Mon, 28 Mar 2016

Package textreuse updated to version 0.1.3 with previous version 0.1.2 dated 2015-11-06

Title: Detect Text Reuse and Document Similarity
Description: Tools for measuring similarity among documents and detecting passages which have been reused. Implements shingled n-gram, skip n-gram, and other tokenizers; similarity/dissimilarity functions; pairwise comparisons; minhash and locality sensitive hashing algorithms; and a version of the Smith-Waterman local alignment algorithm suitable for natural language.
Author: Lincoln Mullen [aut, cre]
Maintainer: Lincoln Mullen <lincoln@lincolnmullen.com>

Diff between textreuse versions 0.1.2 dated 2015-11-06 and 0.1.3 dated 2016-03-28

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 18 files changed, 80 insertions(+), 84 deletions(-)

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Package readxl updated to version 0.1.1 with previous version 0.1.0 dated 2015-04-14

Title: Read Excel Files
Description: Import excel files into R. Supports '.xls' via the embedded 'libxls' C library (http://sourceforge.net/projects/libxls/) and '.xlsx' via the embedded 'RapidXML' C++ library (http://rapidxml.sourceforge.net). Works on Windows, Mac and Linux without external dependencies.
Author: Hadley Wickham [aut, cre], RStudio [cph] (Copyright holder of all R code and all C/C++ code without explicit copyright attribution), Marcin Kalicinski [ctb, cph] (Author of included RapidXML code), Komarov Valery [ctb, cph] (Author of included libxls code), Christophe Leitienne [ctb, cph] (Author of included libxls code), Bob Colbert [ctb, cph] (Author of included libxls code), David Hoerl [ctb, cph] (Author of included libxls code)
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between readxl versions 0.1.0 dated 2015-04-14 and 0.1.1 dated 2016-03-28

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New package rmcfs with initial version 1.1.0
Package: rmcfs
Title: The MCFS-ID Algorithm for Feature Selection and Interdependency Discovery
Version: 1.1.0
Date: 2016-03-28
Authors@R: c(person('Michal', 'Draminski', role = c('aut', 'cre'), email = 'mdramins@ipipan.waw.pl'), person('Jacek', 'Koronacki', role = c('aut'), email = 'jacek.koronacki@ipipan.waw.pl'), person('Julian', 'Zubek', role = c('ctb'), email = 'j.zubek@phd.ipipan.waw.pl'))
Depends: rJava, R (>= 2.10)
Imports: yaml, ggplot2, reshape2, dplyr, igraph
SystemRequirements: Java
Description: MCFS-ID (Monte Carlo Feature Selection and Interdependency Discovery) is a Monte Carlo method-based tool for feature selection. It also allows for the discovery of interdependencies between the relevant features. MCFS-ID is particularly suitable for the analysis of high-dimensional, 'small n large p' transactional and biological data.
License: GPL-3 + file LICENSE
URL: http://www.ipipan.eu/staff/m.draminski/mcfs.htm
LazyData: yes
NeedsCompilation: no
Packaged: 2016-03-28 18:36:39 UTC; mdraminski
Author: Michal Draminski [aut, cre], Jacek Koronacki [aut], Julian Zubek [ctb]
Maintainer: Michal Draminski <mdramins@ipipan.waw.pl>
Repository: CRAN
Date/Publication: 2016-03-28 23:29:35

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Package packrat updated to version 0.4.7-1 with previous version 0.4.7 dated 2016-03-17

Title: A Dependency Management System for Projects and their R Package Dependencies
Description: Manage the R packages your project depends on in an isolated, portable, and reproducible way.
Author: Kevin Ushey, Jonathan McPherson, Joe Cheng, Aron Atkins, JJ Allaire
Maintainer: Kevin Ushey <kevin@rstudio.com>

Diff between packrat versions 0.4.7 dated 2016-03-17 and 0.4.7-1 dated 2016-03-28

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Package nhanesA updated to version 0.6.3.1 with previous version 0.6.3 dated 2016-02-25

Title: NHANES Data Retrieval
Description: Utility to retrieve data from the National Health and Nutrition Examination Survey (NHANES).
Author: Christopher Endres
Maintainer: Christopher Endres <cjendres1@gmail.com>

Diff between nhanesA versions 0.6.3 dated 2016-02-25 and 0.6.3.1 dated 2016-03-28

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Package httpcache updated to version 0.1.4 with previous version 0.1.2 dated 2016-02-23

Title: Query Cache for HTTP Clients
Description: In order to improve performance for HTTP API clients, 'httpcache' provides simple tools for caching and invalidating cache. It includes the HTTP verb functions GET, PUT, PATCH, POST, and DELETE, which are drop-in replacements for those in the 'httr' package. These functions are cache-aware and provide default settings for cache invalidation suitable for RESTful APIs; the package also enables custom cache-management strategies. Finally, 'httpcache' includes a basic logging framework to facilitate the measurement of HTTP request time and cache performance.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal.p.richardson@gmail.com>

Diff between httpcache versions 0.1.2 dated 2016-02-23 and 0.1.4 dated 2016-03-28

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New package Greg with initial version 1.2
Package: Greg
Version: 1.2
Date: 2016-03-28
Title: Regression Helper Functions
Maintainer: Max Gordon <max@gforge.se>
Authors@R: c(person("Max", "Gordon", email = "max@gforge.se", role = c("aut", "cre")), person("Reinhard", "Seifert", role = "aut", comment = "Author of original plotHR"))
Description: Methods for manipulating regression models and for describing these in a style adapted for medical journals. Contains functions for generating an HTML table with crude and adjusted estimates, plotting hazard ratio, plotting model estimates and confidence intervals using forest plots, extending this to comparing multiple models in a single forest plots. In addition to the descriptives methods, there are addons for the robust covariance matrix provided by the sandwich package, a function for adding non-linearities to a model, and a wrapper around the Epi package's Lexis functions for time-spliting a dataset when modeling non-proportional hazards in Cox regressions.
License: GPL (>= 3)
URL: http://gforge.se
Biarch: yes
Imports: Hmisc, stringr, rms, sandwich, stats, nlme, methods, htmlTable, magrittr, knitr, Epi, utils, graphics, grDevices
Depends: forestplot, Gmisc (>= 1.0.3)
Suggests: boot, testthat, cmprsk, survival, dplyr, ggplot2
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-03-28 19:20:50 UTC; max
Author: Max Gordon [aut, cre], Reinhard Seifert [aut] (Author of original plotHR)
Repository: CRAN
Date/Publication: 2016-03-28 23:24:58

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Package extremogram updated to version 1.0.1 with previous version 1.0.0 dated 2015-09-29

Title: Estimation of Extreme Value Dependence for Time Series Data
Description: Estimation of the sample univariate, cross and return time extremograms. The package can also add empirical confidence bands to each of the extremogram plots via a permutation procedure under the assumption that the data are independent. Finally, the stationary bootstrap allows us to construct credible confidence bands for the extremograms.
Author: Nadezda Frolova, Ivor Cribben
Maintainer: Nadezda Frolova <nfrolova@ualberta.ca>

Diff between extremogram versions 1.0.0 dated 2015-09-29 and 1.0.1 dated 2016-03-28

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Package EffectLiteR updated to version 0.4-2 with previous version 0.4-1 dated 2015-10-18

Title: Average and Conditional Effects
Description: Use structural equation modeling to estimate average and conditional effects of a treatment variable on an outcome variable, taking into account multiple continuous and categorical covariates.
Author: Axel Mayer [aut, cre], Lisa Dietzfelbinger [ctb]
Maintainer: Axel Mayer <amayer2010@gmail.com>

Diff between EffectLiteR versions 0.4-1 dated 2015-10-18 and 0.4-2 dated 2016-03-28

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Package dataRetrieval updated to version 2.5.3 with previous version 2.5.2 dated 2016-03-04

Title: Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey (USGS) and U.S. Environmental Protection Agency (EPA) water quality and hydrology data from web services. USGS web services are discovered from the National Water Information System (NWIS) tools. Both EPA and USGS water quality data are obtained from the Water Quality Portal.
Author: Robert Hirsch [aut], Laura DeCicco [aut, cre], David Lorenz [aut], Jordan Read [ctb], Lindsay Carr [ctb]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>

Diff between dataRetrieval versions 2.5.2 dated 2016-03-04 and 2.5.3 dated 2016-03-28

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Package circlize updated to version 0.3.5 with previous version 0.3.4 dated 2015-12-22

Title: Circular Visualization
Description: Circular layout is an efficient way for the visualization of huge amounts of information. Here the circlize package provides an implementation of circular layout generation in R as well as an enhancement of available software. The flexibility of this package is based on the usage of low-level graphics functions such that self-defined high-level graphics can be easily implemented by users for specific purposes. Together with the seamless connection between the powerful computational and visual environment in R, circlize gives users more convenience and freedom to design figures for better understanding complex patterns behind multi-dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>

Diff between circlize versions 0.3.4 dated 2015-12-22 and 0.3.5 dated 2016-03-28

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Package SWMPr updated to version 2.1.5 with previous version 2.1.4 dated 2015-10-07

Title: Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Description: Tools for retrieving, organizing, and analyzing environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System. These tools address common challenges associated with continuous time series data for environmental decision making.
Author: Marcus W. Beck [aut, cre]
Maintainer: Marcus W. Beck <mbafs2012@gmail.com>

Diff between SWMPr versions 2.1.4 dated 2015-10-07 and 2.1.5 dated 2016-03-28

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Package RVAideMemoire updated to version 0.9-54 with previous version 0.9-53 dated 2016-02-28

Title: Diverse Basic Statistical and Graphical Functions
Description: Contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé <mx.herve@gmail.com>

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Package rappdirs updated to version 0.3.1 with previous version 0.3 dated 2014-09-02

Title: Application Directories: Determine Where to Save Data, Caches, and Logs
Description: An easy way to determine which directories on the users computer you should use to save data, caches and logs. A port of Python's 'Appdirs' (\url{https://github.com/ActiveState/appdirs}) to R.
Author: Hadley Wickham [trl, cre, cph], RStudio [cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut], Gabor Csardi [ctb], Gregory Jefferis [ctb]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between rappdirs versions 0.3 dated 2014-09-02 and 0.3.1 dated 2016-03-28

 rappdirs-0.3.1/rappdirs/DESCRIPTION                 |   19 ++++----
 rappdirs-0.3.1/rappdirs/LICENSE                     |    2 
 rappdirs-0.3.1/rappdirs/MD5                         |   22 ++++-----
 rappdirs-0.3.1/rappdirs/NAMESPACE                   |    2 
 rappdirs-0.3.1/rappdirs/NEWS.md                     |only
 rappdirs-0.3.1/rappdirs/man/app_dir.Rd              |    5 +-
 rappdirs-0.3.1/rappdirs/man/rappdirs-package.Rd     |   46 ++++++++++----------
 rappdirs-0.3.1/rappdirs/man/site_data_dir.Rd        |   19 ++++----
 rappdirs-0.3.1/rappdirs/man/user_cache_dir.Rd       |   15 +++---
 rappdirs-0.3.1/rappdirs/man/user_data_dir.Rd        |   21 ++++-----
 rappdirs-0.3.1/rappdirs/man/user_log_dir.Rd         |   17 +++----
 rappdirs-0.3.1/rappdirs/tests/testthat/test-utils.r |    1 
 rappdirs-0.3/rappdirs/NEWS                          |only
 13 files changed, 88 insertions(+), 81 deletions(-)

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Package tergm updated to version 3.4.0 with previous version 3.3.1 dated 2015-10-25

Title: Fit, Simulate and Diagnose Models for Network Evolution Based on Exponential-Family Random Graph Models
Description: An integrated set of extensions to the 'ergm' package to analyze and simulate network evolution based on exponential-family random graph models (ERGM). 'tergm' is a part of the 'statnet' suite of packages for network analysis.
Author: Pavel N. Krivitsky [aut, cre], Mark S. Handcock [aut, ths], David R. Hunter [ctb], Steven M. Goodreau [ctb, ths], Martina Morris [ctb, ths], Nicole Bohme Carnegie [ctb], Carter T. Butts [ctb], Ayn Leslie-Cook [ctb], Skye Bender-deMoll [ctb], Li Wang [ctb], Kirk Li [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>

Diff between tergm versions 3.3.1 dated 2015-10-25 and 3.4.0 dated 2016-03-28

 tergm-3.3.1/tergm/tests/examples.R             |only
 tergm-3.4.0/tergm/DESCRIPTION                  |   12 +--
 tergm-3.4.0/tergm/LICENSE                      |    2 
 tergm-3.4.0/tergm/MD5                          |   24 +++---
 tergm-3.4.0/tergm/NAMESPACE                    |   15 ++-
 tergm-3.4.0/tergm/R/stergm.CMLE.R              |    8 +-
 tergm-3.4.0/tergm/R/stergm.EGMME.GD.R          |    2 
 tergm-3.4.0/tergm/R/stergm.EGMME.SA.R          |   10 +-
 tergm-3.4.0/tergm/R/zzz.R                      |    4 -
 tergm-3.4.0/tergm/inst/NEWS.Rd                 |   50 ++++++++----
 tergm-3.4.0/tergm/inst/doc/STERGM.pdf          |binary
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 14 files changed, 128 insertions(+), 103 deletions(-)

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Package shiny updated to version 0.13.2 with previous version 0.13.1 dated 2016-02-17

Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web applications with R. Automatic "reactive" binding between inputs and outputs and extensive pre-built widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre], Joe Cheng [aut], JJ Allaire [aut], Yihui Xie [aut], Jonathan McPherson [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/1.10.4/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Dave Gandy [ctb, cph] (Font-Awesome font), Brian Reavis [ctb, cph] (selectize.js library), Kristopher Michael Kowal [ctb, cph] (es5-shim library), es5-shim contributors [ctb, cph] (es5-shim library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), John Fraser [ctb, cph] (showdown.js library), John Gruber [ctb, cph] (showdown.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>

Diff between shiny versions 0.13.1 dated 2016-02-17 and 0.13.2 dated 2016-03-28

 DESCRIPTION                  |    8 ++++----
 MD5                          |   10 +++++-----
 NEWS                         |    5 +++++
 inst/doc/events.html         |   15 +++++++--------
 inst/www/shared/shiny.min.js |    2 +-
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 6 files changed, 28 insertions(+), 20 deletions(-)

More information about shiny at CRAN
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New package randstr with initial version 0.1.1
Package: randstr
Type: Package
Title: Generate Random Strings
Version: 0.1.1
Date: 2016-03-28
Author: Alan Gu
Maintainer: Alan Gu <alan.on.ca@gmail.com>
Description: Generate random strings of a dictated size of symbol set and distribution of the lengths of strings.
License: MIT + file LICENSE
LazyData: TRUE
Depends: truncnorm, random, stringi
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-03-28 14:57:27 UTC; alano
Repository: CRAN
Date/Publication: 2016-03-28 17:13:41

More information about randstr at CRAN
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Package Matrix.utils updated to version 0.9.0 with previous version 0.5 dated 2015-12-15

Title: Data.frame-Like Operations on Sparse and Dense Matrix Objects
Description: Implements data manipulation methods such as cast, aggregate, and merge/join for Matrix and matrix-like objects.
Author: Craig Varrichio <canthony427@gmail.com>
Maintainer: Craig Varrichio <canthony427@gmail.com>

Diff between Matrix.utils versions 0.5 dated 2015-12-15 and 0.9.0 dated 2016-03-28

 DESCRIPTION             |   14 +-
 MD5                     |   15 +--
 NAMESPACE               |    3 
 R/Matrix.utils.R        |  235 ++++++++++++++++++++++++++++++++++++++----------
 man/Matrix.utils.Rd     |    6 -
 man/aggregate.Matrix.Rd |    2 
 man/dMcast.Rd           |    5 -
 man/merge.Matrix.Rd     |  104 ++++++++++++++-------
 man/rBind.fill.Rd       |only
 9 files changed, 287 insertions(+), 97 deletions(-)

More information about Matrix.utils at CRAN
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New package junr with initial version 0.1.0
Encoding: UTF-8
Package: junr
Type: Package
Title: Access Open Data Through the Junar API
Description: The Junar API is a commercial platform to organize and publish data <http://junar.com>. It has been used in a number of national and local government Open Data initiatives in Latin America and the USA. This package is a wrapper to make it easier to access data made public through the Junar API.
Version: 0.1.0
Date: 2016-03-28
Authors@R: c(person("Frans", "van Dunné", , "frans@ixpantia.com", c("aut", "cre")) )
BugReports: https://github.com/fvd/junr/issues
LazyData: TRUE
Depends: R (>= 3.0.0)
Imports: httr, jsonlite
Suggests: knitr, rmarkdown, testthat (>= 0.8.0)
VignetteBuilder: knitr
License: MIT + file LICENCE
URL: https://github.com/fvd/junr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-03-28 15:35:45 UTC; frans
Author: Frans van Dunné [aut, cre]
Maintainer: Frans van Dunné <frans@ixpantia.com>
Repository: CRAN
Date/Publication: 2016-03-28 18:08:23

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Package gdm updated to version 1.2.2 with previous version 1.2.0 dated 2016-03-23

Title: Functions for Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, and summarize Generalized Dissimilarity Models.
Author: Glenn Manion, Matthew Lisk, Simon Ferrier, Diego Nieto-Lugilde, Matthew C. Fitzpatrick
Maintainer: Matthew C. Fitzpatrick <mfitzpatrick@al.umces.edu>

Diff between gdm versions 1.2.0 dated 2016-03-23 and 1.2.2 dated 2016-03-28

 DESCRIPTION              |    8 ++++----
 MD5                      |    8 ++++----
 R/GDM_Table_Funcs.R      |   28 +++++++++++++++++-----------
 inst/doc/gdmVignette.pdf |binary
 src/Gdmlib.cpp           |    2 +-
 5 files changed, 26 insertions(+), 20 deletions(-)

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Package bigmemory updated to version 4.5.19 with previous version 4.5.18 dated 2016-03-08

Title: Manage Massive Matrices with Shared Memory and Memory-Mapped Files
Description: Create, store, access, and manipulate massive matrices. Matrices are allocated to shared memory and may use memory-mapped files. Packages 'biganalytics', 'bigtabulate', 'synchronicity', and 'bigalgebra' provide advanced functionality.
Author: Michael J. Kane <kaneplusplus@gmail.com>, John W. Emerson <jayemerson@gmail.com>, Peter Haverty <haverty.peter@gene.com>, and Charles Determan Jr. <cdetermanjr@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>

Diff between bigmemory versions 4.5.18 dated 2016-03-08 and 4.5.19 dated 2016-03-28

 DESCRIPTION        |   10 +++++-----
 MD5                |    4 ++--
 build/vignette.rds |binary
 3 files changed, 7 insertions(+), 7 deletions(-)

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Package rprojroot updated to version 1.0-2 with previous version 1.0-1 dated 2016-03-27

Title: Finding Files in Project Subdirectories
Description: Robust, reliable and flexible paths to files below a project root. The 'root' of a project is defined as a directory that matches a certain criterion, e.g., it contains a certain regular file.
Author: Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>

Diff between rprojroot versions 1.0-1 dated 2016-03-27 and 1.0-2 dated 2016-03-28

 rprojroot-1.0-1/rprojroot/R/zzz-autoroxy.R           |only
 rprojroot-1.0-2/rprojroot/DESCRIPTION                |    8 ++++----
 rprojroot-1.0-2/rprojroot/MD5                        |    7 +++----
 rprojroot-1.0-2/rprojroot/NEWS.md                    |   10 ++++++++++
 rprojroot-1.0-2/rprojroot/tests/testthat/test-make.R |    3 ++-
 5 files changed, 19 insertions(+), 9 deletions(-)

More information about rprojroot at CRAN
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Package NPC updated to version 1.1.0 with previous version 1.0.2 dated 2015-10-21

Title: Nonparametric Combination of Hypothesis Tests
Description: An implementation of nonparametric combination of hypothesis tests. This package performs nonparametric combination (Pesarin and Salmaso 2010), a permutation-based procedure for jointly testing multiple hypotheses. The tests are conducted under the global "sharp" null hypothesis of no effects, and the component tests are combined on the metric of their p-values. A key feature of nonparametric combination is that it accounts for the dependence among tests under the null hypothesis. In addition to the "NPC" function, which performs nonparametric combination itself, the package also contains a number of helper functions, many of which calculate a test statistic given an input of data.
Author: Devin Caughey [aut, cre]
Maintainer: Devin Caughey <devin.caughey@gmail.com>

Diff between NPC versions 1.0.2 dated 2015-10-21 and 1.1.0 dated 2016-03-28

 DESCRIPTION |    9 +++++----
 MD5         |   12 ++++++------
 NAMESPACE   |    5 ++++-
 NEWS.md     |    2 +-
 R/FWE.R     |    1 +
 R/NPC.R     |   10 ++++++----
 man/NPC.Rd  |   21 ++++++++-------------
 7 files changed, 31 insertions(+), 29 deletions(-)

More information about NPC at CRAN
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Package lessR updated to version 3.4.6 with previous version 3.4.4 dated 2016-03-01

Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is available, as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with 'RStudio' and 'knitr' including generation of R markdown instructions for interpretative output.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>

Diff between lessR versions 3.4.4 dated 2016-03-01 and 3.4.6 dated 2016-03-28

 lessR-3.4.4/lessR/man/set.Rd               |only
 lessR-3.4.6/lessR/DESCRIPTION              |   10 
 lessR-3.4.6/lessR/MD5                      |   93 +++---
 lessR-3.4.6/lessR/NAMESPACE                |    1 
 lessR-3.4.6/lessR/NEWS                     |   72 +++++
 lessR-3.4.6/lessR/R/ANOVAz1.R              |    8 
 lessR-3.4.6/lessR/R/BarChart.R             |   42 ++-
 lessR-3.4.6/lessR/R/BoxPlot.R              |    7 
 lessR-3.4.6/lessR/R/Correlation.R          |    4 
 lessR-3.4.6/lessR/R/Density.R              |    5 
 lessR-3.4.6/lessR/R/Help.R                 |   20 -
 lessR-3.4.6/lessR/R/Histogram.R            |   10 
 lessR-3.4.6/lessR/R/LineChart.R            |    5 
 lessR-3.4.6/lessR/R/Read.R                 |   22 +
 lessR-3.4.6/lessR/R/ScatterPlot.R          |  214 +++++++++++----
 lessR-3.4.6/lessR/R/SummaryStats.R         |    4 
 lessR-3.4.6/lessR/R/bc.data.frame.R        |    8 
 lessR-3.4.6/lessR/R/bc.zmain.R             |  118 ++++----
 lessR-3.4.6/lessR/R/bx.zmain.R             |    6 
 lessR-3.4.6/lessR/R/corEFA.R               |    1 
 lessR-3.4.6/lessR/R/cr.data.frame.R        |   28 +-
 lessR-3.4.6/lessR/R/details.R              |    8 
 lessR-3.4.6/lessR/R/dn.zmain.R             |    2 
 lessR-3.4.6/lessR/R/dp.zmain.R             |   19 -
 lessR-3.4.6/lessR/R/dpmat.zmain.R          |   15 -
 lessR-3.4.6/lessR/R/hst.zmain.R            |    5 
 lessR-3.4.6/lessR/R/lc.zmain.R             |    2 
 lessR-3.4.6/lessR/R/logit.z4Pred.R         |   47 +--
 lessR-3.4.6/lessR/R/pc.zmain.R             |    2 
 lessR-3.4.6/lessR/R/plt.zlegend.R          |    9 
 lessR-3.4.6/lessR/R/plt.zmain.R            |  398 ++++++++++++++++++-----------
 lessR-3.4.6/lessR/R/reg.z3resfitResidual.R |   38 +-
 lessR-3.4.6/lessR/R/reg.z5Plot.R           |   10 
 lessR-3.4.6/lessR/R/set.R                  |  270 -------------------
 lessR-3.4.6/lessR/R/ss.zdata.frame.R       |    3 
 lessR-3.4.6/lessR/R/ss.zfactor.R           |   56 ++--
 lessR-3.4.6/lessR/R/theme.R                |only
 lessR-3.4.6/lessR/R/ttest.R                |    7 
 lessR-3.4.6/lessR/R/ttp2zgraph.R           |   52 +--
 lessR-3.4.6/lessR/R/zzz.R                  |  135 +++++----
 lessR-3.4.6/lessR/man/ANOVA.Rd             |    8 
 lessR-3.4.6/lessR/man/BarChart.Rd          |   49 +--
 lessR-3.4.6/lessR/man/Correlation.Rd       |    3 
 lessR-3.4.6/lessR/man/Histogram.Rd         |    3 
 lessR-3.4.6/lessR/man/LineChart.Rd         |    4 
 lessR-3.4.6/lessR/man/Regression.Rd        |   32 +-
 lessR-3.4.6/lessR/man/ScatterPlot.Rd       |  145 ++++++----
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 49 files changed, 1084 insertions(+), 918 deletions(-)

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New package hkevp with initial version 1.0
Package: hkevp
Type: Package
Title: Spatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012)
Version: 1.0
Date: 2016-03-25
Author: Quentin Sebille
Maintainer: Quentin Sebille <quentin.sebille@gmail.com>
Description: Simulation and fitting procedures for a particular hierarchical max-stable model: the HKEVP of Reich and Shaby (2012) <DOI:10.1214/12-AOAS591>. Spatial prediction and marginal distribution extrapolation are also available, which allows a risk estimation at an ungauged site.
License: GPL
LinkingTo: Rcpp, RcppArmadillo
Depends: Rcpp (>= 0.11.0)
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-03-28 14:47:44 UTC; ligges
Repository: CRAN
Date/Publication: 2016-03-28 16:47:59

More information about hkevp at CRAN
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Package gplots updated to version 3.0.0 with previous version 2.17.0 dated 2015-05-02

Title: Various R Programming Tools for Plotting Data
Description: Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary function as ('bandplot', 'wapply'), - enhanced versions of standard plots ('barplot2', 'boxplot2', 'heatmap.2', 'smartlegend'), - manipulating colors ('col2hex', 'colorpanel', 'redgreen', 'greenred', 'bluered', 'redblue', 'rich.colors'), - calculating and plotting two-dimensional data summaries ('ci2d', 'hist2d'), - enhanced regression diagnostic plots ('lmplot2', 'residplot'), - formula-enabled interface to 'stats::lowess' function ('lowess'), - displaying textual data in plots ('textplot', 'sinkplot'), - plotting a matrix where each cell contains a dot whose size reflects the relative magnitude of the elements ('balloonplot'), - plotting "Venn" diagrams ('venn'), - displaying Open-Office style plots ('ooplot'), - plotting multiple data on same region, with separate axes ('overplot'), - plotting means and confidence intervals ('plotCI', 'plotmeans'), - spacing points in an x-y plot so they don't overlap ('space').
Author: Gregory R. Warnes, Ben Bolker, Lodewijk Bonebakker, Robert Gentleman, Wolfgang Huber Andy Liaw, Thomas Lumley, Martin Maechler, Arni Magnusson, Steffen Moeller, Marc Schwartz, Bill Venables
Maintainer: Gregory R. Warnes <greg@warnes.net>

Diff between gplots versions 2.17.0 dated 2015-05-02 and 3.0.0 dated 2016-03-28

 ChangeLog                    | 1612 +++++++++++++++++++------------------------
 DESCRIPTION                  |   16 
 MD5                          |   45 -
 NAMESPACE                    |   27 
 NEWS                         |   58 +
 R/angleAxis.R                |only
 R/boxplot2.R                 |    4 
 R/heatmap.2.R                |   71 +
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 R/lowess.R                   |   90 +-
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 inst/NEWS                    |   58 +
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 man/gplots-deprecated.Rd     |   17 
 man/heatmap.2.Rd             |    4 
 man/lowess.Rd                |   90 +-
 man/venn.Rd                  |   62 -
 tests/heatmap2Test.Rout.save |   38 -
 26 files changed, 2247 insertions(+), 2290 deletions(-)

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Package bpcp updated to version 1.3.2 with previous version 1.3.1 dated 2016-01-20

Title: Beta Product Confidence Procedure for Right Censored Data
Description: Calculates nonparametric pointwise confidence intervals for the survival distribution for right censored data. Has two-sample tests for dissimilarity (e.g., difference, ratio or odds ratio) in survival at a fixed time. Especially important for small sample sizes or heavily censored data. Includes mid-p options.
Author: Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>

Diff between bpcp versions 1.3.1 dated 2016-01-20 and 1.3.2 dated 2016-03-28

 DESCRIPTION                |    8 ++++----
 MD5                        |   21 +++++++++++----------
 NEWS                       |    4 ++++
 R/kmciFunctions.R          |   18 +++++++++++++-----
 build/vignette.rds         |binary
 inst/CITATION              |    4 ++--
 inst/doc/discreteBPCP.Rnw  |    2 +-
 inst/doc/discreteBPCP.pdf  |binary
 man/bpcp-package.Rd        |    8 ++++----
 man/kmciALL.Rd             |    4 ++--
 tests/FirstObsCensored.R   |only
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 12 files changed, 42 insertions(+), 29 deletions(-)

More information about bpcp at CRAN
Permanent link

New package SNPMClust with initial version 1.2
Package: SNPMClust
Type: Package
Version: 1.2
Title: Bivariate Gaussian Genotype Clustering and Calling for Illumina Microarrays
Date: 2016-03-24
Author: Stephen W. Erickson and Joshua Callaway
Maintainer: Joshua Callaway <joshcllw@gmail.com>
Description: Bivariate Gaussian genotype clustering and calling for Illumina microarrays, building on the package 'mclust'. Pronounced snip-em-clust.
Depends: R (>= 2.14.0), MASS, mclust
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-03-28 08:56:18 UTC; Josh
X-CRAN-Comment: Archived on 2015-06-19 as maintainer address <SErickson@uams.edu> bounced.
Repository: CRAN
Date/Publication: 2016-03-28 14:20:08

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Package SmarterPoland updated to version 1.7 with previous version 1.5 dated 2015-01-30

Title: Tools for Accessing Various Datasets Developed by the Foundation SmarterPoland.pl
Description: Tools for accessing and processing datasets prepared by the Foundation SmarterPoland.pl. Among all: access to API of Google Maps, Central Statistical Office of Poland, MojePanstwo, Eurostat, WHO and other sources.
Author: Przemyslaw Biecek (Foundation SmarterPoland.pl)
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>

Diff between SmarterPoland versions 1.5 dated 2015-01-30 and 1.7 dated 2016-03-28

 DESCRIPTION                  |   13 +-
 MD5                          |   25 ++--
 NAMESPACE                    |    6 -
 R/BankDanychLokalnych.R      |  217 +++++++++++++++++++++++++------------------
 R/getGoogleMapsAddress.R     |    8 -
 R/getMillwardBrown.R         |   72 ++++++++++----
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 16 files changed, 243 insertions(+), 153 deletions(-)

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New package rcmdcheck with initial version 1.0.0
Package: rcmdcheck
Title: Run 'R CMD check' from 'R' and Capture Results
Version: 1.0.0
Author: Gabor Csardi
Maintainer: Gabor Csardi <gcsardi@mango-solutions.com>
Description: Run 'R CMD check' from 'R' programmatically, and capture the results of the individual checks.
License: MIT + file LICENSE
LazyData: true
URL: https://github.com/MangoTheCat/rcmdcheck
BugReports: https://github.com/MangoTheCat/rcmdcheck/issues
RoxygenNote: 5.0.1
Suggests: testthat
Imports: clisymbols, crayon, withr
NeedsCompilation: no
Packaged: 2016-03-17 14:57:16 UTC; gaborcsardi
Repository: CRAN
Date/Publication: 2016-03-28 14:05:29

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Package polyclip updated to version 1.5-1 with previous version 1.4-1 dated 2016-02-14

Title: Polygon Clipping
Description: R port of Angus Johnson's open source library Clipper. Performs polygon clipping operations (intersection, union, set minus, set difference) for polygonal regions of arbitrary complexity, including holes. Computes offset polygons (spatial buffer zones, morphological dilations, Minkowski dilations) for polygonal regions and polygonal lines. Computes Minkowski Sum of general polygons. There is a function for removing self-intersections from polygon data.
Author: Angus Johnson [aut] (C++ original, http://www.angusj.com/delphi/clipper.php), Adrian Baddeley [aut, trl, cre], Brian D. Ripley [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>

Diff between polyclip versions 1.4-1 dated 2016-02-14 and 1.5-1 dated 2016-03-28

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Package Gmedian updated to version 1.1 with previous version 1.0 dated 2016-03-27

Title: Geometric Median, k-Median Clustering and Robust Median PCA
Description: Fast algorithms based on averaged stochastic gradient for robust estimation with large samples. Estimation of the geometric median, robust k-Gmedian clustering, and robust PCA based on the Gmedian covariation matrix.
Author: Herve Cardot
Maintainer: Herve Cardot <herve.cardot@u-bourgogne.fr>

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Package pomp updated to version 1.4.1.1 with previous version 1.3.1.1 dated 2016-02-29

Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov processes (POMPs, AKA stochastic dynamical systems, state-space models). 'pomp' provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a platform for the implementation of new inference methods.
Author: Aaron A. King [aut, cre], Edward L. Ionides [aut], Carles Breto [aut], Stephen P. Ellner [ctb], Matthew J. Ferrari [ctb], Bruce E. Kendall [ctb], Michael Lavine [ctb], Dao Nguyen [ctb], Daniel C. Reuman [ctb], Helen Wearing [ctb], Simon N. Wood [ctb], Sebastian Funk [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>

Diff between pomp versions 1.3.1.1 dated 2016-02-29 and 1.4.1.1 dated 2016-03-28

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Package openVA updated to version 1.0.1 with previous version 1.0 dated 2016-03-12

Title: Automated Method for Verbal Autopsy
Description: Implements multiple existing open-source algorithms for coding cause of death from verbal autopsies. It also provides tools for data manipulation tasks commonly used in Verbal Autopsy analysis and implements easy graphical visualization of individual and population level statistics.
Author: Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li <lizehang@uw.edu>

Diff between openVA versions 1.0 dated 2016-03-12 and 1.0.1 dated 2016-03-28

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Package needs updated to version 0.0.3 with previous version 0.0.2 dated 2015-12-18

Title: Attaches and Installs Packages
Description: A simple function for easier package loading and auto-installation.
Author: Josh Katz [aut, cre]
Maintainer: Josh Katz <josh.katz@nytimes.com>

Diff between needs versions 0.0.2 dated 2015-12-18 and 0.0.3 dated 2016-03-28

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Package highcharter updated to version 0.3.0 with previous version 0.2.0 dated 2016-02-25

Title: A Wrapper for the 'Highcharts' Library
Description: A wrapper for the 'Highcharts' library including shortcut functions to plot R objects. 'Highcharts' <http://www.highcharts.com/> is a charting library offering numerous chart types with a simple configuration syntax.
Author: Joshua Kunst <jbkunst@gmail.com>
Maintainer: Joshua Kunst <jbkunst@gmail.com>

Diff between highcharter versions 0.2.0 dated 2016-02-25 and 0.3.0 dated 2016-03-28

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Package ggExtra updated to version 0.4.0 with previous version 0.3.4 dated 2016-01-06

Title: Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements
Description: Collection of functions and layers to enhance 'ggplot2'. The main function is ggMarginal(), which can be used to add marginal histograms/boxplots/density plots to 'ggplot2' scatterplots.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>

Diff between ggExtra versions 0.3.4 dated 2016-01-06 and 0.4.0 dated 2016-03-28

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Package ExpDE updated to version 0.1.2 with previous version 0.1.1 dated 2016-03-26

Title: Modular Differential Evolution for Experimenting with Operators
Description: Modular implementation of the Differential Evolution algorithm for experimenting with different types of operators.
Author: Felipe Campelo [aut, cre], Moises Botelho [aut]
Maintainer: Felipe Campelo <fcampelo@ufmg.br>

Diff between ExpDE versions 0.1.1 dated 2016-03-26 and 0.1.2 dated 2016-03-28

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Package activpalProcessing updated to version 1.0.1 with previous version 1.0 dated 2016-01-25

Title: Process activPAL Events Files
Description: Performs estimation of physical activity and sedentary behavior variables from activPAL (PAL Technologies, Glasgow, Scotland) events files. See <http://paltechnologies.com> for more information on the activPAL.
Author: Kate Lyden
Maintainer: Kate Lyden <activpalProcessing@gmail.com>

Diff between activpalProcessing versions 1.0 dated 2016-01-25 and 1.0.1 dated 2016-03-28

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