Title: Paleontological and Phylogenetic Analyses of Evolution
Description: Provides tools for transforming, a posteriori time-scaling, and
modifying phylogenies containing extinct (i.e. fossil) lineages. In particular,
most users are interested in the functions timePaleoPhy(), bin_timePaleoPhy(),
cal3TimePaleoPhy() and bin_cal3TimePaleoPhy(), which a posteriori time-scale cladograms of
fossil taxa into dated phylogenies. This package also contains a large number
of likelihood functions for estimating sampling and diversification rates from
different types of data available from the fossil record (e.g. range data,
occurrence data, etc). paleotree users can also simulate diversification and
sampling in the fossil record using the function simFossilRecord(), which is a
detailed simulator for branching birth-death-sampling processes composed of
discrete taxonomic units arranged in ancestor-descendant relationships. Users
can use simFossilRecord() to simulate diversification in incompletely sampled
fossil records, under various models of morphological differentiation (i.e.
the various patterns by which morphotaxa originate from one another), and
with time-dependent, longevity-dependent and/or diversity-dependent rates of
diversification, extinction and sampling. Additional functions allow users to
translate simulated ancestor-descendant data from simFossilRecord() into standard
time-scaled phylogenies or unscaled cladograms that reflect the relationships
among taxon units.
Author: David W. Bapst
Maintainer: David W. Bapst <dwbapst@gmail.com>
Diff between paleotree versions 2.6 dated 2015-12-02 and 2.7 dated 2016-04-13
CHANGELOG | 11 +++ DESCRIPTION | 20 +++--- MD5 | 40 ++++++------ R/binTimeData.R | 2 R/cal3TimePaleoPhy.R | 83 +++++++++++++++++++------- R/horizonSampRate.R | 51 +++++++++++++--- R/paleotree-package.R | 5 + R/plotTraitgram.R | 146 ++++++++++++++++++++++++++++++++--------------- R/probAnc.R | 36 ++++++++--- R/sampleRanges.R | 2 R/simFossilRecord.R | 20 ++++-- R/timePaleoPhy.R | 95 ++++++++++++++++-------------- README | 14 +++- man/binTimeData.Rd | 2 man/cal3TimePaleoPhy.Rd | 57 ++++++++++-------- man/horizonSampRate.Rd | 16 ++--- man/paleotree-package.Rd | 5 + man/plotTraitgram.Rd | 39 ++++++++---- man/probAnc.Rd | 16 ++--- man/simFossilRecord.Rd | 19 +++--- man/timePaleoPhy.Rd | 75 +++++++++++++----------- 21 files changed, 488 insertions(+), 266 deletions(-)
Title: Analysis of the 'Elements of Metacommunity Structure'
Description: Functions to analyze coherence, boundary clumping, and turnover
following the pattern-based metacommunity analysis of Leibold and Mikkelson
2002. The package also includes functions to visualize ecological networks, and
to calculate modularity as a replacement to boundary clumping.
Author: Tad Dallas
Maintainer: Tad Dallas <tdallas@uga.edu>
Diff between metacom versions 1.4.3 dated 2015-04-13 and 1.4.4 dated 2016-04-13
metacom-1.4.3/metacom/R/MetaImportance.R |only metacom-1.4.3/metacom/man/MetaImportance.Rd |only metacom-1.4.4/metacom/DESCRIPTION | 21 + metacom-1.4.4/metacom/MD5 | 52 ++-- metacom-1.4.4/metacom/NAMESPACE | 24 + metacom-1.4.4/metacom/R/BoundaryClump.R | 109 ++++++-- metacom-1.4.4/metacom/R/Coherence.R | 155 ++++++++---- metacom-1.4.4/metacom/R/IdentifyStructure.R | 106 ++++++-- metacom-1.4.4/metacom/R/Imagine.R | 61 +++- metacom-1.4.4/metacom/R/Metacommunity.R | 139 ++++++++--- metacom-1.4.4/metacom/R/Modularity.R | 314 ++++++++++++++----------- metacom-1.4.4/metacom/R/NullMaker.R | 112 ++++++-- metacom-1.4.4/metacom/R/OrderMatrix.R | 75 ++++- metacom-1.4.4/metacom/R/Turnover.R | 111 ++++++-- metacom-1.4.4/metacom/R/metacom-package.R |only metacom-1.4.4/metacom/data/TestMatrices.rda |binary metacom-1.4.4/metacom/man/BoundaryClump.Rd | 115 ++++----- metacom-1.4.4/metacom/man/Coherence.Rd | 141 +++++------ metacom-1.4.4/metacom/man/IdentifyStructure.Rd | 62 +--- metacom-1.4.4/metacom/man/Imagine.Rd | 109 +++----- metacom-1.4.4/metacom/man/Metacommunity.Rd | 174 ++++++------- metacom-1.4.4/metacom/man/Modularity.Rd | 128 +++++----- metacom-1.4.4/metacom/man/NullMaker.Rd | 117 ++++----- metacom-1.4.4/metacom/man/OrderMatrix.Rd | 104 +++----- metacom-1.4.4/metacom/man/TestMatrices.Rd | 62 ++-- metacom-1.4.4/metacom/man/Turnover.Rd | 151 +++++------- metacom-1.4.4/metacom/man/metacom-package.Rd | 121 ++++++--- metacom-1.4.4/metacom/tests |only 28 files changed, 1498 insertions(+), 1065 deletions(-)
Title: Get Data for Brazilian Bonds (Tesouro Direto)
Description: Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <http://www.tesouro.fazenda.gov.br/tesouro-direto-balanco-e-estatisticas>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetTDData versions 1.0 dated 2016-02-10 and 1.1 dated 2016-04-13
DESCRIPTION | 9 ++- MD5 | 21 ++++---- NEWS.md |only R/gtdd_download_TD_data.R | 36 ++++++++++++--- R/gtdd_read_TD_files.R | 2 build/vignette.rds |binary inst/doc/gtdd-vignette.R | 2 inst/doc/gtdd-vignette.Rmd | 14 ++--- inst/doc/gtdd-vignette.html | 103 ++++++++++++++++++++------------------------ man/download.TD.data.Rd | 11 ++-- man/read.TD.files.Rd | 2 vignettes/gtdd-vignette.Rmd | 14 ++--- 12 files changed, 114 insertions(+), 100 deletions(-)
Title: Simulation and Inference for Stochastic Differential Equations
Description: Companion package to the book Simulation and Inference for
Stochastic Differential Equations With R Examples, ISBN
978-0-387-75838-1, Springer, NY.
Author: Stefano Maria Iacus
Maintainer: Stefano Maria Iacus <stefano.iacus@unimi.it>
Diff between sde versions 2.0.14 dated 2015-08-21 and 2.0.15 dated 2016-04-13
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/DBridge.R | 2 +- R/MOdist.R | 2 +- R/rCIR.R | 2 +- R/rOU.R | 2 +- R/sde.sim.R | 12 ++++++------ R/sde.sim.ea.R | 8 ++++---- R/simple.ef2.R | 4 ++-- build/vignette.rds |binary inst/doc/sde.errata.pdf |binary 11 files changed, 30 insertions(+), 30 deletions(-)
Title: Generalized Survival Models
Description: R implementation of generalized survival models, where g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth. For fully parametric models, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects.
Author: Mark Clements [aut, cre], Xing-Rong Liu [aut], Paul Lambert [ctb]
Maintainer: Mark Clements <mark.clements@ki.se>
Diff between rstpm2 versions 1.3.1 dated 2016-02-24 and 1.3.2 dated 2016-04-13
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/pm2-3.R | 45 ++++++++++++++++++++++++++++++++++++--------- build/vignette.rds |binary man/predict-methods.Rd | 8 ++++++-- src/test-nmmin.cpp | 10 +++++----- 6 files changed, 57 insertions(+), 26 deletions(-)
Title: Data Sets from the History of Statistics and Data Visualization
Description: The HistData package provides a collection of small data sets
that are interesting and important in the history of statistics and data visualization.
The goal of the package is to make these available, both for instructional use
and for historical research. Some of these present interesting challenges for graphics
or analysis in R.
Author: Michael Friendly [aut, cre],
Stephane Dray [ctb],
Hadley Wickham [ctb],
James Hanley [ctb],
Dennis Murphy [ctb],
Peter Li [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between HistData versions 0.7-6 dated 2015-10-16 and 0.7-8 dated 2016-04-13
DESCRIPTION | 21 +++++---- MD5 | 99 ++++++++++++++++++++++++---------------------- NEWS | 9 ++++ build |only data/Arbuthnot.RData |binary data/Armada.RData |binary data/Bowley.RData |binary data/Cavendish.RData |binary data/ChestSizes.RData |binary data/CushnyPeebles.RData |binary data/CushnyPeeblesN.RData |binary data/Dactyl.RData |binary data/DrinksWages.RData |binary data/Fingerprints.RData |binary data/Galton.RData |binary data/GaltonFamilies.RData |binary data/Guerry.RData |binary data/Jevons.RData |binary data/Langren.all.RData |binary data/Langren1644.RData |binary data/Macdonell.RData |binary data/MacdonellDF.RData |binary data/Michelson.RData |binary data/MichelsonSets.RData |binary data/Minard.cities.RData |binary data/Minard.temp.RData |binary data/Minard.troops.RData |binary data/Nightingale.RData |binary data/OldMaps.RData |binary data/PearsonLee.RData |binary data/PolioTrials.RData |binary data/Prostitutes.RData |binary data/Pyx.RData |binary data/Quarrels.RData |binary data/Snow.deaths.RData |binary data/Snow.deaths2.RData |only data/Snow.polygons.RData |binary data/Snow.pumps.RData |binary data/Snow.streets.RData |binary data/Wheat.RData |binary data/Wheat.monarchs.RData |binary data/Yeast.RData |binary data/YeastD.mat.RData |binary data/ZeaMays.RData |binary inst/doc |only man/Arbuthnot.Rd | 5 +- man/ChestSizes.Rd | 3 - man/HistData-package.Rd | 4 - man/Snow.Rd | 6 ++ man/Yeast.Rd | 4 - man/ZeaMays.Rd | 2 vignettes |only 52 files changed, 87 insertions(+), 66 deletions(-)
Title: Generalized Waring Regression Model for Count Data
Description: Statistical functions to fit, validate and describe a Generalized
Waring Regression Model (GWRM).
Author: Antonio Jose Saez-Castillo [aut, cre],
Silverio Vilchez-Lopez [aut],
Maria Jose Olmo-Jimenez [aut],
Jose Rodriguez-Avi [aut],
Antonio Conde-Sanchez [aut],
Ana Maria Martinez-Rodriguez [aut]
Maintainer: Antonio Jose Saez-Castillo <ajsaez@ujaen.es>
Diff between GWRM versions 2.1.0.1 dated 2016-02-08 and 2.1.0.2 dated 2016-04-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/residuals.R | 29 +++++++++++++++++++++-------- man/residuals.gw.Rd | 2 +- 4 files changed, 29 insertions(+), 16 deletions(-)
Title: Tools for Easily Combining and Cleaning Data Sets
Description: Tools for combining and cleaning data sets, particularly
with grouped and time series data.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between DataCombine versions 0.2.20 dated 2016-03-27 and 0.2.21 dated 2016-04-13
DESCRIPTION | 8 ++-- MD5 | 20 ++++++----- NAMESPACE | 3 + NEWS | 94 +++++++++++++++++++++++++++++------------------------- R/CasesTable.R |only R/DropNA.R | 52 +++++++++++++++-------------- R/PercChange.R | 21 ++++++------ R/slide.R | 11 +++++- README.md | 10 ++++- man/CasesTable.Rd |only man/DropNA.Rd | 8 ++-- man/change.Rd | 18 ++++++---- 12 files changed, 139 insertions(+), 106 deletions(-)
Title: Japanese Utility Functions and Data
Description: Japan-specific data is sometimes too unhandy for R users to manage. The utility functions and data in this package disencumber us from such an unnecessary burden.
Author: Susumu Tanimura <aruminat@gmail.com> [aut, cre],
Hironobu Takahashi [cph],
Hajime Baba [cph],
Takatsugu Nokubi [cph]
Maintainer: Susumu Tanimura <aruminat@gmail.com>
Diff between Nippon versions 0.6.3 dated 2015-12-10 and 0.6.3-1 dated 2016-04-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/Makevars.win | 2 +- src/kakasi/Makefile.win | 3 +-- 4 files changed, 8 insertions(+), 9 deletions(-)
Title: Estimation of Diagonal Elements of Sparse Precision-Matrices
Description: Several estimators of the diagonal elements of a sparse precision
(inverse covariance) matrix from a sample of Gaussian vectors for a
given matrix of estimated marginal regression coefficients.
To install package 'gurobi', instructions at
http://user.gurobi.com/download/gurobi-optimizer and
http://www.gurobi.com/documentation/6.0/refman/r_api_overview.html.
Author: Arnak Dalalyan [aut], Samuel Balmand [aut, cre]
Maintainer: Samuel Balmand <Samuel.Balmand@ensg.eu>
Diff between DESP versions 0.1-6 dated 2015-11-23 and 0.1-6-1 dated 2016-04-13
DESCRIPTION | 6 - MD5 | 4 src/scs/scs.mk | 250 ++++++++++++++++++++++++++++----------------------------- 3 files changed, 130 insertions(+), 130 deletions(-)
Title: Develop and Run Spatially Explicit Discrete Event Simulation
Models
Description: Easily implement a variety of simulation models, with a focus on
spatially explicit agent based models. These include raster-based,
event-based, and agent-based models. The core simulation components are
built upon a discrete event simulation framework that facilitates
modularity, and easily enables the user to include additional functionality
by running user-built simulation modules. Included are numerous tools to
visualize raster and other maps. The suggested package `fastshp` can be
installed with `install.packages("fastshp", repos="http://rforge.net",
type="source")`.
Author: Alex M Chubaty [aut, cre],
Eliot J B McIntire [aut],
Yong Luo [ctb],
Steve Cumming [ctb],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alexander.chubaty@canada.ca>
Diff between SpaDES versions 1.1.1 dated 2016-02-16 and 1.1.2 dated 2016-04-13
DESCRIPTION | 43 MD5 | 177 +-- NAMESPACE | 52 + NEWS | 24 R/SELES.R | 102 +- R/agent.R | 2 R/check.R | 5 R/checkpoint.R | 6 R/copy.R |only R/experiment.R |only R/helpers.R |only R/initialize.R | 65 - R/load.R | 82 - R/mapReduce.R | 4 R/misc-methods.R | 13 R/module-dependencies-methods.R | 34 R/module-repository.R | 60 - R/module-template.R | 8 R/moduleMetadata.R | 7 R/neighbourhood.R | 5 R/plotting-colours.R | 151 +-- R/plotting-diagrams.R | 18 R/plotting-helpers.R | 5 R/plotting-other.R | 35 R/plotting.R | 151 +-- R/progress.R | 4 R/save.R | 27 R/shine.R |only R/simList-accessors.R | 487 +++++++--- R/simList-class.R | 36 R/simulation.R | 338 ++++-- R/spades-package.R | 19 R/splitRaster.R | 2 R/spread-process.R | 156 +-- R/times.R | 84 - README.md | 6 build/vignette.rds |binary inst/doc/i-introduction.R | 2 inst/doc/i-introduction.Rmd | 11 inst/doc/i-introduction.html | 26 inst/doc/ii-modules.R | 32 inst/doc/ii-modules.Rmd | 45 inst/doc/ii-modules.html | 73 - inst/doc/iii-plotting.R | 10 inst/doc/iii-plotting.Rmd | 10 inst/doc/iii-plotting.html | 79 - inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R | 4 inst/sampleModules/caribouMovement/caribouMovement.R | 7 inst/sampleModules/fireSpread/fireSpread.R | 7 inst/sampleModules/randomLandscapes/randomLandscapes.R | 9 man/Plot.Rd | 12 man/SpaDES-package.Rd | 21 man/checksums.Rd | 2 man/cir.Rd | 3 man/copy.Rd |only man/doEvent.Rd | 2 man/downloadData.Rd | 12 man/downloadModule.Rd | 28 man/emptyEventList.Rd |only man/emptyMetadata.Rd | 3 man/experiment.Rd |only man/fileTable.Rd | 8 man/gaussmap.Rd | 4 man/heading.Rd | 2 man/initiateAgents.Rd | 4 man/loadFiles.Rd | 12 man/objectNames.Rd | 6 man/parseArgs.Rd | 2 man/randomPolygons.Rd | 4 man/rasterizeReduce.Rd | 4 man/scheduleEvent.Rd | 2 man/setColors.Rd | 2 man/shine.Rd |only man/sim2gantt.Rd | 5 man/simInit.Rd | 69 + man/simList-accessors-events.Rd | 20 man/simList-accessors-inout.Rd | 113 ++ man/simList-accessors-modules.Rd | 8 man/simList-class.Rd | 7 man/spades.Rd | 9 man/splitRaster.Rd | 2 man/spread.Rd | 7 man/updateList.Rd | 3 tests/testthat/test-Plot.R | 282 +++-- tests/testthat/test-adj.R | 1 tests/testthat/test-downloadModule.R | 6 tests/testthat/test-experiment.R |only tests/testthat/test-load.R | 20 tests/testthat/test-module-deps-methods.R | 6 tests/testthat/test-simList.R | 26 tests/testthat/test-timeunits.R | 2 vignettes/i-introduction.Rmd | 11 vignettes/ii-modules.Rmd | 45 vignettes/iii-plotting.Rmd | 10 94 files changed, 2082 insertions(+), 1226 deletions(-)
Title: SYMPHONY in R
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut],
Kurt Hornik [aut, cre],
Stefan Theussl [aut],
Cyrille Szymanski [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Rsymphony versions 0.1-21 dated 2015-06-22 and 0.1-22 dated 2016-04-13
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/Makevars.win | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Calculate Accurate Precision-Recall and Receiver Operator
Characteristics Curves
Description: Accurate calculations and visualization of Precision-Recall and Receiver Operator Characteristics
curves.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.3.1 dated 2016-03-01 and 0.3.2 dated 2016-04-13
precrec-0.3.1/precrec/NEWS.md |only precrec-0.3.2/precrec/DESCRIPTION | 8 +- precrec-0.3.2/precrec/MD5 | 23 ++++---- precrec-0.3.2/precrec/build/vignette.rds |binary precrec-0.3.2/precrec/inst/doc/introduction.html | 14 ++--- precrec-0.3.2/precrec/tests/testthat/test_g_autoplot1_pl.R | 6 +- precrec-0.3.2/precrec/tests/testthat/test_g_autoplot2_curves.R | 8 +- precrec-0.3.2/precrec/tests/testthat/test_g_autoplot3_points.R | 12 ++-- precrec-0.3.2/precrec/tests/testthat/test_g_plot2_curves.R | 27 ++++------ precrec-0.3.2/precrec/tests/testthat/test_g_plot3_points.R | 21 +++---- precrec-0.3.2/precrec/tests/testthat/test_mm2_1_join_datasets.R | 14 ++--- precrec-0.3.2/precrec/tests/testthat/test_mm2_2_join_scores.R | 10 +-- precrec-0.3.2/precrec/tests/testthat/test_mm2_3_join_labels.R | 8 +- 13 files changed, 72 insertions(+), 79 deletions(-)
Title: Testing Workbench for Precision-Recall Curves
Description: A testing workbench for evaluating Precision-Recall curves under various conditions.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between prcbench versions 0.3.1 dated 2016-03-04 and 0.3.2 dated 2016-04-13
DESCRIPTION | 8 +++---- MD5 | 24 +++++++++++------------ build/vignette.rds |binary inst/doc/introduction.html | 22 ++++++++++----------- tests/testthat/test_data_bench.R | 16 +++++++-------- tests/testthat/test_data_curve.R | 18 ++++++++--------- tests/testthat/test_data_userd.R | 12 +++++------ tests/testthat/test_main_benchmark.R | 35 ++++++++++++++++------------------ tests/testthat/test_main_evalcurves.R | 4 +-- tests/testthat/test_plot_autoplot.R | 7 +++--- tests/testthat/test_print.R | 14 ++++++------- tests/testthat/test_tool_tools.R | 35 ++++++++++++++++------------------ tests/testthat/test_tool_userd.R | 20 +++++++++---------- 13 files changed, 107 insertions(+), 108 deletions(-)
More information about optDesignSlopeInt at CRAN
Permanent link
Title: Spatial Nonparametric Covariance Functions
Description: R functions for analyzing spatial (cross-)covariance: the
nonparametric (cross-)covariance, the spline correlogram, the
nonparametric phase coherence function, and related.
Author: Ottar N. Bjornstad <onb1@psu.edu>
Maintainer: Ottar N. Bjornstad <onb1@psu.edu>
Diff between ncf versions 1.1-6 dated 2015-12-06 and 1.1-7 dated 2016-04-13
CHANGES | 4 +++ DESCRIPTION | 10 ++++----- MD5 | 12 +++++------ R/ncf.r | 53 +++++++++++++++++++++------------------------------- man/plot.lisa.Rd | 6 +++-- man/plot.lisa.nc.Rd | 4 ++- man/spatial.plot.Rd | 6 ++++- 7 files changed, 49 insertions(+), 46 deletions(-)
Title: Multidimensional Latent Class Item Response Theory Models
Description: Framework for the Item Response Theory analysis of dichotomous and ordinal polytomous outcomes under the assumption of multidimensionality and discreteness of the latent traits. The fitting algorithms allow for missing responses and for different item parameterizations and are based on the Expectation-Maximization paradigm. Individual covariates affecting the class weights may be included in the new version (since 2.1).
Author: Francesco Bartolucci, Silvia Bacci, Michela Gnaldi - University of Perugia (IT)
Maintainer: Francesco Bartolucci <bart@stat.unipg.it>
Diff between MultiLCIRT versions 2.9 dated 2015-02-14 and 2.10 dated 2016-04-13
DESCRIPTION | 8 - MD5 | 34 ++++---- NAMESPACE | 1 R/class_item.R | 8 - R/est_multi_glob.R | 10 +- R/est_multi_poly.R | 12 ++ R/est_multi_poly_clust.R | 182 +++++++++++++++++++++++++------------------- man/MultiLCIRT-package.Rd | 7 - man/aggr_data.Rd | 3 man/class_item.Rd | 12 +- man/compare_models.Rd | 3 man/est_multi_glob.Rd | 5 - man/est_multi_poly.Rd | 18 ++-- man/est_multi_poly_clust.Rd | 24 +++-- man/lk_obs_score.Rd | 5 - man/lk_obs_score_clust.Rd | 6 - man/search.model.Rd | 4 man/test_dim.Rd | 8 - 18 files changed, 202 insertions(+), 148 deletions(-)
Title: Multinomial Processing Tree Models
Description: Fitting and testing multinomial processing tree (MPT) models, a
class of statistical models for categorical data. The parameters are the
link probabilities of a tree-like graph and represent the latent cognitive
processing steps executed to arrive at observable response categories
(Batchelder & Riefer, 1999; Erdfelder et al., 2009; Riefer &
Batchelder, 1988).
Author: Florian Wickelmaier [aut, cre],
Achim Zeileis [aut]
Maintainer: Florian Wickelmaier <wickelmaier@web.de>
Diff between mpt versions 0.5-2 dated 2015-08-27 and 0.5-3 dated 2016-04-13
ChangeLog | 5 +++ DESCRIPTION | 10 +++---- MD5 | 14 +++++----- R/mpt.R | 65 ++++++++++++++++++++++++------------------------- data/proact.rda |binary data/prospecMemory.rda |binary data/recogROC.rda |binary data/retroact.rda |binary 8 files changed, 49 insertions(+), 45 deletions(-)
Title: Create a Mini Version of CRAN Containing Only Selected Packages
Description: Makes it possible to create an internally consistent
repository consisting of selected packages from CRAN-like repositories.
The user specifies a set of desired packages, and miniCRAN recursively
reads the dependency tree for these packages, then downloads only this
subset. The user can then install packages from this repository directly,
rather than from CRAN. This is useful in production settings, e.g. server
behind a firewall, or remote locations with slow broadband access.
Author: Revolution Analytics [aut],
Andrie de Vries [aut, cre],
Alex Chubaty [ctb]
Maintainer: Andrie de
Vries <adevries@microsoft.com>
Diff between miniCRAN versions 0.2.4 dated 2015-03-27 and 0.2.5 dated 2016-04-13
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Title: Genotyping and SNP Detection using Next Generation Sequencing
Data
Description: Genotyping the population using next generation sequencing data is essentially important for the rare variant detection. In order to distinguish the genomic structural variation from sequencing error, we propose a statistical model which involves the genotype effect through a latent variable to depict the distribution of non-reference allele frequency data among different samples and different genome loci, while decomposing the sequencing error into sample effect and positional effect. An ECM algorithm is implemented to estimate the model parameters, and then the genotypes and SNPs are inferred based on the empirical Bayes method.
Author: Na You <youn@mail.sysu.edu.cn> and Gongyi Huang<53hgy@163.com>
Maintainer: Gongyi Huang<53hgy@163.com>
Diff between ebGenotyping versions 1.0 dated 2015-05-05 and 2.0.1 dated 2016-04-13
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Title: Choice Item Response Theory
Description: Jointly model the accuracy of cognitive responses and item choices within a bayesian hierarchical framework as described by Culpepper and Balamuta (2015) <doi:10.1007/s11336-015-9484-7>. In addition, the package contains the datasets used within the analysis of the paper.
Author: Steve Culpepper [aut, cph],
James Balamuta [aut, cre, ctb, com, cph]
Maintainer: James Balamuta <balamut2@illinois.edu>
Diff between cIRT versions 1.1.0 dated 2015-12-29 and 1.2.0 dated 2016-04-13
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Title: Calculate and Analyze Blau Status for Measuring Social Distance
Description: An integrated set of tools to calculate and analyze Blau statuses quantifying social distance between individuals belonging to organizations. Relational (network) data may be incorporated for additional analyses.
Author: Cheng Wang*, Michael Genkin*, George Berry, Liyuan Chen, Matthew Brashears *Both authors contributed equally to this work and their names are randomly ordered
Maintainer: Cheng Wang <cwang3@nd.edu>
Diff between Blaunet versions 2.0.3 dated 2016-04-01 and 2.0.4 dated 2016-04-13
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/scripts/blaububbles.R | 3 ++- inst/scripts/command.pdf |binary man/blaunet-package.Rd | 4 ++-- 5 files changed, 11 insertions(+), 10 deletions(-)