Title: Social Relation Model (SRM) Analyses for Single or Multiple
Groups
Description: Social Relation Model (SRM) analyses for single or multiple
round-robin groups are performed. These analyses are either based on one
manifest variable, one latent construct measured by two manifest variables,
two manifest variables and their bivariate relations, or two latent
constructs each measured by two manifest variables. Within-group t-tests
for variance components and covariances are provided for single groups.
For multiple groups two types of significance tests are provided:
between-groups t-tests (as in SOREMO) and enhanced standard errors based on
Lashley and Bond (1997). Handling for missing values is provided.
Author: F. D. Schönbrodt, M. D. Back, S. C. Schmukle
Maintainer: Felix Schönbrodt <felix.schoenbrodt@psy.lmu.de>
Diff between TripleR versions 1.4.1 dated 2015-04-30 and 1.5.0 dated 2016-03-24
DESCRIPTION | 16 MD5 | 25 - NAMESPACE | 17 NEWS | 12 R/00-Skinning.R |only R/LashleyBond.R |only R/RR.r | 834 +++++++++++++------------------------------------ R/helpers.R |only R/imports.R |only R/impute.R |only R/plots.R | 3 R/print.RR.R |only R/weighted.t.test.R |only inst/CITATION | 6 inst/doc/TripleR.pdf |binary man/RR.Rd | 14 man/TripleR-package.Rd | 5 17 files changed, 305 insertions(+), 627 deletions(-)
Title: Learn R, in R
Description: Use the R console as an interactive learning
environment. Users receive immediate feedback as they are guided through
self-paced lessons in data science and R programming.
Author: Sean Kross [aut, cre],
Nick Carchedi [aut],
Bill Bauer [aut],
Gina Grdina [aut],
Filip Schouwenaars [ctb],
Wush Wu [ctb]
Maintainer: Sean Kross <sean@seankross.com>
Diff between swirl versions 2.2.21 dated 2015-01-04 and 2.4.0 dated 2016-03-24
DESCRIPTION | 36 +++-- LICENSE |only MD5 | 118 ++++++++++-------- NAMESPACE | 11 + NEWS.md |only R/actions.R |only R/answerTests2.R | 8 - R/args_specification.R |only R/courseraCheck.R | 66 +++++----- R/install_course.R | 224 ++++++++++++++++++++++++++---------- R/instructionSet.R | 47 ++++--- R/languages.R |only R/log.R |only R/menu.R | 131 ++++++++++++++------- R/options.R |only R/parse_content.R | 16 ++ R/phrases.R | 74 +++++------ R/post.R |only R/progress.R | 12 + R/rmatch_calls.R | 18 +- R/swirl.R | 161 +++++++++---------------- R/sysdata.rda |only R/utilities.R | 18 +- R/zzz.R | 14 +- README.md | 3 inst/Courses/suggested_courses.yaml | 13 +- inst/test |only man/AnswerTests.Rd | 56 ++++----- man/InstallCourses.Rd | 29 ++-- man/any_of_exprs.Rd | 18 +- man/bye.Rd | 2 man/delete_progress.Rd | 6 man/email_admin.Rd | 2 man/expr_creates_var.Rd | 16 +- man/expr_identical_to.Rd | 16 +- man/expr_is_a.Rd | 18 +- man/expr_uses_func.Rd | 16 +- man/func_of_newvar_equals.Rd | 16 +- man/info.Rd | 24 --- man/install_course.Rd |only man/install_course_directory.Rd | 21 +-- man/install_course_dropbox.Rd | 21 +-- man/install_course_github.Rd | 21 +-- man/install_course_google_drive.Rd | 21 +-- man/install_course_url.Rd | 21 +-- man/install_course_zip.Rd | 21 +-- man/install_from_swirl.Rd | 27 ++-- man/is_robust_match.Rd | 4 man/main.Rd | 2 man/nxt.Rd | 2 man/omnitest.Rd | 30 ++-- man/play.Rd | 2 man/reset.Rd | 2 man/restart.Rd |only man/rmatch_calls.Rd | 32 ++--- man/select_language.Rd |only man/skip.Rd | 2 man/submit.Rd | 2 man/swirl.Rd | 10 - man/swirl_options.Rd |only man/uninstall_all_courses.Rd | 28 ++-- man/uninstall_course.Rd | 21 +-- man/val_has_length.Rd | 18 +- man/val_matches.Rd | 18 +- man/var_is_a.Rd | 16 +- man/zip_course.Rd | 23 +-- tests/testthat/test-encoding.R |only tests/testthat/test-uses_func.R |only 68 files changed, 864 insertions(+), 690 deletions(-)
Title: Stubbing Framework for R
Description: Create stubs of functions for use while testing.
Author: Sainath Adapa [aut, cre],
Nitin Madasu [aut]
Maintainer: Sainath Adapa <adapasainath@gmail.com>
Diff between stubthat versions 0.1.0 dated 2015-12-13 and 1.0.0 dated 2016-03-24
stubthat-0.1.0/stubthat/R/notin.R |only stubthat-0.1.0/stubthat/README.md |only stubthat-0.1.0/stubthat/inst/doc/stubtthat.R |only stubthat-0.1.0/stubthat/inst/doc/stubtthat.Rmd |only stubthat-0.1.0/stubthat/inst/doc/stubtthat.html |only stubthat-0.1.0/stubthat/vignettes/stubtthat.Rmd |only stubthat-1.0.0/stubthat/DESCRIPTION | 6 stubthat-1.0.0/stubthat/MD5 | 33 stubthat-1.0.0/stubthat/NEWS.md |only stubthat-1.0.0/stubthat/R/stub.R | 418 ++++------ stubthat-1.0.0/stubthat/build/vignette.rds |binary stubthat-1.0.0/stubthat/inst/doc/stubthat.R |only stubthat-1.0.0/stubthat/inst/doc/stubthat.Rmd |only stubthat-1.0.0/stubthat/inst/doc/stubthat.html |only stubthat-1.0.0/stubthat/man/stub.Rd | 2 stubthat-1.0.0/stubthat/tests/testthat/test-called-times.r |only stubthat-1.0.0/stubthat/tests/testthat/test-function-as-arg.R |only stubthat-1.0.0/stubthat/tests/testthat/test-on-call-expects.r |only stubthat-1.0.0/stubthat/tests/testthat/test-on-call-strictly-expects.r |only stubthat-1.0.0/stubthat/tests/testthat/test-on-call.r | 62 - stubthat-1.0.0/stubthat/tests/testthat/test-simple-cases.r | 72 + stubthat-1.0.0/stubthat/tests/testthat/test-with-args.r | 33 stubthat-1.0.0/stubthat/tests/testthat/test-with-exact-args.r | 23 stubthat-1.0.0/stubthat/tests/testthat/test-with-mock.r | 54 - stubthat-1.0.0/stubthat/vignettes/stubthat.Rmd |only 25 files changed, 366 insertions(+), 337 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Mixed model equation solver allowing the specification of variance covariance structures of random effects and residual structures. ML/REML estimates are obtained using the Average Information and/or Expectation-Maximization algorithms. Designed for genomic prediction and genome wide association studies (GWAS) to include additive, dominant and epistatic relationship structures or other covariance structures in R.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <covarrubiasp@wisc.edu>
Diff between sommer versions 1.3 dated 2016-03-09 and 1.4 dated 2016-03-24
CHANGELOG | 12 + DESCRIPTION | 14 - MD5 | 52 +++-- NAMESPACE | 11 - R/AI.R | 441 ++++++++++++++++++++++++++++-------------------- R/AI2.R | 2 R/AI3.R | 2 R/EM.R | 270 ++++++++++++++++++----------- R/EM2.R |only R/atcg1234.R | 40 ++++ R/bag.R | 2 R/big.peaks.col.R |only R/brewer.pal.R |only R/map.plot2.R | 61 ++++++ R/mmer.R | 84 ++++++++- R/mmer2.R | 8 data/Technow_data.RData |only data/datalist | 1 inst/CITATION | 4 man/AI.Rd | 4 man/CPdata.Rd | 2 man/EM.Rd | 3 man/EM2.Rd |only man/PolyData.Rd | 4 man/Technow_data.Rd |only man/atcg1234.Rd | 3 man/big.peaks.col.Rd |only man/brewer.pal.Rd |only man/mmer.Rd | 79 ++++++-- man/mmer2.Rd | 85 +++++++-- man/sommer-package.Rd | 62 ++++-- 31 files changed, 851 insertions(+), 395 deletions(-)
Title: Six Sigma Tools for Quality Control and Improvement
Description: Functions and utilities to perform
Statistical Analyses in the Six Sigma way.
Through the DMAIC cycle (Define, Measure, Analyze, Improve, Control),
you can manage several Quality Management studies:
Gage R&R, Capability Analysis, Control Charts, Loss Function Analysis,
etc. Data frames used in the books "Six Sigma with R" (Springer, 2012)
and "Quality Control with R" (Springer, 2015)
are also included in the package.
Author: Emilio L. Cano, Javier M. Moguerza, Mariano Prieto and Andrés Redchuk
Maintainer: Emilio L. Cano <emilio.lopez@urjc.es>
Diff between SixSigma versions 0.9-2 dated 2016-02-05 and 0.9-3 dated 2016-03-24
DESCRIPTION | 8 MD5 | 20 - NEWS | 9 R/SixSigma-package.R | 2 R/ss.ci.R | 305 ++++++++++--------- R/ss.rr.R | 550 ++++++++++++++++++++++-------------- build/vignette.rds |binary inst/doc/HelicopterInstructions.pdf |binary inst/doc/ShewhartConstants.pdf |binary man/SixSigma.Rd | 2 man/ss.rr.Rd | 47 ++- 11 files changed, 560 insertions(+), 383 deletions(-)
Title: A Tool to Associate FASTA Sequences and Features
Description: Provides user friendly methods for the identification of sequence patterns that are statistically significantly associated with a property of the sequence. For instance, SeqFeatR allows to identify viral immune escape mutations for hosts of given HLA types. The underlying statistical method is Fisher's exact test, with appropriate corrections for multiple testing, or Bayes. Patterns may be point mutations or n-tuple of mutations. SeqFeatR offers several ways to visualize the results of the statistical analyses.
Author: Bettina Budeus
Maintainer: Bettina Budeus <bettina.budeus@stud.uni-due.de>
Diff between SeqFeatR versions 0.2.0 dated 2015-08-20 and 0.2.2 dated 2016-03-24
DESCRIPTION | 10 +- MD5 | 20 ++-- NAMESPACE | 20 ++-- NEWS | 14 +++ R/SeqFeatR_GUI.R | 174 +++++++++++++++++++++++++++++------------ R/assocpoint.R | 75 +++++------------ R/smallmanhattan.R |only build/vignette.rds |binary inst/doc/SeqFeatR_tutorial.pdf |binary inst/extdata/config.cfg | 3 man/assocpoint.Rd | 15 --- man/smallmanhattan.Rd |only 12 files changed, 199 insertions(+), 132 deletions(-)
Title: JavaScript Charts API Tool
Description: API for using 'AmCharts' Library. Based on the 'htmlwidgets'
package, it provides a global architecture to generate 'JavaScript' source
code for charts. Most of classes in the library have their equivalent in R
with S4 classes; for those classes, not all properties have been referenced
but can easily be added in the constructors. Complex properties (e.g.
'JavaScript' object) can be passed as named list. See examples at <http://
datastorm-open.github.io/introduction_ramcharts/>. and <http://www.amcharts.com/> for
more information about the library. The package includes the free version of
'AmCharts' Library. Its only limitation is that a small link to the web site
will be displayed in your charts. If you enjoy this library, do not hesitate
to refer to this page <http://www.amcharts.com/online-store/> to purchase a
licence, and thus support its creators and get a period of Priority Support.
See also <http://www.amcharts.com/about/> for more information about
'AmCharts' company.
Author: Jeffery Petit [aut, cre],
Antanas Marcelionis [aut, cph] ('AmCharts' library in th directory
htmlwidgets/lib/amcharts, refer to http://www.amcharts.com/),
Benoit Thieurmel [aut, ctb],
Elena Salette [aut, ctb],
Titouan Robert [aut, ctb]
Maintainer: Jeffery Petit <jeffery.petit@datastorm.fr>
Diff between rAmCharts versions 1.1.2 dated 2015-10-19 and 2.0.0 dated 2016-03-24
rAmCharts-1.1.2/rAmCharts/R/AmBalloon.R |only rAmCharts-1.1.2/rAmCharts/R/AmChart.R |only rAmCharts-1.1.2/rAmCharts/R/AmChart_constructors.R |only rAmCharts-1.1.2/rAmCharts/R/AmChart_setters.R |only rAmCharts-1.1.2/rAmCharts/R/AmChart_shinyUtils.R |only rAmCharts-1.1.2/rAmCharts/R/AmCharts_plot.R |only rAmCharts-1.1.2/rAmCharts/R/AmGraph.R |only rAmCharts-1.1.2/rAmCharts/R/AmLegend.R |only rAmCharts-1.1.2/rAmCharts/R/AmObject.R |only rAmCharts-1.1.2/rAmCharts/R/AmStockChart.R |only rAmCharts-1.1.2/rAmCharts/R/AmStockChart_setters.R |only rAmCharts-1.1.2/rAmCharts/R/AxisBase.R |only rAmCharts-1.1.2/rAmCharts/R/AxisBase_setters.R |only rAmCharts-1.1.2/rAmCharts/R/CategoryAxis.R |only rAmCharts-1.1.2/rAmCharts/R/ChartCursor.R |only rAmCharts-1.1.2/rAmCharts/R/ChartCursor_setters.R |only rAmCharts-1.1.2/rAmCharts/R/ChartScrollbar.R |only rAmCharts-1.1.2/rAmCharts/R/ChartScrollbar_setters.R |only rAmCharts-1.1.2/rAmCharts/R/DataSet.R |only rAmCharts-1.1.2/rAmCharts/R/DataSetSelector.R |only rAmCharts-1.1.2/rAmCharts/R/DataSet_setters.R |only rAmCharts-1.1.2/rAmCharts/R/GaugeArrow.R |only rAmCharts-1.1.2/rAmCharts/R/GaugeArrow_setters.R |only rAmCharts-1.1.2/rAmCharts/R/GaugeAxis.R |only rAmCharts-1.1.2/rAmCharts/R/GaugeAxis_setters.R |only rAmCharts-1.1.2/rAmCharts/R/GaugeBand.R |only rAmCharts-1.1.2/rAmCharts/R/Guide.R |only rAmCharts-1.1.2/rAmCharts/R/Guide_setters.R |only rAmCharts-1.1.2/rAmCharts/R/Label.R |only rAmCharts-1.1.2/rAmCharts/R/PeriodSelector.R |only rAmCharts-1.1.2/rAmCharts/R/StockEvent.R |only rAmCharts-1.1.2/rAmCharts/R/StockEvent_setters.R |only rAmCharts-1.1.2/rAmCharts/R/StockPanel.R |only rAmCharts-1.1.2/rAmCharts/R/StockPanel_setters.R |only rAmCharts-1.1.2/rAmCharts/R/Title.R |only rAmCharts-1.1.2/rAmCharts/R/TrendLine.R |only rAmCharts-1.1.2/rAmCharts/R/TrendLine_setters.R |only rAmCharts-1.1.2/rAmCharts/R/ValueAxis.R |only rAmCharts-1.1.2/rAmCharts/R/amBoxplot.R |only rAmCharts-1.1.2/rAmCharts/R/amHist.R |only rAmCharts-1.1.2/rAmCharts/R/basicClassUnions.R |only rAmCharts-1.1.2/rAmCharts/R/classUnion.R |only rAmCharts-1.1.2/rAmCharts/R/data.R |only rAmCharts-1.1.2/rAmCharts/R/sharedGenerics.R |only rAmCharts-1.1.2/rAmCharts/R/shinyExamples.R |only rAmCharts-1.1.2/rAmCharts/R/startupMessage.R |only rAmCharts-1.1.2/rAmCharts/inst/htmlwidgets/lib/images/lens_white.svg |only rAmCharts-1.1.2/rAmCharts/inst/htmlwidgets/lib/plugins/export/README.md |only rAmCharts-1.1.2/rAmCharts/inst/htmlwidgets/lib/plugins/export/libs/xlsx/xlsx.min.map |only rAmCharts-1.1.2/rAmCharts/inst/htmlwidgets/lib/plugins/responsive/readme.md |only rAmCharts-1.1.2/rAmCharts/inst/htmlwidgets/lib/plugins/responsive/responsive.min.js.map |only rAmCharts-1.1.2/rAmCharts/inst/htmlwidgets/style.css |only rAmCharts-1.1.2/rAmCharts/man/initialize-AmBalloon.Rd |only rAmCharts-1.1.2/rAmCharts/man/initialize-AmGraph.Rd |only rAmCharts-1.1.2/rAmCharts/man/initialize-AmStockChart.Rd |only rAmCharts-1.1.2/rAmCharts/man/initialize-DataSet.Rd |only rAmCharts-1.1.2/rAmCharts/man/initialize-DataSetSelector.Rd |only rAmCharts-1.1.2/rAmCharts/man/initialize-GaugeArrow.Rd |only rAmCharts-1.1.2/rAmCharts/man/initialize-GaugeAxis.Rd |only rAmCharts-1.1.2/rAmCharts/man/initialize-GaugeBand.Rd |only rAmCharts-1.1.2/rAmCharts/man/initialize-Label.Rd |only rAmCharts-1.1.2/rAmCharts/man/initialize-Title.Rd |only rAmCharts-1.1.2/rAmCharts/man/initialize-TrendLine.Rd |only rAmCharts-1.1.2/rAmCharts/man/listProperties-AmChart-method.Rd |only rAmCharts-1.1.2/rAmCharts/man/runShinyExamples.Rd |only rAmCharts-1.1.2/rAmCharts/man/show-AmStockChart-method.Rd |only rAmCharts-1.1.2/rAmCharts/man/utils-methods.Rd |only rAmCharts-1.1.2/rAmCharts/tests/testthat/test_AmChart_setters.R |only rAmCharts-2.0.0/rAmCharts/DESCRIPTION | 75 - rAmCharts-2.0.0/rAmCharts/MD5 | 416 +++-- rAmCharts-2.0.0/rAmCharts/NAMESPACE | 46 rAmCharts-2.0.0/rAmCharts/R/base_data.R |only rAmCharts-2.0.0/rAmCharts/R/base_shiny.R |only rAmCharts-2.0.0/rAmCharts/R/base_startupMessage.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amBarplot.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amBoxplot.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amBullet.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amCandlestick.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amFloatingBar.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amFunnel.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amGauge.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amHist.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amMekko.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amOHLC.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amPie.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amPlot.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amRadar.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amWaterfall.R |only rAmCharts-2.0.0/rAmCharts/R/chart_amWind.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmBalloon.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmChart.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmChart_constructors.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmChart_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmChart_shinyUtils.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmCharts_plot.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmGraph.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmLegend.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmObject.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmStockChart.R |only rAmCharts-2.0.0/rAmCharts/R/class_AmStockChart_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_AxisBase.R |only rAmCharts-2.0.0/rAmCharts/R/class_AxisBase_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_CategoryAxis.R |only rAmCharts-2.0.0/rAmCharts/R/class_ChartCursor.R |only rAmCharts-2.0.0/rAmCharts/R/class_ChartCursor_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_ChartScrollbar.R |only rAmCharts-2.0.0/rAmCharts/R/class_ChartScrollbar_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_DataSet.R |only rAmCharts-2.0.0/rAmCharts/R/class_DataSetSelector.R |only rAmCharts-2.0.0/rAmCharts/R/class_DataSet_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_GaugeArrow.R |only rAmCharts-2.0.0/rAmCharts/R/class_GaugeArrow_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_GaugeAxis.R |only rAmCharts-2.0.0/rAmCharts/R/class_GaugeAxis_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_GaugeBand.R |only rAmCharts-2.0.0/rAmCharts/R/class_Guide.R |only rAmCharts-2.0.0/rAmCharts/R/class_Guide_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_Label.R |only rAmCharts-2.0.0/rAmCharts/R/class_PeriodSelector.R |only rAmCharts-2.0.0/rAmCharts/R/class_StockEvent.R |only rAmCharts-2.0.0/rAmCharts/R/class_StockEvent_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_StockPanel.R |only rAmCharts-2.0.0/rAmCharts/R/class_StockPanel_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_Title.R |only rAmCharts-2.0.0/rAmCharts/R/class_TrendLine.R |only rAmCharts-2.0.0/rAmCharts/R/class_TrendLine_setters.R |only rAmCharts-2.0.0/rAmCharts/R/class_ValueAxis.R |only rAmCharts-2.0.0/rAmCharts/R/tools_amOptions.R |only rAmCharts-2.0.0/rAmCharts/R/tools_amTests.R |only rAmCharts-2.0.0/rAmCharts/R/utils.R | 62 rAmCharts-2.0.0/rAmCharts/R/utils_basicClassUnions.R |only rAmCharts-2.0.0/rAmCharts/R/utils_classUnion.R |only rAmCharts-2.0.0/rAmCharts/R/utils_sharedGenerics.R |only rAmCharts-2.0.0/rAmCharts/data/data_AirPassengers.rda |only rAmCharts-2.0.0/rAmCharts/data/data_bar.rda |only rAmCharts-2.0.0/rAmCharts/data/data_candleStick1.rda |only rAmCharts-2.0.0/rAmCharts/data/data_candleStick2.rda |only rAmCharts-2.0.0/rAmCharts/data/data_fbar.rda |only rAmCharts-2.0.0/rAmCharts/data/data_funnel.rda |only rAmCharts-2.0.0/rAmCharts/data/data_gbar.rda |only rAmCharts-2.0.0/rAmCharts/data/data_gdp.rda |binary rAmCharts-2.0.0/rAmCharts/data/data_mekko.rda |only rAmCharts-2.0.0/rAmCharts/data/data_pie.rda |only rAmCharts-2.0.0/rAmCharts/data/data_radar.rda |only rAmCharts-2.0.0/rAmCharts/data/data_waterfall.rda |only rAmCharts-2.0.0/rAmCharts/data/data_wind.rda |only rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/amcharts.js | 694 ++++------ rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/amstock.js | 194 +- rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/funnel.js | 51 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/gantt.js | 2 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/gauge.js | 28 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/images/lensWhite.svg |only rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/pie.js | 39 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/plugins/export/export.min.js | 4 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/radar.js | 22 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/serial.js | 140 +- rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/style.css |only rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/themes/black.js | 2 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/themes/chalk.js | 2 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/themes/dark.js | 2 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/themes/light.js | 2 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/themes/patterns.js | 2 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/lib/xy.js | 59 rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/ramcharts_base.js | 88 - rAmCharts-2.0.0/rAmCharts/inst/htmlwidgets/ramcharts_base.yaml | 8 rAmCharts-2.0.0/rAmCharts/inst/shiny/server.R | 47 rAmCharts-2.0.0/rAmCharts/inst/shiny/src/Information |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/bar |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/bullet |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/candlestick |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/drilldown/drilldown_ui.R | 4 rAmCharts-2.0.0/rAmCharts/inst/shiny/src/funnel/amfunnel_server.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/funnel/amfunnel_ui.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/funnel/funnel_server.R | 128 - rAmCharts-2.0.0/rAmCharts/inst/shiny/src/funnel/funnel_ui.R | 91 + rAmCharts-2.0.0/rAmCharts/inst/shiny/src/gauge/amgauge_server.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/gauge/amgauge_ui.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/gauge/gauge_server.R | 44 rAmCharts-2.0.0/rAmCharts/inst/shiny/src/gauge/gauge_ui.R | 36 rAmCharts-2.0.0/rAmCharts/inst/shiny/src/lines |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/mekko |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/menu |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/pie/amPie_server.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/pie/amPie_ui.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/pie/pie_server.R | 103 - rAmCharts-2.0.0/rAmCharts/inst/shiny/src/pie/pie_ui.R | 218 ++- rAmCharts-2.0.0/rAmCharts/inst/shiny/src/radar/amRadar_server.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/radar/amRadar_ui.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/radar/radar_server.R | 104 - rAmCharts-2.0.0/rAmCharts/inst/shiny/src/radar/radar_ui.R | 83 + rAmCharts-2.0.0/rAmCharts/inst/shiny/src/serial/serial_server.R | 290 +++- rAmCharts-2.0.0/rAmCharts/inst/shiny/src/serial/serial_ui.R | 30 rAmCharts-2.0.0/rAmCharts/inst/shiny/src/stock/amstock_server.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/stock/amstock_ui.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/stock/stock_server.R | 252 ++- rAmCharts-2.0.0/rAmCharts/inst/shiny/src/stock/stock_ui.R | 60 rAmCharts-2.0.0/rAmCharts/inst/shiny/src/xy/amxy_server.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/xy/amxy_ui.R |only rAmCharts-2.0.0/rAmCharts/inst/shiny/src/xy/xy_server.R | 133 + rAmCharts-2.0.0/rAmCharts/inst/shiny/src/xy/xy_ui.R | 78 + rAmCharts-2.0.0/rAmCharts/inst/shiny/ui.R | 69 rAmCharts-2.0.0/rAmCharts/inst/shiny/www |only rAmCharts-2.0.0/rAmCharts/man/AmBalloon-class.Rd | 33 rAmCharts-2.0.0/rAmCharts/man/AmBalloon.Rd |only rAmCharts-2.0.0/rAmCharts/man/AmChart-class.Rd | 70 - rAmCharts-2.0.0/rAmCharts/man/AmGraph-class.Rd | 15 rAmCharts-2.0.0/rAmCharts/man/AmGraph.Rd |only rAmCharts-2.0.0/rAmCharts/man/AmLegend-class.Rd | 17 rAmCharts-2.0.0/rAmCharts/man/AmObject-class.Rd | 12 rAmCharts-2.0.0/rAmCharts/man/AmStockChart-class.Rd | 22 rAmCharts-2.0.0/rAmCharts/man/AmStockChart.Rd |only rAmCharts-2.0.0/rAmCharts/man/AxisBase-class.Rd | 17 rAmCharts-2.0.0/rAmCharts/man/CategoryAxis-class.Rd | 17 rAmCharts-2.0.0/rAmCharts/man/ChartCursor-class.Rd | 17 rAmCharts-2.0.0/rAmCharts/man/ChartScrollbar-class.Rd | 15 rAmCharts-2.0.0/rAmCharts/man/DataSet-class.Rd | 25 rAmCharts-2.0.0/rAmCharts/man/DataSet.Rd |only rAmCharts-2.0.0/rAmCharts/man/DataSetSelector-class.Rd | 17 rAmCharts-2.0.0/rAmCharts/man/DataSetSelector.Rd |only rAmCharts-2.0.0/rAmCharts/man/GaugeArrow-class.Rd | 16 rAmCharts-2.0.0/rAmCharts/man/GaugeArrow.Rd |only rAmCharts-2.0.0/rAmCharts/man/GaugeAxis-class.Rd | 14 rAmCharts-2.0.0/rAmCharts/man/GaugeAxis.Rd |only rAmCharts-2.0.0/rAmCharts/man/GaugeBand-class.Rd | 14 rAmCharts-2.0.0/rAmCharts/man/GaugeBand.Rd |only rAmCharts-2.0.0/rAmCharts/man/Guide-class.Rd | 17 rAmCharts-2.0.0/rAmCharts/man/Label-class.Rd | 13 rAmCharts-2.0.0/rAmCharts/man/Label.Rd |only rAmCharts-2.0.0/rAmCharts/man/PeriodSelector-class.Rd | 18 rAmCharts-2.0.0/rAmCharts/man/StockEvent-class.Rd | 17 rAmCharts-2.0.0/rAmCharts/man/StockPanel-class.Rd | 56 rAmCharts-2.0.0/rAmCharts/man/Title-class.Rd | 18 rAmCharts-2.0.0/rAmCharts/man/Title.Rd |only rAmCharts-2.0.0/rAmCharts/man/TrendLine-class.Rd | 8 rAmCharts-2.0.0/rAmCharts/man/TrendLine.Rd |only rAmCharts-2.0.0/rAmCharts/man/ValueAxis-class.Rd | 12 rAmCharts-2.0.0/rAmCharts/man/amAngularGauge.Rd |only rAmCharts-2.0.0/rAmCharts/man/amBarplot.Rd |only rAmCharts-2.0.0/rAmCharts/man/amBoxplot.Rd | 117 + rAmCharts-2.0.0/rAmCharts/man/amBullet.Rd |only rAmCharts-2.0.0/rAmCharts/man/amCandlestick.Rd |only rAmCharts-2.0.0/rAmCharts/man/amChartsOutput.Rd | 20 rAmCharts-2.0.0/rAmCharts/man/amFloatingBar.Rd |only rAmCharts-2.0.0/rAmCharts/man/amFunnel.Rd |only rAmCharts-2.0.0/rAmCharts/man/amHist.Rd | 90 - rAmCharts-2.0.0/rAmCharts/man/amLines.Rd |only rAmCharts-2.0.0/rAmCharts/man/amMekko.Rd |only rAmCharts-2.0.0/rAmCharts/man/amOHLC.Rd |only rAmCharts-2.0.0/rAmCharts/man/amOptions.Rd |only rAmCharts-2.0.0/rAmCharts/man/amPie.Rd |only rAmCharts-2.0.0/rAmCharts/man/amPlot.Rd |only rAmCharts-2.0.0/rAmCharts/man/amRadar.Rd |only rAmCharts-2.0.0/rAmCharts/man/amSolidGauge.Rd |only rAmCharts-2.0.0/rAmCharts/man/amWaterfall.Rd |only rAmCharts-2.0.0/rAmCharts/man/amWind.Rd |only rAmCharts-2.0.0/rAmCharts/man/api.Rd | 2 rAmCharts-2.0.0/rAmCharts/man/controlShinyPlot.Rd | 12 rAmCharts-2.0.0/rAmCharts/man/data_AirPassengers.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_bar.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_candleStick1.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_candleStick2.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_fbar.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_funnel.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_gbar.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_gdp.Rd | 6 rAmCharts-2.0.0/rAmCharts/man/data_mekko.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_pie.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_radar.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_stock1.Rd | 6 rAmCharts-2.0.0/rAmCharts/man/data_waterfall.Rd |only rAmCharts-2.0.0/rAmCharts/man/data_wind.Rd |only rAmCharts-2.0.0/rAmCharts/man/initialize-AmChart.Rd | 370 ++--- rAmCharts-2.0.0/rAmCharts/man/initialize-AmLegend.Rd | 24 rAmCharts-2.0.0/rAmCharts/man/initialize-AxisBase.Rd | 11 rAmCharts-2.0.0/rAmCharts/man/initialize-CategoryAxis.Rd | 27 rAmCharts-2.0.0/rAmCharts/man/initialize-ChartCursor.Rd | 26 rAmCharts-2.0.0/rAmCharts/man/initialize-ChartScrollbar.Rd | 30 rAmCharts-2.0.0/rAmCharts/man/initialize-Guide.Rd | 27 rAmCharts-2.0.0/rAmCharts/man/initialize-PeriodSelector.Rd | 17 rAmCharts-2.0.0/rAmCharts/man/initialize-StockEvent.Rd | 13 rAmCharts-2.0.0/rAmCharts/man/initialize-StockPanel.Rd | 17 rAmCharts-2.0.0/rAmCharts/man/initialize-ValueAxis.Rd | 24 rAmCharts-2.0.0/rAmCharts/man/listProperties-AmObject.Rd | 115 - rAmCharts-2.0.0/rAmCharts/man/methods-AmObject.Rd | 48 rAmCharts-2.0.0/rAmCharts/man/plot.AmChart.Rd | 8 rAmCharts-2.0.0/rAmCharts/man/print-AmObject-method.Rd | 17 rAmCharts-2.0.0/rAmCharts/man/renderAmCharts.Rd | 14 rAmCharts-2.0.0/rAmCharts/man/runExamples.Rd |only rAmCharts-2.0.0/rAmCharts/man/shared-generics.Rd | 41 rAmCharts-2.0.0/rAmCharts/man/show-AmChart-method.Rd | 24 rAmCharts-2.0.0/rAmCharts/man/show-AmObject-method.Rd | 13 rAmCharts-2.0.0/rAmCharts/man/stockGraph.Rd | 10 rAmCharts-2.0.0/rAmCharts/man/stockLegend.Rd | 14 rAmCharts-2.0.0/rAmCharts/tests/testthat.R | 3 rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amBarplot.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amBoxplot.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amBullet.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amCandlestick.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amFloatingBar.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amFunnel.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amHist.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amMekko.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amOHLC.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amOptions.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amPie.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amPlot.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amRadar.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amSolidGauge.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amTests.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amWaterfall.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amWind.R |only rAmCharts-2.0.0/rAmCharts/tests/testthat/test_amchart_setters.R |only 312 files changed, 3169 insertions(+), 2165 deletions(-)
Title: Quality Improvement Charts
Description: Functions for making run charts and basic Shewhart control
charts for measure and count data.
The main function, qic(), creates run and control charts and has a
simple interface with a rich set of options to control data analysis
and plotting, including options for automatic data aggregation by
subgroups, easy analysis of before-and-after data, exclusion of one
or more data points from analysis, and splitting charts into
sequential time periods.
Missing values and empty subgroups are handled gracefully.
Author: Jacob Anhoej [aut, cre],
Timo Roeder [ctb]
Maintainer: Jacob Anhoej <jacob@anhoej.net>
Diff between qicharts versions 0.5.0 dated 2016-02-28 and 0.5.1 dated 2016-03-24
DESCRIPTION | 8 ++-- MD5 | 10 ++--- NEWS | 8 ++++ R/tcc.R | 97 ++++++++++++++++++++++++++++++++++++----------------- build/vignette.rds |binary man/tcc.Rd | 14 ++++--- 6 files changed, 93 insertions(+), 44 deletions(-)
Title: Routines for Fitting Kinetic Models with One or More State
Variables to Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006).
Includes a function for conveniently defining differential equation models,
model solution based on eigenvalues if possible or using numerical solvers
and a choice of the optimisation methods made available by the 'FME' package.
If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using compiled C functions.
Please note that no warranty is implied for correctness of results or fitness
for a particular purpose.
Author: Johannes Ranke [aut, cre, cph],
Katrin Lindenberger [ctb],
René Lehmann [ctb],
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between mkin versions 0.9-41 dated 2015-11-09 and 0.9.42 dated 2016-03-24
mkin-0.9-41/mkin/vignettes/FOCUS_D_cache |only mkin-0.9-41/mkin/vignettes/FOCUS_D_files |only mkin-0.9-41/mkin/vignettes/FOCUS_L_cache |only mkin-0.9-41/mkin/vignettes/FOCUS_L_files |only mkin-0.9.42/mkin/DESCRIPTION | 10 - mkin-0.9.42/mkin/MD5 | 121 ++-------------- mkin-0.9.42/mkin/NEWS.md | 16 ++ mkin-0.9.42/mkin/R/mkinfit.R | 15 +- mkin-0.9.42/mkin/R/mkinmod.R | 6 mkin-0.9.42/mkin/README.md | 31 ---- mkin-0.9.42/mkin/build/vignette.rds |binary mkin-0.9.42/mkin/inst/doc/FOCUS_D.R | 20 ++ mkin-0.9.42/mkin/inst/doc/FOCUS_D.html | 42 +++-- mkin-0.9.42/mkin/inst/doc/FOCUS_L.R | 95 +++++++++++++ mkin-0.9.42/mkin/inst/doc/FOCUS_L.html | 180 ++++++++++++------------- mkin-0.9.42/mkin/inst/doc/FOCUS_Z.pdf |binary mkin-0.9.42/mkin/inst/doc/compiled_models.R | 37 +++-- mkin-0.9.42/mkin/inst/doc/compiled_models.Rmd | 41 +++-- mkin-0.9.42/mkin/inst/doc/compiled_models.html | 120 +++++++++------- mkin-0.9.42/mkin/inst/doc/mkin.pdf |binary mkin-0.9.42/mkin/man/mkinfit.Rd | 8 + mkin-0.9.42/mkin/vignettes/compiled_models.Rmd | 41 +++-- 22 files changed, 433 insertions(+), 350 deletions(-)
Title: Multivariate Random Forest for Linearly Related Output Features
Description: In Random Forest, prediction has been done for single
output feature, while linear relation between the
output features has not been considered in other
packages. In this package, using linear relation of
the output features, a multivariate random forest
prediction has been done, which can predict all the
output features with one Random forest. If there is
high correlation among the features, this MRF
prediction gives better result than the individual
RFs.
Author: Raziur Rahman <razeeebuet@gmail.com>
Maintainer: Raziur Rahman <razeeebuet@gmail.com>
Diff between MultivariateRandomForest versions 1.0 dated 2016-03-13 and 1.1 dated 2016-03-24
DESCRIPTION | 17 +++++++++--- MD5 | 38 ++++++++++++++-------------- R/CrossValidation.R | 6 ++-- R/Imputation.R | 11 ++++---- R/Multi_D_mod.R | 25 ++++++++++++++---- R/MultivariateRandomForest.R | 53 +++++++++++++++++++++++++++++++--------- R/build_single_tree.R | 17 +++++++----- R/predicting.R | 18 +++++++++---- R/single_tree_prediction.R | 17 ++++++------ R/split_node.R | 29 ++++++++++++++------- R/spliting.R | 35 +++++++++++++++++++------- man/CrossValidation.Rd | 6 ++-- man/Imputation.Rd | 8 +++--- man/Multi_D_mod.Rd | 28 ++++++++++++++++----- man/MultivariateRandomForest.Rd | 49 +++++++++++++++++++++++++++--------- man/build_single_tree.Rd | 18 ++++++++----- man/predicting.Rd | 19 +++++++++----- man/single_tree_prediction.Rd | 16 ++++++------ man/split_node.Rd | 28 ++++++++++++++------- man/spliting.Rd | 35 +++++++++++++++++++------- 20 files changed, 320 insertions(+), 153 deletions(-)
More information about MultivariateRandomForest at CRAN
Permanent link
Title: Nomograms for High-Dimensional Cox Models
Description: Build nomograms for high-dimensional Cox models, with support for
reproducible model validation, calibration, and comparison.
Author: Miaozhu Li <miaozhu.li@duke.edu>, Nan Xiao <nanx@uchicago.edu>
Maintainer: Nan Xiao <nanx@uchicago.edu>
Diff between hdnom versions 3.0 dated 2016-01-04 and 3.6 dated 2016-03-24
DESCRIPTION | 10 +- MD5 | 52 +++++++------ NAMESPACE | 1 NEWS.md | 15 +++ R/10.hdnom.compare.calibrate.R | 75 +++++++++++-------- R/11.hdnom.color.palette.R |only R/3.hdnom.validate.R | 74 +++++++++++-------- R/4.hdnom.calibrate.R | 43 ++++++----- R/5.hdnom.external.validate.R | 16 +++- R/6.hdnom.external.calibrate.R | 43 ++++++----- R/7.hdnom.kmplot.R | 49 +++++++++--- R/9.hdnom.compare.validate.R | 136 +++++++++++++++++++---------------- README.md | 4 - build/vignette.rds |binary inst/doc/hdnom.Rmd | 33 +++++++- inst/doc/hdnom.html | 130 +++++++++++++++++++++------------ man/hdnom.kmplot.Rd | 7 + man/kmplot.Rd | 5 + man/palette.aaas.Rd |only man/palette.jco.Rd |only man/palette.lancet.Rd |only man/palette.npg.Rd |only man/plot.hdnom.calibrate.Rd | 7 + man/plot.hdnom.compare.calibrate.Rd | 6 + man/plot.hdnom.compare.validate.Rd | 7 + man/plot.hdnom.external.calibrate.Rd | 6 + man/plot.hdnom.external.validate.Rd | 7 + man/plot.hdnom.validate.Rd | 7 + vignettes/hdnom.Rmd | 33 +++++++- vignettes/hdnom.css |only 30 files changed, 500 insertions(+), 266 deletions(-)
More information about futureheatwaves at CRAN
Permanent link
Title: Functions for Simple Fisheries Stock Assessment Methods
Description: Functions to perform a variety of simple fish stock assessment
methods. Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.5 dated 2016-02-14 and 0.8.6 dated 2016-03-24
DESCRIPTION | 8 +-- MD5 | 51 ++++++++++---------- NEWS.md |only R/FSA-internals.R | 51 ++++++++++++++------ R/alkPlot.R | 40 +++++++++++++--- R/alkSummaries.R | 3 - R/hist.formula.R | 86 +++++++++++++++++++++++------------ R/knitUtil.R | 18 ++++++- R/lencat.R | 28 ++++++----- R/psdAdd.R | 18 ++++--- R/psdPlot.R | 28 ++++++----- R/psdVal.R | 16 +++--- R/vbStarts.R | 3 - man/FSA-internals.Rd | 1 man/hist.formula.Rd | 20 ++++++-- man/knitUtil.Rd | 6 +- man/lencat.Rd | 22 ++++---- man/psdAdd.Rd | 14 +++-- man/psdPlot.Rd | 17 +++--- man/psdVal.Rd | 8 +-- tests/testthat/Rplots.pdf |binary tests/testthat/test_AgeComparisons.R | 12 ++-- tests/testthat/test_AgeLengthKey.R | 29 ++++++----- tests/testthat/test_Internals.R | 32 +++++++++++++ tests/testthat/test_PSD.R | 61 +++++++++++++----------- tests/testthat/test_WSWR.R | 21 ++++---- tests/testthat/test_histFormula.R | 37 +++++++++++++-- 27 files changed, 405 insertions(+), 225 deletions(-)
Title: Ecological Inference
Description: Software accompanying Gary King's book: A Solution to the Ecological Inference Problem. (1997). Princeton University Press. ISBN 978-0691012407.
Author: Gary King <king@harvard.edu>, Molly Roberts <molly.e.roberts@gmail.com>
Maintainer: James Honaker <zelig-zee@iq.harvard.edu>
Diff between ei versions 1.3 dated 2016-01-20 and 1.3-2 dated 2016-03-24
DESCRIPTION | 11 ++++++----- MD5 | 26 +++++++++++++------------- NAMESPACE | 1 - R/tomogRxc3d.R | 35 ++++++++++++++++++++--------------- inst/doc/ei.pdf |binary man/bounds1.Rd | 8 ++++---- man/census1910.Rd | 6 +++--- man/ei.Rd | 2 +- man/ei.sim.Rd | 2 +- man/eiread.Rd | 2 +- man/plot.ei.Rd | 2 +- man/summary.ei.Rd | 2 +- man/tomogRxC.Rd | 2 +- man/tomogRxC3d.Rd | 2 +- 14 files changed, 53 insertions(+), 48 deletions(-)
Title: Dynamic Range Boxes
Description: Improves the concept of multivariate range boxes, which is highly susceptible for outliers and does not consider the distribution of the data. The package uses dynamic range boxes to overcome these problems.
Author: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>,
Wolfgang Trutschnig <Wolfgang.Trutschnig@sbg.ac.at>,
Robert R. Junker <Robert.Junker@sbg.ac.at>,
Jonas Kuppler <Jonas.Kuppler@uni-duesseldorf.de>,
Arne Bathke <Arne.Bathke@sbg.ac.at>
Maintainer: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>
Diff between dynRB versions 0.6 dated 2016-01-07 and 0.7 dated 2016-03-24
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 1 + R/dynRB-internal.R | 11 +++++++++++ R/dynRB_Pn.R | 6 ++++++ R/dynRB_VPa.R | 15 ++++++++++++++- R/dynRB_Vn.R | 8 +++++++- man/dynRB-package.Rd | 4 ++-- man/dynRB_VPa.Rd | 9 ++++++++- 9 files changed, 60 insertions(+), 16 deletions(-)
Title: Bayesian Additive Regression Trees
Description: An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization.
Author: Adam Kapelner and Justin Bleich (R package)
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between bartMachine versions 1.2.1 dated 2016-02-27 and 1.2.2 dated 2016-03-24
bartMachine-1.2.1/bartMachine/man/predict.Rd |only bartMachine-1.2.1/bartMachine/vignettes/bart_package_paper.bib |only bartMachine-1.2.1/bartMachine/vignettes/images |only bartMachine-1.2.1/bartMachine/vignettes/jss_style |only bartMachine-1.2.2/bartMachine/CHANGELOG | 8 bartMachine-1.2.2/bartMachine/DESCRIPTION | 8 bartMachine-1.2.2/bartMachine/MD5 | 110 bartMachine-1.2.2/bartMachine/NAMESPACE | 4 bartMachine-1.2.2/bartMachine/R/bart_arrays.R |only bartMachine-1.2.2/bartMachine/R/bart_package_builders.R | 2 bartMachine-1.2.2/bartMachine/R/bart_package_f_tests.R | 9 bartMachine-1.2.2/bartMachine/R/bart_package_inits.R | 2 bartMachine-1.2.2/bartMachine/R/bart_package_predicts.R | 2 bartMachine-1.2.2/bartMachine/R/zzz.R | 8 bartMachine-1.2.2/bartMachine/build/vignette.rds |binary bartMachine-1.2.2/bartMachine/data/benchmark_datasets.RData |only bartMachine-1.2.2/bartMachine/inst/CITATION | 29 bartMachine-1.2.2/bartMachine/inst/COPYRIGHTS | 2 bartMachine-1.2.2/bartMachine/inst/doc/bartMachine.Rnw | 1934 +++++++--- bartMachine-1.2.2/bartMachine/inst/doc/bartMachine.pdf |binary bartMachine-1.2.2/bartMachine/man/bartMachine.Rd | 8 bartMachine-1.2.2/bartMachine/man/bartMachineArr.Rd |only bartMachine-1.2.2/bartMachine/man/bartMachineCV.Rd | 5 bartMachine-1.2.2/bartMachine/man/benchmark_datasets.Rd |only bartMachine-1.2.2/bartMachine/man/calc_prediction_intervals.Rd | 4 bartMachine-1.2.2/bartMachine/man/cov_importance_test.Rd | 4 bartMachine-1.2.2/bartMachine/man/interaction_investigator.Rd | 4 bartMachine-1.2.2/bartMachine/man/investigate_var_importance.Rd | 4 bartMachine-1.2.2/bartMachine/man/linearity_test.Rd |only bartMachine-1.2.2/bartMachine/man/pd_plot.Rd | 4 bartMachine-1.2.2/bartMachine/man/predict.bartMachine.Rd |only bartMachine-1.2.2/bartMachine/man/predict_bartMachineArr.Rd |only bartMachine-1.2.2/bartMachine/man/var_selection_by_permute.Rd | 4 bartMachine-1.2.2/bartMachine/man/var_selection_by_permute_cv.Rd | 4 bartMachine-1.2.2/bartMachine/vignettes/bartMachine.Rnw | 1934 +++++++--- bartMachine-1.2.2/bartMachine/vignettes/bart_normality_heteroskedasticity_2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/convergence_diagnostics4.pdf |only bartMachine-1.2.2/bartMachine/vignettes/cov_test_body_style2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/cov_test_omnibus2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/cov_test_top_10_2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/cov_test_width2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/covariate_test_age3.pdf |only bartMachine-1.2.2/bartMachine/vignettes/friedman_function_interactions2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/glucose_partial_dependence2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/pdp_horsepower2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/pdp_stroke2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/plot_y_vs_y_hat_cred_ints2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/plot_y_vs_y_hat_pred_ints2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/rmse_num_trees_3.pdf |only bartMachine-1.2.2/bartMachine/vignettes/speed_full4.pdf |only bartMachine-1.2.2/bartMachine/vignettes/speed_zoomed4.pdf |only bartMachine-1.2.2/bartMachine/vignettes/v70i04.bib |only bartMachine-1.2.2/bartMachine/vignettes/var_imp_automobile_cc2.pdf |only bartMachine-1.2.2/bartMachine/vignettes/var_selection_plot2.pdf |only 54 files changed, 2878 insertions(+), 1215 deletions(-)
Title: Amdahl's Profiler, Directed Optimization Made Easy
Description: Assists the evaluation of whether and
where to focus code optimization, using Amdahl's law and visual aids
based on line profiling. Amdahl's profiler organises profiling output
files (including memory profiling) in a visually appealing way.
It is meant to help to balance development
vs. execution time by helping to identify the most promising sections
of code to optimize and projecting potential gains. The package is
an addition to R's standard profiling tools and is not a wrapper for them.
Author: Marco D. Visser
Maintainer: Marco D. Visser <marco.d.visser@gmail.com>
Diff between aprof versions 0.3.1 dated 2015-10-09 and 0.3.2 dated 2016-03-24
DESCRIPTION | 9 +++--- MD5 | 22 ++++++++-------- NAMESPACE | 2 - R/aprof.R | 64 ++++++++++++++++++------------------------------- man/aprof.Rd | 12 ++++----- man/is.aprof.Rd | 2 - man/plot.Rd | 7 ++--- man/print.Rd | 2 - man/profileplot.Rd | 2 - man/readLineDensity.Rd | 2 - man/summary.Rd | 2 - man/targetedSummary.Rd | 10 +------ 12 files changed, 57 insertions(+), 79 deletions(-)
Title: Exploring Water Quality Monitoring Data
Description: Functions to assist in the processing and
exploration of data from environmental monitoring programs.
The package name stands for "water quality" and reflects the
original focus on time series data for physical and chemical
properties of water, as well as the biota. Intended for
programs that sample approximately monthly, quarterly or
annually at discrete stations, a feature of many legacy data
sets. Most of the functions should be useful for analysis of
similar-frequency time series regardless of the subject
matter.
Author: Alan D. Jassby and James E. Cloern
Maintainer: Alan Jassby <wq@fastmail.net>
Diff between wq versions 0.4.6 dated 2016-03-20 and 0.4.7 dated 2016-03-24
wq-0.4.6/wq/R/ruleN.R |only wq-0.4.7/wq/DESCRIPTION | 13 ++++--- wq-0.4.7/wq/MD5 | 35 +++++++++++---------- wq-0.4.7/wq/NAMESPACE | 1 wq-0.4.7/wq/NEWS | 21 ++++++++---- wq-0.4.7/wq/R/eof.R | 57 ++++++++++++++++++++--------------- wq-0.4.7/wq/R/eofNum.R | 50 +++++++++++------------------- wq-0.4.7/wq/R/eofPlot.R | 23 ++++++-------- wq-0.4.7/wq/R/plotSeason.R | 27 +++++++--------- wq-0.4.7/wq/R/plotTsAnom.R | 20 ++++++------ wq-0.4.7/wq/R/plotTsTile.R | 4 +- wq-0.4.7/wq/build/partial.rdb |binary wq-0.4.7/wq/build/vignette.rds |only wq-0.4.7/wq/inst/doc |only wq-0.4.7/wq/man/eof.Rd | 29 +++++++++++------ wq-0.4.7/wq/man/eofNum.Rd | 45 +++++++++++---------------- wq-0.4.7/wq/man/eofPlot.Rd | 28 ++++++----------- wq-0.4.7/wq/man/plotTsTile.Rd | 14 ++++---- wq-0.4.7/wq/vignettes/wq-package.Rmd | 10 +++--- 19 files changed, 188 insertions(+), 189 deletions(-)
Title: Convert Between Spatial Objects and Well-Known Binary Geometry
Description: Utility functions to convert between the 'Spatial' classes
specified by the package 'sp', and the well-known binary '(WKB)'
representation for geometry specified by the Open Geospatial Consortium.
Supports 'Spatial' objects of class 'SpatialPoints',
'SpatialPointsDataFrame', 'SpatialLines', 'SpatialLinesDataFrame',
'SpatialPolygons', and 'SpatialPolygonsDataFrame'. Supports 'WKB' geometry
types 'Point', 'LineString', 'Polygon', 'MultiPoint', 'MultiLineString', and
'MultiPolygon'. Includes extensions to enable creation of maps with
'TIBCO Spotfire'.
Author: TIBCO Software Inc.
Maintainer: Ian Cook <ianmcook@gmail.com>
Diff between wkb versions 0.2-0 dated 2015-09-28 and 0.3-0 dated 2016-03-24
DESCRIPTION | 27 ++++++++++++++------------- LICENSE | 2 +- MD5 | 17 ++++++++++------- R/XYListToWKBLineString.R |only R/contourLinesToWKB.R |only R/coordPairsStringToWKBPolygon.R |only R/hex2raw.R | 3 ++- R/writeWKB.R | 23 ++++++++++++----------- tests/testthat/testmultipoint.R | 4 ++-- tests/testthat/testmultipolygon.R | 4 ++-- tests/testthat/testpolygon.R | 4 ++-- 11 files changed, 45 insertions(+), 39 deletions(-)
Title: Seasonal/Sequential (Instants/Durations, Even or not) Time
Series
Description: Objects to manipulate sequential and seasonal time series. Sequential time series based on time instants and time durations are handled. Both can be regularly or unevenly spaced (overlapping durations are allowed). Only POSIX* format are used for dates and times. The following classes are provided : 'POSIXcti', 'POSIXctp', 'TimeIntervalDataFrame', 'TimeInstantDataFrame', 'SubtimeDataFrame' ; methods to switch from a class to another and to modify the time support of series (hourly time series to daily time series for instance) are also defined. Tools provided can be used for instance to handle environmental monitoring data (not always produced on a regular time base).
Author: Vladislav Navel
Maintainer: Vladislav Navel <vnavel@yahoo.fr>
Diff between timetools versions 1.7.3 dated 2015-11-19 and 1.7.4 dated 2016-03-24
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/TimeInstantDataFrame.R | 31 +++++++++++++++++++++---------- R/TimeIntervalDataFrame.R | 4 +++- R/split.R | 1 + README | 10 ++++++++++ man/timetools-package.Rd | 4 ++-- 7 files changed, 47 insertions(+), 23 deletions(-)
Title: Fitting Step-Functions
Description: Allows to fit step-functions to univariate serial data where neither the number of jumps nor their positions is known.
Author: Timo Aspelmeier [cre, aut],
Thomas Hotz [aut],
Hannes Sieling [aut],
Pein Florian [ctb]
Maintainer: Timo Aspelmeier <timo.aspelmeier@mathematik.uni-goettingen.de>
Diff between stepR versions 1.0-3 dated 2015-06-18 and 1.0-4 dated 2016-03-24
ChangeLog | 6 ++++++ DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 3 ++- 4 files changed, 17 insertions(+), 10 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, PCA and correlation matrices, cluster analyses, scatter
plots, Likert scales, effects plots of regression models (including interaction
terms) and much more.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 1.9.2 dated 2016-03-02 and 1.9.3 dated 2016-03-24
DESCRIPTION | 12 MD5 | 137 - NAMESPACE | 3 NEWS | 21 NEWS.md | 32 R/helpfunctions.R | 52 R/sjPlotAncovaLSMeans.R | 1248 ++++++++-------- R/sjPlotAnova.R | 650 ++++---- R/sjPlotClusterAnalysis.R | 1792 +++++++++++------------ R/sjPlotCorr.R | 712 ++++----- R/sjPlotFrequencies.R | 1568 ++++++++++---------- R/sjPlotGLME.R | 182 +- R/sjPlotGroupFrequencies.R | 11 R/sjPlotGroupPropTable.R | 525 +++--- R/sjPlotInteractions.R | 162 +- R/sjPlotLikert.R | 1322 ++++++++--------- R/sjPlotLinreg.R | 3080 ++++++++++++++++++++-------------------- R/sjPlotLinregMultiple.R | 927 +++++------- R/sjPlotOdds.R | 2073 +++++++++++++------------- R/sjPlotOddsMultiple.R | 43 R/sjPlotPCA.R | 940 ++++++------ R/sjPlotPearsonsChi2Test.R | 290 +-- R/sjPlotPolynomials.R | 580 +++---- R/sjPlotPropTable.R | 1042 ++++++------- R/sjPlotScatter.R | 754 ++++----- R/sjPlotSetTheme.R | 1 R/sjPlotStackFrequencies.R | 30 R/sjTabCorr.R | 1020 ++++++------- R/sjTabDataFrame.R | 6 R/sjTabFrequencies.R | 11 R/sjTabGrpmean.R | 432 ++--- R/sjTabItemAnalysis.R | 808 +++++----- R/sjTabLinReg.R | 192 ++ R/sjTabMannWhitney.R | 172 +- R/sjTabOdds.R | 216 ++ R/sjTabPCA.R | 1188 +++++++-------- R/sjTabPropTable.R | 1162 +++++++-------- R/sjTabSPSS.R | 828 +++++----- R/sjTabStackFrq.R | 1032 ++++++------- R/zzz.R | 12 README.md | 84 - build |only man/sjPlot-package.Rd | 4 man/sjp.glm.Rd | 11 man/sjp.glmer.Rd | 46 man/sjp.glmm.Rd | 21 man/sjp.grpfrq.Rd | 2 man/sjp.int.Rd | 25 man/sjp.likert.Rd | 4 man/sjp.lm.Rd | 3 man/sjp.lmer.Rd | 19 man/sjp.lmm.Rd | 29 man/sjp.xtab.Rd | 2 man/sjt.df.Rd | 4 man/sjt.frq.Rd | 7 man/sjt.glm.Rd | 18 man/sjt.glmer.Rd | 28 man/sjt.itemanalysis.Rd | 4 man/sjt.lm.Rd | 15 man/sjt.lmer.Rd | 30 man/sjt.stackfrq.Rd | 4 man/sjt.xtab.Rd | 4 tests/testthat.R | 12 tests/testthat/test_sjpfrq.R | 290 +-- tests/testthat/test_sjpgrpfrq.R | 50 tests/testthat/test_sjpint.R | 8 tests/testthat/test_sjplikert.R | 148 - tests/testthat/test_sjtglm.R | 358 ++-- tests/testthat/test_sjtlm.R | 466 +++--- tests/testthat/test_sjtxtab.R | 198 +- 70 files changed, 13800 insertions(+), 13362 deletions(-)
Title: D3 JavaScript Scatterplot from R
Description: Creates 'D3' 'JavaScript' scatterplots from 'R' with interactive
features : panning, zooming, tooltips, etc.
Author: Julien Barnier [aut, cre],
Kent Russell [aut, ctb],
Mike Bostock [aut, cph] (d3.js library, http://d3js.org),
Susie Lu [aut, cph] (d3-legend library, http://d3-legend.susielu.com/),
Speros Kokenes [aut, cph] (d3-lasso-plugin library,
https://github.com/skokenes/D3-Lasso-Plugin)
Maintainer: Julien Barnier <julien.barnier@ens-lyon.fr>
Diff between scatterD3 versions 0.6.1 dated 2016-02-29 and 0.6.2 dated 2016-03-24
DESCRIPTION | 8 +-- MD5 | 14 ++--- NEWS | 9 +++ R/scatterD3.R | 6 ++ build/vignette.rds |binary inst/doc/introduction.html | 62 ++++++++++++------------- inst/htmlwidgets/lib/d3-lasso-plugin/lasso.css | 4 - inst/htmlwidgets/scatterD3.js | 4 + 8 files changed, 61 insertions(+), 46 deletions(-)
Title: Moving-Window Add-on for 'plyr'
Description: Apply a function in a moving window, then
combine the results in a data frame.
Author: "Alexandre Genin <alex@lecairn.org> [aut, cre]"
Maintainer: Alexandre Genin <alex@lecairn.org>
Diff between rollply versions 0.4.2 dated 2015-09-21 and 0.5.0 dated 2016-03-24
rollply-0.4.2/rollply/vignettes/rollply_intro.html |only rollply-0.5.0/rollply/DESCRIPTION | 20 +- rollply-0.5.0/rollply/MD5 | 40 ++-- rollply-0.5.0/rollply/NAMESPACE | 2 rollply-0.5.0/rollply/NEWS |only rollply-0.5.0/rollply/R/RcppExports.R | 4 rollply-0.5.0/rollply/R/build_grid_ahull_crop.R | 38 ++-- rollply-0.5.0/rollply/R/build_grid_ahull_fill.R | 132 +++++++++------ rollply-0.5.0/rollply/R/meadow.R |only rollply-0.5.0/rollply/R/rollply.R | 173 ++++++++++++-------- rollply-0.5.0/rollply/README.md |only rollply-0.5.0/rollply/build |only rollply-0.5.0/rollply/data/meadow.rda |binary rollply-0.5.0/rollply/inst |only rollply-0.5.0/rollply/man/build_grid_ahull_crop.Rd | 32 ++- rollply-0.5.0/rollply/man/build_grid_ahull_fill.Rd | 56 ++++-- rollply-0.5.0/rollply/man/build_grid_identical.Rd | 14 - rollply-0.5.0/rollply/man/build_grid_squaretile.Rd | 12 - rollply-0.5.0/rollply/man/meadow.Rd |only rollply-0.5.0/rollply/man/rollply.Rd | 132 ++++++++++----- rollply-0.5.0/rollply/src/RcppExports.cpp | 13 + rollply-0.5.0/rollply/src/inahull_cpp.cpp |only rollply-0.5.0/rollply/tests/testthat/test_grids.R | 4 rollply-0.5.0/rollply/tests/testthat/test_inahull.R |only rollply-0.5.0/rollply/vignettes/rollply.Rmd |only 25 files changed, 437 insertions(+), 235 deletions(-)
Title: Access and Plot CanVec and CanVec+ Data for Rapid Basemap
Creation in Canada
Description: Provides an interface to the National Topographic System (NTS),
which is the way in which a number of freely available Canadian datasets are
organized. CanVec and CanVec+ datasets, which include all data used to create
Canadian topographic maps, are two such datasets that are useful in creating
vector-based maps for locations across Canada. This packages searches CanVec
data by location, plots it using pretty defaults, and exports it to human-
readable shapefiles for use in another GIS.
Author: Dewey Dunnington <dewey@fishandwhistle.net>
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between rcanvec versions 0.1.4 dated 2016-01-13 and 0.1.6 dated 2016-03-24
DESCRIPTION | 23 ++++++++++--------- MD5 | 50 +++++++++++++++++++++---------------------- NAMESPACE | 4 --- R/canvec.R | 12 +++++----- README.md | 12 ++++++---- man/canvec.cachedir.Rd | 2 - man/canvec.cleanup.Rd | 2 - man/canvec.defaultoptions.Rd | 2 - man/canvec.download.Rd | 3 +- man/canvec.export.Rd | 15 +++++++----- man/canvec.findlayer.Rd | 6 ++--- man/canvec.load.Rd | 3 +- man/canvec.loadfromdir.Rd | 2 - man/canvec.plot.Rd | 2 - man/canvec.qplot.Rd | 17 +++++++------- man/canvec.url.Rd | 2 - man/canvec_layers.Rd | 2 - man/nts.Rd | 3 +- man/nts.SCALE250K.Rd | 9 ++++--- man/nts.SCALE50K.Rd | 9 ++++--- man/nts.SCALESERIES.Rd | 5 +--- man/nts.bbox.Rd | 3 +- man/nts.bybbox.Rd | 2 - man/nts.idat.Rd | 4 +-- man/ntsstring.Rd | 5 ++-- man/rcanvec-package.Rd | 2 - 26 files changed, 107 insertions(+), 94 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 1.7-3 dated 2016-03-01 and 1.8-0 dated 2016-03-24
DESCRIPTION | 8 - MD5 | 42 ++--- R/GoogleMapsPlot.R | 2 R/TaylorDiagram.R | 3 R/calendarPlot.R | 254 +++++++++++++++++--------------- R/checkPrep.R | 17 +- R/cutData.R | 412 ++++++++++++++++++++++++++-------------------------- R/polarPlot.R | 162 +++++++++++++++++--- R/quickText.R | 4 R/scatterPlot.R | 44 ++++- R/smoothTrend.R | 2 R/timeProp.R | 13 - R/trajCluster.R | 4 R/utilities.R | 18 ++ R/windRose.R | 6 README.md | 3 data/mydata.rda |binary man/calendarPlot.Rd | 226 +++++++++++++++------------- man/cutData.Rd | 68 +++----- man/polarPlot.Rd | 51 +++--- man/timeProp.Rd | 7 man/trajCluster.Rd | 4 22 files changed, 766 insertions(+), 584 deletions(-)
Title: Wald Test of Nonlinear Restrictions and Nonlinear CI
Description: Wald Test for nonlinear restrictions on model parameters and confidence
intervals for nonlinear functions of parameters using delta-method. Applicable
after ANY model, provided parameters estimates and their covariance matrix are
available.
Author: Oleh Komashko
Maintainer: Oleh Komashko <oleg_komashko@ukr.net>
Diff between nlWaldTest versions 1.0.1 dated 2014-09-18 and 1.1.3 dated 2016-03-24
nlWaldTest-1.0.1/nlWaldTest/R/nlWald25.R |only nlWaldTest-1.1.3/nlWaldTest/DESCRIPTION | 25 ++- nlWaldTest-1.1.3/nlWaldTest/MD5 | 14 +- nlWaldTest-1.1.3/nlWaldTest/NAMESPACE | 4 nlWaldTest-1.1.3/nlWaldTest/NEWS |only nlWaldTest-1.1.3/nlWaldTest/R/nlConfint.R |only nlWaldTest-1.1.3/nlWaldTest/R/nlWaldTest-internal.R |only nlWaldTest-1.1.3/nlWaldTest/R/nlWaldtest.R |only nlWaldTest-1.1.3/nlWaldTest/man/CESdata.Rd | 2 nlWaldTest-1.1.3/nlWaldTest/man/nlConfint.Rd |only nlWaldTest-1.1.3/nlWaldTest/man/nlWaldtest.Rd | 127 ++++++++++---------- 11 files changed, 92 insertions(+), 80 deletions(-)
Title: Computes Pdf, Cdf, Quantile and Random Numbers, Measures of
Inference for 19 General Families of Distributions
Description: Computes the probability density function, cumulative distribution function, quantile function, random numbers and measures of inference for the following general families of distributions (each family defined in terms of an arbitrary cdf G): Marshall Olkin G distributions, exponentiated G distributions, beta G distributions, gamma G distributions, Kumaraswamy G distributions, generalized beta G distributions, beta extended G distributions, gamma G distributions, gamma uniform G distributions, beta exponential G distributions, Weibull G distributions, log gamma G I distributions, log gamma G II distributions, exponentiated generalized G distributions, exponentiated Kumaraswamy G distributions, geometric exponential Poisson G distributions, truncated-exponential skew-symmetric G distributions, modified beta G distributions, and exponentiated exponential Poisson G distributions.
Author: Saralees Nadarajah, Ricardo Rocha
Maintainer: Saralees Nadarajah <Saralees.Nadarajah@manchester.ac.uk>
Diff between Newdistns versions 2.0 dated 2015-03-04 and 2.1 dated 2016-03-24
DESCRIPTION | 8 ++++---- MD5 | 45 +++++++++++++++++++++++---------------------- NAMESPACE | 6 +++++- inst |only man/Newdistns-package.Rd | 6 +++--- man/beg.Rd | 2 +- man/betaexpg.Rd | 2 +- man/betag.Rd | 2 +- man/eepg.Rd | 2 +- man/eg.Rd | 2 +- man/expg.Rd | 2 +- man/expkumg.Rd | 2 +- man/gammag.Rd | 2 +- man/gammag1.Rd | 2 +- man/gammag2.Rd | 2 +- man/gbg.Rd | 2 +- man/gepg.Rd | 2 +- man/kumg.Rd | 2 +- man/loggammag1.Rd | 2 +- man/loggammag2.Rd | 2 +- man/mbetag.Rd | 2 +- man/mog.Rd | 2 +- man/tessg.Rd | 2 +- man/weibullg.Rd | 2 +- 24 files changed, 54 insertions(+), 49 deletions(-)
Title: Machine Coded Genetic Algorithms for Real-Valued Optimization
Problems
Description: Machine coded genetic algorithm (MCGA) is a fast tool for
real-valued optimization problems. It uses the byte
representation of variables rather than real-values. It
performs the classical crossover operations (uniform) on these
byte representations. Mutation operator is also similar to
classical mutation operator, which is to say, it changes a
randomly selected byte value of a chromosome by +1 or -1 with
probability 1/2. In MCGAs there is no need for
encoding-decoding process and the classical operators are
directly applicable on real-values. It is fast and can handle a
wide range of a search space with high precision. Using a
256-unary alphabet is the main disadvantage of this algorithm
but a moderate size population is convenient for many problems.
Package also includes multi_mcga function for multi objective
optimization problems. This function sorts the chromosomes
using their ranks calculated from the non-dominated sorting
algorithm.
Author: Mehmet Hakan Satman
Maintainer: Mehmet Hakan Satman <mhsatman@istanbul.edu.tr>
Diff between mcga versions 2.0.9 dated 2014-03-25 and 3.0 dated 2016-03-24
DESCRIPTION | 52 +++++++++++++++------------- MD5 | 49 +++++++++++++++++++++++--- NAMESPACE | 13 ++++--- R/RcppExports.R |only R/oplibrary.R |only R/zzz.r | 9 ++++ inst |only man/ByteCodeMutation.Rd |only man/ByteCodeMutationUsingDoubles.Rd |only man/ByteCodeMutationUsingDoublesRandom.Rd |only man/ByteVectorToDoubles.Rd |only man/BytesToDouble.Rd |only man/DoubleToBytes.Rd |only man/DoubleVectorToBytes.Rd |only man/EnsureBounds.Rd |only man/MaxDouble.Rd |only man/OnePointCrossOver.Rd |only man/OnePointCrossOverOnDoublesUsingBytes.Rd |only man/SizeOfDouble.Rd |only man/SizeOfInt.Rd |only man/SizeOfLong.Rd |only man/TwoPointCrossOver.Rd |only man/TwoPointCrossOverOnDoublesUsingBytes.Rd |only man/UniformCrossOver.Rd |only man/UniformCrossOverOnDoublesUsingBytes.Rd |only man/arithmetic_crossover.Rd |only man/blx_crossover.Rd |only man/byte_crossover.Rd |only man/byte_crossover_1p.Rd |only man/byte_crossover_2p.Rd |only man/byte_mutation.Rd |only man/byte_mutation_dynamic.Rd |only man/byte_mutation_random.Rd |only man/byte_mutation_random_dynamic.Rd |only man/flat_crossover.Rd |only man/linear_crossover.Rd |only man/mcga.Rd | 2 - man/mcga2.Rd |only man/sbx_crossover.Rd |only man/unfair_average_crossover.Rd |only src/RcppExports.cpp |only src/mcga.c | 35 ++++++++++++------ src/multi_mcga.c | 35 ++++++++++++------ src/typeconversations.cpp |only 44 files changed, 135 insertions(+), 60 deletions(-)
Title: Kolmogorov-Zurbenko Adaptive Filters
Description: Time Series Analysis including break detection, spectral analysis, KZ Fourier Transforms.
Author: Brian Close <brian.close@gmail.com> and Igor Zurbenko <IZurbenko@albany.edu>
Maintainer: Brian Close <brian.close@gmail.com>
Diff between kza versions 3.2.0 dated 2016-01-29 and 4.0.0 dated 2016-03-24
kza-3.2.0/kza/cleanup |only kza-3.2.0/kza/configure |only kza-3.2.0/kza/configure.ac |only kza-3.2.0/kza/data |only kza-3.2.0/kza/man/fars.Rd |only kza-3.2.0/kza/src/Makevars.in |only kza-3.2.0/kza/src/Makevars.win |only kza-3.2.0/kza/src/build |only kza-3.2.0/kza/src/ckzft.c |only kza-3.2.0/kza/src/config.h |only kza-3.2.0/kza/src/fftw3.h |only kza-3.2.0/kza/src/kzft.c |only kza-3.2.0/kza/src/kzft.h |only kza-3.2.0/kza/src/kzp.c |only kza-3.2.0/kza/src/kztp.c |only kza-4.0.0/kza/DESCRIPTION | 8 - kza-4.0.0/kza/MD5 | 33 +--- kza-4.0.0/kza/R/kza.R | 2 kza-4.0.0/kza/R/kzft.R | 303 ++++++++++------------------------------- kza-4.0.0/kza/README | 2 kza-4.0.0/kza/man/kza.Rd | 3 kza-4.0.0/kza/man/kzft.Rd | 28 --- kza-4.0.0/kza/man/kzp.Rd | 13 - kza-4.0.0/kza/src/Rkza.c | 11 - 24 files changed, 102 insertions(+), 301 deletions(-)
Title: Plot the Effects of Variables in Interaction Terms
Description: Plots the conditional coefficients ("marginal effects") of
variables included in multiplicative interaction terms.
Author: Frederick Solt <frederick-solt@uiowa.edu>, Yue Hu <yue-hu-1@uiowa.edu>
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Diff between interplot versions 0.1.2.0 dated 2016-03-17 and 0.1.2.1 dated 2016-03-24
DESCRIPTION | 6 +-- MD5 | 12 +++--- NEWS.md | 6 ++- inst/doc/interplot-vignette.R | 21 ++++++++++- inst/doc/interplot-vignette.Rmd | 49 ++++++++++++++++++++++++-- inst/doc/interplot-vignette.html | 72 +++++++++++++++++++++++++++++---------- vignettes/interplot-vignette.Rmd | 5 -- 7 files changed, 134 insertions(+), 37 deletions(-)
Title: Flexible Parametric Survival and Multi-State Models
Description: Flexible parametric models for time-to-event data, including the Royston-Parmar spline model, generalized gamma and generalized F distributions. Any user-defined parametric distribution can be fitted, given at least an R function defining the probability density or hazard. There are also tools for fitting and predicting from fully parametric multi-state models.
Author: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between flexsurv versions 0.7 dated 2015-11-13 and 0.7.1 dated 2016-03-24
DESCRIPTION | 8 ++-- MD5 | 18 +++++----- R/flexsurvreg.R | 70 ++++++++++++++++++++++++++--------------- R/spline.R | 8 +++- build/vignette.rds |binary inst/NEWS | 9 +++++ inst/doc/flexsurv-examples.pdf |binary inst/doc/flexsurv.pdf |binary man/flexsurvreg.Rd | 2 - tests/testthat/test_deriv.R | 53 ++++++++++++++----------------- 10 files changed, 99 insertions(+), 69 deletions(-)
Title: Interactive Interfaces for Results Exploration
Description: Shiny interfaces and graphical functions for multivariate analysis results exploration.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@ens-lyon.fr>
Diff between explor versions 0.2 dated 2016-03-03 and 0.2.1 dated 2016-03-24
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 8 ++++++++ R/explor_PCA.R | 2 +- R/prepare_results_MCA.R | 6 ++++-- build/vignette.rds |binary inst/doc/introduction_en.html | 4 ++-- inst/doc/introduction_fr.html | 4 ++-- tests/testthat/test_prepare_results_MCA.R | 2 +- 9 files changed, 30 insertions(+), 20 deletions(-)
Title: Analysis of Discretely Observed Linear
Birth-and-Death(-and-Immigration) Markov Chains
Description: Provides Frequentist (EM) and Bayesian (MCMC) Methods for Inference of Birth-Death-Immigration Markov Chains.
Author: Charles Doss, Vladimir Minin, Marc Suchard
Maintainer: Charles Doss <cdoss@umn.edu>
Diff between DOBAD versions 1.0.4 dated 2014-12-01 and 1.0.5 dated 2016-03-24
DOBAD-1.0.4/DOBAD/README |only DOBAD-1.0.4/DOBAD/vignettes/Makefile |only DOBAD-1.0.5/DOBAD/DESCRIPTION | 16 ++++++------ DOBAD-1.0.5/DOBAD/MD5 | 20 +++++++++------ DOBAD-1.0.5/DOBAD/NAMESPACE | 4 +++ DOBAD-1.0.5/DOBAD/build |only DOBAD-1.0.5/DOBAD/inst/doc/BD_EM.Rnw |only DOBAD-1.0.5/DOBAD/inst/doc/BD_EM.pdf |binary DOBAD-1.0.5/DOBAD/inst/doc/BD_EM_wImmig.R |only DOBAD-1.0.5/DOBAD/inst/doc/BD_EM_wImmig.Rnw |only DOBAD-1.0.5/DOBAD/inst/doc/BD_MCMC.R |only DOBAD-1.0.5/DOBAD/inst/doc/BD_MCMC.Rnw |only DOBAD-1.0.5/DOBAD/inst/doc/BD_MCMC.pdf |binary DOBAD-1.0.5/DOBAD/inst/doc/sim_condBD.R |only DOBAD-1.0.5/DOBAD/inst/doc/sim_condBD.Rnw |only DOBAD-1.0.5/DOBAD/vignettes/BD_EM.Rnw | 37 ++++++++++++++-------------- 16 files changed, 44 insertions(+), 33 deletions(-)
Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the new product development.
Subroutines include combinatorial search (all possible subset regression), productivity evaluation using distance measures: DDF (directional distance function), DEA (data envelopment analysis), SBM (slack-based measure), and SF (shortage function), benchmarking, risk analysis, technology adoption model, new product target setting, etc.
Author: Dong-Joon Lim, PhD
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>
Diff between DJL versions 2.0 dated 2016-02-06 and 2.1 dated 2016-03-24
DESCRIPTION | 6 - MD5 | 60 +++++----- NEWS | 13 ++ R/DJL-internal.R | 251 ++++++++++++++++++++++------------------------ R/dm.ddf.R | 3 R/dm.dea.R | 4 R/dm.sbm.R | 1 R/dm.sf.R | 3 R/map.soa.ddf.R | 1 R/map.soa.dea.R | 1 R/map.soa.sbm.R | 1 R/map.soa.sf.R | 1 R/roc.dea.R | 7 - R/roc.sf.R | 3 R/target.arrival.dea.R | 1 R/target.arrival.sf.R | 3 R/target.spec.dea.R | 25 +++- man/dm.ddf.Rd | 10 - man/dm.dea.Rd | 10 - man/dm.sbm.Rd | 8 - man/dm.sf.Rd | 12 +- man/ma.aps.reg.Rd | 10 - man/map.soa.ddf.Rd | 16 +- man/map.soa.dea.Rd | 16 +- man/map.soa.sbm.Rd | 12 +- man/map.soa.sf.Rd | 18 +-- man/roc.dea.Rd | 30 ++--- man/roc.sf.Rd | 18 +-- man/target.arrival.dea.Rd | 14 +- man/target.arrival.sf.Rd | 18 +-- man/target.spec.dea.Rd | 28 ++--- 31 files changed, 323 insertions(+), 281 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis of spectral data obtained via nuclear magnetic resonance (NMR), infrared (IR) or Raman spectroscopy. Includes functions for plotting and inspecting spectra, peak alignment, hierarchical cluster analysis (HCA), principal components analysis (PCA) and model-based clustering. Robust methods appropriate for this type of high-dimensional data are available. ChemoSpec is designed with metabolomics data sets in mind, where the samples fall into groups such as treatment and control. Graphical output is formatted consistently for publication quality plots. ChemoSpec is intended to be very user friendly and help you get usable results quickly. A vignette covering typical operations is available.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec versions 4.2.8 dated 2016-01-26 and 4.3.17 dated 2016-03-24
DESCRIPTION | 10 ++++----- MD5 | 38 ++++++++++++++++++++---------------- NAMESPACE | 6 ++--- NEWS | 13 ++++++++++++ R/baselineSpectra.R | 47 ++++++++++++++++++++++++++++++++++++++++----- R/check4Gaps.R | 2 - R/files2SpectraObject.R | 10 ++++----- R/normSpectra.R | 11 ++++++++++ R/plotScores.R | 2 - R/plotSpectraDist.R |only R/sgfSpectra.R |only R/sumSpectra.R | 23 +++++++++++++--------- R/surveySpectra.R | 26 +++++++++++++++++------- build/vignette.rds |binary inst/doc/ChemoSpec.Rnw | 13 ++++++------ inst/doc/ChemoSpec.pdf |binary man/baselineSpectra.Rd | 9 +++++--- man/normSpectra.Rd | 4 +-- man/plotSpectraDist.Rd |only man/sgfSpectra.Rd |only vignettes/ChemoSpec.Rnw | 13 ++++++------ vignettes/chemometrics.bib | 2 - 22 files changed, 157 insertions(+), 72 deletions(-)
Title: Calculate and Analyze Blau Status for Measuring Social Distance
Description: An integrated set of tools to calculate and analyze Blau statuses quantifying social distance between individuals belonging to organizations. Relational (network) data may be incorporated for additional analyses.
Author: Cheng Wang*, Michael Genkin*, George Berry, Liyuan Chen, Matthew Brashears *Both authors contributed equally to this work and their names are randomly ordered
Maintainer: Cheng Wang <cwang3@nd.edu>
Diff between Blaunet versions 2.0.1 dated 2015-12-27 and 2.0.2 dated 2016-03-24
Blaunet-2.0.1/Blaunet/inst/scripts/diagnostic.R |only Blaunet-2.0.2/Blaunet/DESCRIPTION | 6 +- Blaunet-2.0.2/Blaunet/MD5 | 18 +++--- Blaunet-2.0.2/Blaunet/data/BSANet.rda |binary Blaunet-2.0.2/Blaunet/inst/scripts/blaububbles.R | 69 +++++++++++++++++------ Blaunet-2.0.2/Blaunet/inst/scripts/blaunetgui.R | 10 +-- Blaunet-2.0.2/Blaunet/inst/scripts/command.pdf |binary Blaunet-2.0.2/Blaunet/inst/scripts/dynamics.R | 28 ++++----- Blaunet-2.0.2/Blaunet/inst/scripts/graphic.pdf |binary Blaunet-2.0.2/Blaunet/inst/scripts/nicheplot.R |only Blaunet-2.0.2/Blaunet/man/blaunet-package.Rd | 4 - 11 files changed, 84 insertions(+), 51 deletions(-)