Sun, 17 Apr 2016

New package treeman with initial version 1.0
Package: treeman
Type: Package
Title: Phylogenetic Tree Manipulation Class and Methods
Version: 1.0
Date: 2016-04-16
Author: D.J. Bennett
Maintainer: D.J. Bennett <dominic.john.bennett@gmail.com>
Description: S4 class and methods for efficient phylogenetic tree manipulation for simulating evolution, running phylogenetic statistics and plotting.
License: GPL-2
Depends: R (>= 3.2.4), methods
Imports: plyr
Suggests: testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-17 15:42:13 UTC; djb208
Repository: CRAN
Date/Publication: 2016-04-17 19:50:17

More information about treeman at CRAN
Permanent link

Package RcppCCTZ updated to version 0.0.4 with previous version 0.0.3 dated 2016-01-19

Title: 'Rcpp' Bindings for the 'CCTZ' Library
Description: 'Rcpp' Access to the 'CCTZ' timezone library is provided. 'CCTZ' is a C++ library for translating between absolute and civil times using the rules of a time zone. The 'CCTZ' source code, released under the Apache 2.0 License, is included in this package. See <https://github.com/google/cctz> for more details.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppCCTZ versions 0.0.3 dated 2016-01-19 and 0.0.4 dated 2016-04-17

 RcppCCTZ-0.0.3/RcppCCTZ/inst/include/src/tzfile.h        |only
 RcppCCTZ-0.0.3/RcppCCTZ/src/cctz_cnv.cc                  |only
 RcppCCTZ-0.0.3/RcppCCTZ/src/cctz_fmt.cc                  |only
 RcppCCTZ-0.0.3/RcppCCTZ/src/cctz_if.cc                   |only
 RcppCCTZ-0.0.3/RcppCCTZ/src/cctz_impl.cc                 |only
 RcppCCTZ-0.0.3/RcppCCTZ/src/cctz_info.cc                 |only
 RcppCCTZ-0.0.3/RcppCCTZ/src/cctz_libc.cc                 |only
 RcppCCTZ-0.0.3/RcppCCTZ/src/cctz_posix.cc                |only
 RcppCCTZ-0.0.4/RcppCCTZ/ChangeLog                        |   15 
 RcppCCTZ-0.0.4/RcppCCTZ/DESCRIPTION                      |    8 
 RcppCCTZ-0.0.4/RcppCCTZ/MD5                              |   39 -
 RcppCCTZ-0.0.4/RcppCCTZ/README.md                        |   14 
 RcppCCTZ-0.0.4/RcppCCTZ/inst/NEWS.Rd                     |   15 
 RcppCCTZ-0.0.4/RcppCCTZ/inst/include/civil_time.h        |only
 RcppCCTZ-0.0.4/RcppCCTZ/inst/include/civil_time_detail.h |only
 RcppCCTZ-0.0.4/RcppCCTZ/inst/include/src/cctz.h          |  437 ++++-----------
 RcppCCTZ-0.0.4/RcppCCTZ/inst/include/time_zone.h         |only
 RcppCCTZ-0.0.4/RcppCCTZ/inst/include/time_zone_if.h      |only
 RcppCCTZ-0.0.4/RcppCCTZ/inst/include/time_zone_impl.h    |only
 RcppCCTZ-0.0.4/RcppCCTZ/inst/include/time_zone_info.h    |only
 RcppCCTZ-0.0.4/RcppCCTZ/inst/include/time_zone_libc.h    |only
 RcppCCTZ-0.0.4/RcppCCTZ/inst/include/time_zone_posix.h   |only
 RcppCCTZ-0.0.4/RcppCCTZ/inst/include/tzfile.h            |only
 RcppCCTZ-0.0.4/RcppCCTZ/src/Makevars                     |    2 
 RcppCCTZ-0.0.4/RcppCCTZ/src/examples.cpp                 |   67 +-
 RcppCCTZ-0.0.4/RcppCCTZ/src/time_tool.cc                 |only
 RcppCCTZ-0.0.4/RcppCCTZ/src/time_zone_format.cc          |only
 RcppCCTZ-0.0.4/RcppCCTZ/src/time_zone_if.cc              |only
 RcppCCTZ-0.0.4/RcppCCTZ/src/time_zone_impl.cc            |only
 RcppCCTZ-0.0.4/RcppCCTZ/src/time_zone_info.cc            |only
 RcppCCTZ-0.0.4/RcppCCTZ/src/time_zone_libc.cc            |only
 RcppCCTZ-0.0.4/RcppCCTZ/src/time_zone_lookup.cc          |only
 RcppCCTZ-0.0.4/RcppCCTZ/src/time_zone_posix.cc           |only
 33 files changed, 219 insertions(+), 378 deletions(-)

More information about RcppCCTZ at CRAN
Permanent link

Package PSF updated to version 0.1.1 with previous version 0.1 dated 2016-03-25

Title: Algorithm for Pattern Sequence Based Forecasting
Description: Various functions in Pattern Sequence Based Forecasting (PSF) takes time series data as input and assist to forecast the future value with the help of Algorithm PSF. This algorithm forecasts the behavior of time series based on similarity of pattern sequences. Initially, clustering is done with the labeling of samples from database. The labels associated with samples are then used for forecasting the future behaviour of time series data. The further technical details and references regarding PSF are discussed in Vignette.
Author: Neeraj Bokde
Maintainer: Neeraj Bokde <neerajdhanraj@gmail.com>

Diff between PSF versions 0.1 dated 2016-03-25 and 0.1.1 dated 2016-04-17

 DESCRIPTION                |    6 +++---
 MD5                        |    6 +++---
 R/optimum_w.R              |    3 ++-
 inst/doc/PSF_vignette.html |    8 ++++----
 4 files changed, 12 insertions(+), 11 deletions(-)

More information about PSF at CRAN
Permanent link

Package pixiedust updated to version 0.7.0 with previous version 0.6.1 dated 2016-01-23

Title: Tables so Beautifully Fine-Tuned You Will Believe It's Magic
Description: The introduction of the broom package has made converting model objects into data frames as simple as a single function. While the broom package focuses on providing tidy data frames that can be used in advanced analysis, it deliberately stops short of providing functionality for reporting models in publication-ready tables. pixiedust provides this functionality with a programming interface intended to be similar to ggplot2's system of layers with fine tuned control over each cell of the table. Options for output include printing to the console and to the common markdown formats (markdown, HTML, and LaTeX). With a little pixiedust (and happy thoughts) tables can really fly.
Author: Benjamin Nutter [aut, cre]
Maintainer: Benjamin Nutter <nutter@battelle.org>

Diff between pixiedust versions 0.6.1 dated 2016-01-23 and 0.7.0 dated 2016-04-17

 DESCRIPTION                               |   29 
 MD5                                       |  126 -
 NAMESPACE                                 |   20 
 NEWS                                      |   48 
 R/as.data.frame.dust.R                    |  150 -
 R/assert_match_arg.R                      |only
 R/dust.R                                  |  105 +
 R/glance_foot.R                           |  320 +--
 R/medley.R                                |  130 -
 R/medley_all_borders.R                    |only
 R/perform_function.R                      |   82 
 R/pixiedust-pkg.R                         |   54 
 R/pixieply.R                              |only
 R/print.dust.R                            |   43 
 R/print_dust_console.R                    |   20 
 R/print_dust_html.R                       |  212 +-
 R/print_dust_latex.R                      |  155 +
 R/print_dust_latex_hhline.R               |only
 R/print_dust_markdown.R                   |    9 
 R/pvalString.R                            |   84 -
 R/redust.R                                |  147 +
 R/sprinkle.R                              | 1662 ++++++++++++-------
 R/sprinkle_colnames.R                     |  220 +-
 R/sprinkle_print_method.R                 |   67 
 R/sprinkle_table.R                        |   73 
 R/sysdata.rda                             |only
 R/zzz.R                                   |    2 
 README.md                                 |  105 -
 build/vignette.rds                        |binary
 inst/doc/advancedMagic.html               | 2497 +++++++++++++++---------------
 inst/doc/pixiedust.Rmd                    |    2 
 inst/doc/pixiedust.html                   | 1865 +++++++++++++---------
 inst/doc/sprinkles.R                      |   67 
 inst/doc/sprinkles.Rmd                    |   76 
 inst/doc/sprinkles.html                   | 1949 +++++++++++++++++++++--
 inst/save_sprinkles_rda.R                 |only
 inst/sprinkle_documentation.csv           |only
 inst/sprinkle_reference.csv               |only
 inst/sprinkles.csv                        |   66 
 man/as.data.frame.dust.Rd                 |   32 
 man/assert_match_arg.Rd                   |only
 man/chain.Rd                              |    8 
 man/compoundAssignment.Rd                 |    8 
 man/dust.Rd                               |  146 +
 man/glance_foot.Rd                        |   50 
 man/medley.Rd                             |   15 
 man/medley_all_borders.Rd                 |only
 man/pixie_count.Rd                        |   16 
 man/pixiedust.Rd                          |   20 
 man/pixieply.Rd                           |only
 man/print.dust.Rd                         |   27 
 man/pvalString.Rd                         |   22 
 man/sprinkle.Rd                           |  689 +++++---
 man/sprinkle_colnames.Rd                  |   18 
 man/tidy_levels_labels.Rd                 |   86 -
 tests/testthat/test-dust.R                |   51 
 tests/testthat/test-dust.grouped_df.R     |only
 tests/testthat/test-glance_foot.R         |   48 
 tests/testthat/test-medley.R              |   20 
 tests/testthat/test-medley_all_borders.R  |only
 tests/testthat/test-pixieply.R            |only
 tests/testthat/test-print.dust-explicit.R |only
 tests/testthat/test-print.dust.R          |    8 
 tests/testthat/test-print_dust_methods.R  |   15 
 tests/testthat/test-redust.R              |    3 
 tests/testthat/test-sprinkle_colnames.R   |   11 
 tests/testthat/test-sprinkle_dust_list.R  |only
 tests/testthat/test-sprinkle_table.R      |    6 
 tests/testthat/test-sprinkles.R           |  148 -
 tests/testthat/test-tidy_label_level.R    |   30 
 vignettes/pixiedust.Rmd                   |    2 
 vignettes/sprinkles.Rmd                   |   76 
 72 files changed, 7679 insertions(+), 4261 deletions(-)

More information about pixiedust at CRAN
Permanent link

New package lifecourse with initial version 1.0
Package: lifecourse
Type: Package
Title: Quantification of Lifecourse Fluidity
Version: 1.0
Date: 2016-03-18
Author: Glenna Nightingale
Maintainer: Glenna Nightingale <glenna.evans@gmail.com>
Description: Provides in built datasets and three functions.
License: GPL
Depends: TraMineR,graphics
Packaged: 2016-04-16 18:03:46 UTC; Glenna
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-04-17 19:22:54

More information about lifecourse at CRAN
Permanent link

New package imputeTestbench with initial version 0.1.0
Package: imputeTestbench
Type: Package
Title: Test Bench for Missing Data Imputing Models/Methods Comparison
Version: 0.1.0
Author: Neeraj Bokde
Maintainer: Neeraj Bokde <neerajdhanraj@gmail.com>
Description: Provides a Test bench for comparison of missing data imputation models/methods. It compares imputing methods with reference to RMSE, MAE or MAPE parameters. It allows to add new proposed methods to test bench and to compare with other methods. The function 'append_method()' allows to add multiple numbers of methods to the existing methods available in test bench.
Imports: ggplot2, imputeTS, reshape2, methods, stats
License: GPL
LazyData: TRUE
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-04-17 17:32:07 UTC; NEERAJ
Repository: CRAN
Date/Publication: 2016-04-17 20:11:34

More information about imputeTestbench at CRAN
Permanent link

Package GlobalOptions updated to version 0.0.10 with previous version 0.0.9 dated 2016-03-19

Title: Generate Functions to Get or Set Global Options
Description: It provides more controls on the option values such as validation and filtering on the values, making options invisible or private.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>

Diff between GlobalOptions versions 0.0.9 dated 2016-03-19 and 0.0.10 dated 2016-04-17

 DESCRIPTION                 |   10 +++++-----
 MD5                         |   19 ++++++++++---------
 NEWS                        |    6 ++++++
 R/class.R                   |    2 +-
 R/setGlobalOptions.R        |    8 ++++++--
 inst/doc/GlobalOptions.R    |    9 +++++++++
 inst/doc/GlobalOptions.Rmd  |   23 +++++++++++++++++++++++
 inst/doc/GlobalOptions.html |   32 ++++++++++++++++++++++++++++----
 tests/test-all.R            |    2 +-
 tests/testthat              |only
 vignettes/GlobalOptions.Rmd |   23 +++++++++++++++++++++++
 11 files changed, 112 insertions(+), 22 deletions(-)

More information about GlobalOptions at CRAN
Permanent link

Package glmbb updated to version 0.2 with previous version 0.1 dated 2016-04-13

Title: All Hierarchical or Graphical Models for Generalized Linear Model
Description: Find all hierarchical models of specified generalized linear model with information criterion (AIC, BIC, or AICc) within specified cutoff of minimum value. Alternatively, find all such graphical models. Use branch and bound algorithm so we do not have to fit all models.
Author: Charles J. Geyer <charlie@stat.umn.edu>.
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>

Diff between glmbb versions 0.1 dated 2016-04-13 and 0.2 dated 2016-04-17

 DESCRIPTION           |   15 ++++++++-------
 MD5                   |   16 +++++++++++-----
 NAMESPACE             |    4 ++++
 R/glmbb.R             |   41 +++++++++++++++++++++++++++++++----------
 R/graph.R             |only
 R/tidy.R              |    4 ++--
 man/glmbb.Rd          |   20 ++++++++++++++++----
 man/graph.Rd          |only
 tests/goo.R           |only
 tests/goo.Rout.save   |only
 tests/graph.R         |only
 tests/graph.Rout.save |only
 12 files changed, 72 insertions(+), 28 deletions(-)

More information about glmbb at CRAN
Permanent link

Package Matrix updated to version 1.2-5 with previous version 1.2-4 dated 2016-03-01

Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and operations on them using 'LAPACK' and 'SuiteSparse'.
Author: Douglas Bates <bates@stat.wisc.edu> and Martin Maechler
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>

Diff between Matrix versions 1.2-4 dated 2016-03-01 and 1.2-5 dated 2016-04-17

 DESCRIPTION                             |   14 -
 LICENCE                                 |only
 MD5                                     |   77 +++---
 R/AllClass.R                            |  209 +++++++----------
 R/denseMatrix.R                         |   31 +-
 R/diagMatrix.R                          |   90 ++++---
 R/indMatrix.R                           |    8 
 build/vignette.rds                      |binary
 inst/Doxyfile                           |  383 +++++++++++++++++++-------------
 inst/NEWS.Rd                            |   19 +
 inst/doc/Comparisons.pdf                |binary
 inst/doc/Design-issues.pdf              |binary
 inst/doc/Intro2Matrix.pdf               |binary
 inst/doc/Introduction.pdf               |binary
 inst/doc/sparseModels.pdf               |binary
 inst/po/de/LC_MESSAGES/R-Matrix.mo      |binary
 inst/po/en@quot/LC_MESSAGES/Matrix.mo   |binary
 inst/po/en@quot/LC_MESSAGES/R-Matrix.mo |binary
 inst/po/fr/LC_MESSAGES/Matrix.mo        |binary
 inst/po/fr/LC_MESSAGES/R-Matrix.mo      |binary
 inst/po/ko/LC_MESSAGES/R-Matrix.mo      |binary
 inst/po/pl/LC_MESSAGES/Matrix.mo        |binary
 inst/po/pl/LC_MESSAGES/R-Matrix.mo      |binary
 inst/test-tools-1.R                     |   20 +
 man/indMatrix-class.Rd                  |    3 
 po/Matrix.pot                           |  181 +++++++--------
 po/R-Matrix.pot                         |   31 ++
 po/R-de.po                              |   43 +++
 po/R-fr.po                              |   34 ++
 po/R-ko.po                              |   34 ++
 po/R-pl.po                              |   40 +++
 po/de.po                                |  215 +++++++++--------
 po/fr.po                                |  185 +++++++--------
 po/ko.po                                |  185 +++++++--------
 po/pl.po                                |  187 ++++++++-------
 src/Mutils.c                            |    1 
 src/chm_common.h                        |    2 
 src/dense.c                             |    3 
 tests/Simple.R                          |   13 -
 tests/matprod.R                         |   12 -
 40 files changed, 1173 insertions(+), 847 deletions(-)

More information about Matrix at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.