man/ffmatch.Rd | 140 +-- ffbase-0.12.3/ffbase/man/ffordered.Rd | 86 +- ffbase-0.12.3/ffbase/man/ffrandom.Rd | 94 +- ffbase-0.12.3/ffbase/man/ffrep.int.Rd | 84 +- ffbase-0.12.3/ffbase/man/ffseq.Rd | 102 +- ffbase-0.12.3/ffbase/man/ffseq_len.Rd | 78 +- ffbase-0.12.3/ffbase/man/ffwhich.Rd | 78 +- ffbase-0.12.3/ffbase/man/format.ff_vector.Rd | 44 - ffbase-0.12.3/ffbase/man/grouprunningcumsum.Rd | 46 - ffbase-0.12.3/ffbase/man/hist.ff.Rd | 48 - ffbase-0.12.3/ffbase/man/hist2d.ff.Rd | 26 ffbase-0.12.3/ffbase/man/ikey.Rd | 62 - ffbase-0.12.3/ffbase/man/is.na.ff.Rd | 91 +- ffbase-0.12.3/ffbase/man/laf_to_ffdf.Rd | 48 - ffbase-0.12.3/ffbase/man/load.ffdf.Rd | 96 +- ffbase-0.12.3/ffbase/man/mean.ff.Rd | 60 - ffbase-0.12.3/ffbase/man/merge.ffdf.Rd | 226 +++--- ffbase-0.12.3/ffbase/man/min.ff.Rd | 86 +- ffbase-0.12.3/ffbase/man/move.ffdf.Rd | 106 +- ffbase-0.12.3/ffbase/man/pack.ffdf.Rd | 96 +- ffbase-0.12.3/ffbase/man/pkg-deprecated.Rd | 42 - ffbase-0.12.3/ffbase/man/quantile.ff.Rd | 54 - ffbase-0.12.3/ffbase/man/rle_ff.Rd | 64 - ffbase-0.12.3/ffbase/man/save.ffdf.Rd | 144 ++-- ffbase-0.12.3/ffbase/man/set_ffbase_logging.Rd | 34 ffbase-0.12.3/ffbase/man/subset.ff.Rd | 46 - ffbase-0.12.3/ffbase/man/sum.ff.Rd | 48 - ffbase-0.12.3/ffbase/man/table.Rd | 84 +- ffbase-0.12.3/ffbase/man/tabulate.ff.Rd | 70 - ffbase-0.12.3/ffbase/man/transform.ffdf.Rd | 54 - ffbase-0.12.3/ffbase/man/unique.ff.Rd | 130 +-- ffbase-0.12.3/ffbase/man/unpack.ffdf.Rd | 100 +- ffbase-0.12.3/ffbase/man/with.ffdf.Rd | 82 +- ffbase-0.12.3/ffbase/man/within.ffdf.Rd | 60 - ffbase-0.12.3/ffbase/src/binned_sumsq.c | 2 ffbase-0.12.3/ffbase/tests/testthat.R | 6 ffbase-0.12.3/ffbase/tests/testthat/testSummary.R | 146 ++-- ffbase-0.12.3/ffbase/tests/testthat/testchunkify.R | 44 - ffbase-0.12.3/ffbase/tests/testthat/testcumsum.R | 90 +- ffbase-0.12.3/ffbase/tests/testthat/testcut_ff.R | 24 ffbase-0.12.3/ffbase/tests/testthat/testdroplevels.R | 58 - ffbase-0.12.3/ffbase/tests/testthat/testduplicated.R | 44 - ffbase-0.12.3/ffbase/tests/testthat/testextract.R | 22 ffbase-0.12.3/ffbase/tests/testthat/testffappend.R | 196 ++--- ffbase-0.12.3/ffbase/tests/testthat/testffdfplyr.R | 56 - ffbase-0.12.3/ffbase/tests/testthat/testffifelse.R | 72 +- ffbase-0.12.3/ffbase/tests/testthat/testffmatch.R | 102 +- ffbase-0.12.3/ffbase/tests/testthat/testffranfrom.R | 26 ffbase-0.12.3/ffbase/tests/testthat/testffwhich.R | 74 +- ffbase-0.12.3/ffbase/tests/testthat/testikey.R | 44 - ffbase-0.12.3/ffbase/tests/testthat/testisna.R | 64 - ffbase-0.12.3/ffbase/tests/testthat/testlaf.R | 110 +-- ffbase-0.12.3/ffbase/tests/testthat/testmean.ff.R | 16 ffbase-0.12.3/ffbase/tests/testthat/testmerge.R | 180 ++--- ffbase-0.12.3/ffbase/tests/testthat/testmin.ff.R | 78 +- ffbase-0.12.3/ffbase/tests/testthat/testrange_ff.R | 28 ffbase-0.12.3/ffbase/tests/testthat/testrisplit.R | 58 - ffbase-0.12.3/ffbase/tests/testthat/testrle_ff.R | 46 - ffbase-0.12.3/ffbase/tests/testthat/testsave_ffdf.R | 20 ffbase-0.12.3/ffbase/tests/testthat/testseq.R | 108 +-- ffbase-0.12.3/ffbase/tests/testthat/testsops.R | 640 +++++++++--------- ffbase-0.12.3/ffbase/tests/testthat/testsubset.R | 102 +- ffbase-0.12.3/ffbase/tests/testthat/testsum_ff.R | 30 ffbase-0.12.3/ffbase/tests/testthat/testtable_ff.R | 106 +- ffbase-0.12.3/ffbase/tests/testthat/testtabulate_ff.R | 26 ffbase-0.12.3/ffbase/tests/testthat/testtransform.R | 30 ffbase-0.12.3/ffbase/tests/testthat/testunique.R | 48 - ffbase-0.12.3/ffbase/tests/testthat/testwith.R | 102 +- ffbase-0.12.3/ffbase/tests/testthat/testwithin.R | 30 163 files changed, 8468 insertions(+), 8367 deletions(-)
Title: Chunkwise Text-File Processing for 'dplyr'
Description: Text data can be processed chunkwise using 'dplyr' commands. These
are recorded and executed per data chunk, so large files can be processed with
limited memory using the 'LaF' package.
Author: Edwin de Jonge
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between chunked versions 0.1.1 dated 2015-10-12 and 0.2.0 dated 2016-03-22
DESCRIPTION | 14 +- MD5 | 56 ++++---- NAMESPACE | 77 +++++------ NEWS.md |only R/chunkwise.R | 266 +++++++++++++++++++------------------- R/head.R | 24 +-- R/insert_chunk_into.R | 104 +++++++------- R/pkg.R | 96 ++++++------- R/print.R | 28 ++-- R/read.R | 154 +++++++++++----------- R/unsupported.R | 62 ++++---- R/verbs.R | 225 +++++++++++++++++--------------- R/write.R | 262 ++++++++++++++++++------------------- README.md | 264 +++++++++++++++++++------------------ man/chunked-package.Rd | 110 +++++++-------- man/insert_chunkwise_into.Rd | 56 ++++---- man/read_chunks.Rd | 150 +++++++++++---------- man/read_chunkwise.Rd | 62 ++++---- man/write_chunkwise.Rd | 62 ++++---- man/write_csv.Rd | 136 ++++++++++--------- tests/testthat.R | 8 - tests/testthat/test-head.R | 21 +-- tests/testthat/test-insert-into.R | 46 +++--- tests/testthat/test-print.R |only tests/testthat/test-read.R | 72 +++++----- tests/testthat/test-tbl-chunk.R | 34 ++-- tests/testthat/test-unsupported.R | 60 ++++---- tests/testthat/test-verbs.R | 204 ++++++++++++++++------------- tests/testthat/test-write.R | 64 ++++----- tests/testthat/util.R | 44 +++--- 30 files changed, 1423 insertions(+), 1338 deletions(-)
Title: Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
Description: Functions for estimating structural equation models using model-
implied instrumental variables.
Author: Zachary Fisher, Ken Bollen, Kathleen Gates, and Mikko Rönkkö.
Maintainer: Zachary Fisher <fish.zachary@gmail.com>
Diff between MIIVsem versions 0.4.6 dated 2016-03-06 and 0.4.7 dated 2016-03-22
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- R/miive.R | 7 ++++--- R/miivs.R | 20 ++++++++++++++++++-- 4 files changed, 29 insertions(+), 11 deletions(-)
Title: EM Algorithms for Estimating Item Response Theory Models
Description: Various Expectation-Maximization (EM) algorithms are implemented for item response theory
(IRT) models. The current implementation includes IRT models for binary and ordinal
responses, along with dynamic and hierarchical IRT models with binary responses. The
latter two models are derived and implemented using variational EM. Subsequent edits
also include variational network and text scaling models.
Author: Kosuke Imai <kimai@princeton.edu>, James Lo <jameslo@princeton.edu>, Jonathan Olmsted <jpolmsted@gmail.com>
Maintainer: James Lo <jameslo@princeton.edu>
Diff between emIRT versions 0.0.5 dated 2015-03-01 and 0.0.6 dated 2016-03-22
ChangeLog |only DESCRIPTION | 13 +-- MD5 | 67 +++++++++++++++--- NAMESPACE | 7 + R/binIRT.R | 120 +++++++++++++++++++++++++++++++-- R/bootstrap.R |only R/getStarts.R | 100 +++++++++++++++++++++++++++ R/makePriors.R | 29 +++++++ R/networkIRT.R |only R/poisIRT.R |only data/datalist | 2 data/manifesto.rda |only data/ustweet.rda |only man/binIRT.Rd | 74 +++++++++++++++++--- man/boot_emIRT.Rd |only man/manifesto.Rd |only man/networkIRT.Rd |only man/ordIRT.Rd | 2 man/poisIRT.Rd |only man/ustweet.Rd |only src/checkConv.cpp | 58 +++++++++++++++ src/checkConv.h | 15 ++++ src/checkConv_poisIRT.cpp |only src/checkConv_poisIRT.h |only src/endorseIRT_estimate.cpp |only src/estimate_endorseIRT.cpp |only src/estimate_endorseIRT.h |only src/estimate_poisIRT.cpp |only src/estimate_poisIRT.h |only src/getEalpha_endorseIRT.cpp |only src/getEalpha_endorseIRT.h |only src/getEalpha_poisIRT.cpp |only src/getEalpha_poisIRT.h |only src/getEbeta_endorseIRT.cpp |only src/getEbeta_endorseIRT.h |only src/getEbeta_poisIRT.cpp |only src/getEbeta_poisIRT.h |only src/getEgamma_endorseIRT.cpp |only src/getEgamma_endorseIRT.h |only src/getEpsi_poisIRT.cpp |only src/getEpsi_poisIRT.h |only src/getEtheta_endorseIRT.cpp |only src/getEtheta_endorseIRT.h |only src/getEw_endorseIRT.cpp |only src/getEw_endorseIRT.h |only src/getEx_poisIRT.cpp |only src/getEx_poisIRT.h |only src/getExi_poisIRT.cpp |only src/getExi_poisIRT.h |only src/getEystar_endorseIRT.cpp |only src/getEystar_endorseIRT.h |only src/getVbeta_poisIRT.cpp |only src/getVbeta_poisIRT.h |only src/getVx_poisIRT.cpp |only src/getVx_poisIRT.h |only src/poisIRT_estimate.cpp |only src/updateHigherMoments_endorseIRT.cpp |only src/updateHigherMoments_endorseIRT.h |only 58 files changed, 453 insertions(+), 34 deletions(-)
Title: Functions for Elementary Bayesian Inference
Description: A set of R functions and data sets for the book Introduction to
Bayesian Statistics, Bolstad, W.M. (2007), John Wiley & Sons ISBN 0-471-27020-2.
Author: James Curran <j.curran@auckland.ac.nz>
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between Bolstad versions 0.2-30 dated 2016-03-17 and 0.2-32 dated 2016-03-22
DESCRIPTION | 8 MD5 | 18 - NAMESPACE | 49 --- R/as.data.frame.Bolstad.R | 2 R/bayes.lin.reg.r | 743 +++++++++++++++++++++++----------------------- R/nvaricp.r | 440 +++++++++++++-------------- R/quantile.Bolstad.R | 1 R/sd.R | 5 R/var.R | 1 man/nvaricp.Rd | 41 -- 10 files changed, 617 insertions(+), 691 deletions(-)
Title: Simultaneous Variables Clustering and Regression
Description: Implements an empirical Bayes approach for simultaneous variable clustering and regression. This version also (re)implements in C++ an R script proposed by Howard Bondell that fits the Pairwise Absolute Clustering and Sparsity (PACS) methodology (see Sharma et al (2013) <DOI:10.1080/15533174.2012.707849>).
Author: Loic Yengo, Mickael Canouil
Maintainer: Loic Yengo <loic.yengo@gmail.com>
Diff between clere versions 1.1.3 dated 2016-03-09 and 1.1.4 dated 2016-03-22
clere-1.1.3/clere/man/is.clere.Rd |only clere-1.1.4/clere/DESCRIPTION | 8 clere-1.1.4/clere/MD5 | 27 +-- clere-1.1.4/clere/NAMESPACE | 3 clere-1.1.4/clere/R/Clere.R | 17 -- clere-1.1.4/clere/R/fitClere.R | 226 ++++++++++++++-------------- clere-1.1.4/clere/build/vignette.rds |binary clere-1.1.4/clere/data/algoComp.RData |binary clere-1.1.4/clere/data/numExpRealData.RData |binary clere-1.1.4/clere/data/numExpSimData.RData |binary clere-1.1.4/clere/inst/doc/clere.Rnw | 24 +- clere-1.1.4/clere/inst/doc/clere.pdf |binary clere-1.1.4/clere/man/clere-package.Rd | 4 clere-1.1.4/clere/src/Model.cpp | 6 clere-1.1.4/clere/vignettes/clere.Rnw | 24 +- 15 files changed, 164 insertions(+), 175 deletions(-)
Title: SQL Server R Database Interface (DBI) and dplyr SQL Backend
Description: Utilises The jTDS Project's JDBC 3.0 SQL Server
driver to extend the RJDBC classes and DBI methods. It defines a
SQLServerDriver, SQLServerConnection & SQLServerRsult S4 classes as
extensions of the RJDBC equivalent classes with most DBI
methods being thin extensions of the methods defined by RJDBC classes.
However, the dbConnect interface is more convenient, and the data reading
and writing capabilities found in RJDBC's fetch and dbWriteTable methods
have been refined. The package also implements a SQL backend to the dplyr
package.
Author: Imanuel Costigan [aut, cre],
The jTDS Project (for MSSQL Server driver) [aut],
Simon Urbanek [ctb],
Hadley Wickham [ctb],
Romain Francois [ctb],
RStudio [cph],
The Legion Of The Bouncy Castle [cph, ctb]
Maintainer: Imanuel Costigan <i.costigan@me.com>
Diff between RSQLServer versions 0.1.1 dated 2014-10-10 and 0.2.0 dated 2016-03-22
RSQLServer-0.1.1/RSQLServer/NEWS |only RSQLServer-0.1.1/RSQLServer/R/DBConnection.R |only RSQLServer-0.1.1/RSQLServer/R/DBDriver.R |only RSQLServer-0.1.1/RSQLServer/R/DBResult.R |only RSQLServer-0.1.1/RSQLServer/inst/java/jtds-1.3.1.jar |only RSQLServer-0.1.1/RSQLServer/java/jTDS1.3.1 |only RSQLServer-0.1.1/RSQLServer/man/dbConnect-SQLServerDriver-method.Rd |only RSQLServer-0.1.1/RSQLServer/man/dbGetInfo-SQLServerConnection-method.Rd |only RSQLServer-0.1.1/RSQLServer/man/dbGetInfo-SQLServerDriver-method.Rd |only RSQLServer-0.1.1/RSQLServer/man/dbIsValid-SQLServerConnection-method.Rd |only RSQLServer-0.1.1/RSQLServer/man/dbIsValid-SQLServerResult-method.Rd |only RSQLServer-0.1.1/RSQLServer/man/dbListConnections-SQLServerDriver-method.Rd |only RSQLServer-0.1.1/RSQLServer/man/dbSendQuery-SQLServerConnection-character-method.Rd |only RSQLServer-0.1.1/RSQLServer/man/dbUnloadDriver-SQLServerDriver-method.Rd |only RSQLServer-0.2.0/RSQLServer/DESCRIPTION | 65 ++- RSQLServer-0.2.0/RSQLServer/MD5 | 203 +++++----- RSQLServer-0.2.0/RSQLServer/NAMESPACE | 91 ++++ RSQLServer-0.2.0/RSQLServer/NEWS.md |only RSQLServer-0.2.0/RSQLServer/R/RSQLServer.R | 19 RSQLServer-0.2.0/RSQLServer/R/Utils.R | 143 +++++-- RSQLServer-0.2.0/RSQLServer/R/dbi-classes.R |only RSQLServer-0.2.0/RSQLServer/R/dbi-methods.R |only RSQLServer-0.2.0/RSQLServer/R/dbi-shims.R |only RSQLServer-0.2.0/RSQLServer/R/dplyr-imports.R |only RSQLServer-0.2.0/RSQLServer/R/dplyr.R |only RSQLServer-0.2.0/RSQLServer/R/jdbc-methods.R |only RSQLServer-0.2.0/RSQLServer/R/onLoad.R | 6 RSQLServer-0.2.0/RSQLServer/R/sql-backends.R |only RSQLServer-0.2.0/RSQLServer/R/sql-methods.R |only RSQLServer-0.2.0/RSQLServer/README.md | 97 ++++ RSQLServer-0.2.0/RSQLServer/inst/extdata |only RSQLServer-0.2.0/RSQLServer/inst/java/jtds-1.2.8.jar |only RSQLServer-0.2.0/RSQLServer/java/jTDS1.2.8 |only RSQLServer-0.2.0/RSQLServer/man/RSQLServer.Rd | 19 RSQLServer-0.2.0/RSQLServer/man/SQLServer.Rd |only RSQLServer-0.2.0/RSQLServer/man/SQLServerConnection-class.Rd | 49 +- RSQLServer-0.2.0/RSQLServer/man/SQLServerDriver-class.Rd | 45 -- RSQLServer-0.2.0/RSQLServer/man/SQLServerResult-class.Rd | 35 + RSQLServer-0.2.0/RSQLServer/man/get_server_details.Rd |only RSQLServer-0.2.0/RSQLServer/man/have_test_server.Rd |only RSQLServer-0.2.0/RSQLServer/man/setops.Rd |only RSQLServer-0.2.0/RSQLServer/man/src_sqlserver.Rd |only RSQLServer-0.2.0/RSQLServer/tests |only 43 files changed, 530 insertions(+), 242 deletions(-)
Title: Analyse Text Documents Using Ecological Tools
Description: A set of functions and a graphical user interface
to analyse and compare texts, using classical text mining
functions, as well as those from theoretical ecology.
Author: Rebaudo Francois (IRD, UMR EGCE, Univ.ParisSud-CNRS-IRD-
Univ.ParisSaclay)
Maintainer: Rebaudo Francois <francois.rebaudo@ird.fr>
Diff between inpdfr versions 0.1.1 dated 2016-02-24 and 0.1.2 dated 2016-03-22
DESCRIPTION | 10 MD5 | 84 ++-- NEWS.md | 10 R/inpdfr_ALL_quickFunctions.R | 109 ++++- R/inpdfr_ANA_ECO_entropart.R | 126 ++++-- R/inpdfr_ANA_ECO_metacom.R | 67 ++- R/inpdfr_ANA_barplot.R | 102 +++-- R/inpdfr_ANA_cluster.R | 116 ++++-- R/inpdfr_ANA_correspAnalysis.R | 57 ++- R/inpdfr_ANA_freqWordCor.R | 219 +++++++---- R/inpdfr_ANA_hist.R | 42 +- R/inpdfr_ANA_occur.R | 39 +- R/inpdfr_ANA_wordcloud.R | 55 +- R/inpdfr_PRO_extractTxt.R | 68 ++- R/inpdfr_PRO_manageFiles.R | 22 - R/inpdfr_PRO_processDF.R | 62 ++- R/inpdfr_PRO_processTxt.R | 50 +- R/inpdfr_PRO_stopwords.R | 46 +- R/inpdfr_RGtk2_GUI.R | 771 +++++++++++++++++++++-------------------- inst/doc/inpdfr-vignette.html | 4 man/doCA.Rd | 24 + man/doCluster.Rd | 23 + man/doKmeansClust.Rd | 23 + man/doMetacomEntropart.Rd | 25 + man/doMetacomMetacom.Rd | 24 + man/excludeStopWords.Rd | 2 man/getAllAnalysis.Rd | 35 + man/getListFiles.Rd | 2 man/getMostFreqWord.Rd | 24 + man/getMostFreqWordCor.Rd | 24 + man/getPDF.Rd | 2 man/getSummaryStatsBARPLOT.Rd | 26 + man/getSummaryStatsHISTO.Rd | 25 + man/getSummaryStatsOCCUR.Rd | 7 man/getTXT.Rd | 19 - man/getXFreqWord.Rd | 20 - man/getwordOccuDF.Rd | 23 + man/makeWordcloud.Rd | 9 man/mergeWordFreq.Rd | 20 - man/postProcTxt.Rd | 15 man/preProcTxt.Rd | 13 man/quitSpaceFromChars.Rd | 2 man/truncNumWords.Rd | 2 43 files changed, 1559 insertions(+), 889 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Provides new statistics to locate and tag peaks and valleys in 2D
plots, a statistics to add a label with the equation of a polynomial fitted
with lm(), or R^2 or adjusted R^2 or information criteria for any model
fitted with function lm(). Provides a function for flexibly converting time
series to data frames suitable for plotting with ggplot(). In addition
provides two statistics and two geometry useful for diagnosing what data are
passed to compute_group() and compute_panel() functions and to geometries.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.2.6 dated 2016-02-25 and 0.2.7 dated 2016-03-22
DESCRIPTION | 22 +- MD5 | 39 ++-- NAMESPACE | 4 NEWS | 16 + R/geom-debug.R |only R/ggpmisc.R | 21 ++ R/stat-debug-group.R | 51 +++-- R/stat-debug-panel.R | 23 +- R/stat-poly-eq.R | 41 ++++ README.md | 14 + build/vignette.rds |binary inst/doc/examples.R | 146 ++++++++++++++++- inst/doc/examples.Rmd | 216 +++++++++++++++++++++++-- inst/doc/examples.html | 411 ++++++++++++++++++++++++++++++++++++++++++++---- man/geom_debug.Rd |only man/geom_null.Rd |only man/ggpmisc-ggproto.Rd | 6 man/ggpmisc-package.Rd | 35 ++-- man/stat_debug_group.Rd | 25 +- man/stat_debug_panel.Rd | 8 man/stat_poly_eq.Rd | 11 - vignettes/examples.Rmd | 216 +++++++++++++++++++++++-- 22 files changed, 1144 insertions(+), 161 deletions(-)