Title: Read and Write MAT Files and Call MATLAB from Within R
Description: Methods readMat() and writeMat() for reading and writing MAT files. For user with MATLAB v6 or newer installed (either locally or on a remote host), the package also provides methods for controlling MATLAB (trademark) via R and sending and retrieving data between R and MATLAB.
Author: Henrik Bengtsson [aut, cre, cph], Andy Jacobson [ctb] (Internal MAT v4 reader), Jason Riedy [ctb] (Support for reading compressed files, sparse matrices and UTF-encoded strings.)
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.matlab versions 3.5.0 dated 2016-03-06 and 3.5.1 dated 2016-03-27
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 5 +++++ R/Matlab.R | 6 ------ man/Matlab.Rd | 6 ------ 5 files changed, 13 insertions(+), 20 deletions(-)
Title: Quantile-Based Spectral Analysis of Time Series
Description: Methods to determine, smooth and plot quantile periodograms for
univariate and multivariate time series.
Author: Tobias Kley [aut, cre],
Stefan Birr [ctb] (Contributions to lag window estimation)
Maintainer: Tobias Kley <t.kley@lse.ac.uk>
Diff between quantspec versions 1.2-0 dated 2015-10-20 and 1.2-1 dated 2016-03-27
DESCRIPTION | 11 MD5 | 262 +++++------ NAMESPACE | 2 NEWS | 8 R/Class-ClippedFT.R | 6 R/Class-QuantilePG.R | 6 R/Class-QuantileSD.R | 4 R/Class-SmoothedPG.R | 9 R/RcppExports.R | 4 R/models.R | 2 R/quantspec-package.R | 18 build/vignette.rds |binary inst/CITATION | 34 - inst/doc/quantspec.R | 48 -- inst/doc/quantspec.Rnw | 799 ++++++++++++++++++++-------------- inst/doc/quantspec.pdf |binary inst/examples/QuantilePG.R | 2 man/BootPos-class.Rd | 2 man/ClippedCov-class.Rd | 16 man/ClippedCov-constructor.Rd | 8 man/ClippedFT-class.Rd | 8 man/ClippedFT-constructor.Rd | 8 man/FreqRep-class.Rd | 2 man/IntegrQuantileSD-class.Rd | 2 man/IntegrQuantileSD-constructor.Rd | 4 man/KernelWeight-class.Rd | 16 man/KernelWeight-constructor.Rd | 2 man/LagEstimator-class.Rd | 6 man/LagEstimator-constructor.Rd | 8 man/LagKernelWeight-class.Rd | 12 man/LagKernelWeight-constructor.Rd | 2 man/LagOperator-class.Rd | 4 man/MovingBlocks-class.Rd | 2 man/MovingBlocks-constructor.Rd | 2 man/QRegEstimator-class.Rd | 4 man/QRegEstimator-constructor.Rd | 2 man/QSpecQuantity-class.Rd | 2 man/QuantilePG-class.Rd | 10 man/QuantilePG-constructor.Rd | 4 man/QuantileSD-class.Rd | 8 man/QuantileSD-constructor.Rd | 4 man/SmoothedPG-class.Rd | 4 man/SmoothedPG-constructor.Rd | 2 man/SpecDistrWeight-class.Rd | 2 man/SpecDistrWeight-constructor.Rd | 2 man/Weight-class.Rd | 2 man/closest.pos.Rd | 2 man/data-sp500.Rd | 2 man/data-wheatprices.Rd | 2 man/frequenciesValidator.Rd | 4 man/generics-accessors.Rd | 4 man/generics-associations.Rd | 4 man/generics-functions.Rd | 4 man/getB-FreqRep.Rd | 2 man/getB-LagOperator.Rd | 2 man/getBootPos-FreqRep.Rd | 2 man/getBootPos-LagOperator.Rd | 2 man/getBw-KernelWeight.Rd | 2 man/getBw-LagKernelWeight.Rd | 2 man/getCoherency-QuantileSD.Rd | 2 man/getCoherency-SmoothedPG.Rd | 2 man/getCoherencySdNaive-SmoothedPG.Rd | 7 man/getDescr-Weight.Rd | 2 man/getFreqRep-QuantilePG.Rd | 2 man/getFrequencies-FreqRep.Rd | 4 man/getFrequencies-QSpecQuantity.Rd | 2 man/getIsRankBased-FreqRep.Rd | 2 man/getIsRankBased-LagOperator.Rd | 2 man/getLagOperator-LagEstimator.Rd | 2 man/getLevels-FreqRep.Rd | 4 man/getLevels-LagOperator.Rd | 2 man/getLevels-QSpecQuantity.Rd | 2 man/getMaxLag-LagOperator.Rd | 2 man/getMeanPG-QuantileSD.Rd | 2 man/getN-QuantileSD.Rd | 2 man/getParallel-QRegEstimator.Rd | 2 man/getPointwiseCIs-LagEstimator.Rd | 4 man/getPointwiseCIs-SmoothedPG.Rd | 6 man/getPositions-MovingBlocks.Rd | 2 man/getQuantilePG-QuantileSD.Rd | 4 man/getQuantilePG-SmoothedPG.Rd | 2 man/getQuantileSD-IntegrQuantileSD.Rd | 2 man/getR-QuantileSD.Rd | 2 man/getSdBoot-LagEstimator.Rd | 2 man/getSdBoot-SmoothedPG.Rd | 2 man/getSdNaive-LagEstimator.Rd | 8 man/getSdNaive-SmoothedPG.Rd | 2 man/getStdError-QuantileSD.Rd | 2 man/getTs-QuantileSD.Rd | 2 man/getType-QuantileSD.Rd | 2 man/getValues-FreqRep.Rd | 4 man/getValues-IntegrQuantileSD.Rd | 2 man/getValues-KernelWeight.Rd | 2 man/getValues-LagEstimator.Rd | 2 man/getValues-LagKernelWeight.Rd | 2 man/getValues-LagOperator.Rd | 2 man/getValues-QuantilePG.Rd | 2 man/getValues-QuantileSD.Rd | 2 man/getValues-SmoothedPG.Rd | 2 man/getValues-SpecDistrWeight.Rd | 6 man/getW-KernelWeight.Rd | 2 man/getW-LagKernelWeight.Rd | 2 man/getWeight-LagEstimator.Rd | 2 man/getWeight-SmoothedPG.Rd | 2 man/getWnj-KernelWeight.Rd | 4 man/getY-FreqRep.Rd | 4 man/increasePrecision-QuantileSD.Rd | 4 man/is.wholenumber.Rd | 4 man/kernels.Rd | 2 man/lenTS.Rd | 4 man/plot-FreqRep.Rd | 4 man/plot-IntegrQuantileSD.Rd | 2 man/plot-KernelWeight.Rd | 2 man/plot-LagEstimator.Rd | 8 man/plot-LagKernelWeight.Rd | 4 man/plot-LagOperator.Rd | 2 man/plot-QuantilePG.Rd | 2 man/plot-QuantileSD.Rd | 2 man/plot-SmoothedPG.Rd | 2 man/plot-SpecDistrWeight.Rd | 2 man/quantspec-defunct.Rd | 2 man/quantspec-package.Rd | 22 man/timeSeriesValidator.Rd | 2 man/ts-models-AR1.Rd | 6 man/ts-models-AR2.Rd | 2 man/ts-models-ARCH1.Rd | 3 man/ts-models-QAR1.Rd | 2 man/ts-models.Rd | 6 src/computeCoherency.cpp | 2 src/computeSdNaive.cpp | 2 vignettes/quantspec-refs.bib | 56 +- vignettes/quantspec.Rnw | 799 ++++++++++++++++++++-------------- 132 files changed, 1421 insertions(+), 1053 deletions(-)
Title: Alternative Meta-Analysis Methods
Description: Provides alternative statistical methods for meta-analysis, including new heterogeneity tests and measures that are robust to outliers, and measures of publication bias.
Author: Lifeng Lin and Haitao Chu
Maintainer: Lifeng Lin <linl@umn.edu>
Diff between altmeta versions 1.0 dated 2016-02-29 and 2.0 dated 2016-03-27
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++++++-- NAMESPACE | 4 ++-- R/metapb.R |only data/ha.rda |only data/lcj.rda |only data/slf.rda |only man/ha.Rd |only man/lcj.Rd |only man/metapb.Rd |only man/slf.Rd |only 11 files changed, 17 insertions(+), 9 deletions(-)
Title: Finding Files in Project Subdirectories
Description: Robust, reliable and flexible paths to files below a
project root. The 'root' of a project is defined as a directory
that matches a certain criterion, e.g., it contains a certain
regular file.
Author: Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between rprojroot versions 1.0 dated 2016-03-26 and 1.0-1 dated 2016-03-27
rprojroot-1.0-1/rprojroot/DESCRIPTION | 6 +++--- rprojroot-1.0-1/rprojroot/MD5 | 20 ++------------------ rprojroot-1.0-1/rprojroot/NEWS.md | 2 +- rprojroot-1.0/rprojroot/inst/NEWS.Rd |only rprojroot-1.0/rprojroot/inst/staticdocs |only rprojroot-1.0/rprojroot/inst/web |only 6 files changed, 6 insertions(+), 22 deletions(-)
Title: Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
Description: Computes individual causes of death and population cause-specific mortality fractions using the 'InSilicoVA' algorithm. It uses data derived from verbal autopsy (VA) interviews, in a format similar to the input of the widely used 'InterVA4' method. This package provides general model fitting and customization for 'InSilicoVA' algorithm and basic graphical visualization of the output.
Author: Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li <lizehang@uw.edu>
Diff between InSilicoVA versions 1.1 dated 2016-03-10 and 1.1.1 dated 2016-03-27
DESCRIPTION | 10 +++---- MD5 | 25 +++++++++--------- NAMESPACE | 1 R/get_indiv.r | 65 +++++++++++++++++++++++++++++++++++++++++------- R/insilico_core.r | 2 - R/insilico_standard.r | 4 +- R/insilico_train.r | 2 - R/report.r | 15 +++++++++-- man/get.indiv.Rd | 19 +++++++------- man/insilico.Rd | 4 +- man/insilico.fit.Rd | 2 - man/insilico.train.Rd | 4 +- man/summary.insilico.Rd | 3 ++ man/updateIndiv.Rd |only 14 files changed, 110 insertions(+), 46 deletions(-)
Title: Expanding Ploidy and Allele-Frequency on Nested Subpopulations
Description: Expanding Ploidy and Allele Frequency on Nested Subpopulations (expands) characterizes coexisting subpopulations in a single tumor sample using copy number and allele frequencies derived from exome- or whole genome sequencing input data (http://www.ncbi.nlm.nih.gov/pubmed/24177718). The model detects coexisting genotypes by leveraging run-specific tradeoffs between depth of coverage and breadth of coverage. This package predicts the number of clonal expansions, the size of the resulting subpopulations in the tumor bulk, the mutations specific to each subpopulation, tumor purity and phylogeny. The main function runExPANdS() provides the complete functionality needed to predict coexisting subpopulations from single nucleotide variations (SNVs) and associated copy numbers. The robustness of subpopulation predictions increases with the number of mutations provided. It is recommended that at least 200 mutations are used as input to obtain stable results. Updates in version 1.7 include: (1) Higher subpopulation detection specificity, in particular for small subpopulations. (2) Higher accuracy for mutation assignment to subpopulations. (3) Whenever possible, SNVs are assigned not only to the subpopulation in which they first occurred, but also to descending subpopulations. (4) Two additional output files are created: subpopulation specific ploidy matrix and a summary file of all detected subpopulations, including information on the inferred ancestor and the closest descendant of each subpopulation. (5) New subpopulation plotting options (function plotSPs). (6) New phylogeny plotting option: user can choose between consensus and germline population to be included as control. (7) 50 simulated samples of various genetic complexities and measurement precision included for user testing. Special thanks to Dr. Ryan Morin for his contributions that have led to higher accuracy measures during simulations for mutation assignment to subpopulations, as well as advanced visualization features of assigned mutations. Further documentation and FAQ available at http://dna-discovery.stanford.edu/software/expands.
Author: Noemi Andor
Maintainer: Noemi Andor <expands.r@gmail.com>
Diff between expands versions 1.7 dated 2016-03-26 and 1.7.1 dated 2016-03-27
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/runExPANdS.R | 1 + inst/doc/expands.pdf |binary 4 files changed, 9 insertions(+), 8 deletions(-)
Title: Nested Block Designs for Unstructured Treatments
Description: Constructs nested and crossed block designs
for unstructured treatment sets with arbitrary replication not necessarily all equal.
Blocks can be nested to any required depth of nesting and blocks are optimized
hierarchically from the top down with successive nested blocks strata optimized within
the levels of all preceding blocks strata. Block sizes are all equal in any one stratum if the number
of blocks in that stratum exactly divides the number of plots, otherwise they differ by at most one plot.
The design output is a data table showing a randomised allocation of treatments to blocks together with
plans showing the allocation of treatments to blocks for each block in the bottom stratum of the design.
D and A-efficiency factors are shown for each stratum together with A-efficiency upper bounds,
where available.
Author: R. N. Edmondson
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 2.0 dated 2016-02-07 and 2.1 dated 2016-03-27
DESCRIPTION | 8 MD5 | 6 R/blocks.r | 602 ++++++++++++++++++++++++++++++---------------------------- man/blocks.Rd | 54 ++--- 4 files changed, 349 insertions(+), 321 deletions(-)
Title: Replicate Tariff Method for Verbal Autopsy
Description: Implement the Tariff algorithm for coding cause-of-death from verbal autopsies. The Tariff method was originally proposed in James et al (2011) <DOI:10.1186/1478-7954-9-31> and later refined as Tariff 2.0 in Serina, et al. (2015) <DOI:10.1186/s12916-015-0527-9>. Note that this package was not developed by authors affiliated with the Institute for Health Metrics and Evaluation and thus unintentional discrepancies may exist between the this implementation and the implementation available from IHME.
Author: Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li <lizehang@uw.edu>
Diff between Tariff versions 1.0.1 dated 2016-03-08 and 1.0.2 dated 2016-03-27
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/Tariff.r | 18 +++++++++++------- R/zzz.R | 7 ++++++- data/RandomVA3.rda |binary man/tariff.Rd | 7 ++++--- 6 files changed, 31 insertions(+), 21 deletions(-)
Title: Tools for Simulating and Plotting Quantities of Interest
Estimated from Cox Proportional Hazards Models
Description: Simulates and plots quantities of interest (relative
hazards, first differences, and hazard ratios) for linear coefficients,
multiplicative interactions, polynomials, penalised splines, and
non-proportional hazards, as well as stratified survival curves from Cox
Proportional Hazard models. It also simulates and plots marginal effects
for multiplicative interactions.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between simPH versions 1.3.5 dated 2015-12-15 and 1.3.7 dated 2016-03-27
DESCRIPTION | 10 +++++----- MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 2 ++ NEWS | 16 ++++++++++++++-- R/IntervalConstrict.R | 4 ++-- R/MinMaxLines.R | 36 ++++++++++++++++++------------------ R/coxsimInteract.R | 16 ++++++++-------- R/coxsimLinear.R | 22 ++++++++++++---------- R/coxsimPoly.R | 14 +++++++++----- R/coxsimSpline.R | 10 +++++----- R/coxsimtvc.R | 14 ++++++++------ R/simGG.siminteract.R | 12 ++++++------ R/simGG.simlinear.R | 12 ++++++------ R/simGG.simpoly.R | 12 ++++++------ R/simGG.simtvc.R | 12 ++++++------ README.md | 10 +++++----- build/vignette.rds |binary man/coxsimPoly.Rd | 2 +- 18 files changed, 130 insertions(+), 108 deletions(-)
Title: Perform Common JavaScript Operations in Shiny Apps using Plain R
Code
Description: Perform common JavaScript operations in Shiny applications without
having to know any JavaScript. Examples include: hiding an element, disabling
an input, resetting an input back to its original value, delaying code execution
by a few seconds, and many more useful functions. 'shinyjs' also includes
a colour picker widget, a colour picker RStudio addin, and can also be used to
easily run your own custom JavaScript functions from R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between shinyjs versions 0.5.0 dated 2016-03-19 and 0.5.2 dated 2016-03-27
shinyjs-0.5.0/shinyjs/inst/gadgets/colourpicker/helpers.R |only shinyjs-0.5.0/shinyjs/inst/gadgets/colourpicker/server.R |only shinyjs-0.5.0/shinyjs/inst/gadgets/colourpicker/ui.R |only shinyjs-0.5.0/shinyjs/inst/gadgets/colourpicker/www |only shinyjs-0.5.2/shinyjs/DESCRIPTION | 6 shinyjs-0.5.2/shinyjs/MD5 | 51 - shinyjs-0.5.2/shinyjs/NAMESPACE | 2 shinyjs-0.5.2/shinyjs/NEWS.md | 12 shinyjs-0.5.2/shinyjs/R/colourInput.R | 35 - shinyjs-0.5.2/shinyjs/R/colourPickerGadget.R | 271 +++++++++- shinyjs-0.5.2/shinyjs/R/colourPickerGadgetUtils.R |only shinyjs-0.5.2/shinyjs/README.md | 89 +-- shinyjs-0.5.2/shinyjs/inst/doc/overview.Rmd | 50 + shinyjs-0.5.2/shinyjs/inst/doc/overview.html | 48 - shinyjs-0.5.2/shinyjs/inst/examples/colourInput/app.R | 27 shinyjs-0.5.2/shinyjs/inst/examples/colourInput/www/app.css | 1 shinyjs-0.5.2/shinyjs/inst/gadgets/colourpicker/css |only shinyjs-0.5.2/shinyjs/inst/gadgets/colourpicker/img |only shinyjs-0.5.2/shinyjs/inst/gadgets/colourpicker/js |only shinyjs-0.5.2/shinyjs/inst/img/colourpickerscrnshot.png |only shinyjs-0.5.2/shinyjs/inst/rstudio/addins.dcf | 2 shinyjs-0.5.2/shinyjs/inst/srcjs/input_binding_colour.js | 6 shinyjs-0.5.2/shinyjs/inst/srcjs/shinyjs-default-funcs.js | 2 shinyjs-0.5.2/shinyjs/inst/www/shared/colourpicker/css/colourpicker.css | 7 shinyjs-0.5.2/shinyjs/inst/www/shared/colourpicker/css/colourpicker.min.css | 2 shinyjs-0.5.2/shinyjs/inst/www/shared/colourpicker/js/colourpicker.js | 37 + shinyjs-0.5.2/shinyjs/inst/www/shared/colourpicker/js/colourpicker.min.js | 2 shinyjs-0.5.2/shinyjs/man/colourInput.Rd | 18 shinyjs-0.5.2/shinyjs/man/colourPicker.Rd | 8 shinyjs-0.5.2/shinyjs/man/updateColourInput.Rd | 9 shinyjs-0.5.2/shinyjs/vignettes/overview.Rmd | 50 + 31 files changed, 549 insertions(+), 186 deletions(-)
Title: Robust Periodogram and Periodicity Detection Methods
Description: Calculates periodograms based on (robustly) fitting periodic functions to light curves (irregularly observed time series, possibly with measurement accuracies, occurring in astroparticle physics). Three main functions are included: RobPer() calculates the periodogram. Outlying periodogram bars (indicating a period) can be detected with betaCvMfit(). Artificial light curves can be generated using the function tsgen(). For more details see the corresponding article: Thieler, Fried and Rathjens (2016), Journal of Statistical Software 69(9), 1-36, <doi:10.18637/jss.v069.i09>.
Author: Anita M. Thieler [aut],
Jonathan Rathjens [aut, cre],
Roland Fried [aut],
Brenton R. Clarke [ctb] (function betaCvMfit()),
Uwe Ligges [ctb] (function TK95()),
Matias Salibian-Barrera [ctb] (functions FastS() and FastTau()),
Gert Willems [ctb] (function FastTau()),
Victor Yohai [ctb] (function FastS())
Maintainer: Jonathan Rathjens <jonathan.rathjens@tu-dortmund.de>
Diff between RobPer versions 1.2.1 dated 2015-03-02 and 1.2.2 dated 2016-03-27
RobPer-1.2.1/RobPer/inst/doc/RobPer_Vignette.R |only RobPer-1.2.1/RobPer/inst/doc/RobPer_Vignette.Rnw |only RobPer-1.2.1/RobPer/inst/doc/RobPer_Vignette.pdf |only RobPer-1.2.1/RobPer/vignettes/RobPer_Art.bib |only RobPer-1.2.1/RobPer/vignettes/RobPer_Vignette.Rnw |only RobPer-1.2.1/RobPer/vignettes/diagbox.sty |only RobPer-1.2.1/RobPer/vignettes/subfigure.sty |only RobPer-1.2.2/RobPer/DESCRIPTION | 24 ++- RobPer-1.2.2/RobPer/MD5 | 49 +++---- RobPer-1.2.2/RobPer/NAMESPACE | 7 - RobPer-1.2.2/RobPer/build/vignette.rds |binary RobPer-1.2.2/RobPer/inst/CITATION |only RobPer-1.2.2/RobPer/inst/doc/RobPer_vignette.R |only RobPer-1.2.2/RobPer/inst/doc/RobPer_vignette.Rnw |only RobPer-1.2.2/RobPer/inst/doc/RobPer_vignette.pdf |only RobPer-1.2.2/RobPer/man/FastS.Rd | 144 +++++++++++----------- RobPer-1.2.2/RobPer/man/FastTau.Rd | 8 - RobPer-1.2.2/RobPer/man/Mrk421.Rd | 144 +++++++++++----------- RobPer-1.2.2/RobPer/man/Mrk501.Rd | 144 +++++++++++----------- RobPer-1.2.2/RobPer/man/RobPer-package.rd | 44 +++--- RobPer-1.2.2/RobPer/man/RobPer.Rd | 56 ++++---- RobPer-1.2.2/RobPer/man/TK95.Rd | 10 - RobPer-1.2.2/RobPer/man/TK95_uneq.Rd | 10 - RobPer-1.2.2/RobPer/man/Xgen.Rd | 4 RobPer-1.2.2/RobPer/man/betaCvMfit.Rd | 18 +- RobPer-1.2.2/RobPer/man/disturber.Rd | 4 RobPer-1.2.2/RobPer/man/lc_noise.Rd | 4 RobPer-1.2.2/RobPer/man/sampler.Rd | 4 RobPer-1.2.2/RobPer/man/signalgen.Rd | 4 RobPer-1.2.2/RobPer/man/tsgen.Rd | 4 RobPer-1.2.2/RobPer/vignettes/RobPer_vignette.Rnw |only RobPer-1.2.2/RobPer/vignettes/v69i09.bib |only 32 files changed, 344 insertions(+), 338 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.6.3) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and Expat) are provided on CRAN.
Author: Roger Bivand [cre, aut],
Tim Keitt [aut],
Barry Rowlingson [aut],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.1-3 dated 2015-12-21 and 1.1-7 dated 2016-03-27
ChangeLog | 59 ++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 10 +++--- MD5 | 44 ++++++++++++++--------------- NAMESPACE | 2 - R/ogr.R | 17 ++--------- R/ogr_sp.R | 46 +++++++++++++++++-------------- R/ogr_write.R | 10 ++++++ build/vignette.rds |binary configure | 18 ++++++------ inst/ChangeLog | 59 ++++++++++++++++++++++++++++++++++++++++ inst/SVN_VERSION | 2 - inst/doc/OGR_shape_encoding.pdf |binary inst/pictures/Rlogo.jpg |binary inst/pictures/logo.jpg |binary man/readOGR.Rd | 16 ++++++---- man/showWKT.Rd | 5 +++ man/writeOGR.Rd | 7 ++++ src/Makevars.in | 1 src/Makevars.win | 2 - src/init.c | 1 src/ogr_proj.cpp | 27 ++++++++++++++++++ src/ogrsource.cpp | 13 +++++--- src/rgdal.h | 1 23 files changed, 253 insertions(+), 87 deletions(-)
Title: Finite Mixture Modeling, Clustering & Classification
Description: R functions for random univariate and multivariate finite mixture model generation, estimation, clustering and classification. Variables can be continuous, discrete, independent or dependent and may follow normal, lognormal, Weibull, gamma, binomial, Poisson or Dirac parametric families.
Author: Marko Nagode [aut, cre]
Maintainer: Marko Nagode <marko.nagode@fs.uni-lj.si>
Diff between rebmix versions 2.8.0 dated 2016-03-25 and 2.8.1 dated 2016-03-27
DESCRIPTION | 6 +++--- MD5 | 32 ++++++++++++++++---------------- R/AllClasses.R | 3 ++- R/RCLRMIX.R | 2 +- R/RCLSMIX.R | 2 +- R/REBMIX.R | 2 +- R/RNGMIX.R | 2 +- inst/NEWS.Rd | 6 ++++++ inst/doc/rebmix.R | 8 ++++---- inst/doc/rebmix.Rnw | 10 +++++----- inst/doc/rebmix.pdf |binary src/base.cpp | 2 +- src/rebmixf.cpp | 2 +- src/rebmvnormf.cpp | 6 +++--- src/rngmixf.cpp | 2 +- vignettes/rebmix.Rnw | 10 +++++----- vignettes/rebmix.bib | 4 ++-- 17 files changed, 53 insertions(+), 46 deletions(-)
Title: Partition-Assisted Clustering
Description: Implements Partition-Assisted Clustering, which utilizes a collection of partition based nonparametric density estimation techniques to improve the robustness and accuracy of downstream clustering.
The package also provides functions for effectively visualizing the clustering results.
It is particularly useful for finding and visualizing subpopulations in single-cell data analysis.
Author: Dangna Li, Henry Li
Maintainer: Dangna Li <ldangna@gmail.com>
Diff between PAC versions 1.0.0 dated 2016-03-25 and 1.0.1 dated 2016-03-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/PAC.R | 1 + configure.ac | 17 +++++++++++++++++ 4 files changed, 24 insertions(+), 6 deletions(-)
Title: 'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
Description: Provides 'ggplot2' 'stats' that estimate seasonally adjusted series
and rolling summaries such as rolling average on the fly for time series.
Author: Peter Ellis [aut, cre],
Christophe Sax [ctb]
Maintainer: Peter Ellis <peter.ellis2013nz@gmail.com>
Diff between ggseas versions 0.3.0 dated 2016-03-14 and 0.4.0 dated 2016-03-27
DESCRIPTION | 14 ++++++++---- MD5 | 21 ++++++++++-------- R/decompose-seasonal.R | 25 +++++++++++++++++---- R/ggsdc.R | 56 +++++++++++++++++++++++++++++++++---------------- R/stl-seasonal.R | 24 ++++++++++++++++----- R/x13-seasonal.R | 53 +++++++++++++++++++++++++++++++++++++--------- man/ggsdc.Rd | 17 +++++++------- man/stat_decomp.Rd | 14 ++++++------ man/stat_seas.Rd | 29 ++++++++++++++++--------- man/stat_stl.Rd | 12 +++++----- tests |only 11 files changed, 182 insertions(+), 83 deletions(-)
Title: Tools for Easily Combining and Cleaning Data Sets
Description: Tools for combining and cleaning data sets, particularly
with grouped and time series data.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between DataCombine versions 0.2.19 dated 2016-03-07 and 0.2.20 dated 2016-03-27
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS | 9 +++++++++ R/DropNA.R | 10 +++++++++- R/slide.R | 7 +++---- R/utils.R | 15 ++++++++++----- man/DropNA.Rd | 6 +++++- man/dMerge.Rd | 7 ++++--- 9 files changed, 54 insertions(+), 27 deletions(-)