Title: Super Imposition by Translation and Rotation Growth Curve
Analysis
Description: Functions for fitting and plotting SITAR (Super Imposition by Translation And Rotation) growth curve models. SITAR is a shape-invariant model with a regression B-spline mean curve and subject-specific random effects on both the measurement and age scales.
Author: Tim Cole
Maintainer: Tim Cole <tim.cole@ucl.ac.uk>
Diff between sitar versions 1.0.5 dated 2016-04-12 and 1.0.6 dated 2016-05-05
sitar-1.0.5/sitar/man/funcall.Rd |only sitar-1.0.5/sitar/man/xaxsd.Rd |only sitar-1.0.6/sitar/DESCRIPTION | 8 +- sitar-1.0.6/sitar/MD5 | 18 ++-- sitar-1.0.6/sitar/NEWS | 16 ++++ sitar-1.0.6/sitar/R/plot.sitar.R | 37 +++------- sitar-1.0.6/sitar/R/predict.sitar.R | 120 ++++++++++++++++++++------------- sitar-1.0.6/sitar/R/xyadj.R | 10 -- sitar-1.0.6/sitar/man/funcall.rd |only sitar-1.0.6/sitar/man/predict.sitar.Rd | 19 ++--- sitar-1.0.6/sitar/man/xaxsd.rd |only sitar-1.0.6/sitar/man/xyadj.Rd | 11 +-- 12 files changed, 132 insertions(+), 107 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.6.700.3.0 dated 2016-04-06 and 0.6.700.6.0 dated 2016-05-05
ChangeLog | 18 ++++++++ DESCRIPTION | 8 +-- MD5 | 46 ++++++++++----------- build/vignette.rds |binary inst/NEWS.Rd | 18 ++++++++ inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/RcppArmadilloAs.h | 33 ++++++--------- inst/include/RcppArmadilloConfig.h | 5 +- inst/include/armadillo_bits/Mat_meat.hpp | 20 ++++----- inst/include/armadillo_bits/arma_ostream_bones.hpp | 18 ++++---- inst/include/armadillo_bits/arma_ostream_meat.hpp | 8 +++ inst/include/armadillo_bits/arma_version.hpp | 4 - inst/include/armadillo_bits/compiler_setup.hpp | 23 ++-------- inst/include/armadillo_bits/fn_clamp.hpp | 1 inst/include/armadillo_bits/fn_kron.hpp | 45 ++++++++++++++++++++ inst/include/armadillo_bits/fn_reshape.hpp | 8 +++ inst/include/armadillo_bits/fn_resize.hpp | 8 +++ inst/include/armadillo_bits/fn_trunc_exp.hpp | 4 - inst/include/armadillo_bits/fn_trunc_log.hpp | 6 +- inst/include/armadillo_bits/glue_kron_meat.hpp | 8 +++ inst/include/armadillo_bits/op_find_meat.hpp | 20 ++++----- inst/unitTests/cpp/sparse.cpp | 19 ++++++++ inst/unitTests/runit.sparse.R | 17 +++++++ 24 files changed, 232 insertions(+), 105 deletions(-)
Title: Partial Orders in Socio-Economics
Description: Implements basic partial order tools for multidimensional poverty evaluation with ordinal variables. Its main goal is to provide socio-economic scholars with an integrated set of elementary functions for multidimensional poverty evaluation, based on ordinal information. The package is organized in four main parts. The first two comprise functions for data management and basic partial order analysis; the third and the fourth are devoted to evaluation and implement both the poset-based approach and a more classical counting procedure.
Author: Alberto Arcagni [aut, cre], Marco Fattore [ctb]
Maintainer: Alberto Arcagni <alberto.arcagni@unimib.it>
Diff between parsec versions 1.1.1 dated 2016-04-28 and 1.1.2 dated 2016-05-05
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/pop2prof.R | 2 +- man/parsec-package.Rd | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species
occurrence in dynamic landscapes, simulate future landscape occupation and
evaluate range expansion when new empty patches are available (e.g. as a
result of climate change).
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro
Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>
Diff between MetaLandSim versions 0.5 dated 2016-04-11 and 0.5.1 dated 2016-05-05
DESCRIPTION | 8 MD5 | 24 +- R/MetaLandSim.GUI.R | 24 +- R/matrix.graph.R | 2 R/range_expansion.R | 351 ++++++++++++-------------------------- R/range_raster.R | 37 ++-- R/span.graph.R | 10 - R/species.graph.R | 2 inst/doc/MetaLandSim.pdf |binary inst/doc/landscape_simulation.pdf |binary inst/doc/parametrization.pdf |binary inst/doc/range_expansion.pdf |binary man/MetaLandSim-package.Rd | 4 13 files changed, 171 insertions(+), 291 deletions(-)
Title: Statistical Toolbox for Radiometric Geochronology
Description: An R implementation of Ken Ludwig's popular Isoplot add-in to Microsoft Excel. Currently plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams, taking into account error correlations. Future versions will include functionality for the Ar-Ar, Rb-Sr, Sm-Nd, Re-Os, U-Th-He, fission track and cosmogenic nuclide methods, including isochrons, age spectra, ternary diagrams, kernel density estimates, radial plots, banana diagrams and multidimensional scaling plots. A graphical user interface is provided as an RStudio Shiny app.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 0.1 dated 2016-04-21 and 0.2 dated 2016-05-05
IsoplotR-0.1/IsoplotR/R/settings.R |only IsoplotR-0.1/IsoplotR/man/as.UPb.Rd |only IsoplotR-0.1/IsoplotR/man/get.Pb206U238.Rd |only IsoplotR-0.1/IsoplotR/man/get.Pb206U238age.Rd |only IsoplotR-0.1/IsoplotR/man/get.Pb207Pb206.Rd |only IsoplotR-0.1/IsoplotR/man/get.Pb207Pb206age.Rd |only IsoplotR-0.1/IsoplotR/man/get.Pb207U235.Rd |only IsoplotR-0.1/IsoplotR/man/get.Pb207U235age.Rd |only IsoplotR-0.1/IsoplotR/man/get.covmat.UPb.Rd |only IsoplotR-0.1/IsoplotR/man/lambda.err.Rd |only IsoplotR-0.1/IsoplotR/man/names.UPb.Rd |only IsoplotR-0.1/IsoplotR/man/read.UPb.Rd |only IsoplotR-0.1/IsoplotR/man/subset.UPb.Rd |only IsoplotR-0.2/IsoplotR/DESCRIPTION | 8 - IsoplotR-0.2/IsoplotR/MD5 | 48 ++---- IsoplotR-0.2/IsoplotR/NAMESPACE | 15 - IsoplotR-0.2/IsoplotR/R/UPb.R | 190 ++++++------------------- IsoplotR-0.2/IsoplotR/R/concordia.R | 145 +++++++++++-------- IsoplotR-0.2/IsoplotR/R/constants.R | 87 ++++++++--- IsoplotR-0.2/IsoplotR/R/documentation.R | 2 IsoplotR-0.2/IsoplotR/R/errorellipse.R | 19 +- IsoplotR-0.2/IsoplotR/R/io.R | 91 +++++------ IsoplotR-0.2/IsoplotR/R/toolbox.R | 47 +++++- IsoplotR-0.2/IsoplotR/inst/UPb.csv | 22 +- IsoplotR-0.2/IsoplotR/man/I.A.Rd | 16 +- IsoplotR-0.2/IsoplotR/man/UPb.Rd | 2 IsoplotR-0.2/IsoplotR/man/concordia.plot.Rd | 16 +- IsoplotR-0.2/IsoplotR/man/get.covmat.Rd |only IsoplotR-0.2/IsoplotR/man/get.ellipse.Rd | 11 - IsoplotR-0.2/IsoplotR/man/get.ratios.Rd |only IsoplotR-0.2/IsoplotR/man/lambda.Rd | 6 IsoplotR-0.2/IsoplotR/man/read.data.Rd |only IsoplotR-0.2/IsoplotR/man/read.matrix.Rd | 19 +- 33 files changed, 378 insertions(+), 366 deletions(-)
Title: Tools for Spatial Data
Description: For curve, surface and function fitting with an emphasis
on splines, spatial data and spatial statistics. The major methods
include cubic, and thin plate splines, Kriging and compact
covariances for large data sets. The splines and Kriging methods are
supported by functions that can determine the smoothing parameter
(nugget and sill variance) and other covariance parameters by cross
validation and also by restricted maximum likelihood. For Kriging
there is an easy to use function that also estimates the correlation
scale (range). A major feature is that any covariance function
implemented in R and following a simple fields format can be used for
spatial prediction. There are also many useful functions for plotting
and working with spatial data as images. This package also contains
an implementation of sparse matrix methods for large spatial data
sets and currently requires the sparse matrix (spam) package. Use
help(fields) to get started and for an overview. The fields source
code is deliberately commented and provides useful explanations of
numerical details in addition to the manual pages. The commented
source code can be viewed by expanding the source code file (ending in tar.gz)
and looking in the R subdirectory. Please cite fields along with its
DOI in your publications!
Author: Douglas Nychka [aut, cre], Reinhard Furrer [aut], John Paige [aut], Stephan Sain [aut]
Maintainer: Douglas Nychka <nychka@ucar.edu>
Diff between fields versions 8.3-6 dated 2016-01-04 and 8.4-1 dated 2016-05-05
fields-8.3-6/fields/R/Matern.MLE.R |only fields-8.3-6/fields/R/Wendland.R |only fields-8.3-6/fields/R/fields.nearest.dist.R |only fields-8.3-6/fields/R/predictDerivative.R |only fields-8.3-6/fields/R/predictSurfaceSE.R |only fields-8.3-6/fields/R/temp.R |only fields-8.4-1/fields/DESCRIPTION | 50 - fields-8.4-1/fields/MD5 | 564 ++++++-------- fields-8.4-1/fields/R/BD.R | 24 fields-8.4-1/fields/R/ChicagoO3.R | 24 fields-8.4-1/fields/R/Exponential.R | 36 fields-8.4-1/fields/R/ExponentialUpper.R | 29 fields-8.4-1/fields/R/Krig.family.R | 57 - fields-8.4-1/fields/R/MLE.Matern.R | 23 fields-8.4-1/fields/R/MLESpatialProcess.R | 22 fields-8.4-1/fields/R/MLESpatialProcess.fast.R | 35 fields-8.4-1/fields/R/MLEfast.R | 22 fields-8.4-1/fields/R/Matern.R | 34 fields-8.4-1/fields/R/Matern.parameters.R | 20 fields-8.4-1/fields/R/QTps.R | 20 fields-8.4-1/fields/R/REMLtest.R | 26 fields-8.4-1/fields/R/RMprecip.R | 24 fields-8.4-1/fields/R/RadialBasis.R | 20 fields-8.4-1/fields/R/SUBSCRIPTING.spatial.design.R | 24 fields-8.4-1/fields/R/Tps.R | 24 fields-8.4-1/fields/R/US.R | 24 fields-8.4-1/fields/R/add.image.R | 24 fields-8.4-1/fields/R/arrow.plot.R | 24 fields-8.4-1/fields/R/as.image.R | 24 fields-8.4-1/fields/R/as.surface.R | 24 fields-8.4-1/fields/R/bisection.search.R | 24 fields-8.4-1/fields/R/bplot.family.R | 24 fields-8.4-1/fields/R/cat.matrix.R | 24 fields-8.4-1/fields/R/cat.to.list.R | 24 fields-8.4-1/fields/R/ceiling2.R | 24 fields-8.4-1/fields/R/coef.Krig.R | 24 fields-8.4-1/fields/R/color.scale.R | 21 fields-8.4-1/fields/R/colorbar.plot.R | 24 fields-8.4-1/fields/R/compactToMat.R | 30 fields-8.4-1/fields/R/cover.design.R | 24 fields-8.4-1/fields/R/cubic.cov.R | 24 fields-8.4-1/fields/R/describe.R | 24 fields-8.4-1/fields/R/discretize.image.R | 24 fields-8.4-1/fields/R/double.exp.R | 24 fields-8.4-1/fields/R/drape.color.R | 24 fields-8.4-1/fields/R/drape.plot.R | 24 fields-8.4-1/fields/R/dyadic.2check.R | 24 fields-8.4-1/fields/R/dyadic.check.R | 24 fields-8.4-1/fields/R/evlpoly.R | 24 fields-8.4-1/fields/R/evlpoly2.R | 24 fields-8.4-1/fields/R/exp.cov.R | 24 fields-8.4-1/fields/R/exp.earth.cov.R | 24 fields-8.4-1/fields/R/exp.image.cov.R | 24 fields-8.4-1/fields/R/exp.simple.cov.R | 24 fields-8.4-1/fields/R/fast.1way.R | 24 fields-8.4-1/fields/R/fastTps.MLE.R | 48 - fields-8.4-1/fields/R/fastTps.family.R | 25 fields-8.4-1/fields/R/fields.color.picker.R | 24 fields-8.4-1/fields/R/fields.convert.grid.R | 24 fields-8.4-1/fields/R/fields.derivative.poly.R | 24 fields-8.4-1/fields/R/fields.diagonalize.R | 24 fields-8.4-1/fields/R/fields.diagonalize2.R | 24 fields-8.4-1/fields/R/fields.duplicated.matrix.R | 24 fields-8.4-1/fields/R/fields.mkpoly.R | 24 fields-8.4-1/fields/R/fields.rdist.near.R | 24 fields-8.4-1/fields/R/fields.style.R | 24 fields-8.4-1/fields/R/fields.x.to.grid.R | 24 fields-8.4-1/fields/R/find.upcross.R | 24 fields-8.4-1/fields/R/fitted.Krig.R | 24 fields-8.4-1/fields/R/flame.R | 24 fields-8.4-1/fields/R/gauss.cov.R | 24 fields-8.4-1/fields/R/gcv.Krig.R | 24 fields-8.4-1/fields/R/gcv.sreg.R | 20 fields-8.4-1/fields/R/golden.section.search.R | 20 fields-8.4-1/fields/R/image.family.R | 32 fields-8.4-1/fields/R/image.plot.R | 24 fields-8.4-1/fields/R/image.smooth.R | 24 fields-8.4-1/fields/R/in.poly.R | 24 fields-8.4-1/fields/R/interp.surface.R | 24 fields-8.4-1/fields/R/interp.surface.grid.R | 24 fields-8.4-1/fields/R/larry.colors.R | 21 fields-8.4-1/fields/R/mKrig.MLE.R | 24 fields-8.4-1/fields/R/mKrig.MLE.joint.R | 24 fields-8.4-1/fields/R/mKrig.R | 24 fields-8.4-1/fields/R/mKrig.family.R | 24 fields-8.4-1/fields/R/make.surface.grid.R | 24 fields-8.4-1/fields/R/matern.image.cov.R | 24 fields-8.4-1/fields/R/minimax.crit.R | 24 fields-8.4-1/fields/R/minitri.R | 24 fields-8.4-1/fields/R/parse.grid.list.R | 24 fields-8.4-1/fields/R/plot.Krig.R | 24 fields-8.4-1/fields/R/plot.spatial.design.R | 24 fields-8.4-1/fields/R/plot.spatialProcess.R | 24 fields-8.4-1/fields/R/plot.sreg.R | 24 fields-8.4-1/fields/R/plot.surface.R | 24 fields-8.4-1/fields/R/plot.vgram.matrix.R | 24 fields-8.4-1/fields/R/poly.image.R | 24 fields-8.4-1/fields/R/predict.Krig.R | 24 fields-8.4-1/fields/R/predict.interp.surface.R | 24 fields-8.4-1/fields/R/predict.sreg.R | 24 fields-8.4-1/fields/R/predictDerivative.Krig.R | 24 fields-8.4-1/fields/R/predictSE.R | 24 fields-8.4-1/fields/R/predictSEUsingKrigA.R | 24 fields-8.4-1/fields/R/predictSurface.Krig.R | 24 fields-8.4-1/fields/R/predictSurface.family.R | 24 fields-8.4-1/fields/R/predictSurfaceSE.family.R | 24 fields-8.4-1/fields/R/print.Krig.R | 24 fields-8.4-1/fields/R/print.spatial.design.R | 24 fields-8.4-1/fields/R/print.sreg.R | 24 fields-8.4-1/fields/R/print.summary.Krig.R | 24 fields-8.4-1/fields/R/print.summary.spatial.design.R | 24 fields-8.4-1/fields/R/print.summary.spatialProcess.R | 24 fields-8.4-1/fields/R/print.summary.sreg.R | 24 fields-8.4-1/fields/R/printGCVWarnings.R | 20 fields-8.4-1/fields/R/qr.q2ty.R | 24 fields-8.4-1/fields/R/qr.yq2.R | 24 fields-8.4-1/fields/R/qsreg.family.R | 24 fields-8.4-1/fields/R/quickPrint.R | 20 fields-8.4-1/fields/R/quilt.plot.R | 24 fields-8.4-1/fields/R/rad.cov.R | 24 fields-8.4-1/fields/R/rad.image.cov.R | 24 fields-8.4-1/fields/R/rad.simple.cov.R | 24 fields-8.4-1/fields/R/radbas.constant.R | 24 fields-8.4-1/fields/R/rat.diet.R | 24 fields-8.4-1/fields/R/rdist.R | 24 fields-8.4-1/fields/R/rdist.earth.R | 24 fields-8.4-1/fields/R/rdist.earth.vec.R | 24 fields-8.4-1/fields/R/rdist.vec.R | 24 fields-8.4-1/fields/R/residuals.Krig.R | 24 fields-8.4-1/fields/R/ribbon.plot.R | 24 fields-8.4-1/fields/R/set.panel.R | 24 fields-8.4-1/fields/R/setup.image.smooth.R | 24 fields-8.4-1/fields/R/sim.Krig.R | 24 fields-8.4-1/fields/R/sim.Krig.approx.R | 24 fields-8.4-1/fields/R/sim.mKrig.approx.R | 24 fields-8.4-1/fields/R/sim.rf.R | 24 fields-8.4-1/fields/R/smooth.2d.R | 24 fields-8.4-1/fields/R/spam_2lz.R | 24 fields-8.4-1/fields/R/spatialProcess.R | 20 fields-8.4-1/fields/R/splint.R | 24 fields-8.4-1/fields/R/sreg.family.R | 25 fields-8.4-1/fields/R/stationary.cov.R | 24 fields-8.4-1/fields/R/stationary.image.cov.R | 24 fields-8.4-1/fields/R/stationary.taper.cov.R | 24 fields-8.4-1/fields/R/stats.R | 24 fields-8.4-1/fields/R/stats.bin.R | 24 fields-8.4-1/fields/R/summary.Krig.R | 24 fields-8.4-1/fields/R/summary.ncdf.R | 24 fields-8.4-1/fields/R/summary.spatial.design.R | 24 fields-8.4-1/fields/R/summary.spatialProcess.R | 24 fields-8.4-1/fields/R/summary.sreg.R | 24 fields-8.4-1/fields/R/summaryGCV.Krig.R | 24 fields-8.4-1/fields/R/summaryGCV.sreg.R | 24 fields-8.4-1/fields/R/supportsArg.R | 24 fields-8.4-1/fields/R/surface.family.R | 24 fields-8.4-1/fields/R/test.for.zero.R | 24 fields-8.4-1/fields/R/tim.colors.R | 24 fields-8.4-1/fields/R/transformx.R | 24 fields-8.4-1/fields/R/unrollZGrid.R | 20 fields-8.4-1/fields/R/unscale.R | 24 fields-8.4-1/fields/R/vgram.family.R | 159 ++- fields-8.4-1/fields/R/vgram.matrix.R | 24 fields-8.4-1/fields/R/wendland.family.R | 24 fields-8.4-1/fields/R/wendland.image.cov.R | 24 fields-8.4-1/fields/R/world.R | 24 fields-8.4-1/fields/R/xline.R | 24 fields-8.4-1/fields/R/yline.R | 24 fields-8.4-1/fields/inst |only fields-8.4-1/fields/man/BD.Rd | 24 fields-8.4-1/fields/man/CO.Rd | 24 fields-8.4-1/fields/man/CO2.Rd | 20 fields-8.4-1/fields/man/CovarianceUpper.Rd | 42 - fields-8.4-1/fields/man/Exponential.Rd | 55 - fields-8.4-1/fields/man/FORTRAN.internal.Rd | 20 fields-8.4-1/fields/man/Krig.Amatrix.Rd | 24 fields-8.4-1/fields/man/Krig.Rd | 24 fields-8.4-1/fields/man/Krig.engine.default.Rd | 24 fields-8.4-1/fields/man/Krig.null.function.Rd | 24 fields-8.4-1/fields/man/Krig.replicates.Rd | 20 fields-8.4-1/fields/man/MLESpatialProcess.Rd | 20 fields-8.4-1/fields/man/NorthAmericanRainfall.Rd | 20 fields-8.4-1/fields/man/QTps.Rd | 20 fields-8.4-1/fields/man/RCMexample.Rd | 20 fields-8.4-1/fields/man/REML.test.Rd | 20 fields-8.4-1/fields/man/RMprecip.Rd | 24 fields-8.4-1/fields/man/Tps.Rd | 29 fields-8.4-1/fields/man/US.Rd | 24 fields-8.4-1/fields/man/US.dat.Rd | 24 fields-8.4-1/fields/man/Wendland.Rd | 24 fields-8.4-1/fields/man/WorldBank.Rd | 20 fields-8.4-1/fields/man/add.image.Rd | 24 fields-8.4-1/fields/man/arrow.plot.Rd | 24 fields-8.4-1/fields/man/as.image.Rd | 24 fields-8.4-1/fields/man/as.surface.Rd | 24 fields-8.4-1/fields/man/bplot.Rd | 24 fields-8.4-1/fields/man/bplot.xy.Rd | 24 fields-8.4-1/fields/man/colorbar.plot.Rd | 24 fields-8.4-1/fields/man/compactToMat.Rd | 20 fields-8.4-1/fields/man/cover.design.Rd | 24 fields-8.4-1/fields/man/drape.plot.Rd | 24 fields-8.4-1/fields/man/exp.cov.Rd | 24 fields-8.4-1/fields/man/fields-internal.Rd | 28 fields-8.4-1/fields/man/fields-stuff.Rd | 24 fields-8.4-1/fields/man/fields.Rd | 24 fields-8.4-1/fields/man/fields.grid.Rd | 24 fields-8.4-1/fields/man/fields.hints.Rd | 24 fields-8.4-1/fields/man/fields.tests.Rd | 24 fields-8.4-1/fields/man/flame.Rd | 24 fields-8.4-1/fields/man/gcv.Krig.Rd | 24 fields-8.4-1/fields/man/grid.list.Rd | 24 fields-8.4-1/fields/man/image.cov.Rd | 24 fields-8.4-1/fields/man/image.plot.Rd | 24 fields-8.4-1/fields/man/image.smooth.Rd | 24 fields-8.4-1/fields/man/image2lz.Rd | 24 fields-8.4-1/fields/man/interp.surface.Rd | 24 fields-8.4-1/fields/man/lennon.Rd | 24 fields-8.4-1/fields/man/mKrig.MLE.Rd | 20 fields-8.4-1/fields/man/mKrig.Rd | 20 fields-8.4-1/fields/man/minitri.Rd | 24 fields-8.4-1/fields/man/ozone.Rd | 24 fields-8.4-1/fields/man/ozone2.Rd | 24 fields-8.4-1/fields/man/plot.Krig.Rd | 24 fields-8.4-1/fields/man/plot.surface.Rd | 24 fields-8.4-1/fields/man/poly.image.Rd | 20 fields-8.4-1/fields/man/predict.Krig.Rd | 24 fields-8.4-1/fields/man/predictSE.Krig.Rd | 24 fields-8.4-1/fields/man/predictSurface.Rd | 24 fields-8.4-1/fields/man/print.Krig.Rd | 24 fields-8.4-1/fields/man/pushpin.Rd | 24 fields-8.4-1/fields/man/qsreg.Rd | 24 fields-8.4-1/fields/man/quilt.plot.Rd | 24 fields-8.4-1/fields/man/rat.diet.Rd | 24 fields-8.4-1/fields/man/rdist.Rd | 24 fields-8.4-1/fields/man/rdist.earth.Rd | 24 fields-8.4-1/fields/man/ribbon.plot.Rd | 24 fields-8.4-1/fields/man/set.panel.Rd | 24 fields-8.4-1/fields/man/sim.Krig.Rd | 24 fields-8.4-1/fields/man/sim.rf.Rd | 96 +- fields-8.4-1/fields/man/smooth.2d.Rd | 24 fields-8.4-1/fields/man/spam2lz.Rd | 24 fields-8.4-1/fields/man/spatialProcess.Rd | 20 fields-8.4-1/fields/man/splint.Rd | 24 fields-8.4-1/fields/man/sreg.Rd | 24 fields-8.4-1/fields/man/stats.Rd | 24 fields-8.4-1/fields/man/stats.bin.Rd | 24 fields-8.4-1/fields/man/summary.Krig.Rd | 24 fields-8.4-1/fields/man/summary.ncdf.Rd | 24 fields-8.4-1/fields/man/supportsArg.Rd | 20 fields-8.4-1/fields/man/surface.Krig.Rd | 24 fields-8.4-1/fields/man/tim.colors.Rd | 24 fields-8.4-1/fields/man/transformx.Rd | 24 fields-8.4-1/fields/man/vgram.Rd | 49 - fields-8.4-1/fields/man/vgram.matrix.Rd | 24 fields-8.4-1/fields/man/world.Rd | 28 fields-8.4-1/fields/man/xline.Rd | 24 fields-8.4-1/fields/man/yline.Rd | 24 fields-8.4-1/fields/src/ExponentialUpperC.c | 14 fields-8.4-1/fields/src/compactToMatC.c | 8 fields-8.4-1/fields/src/compactToMatCOLD.c |only fields-8.4-1/fields/tests/Krig.Z.test.Rout.save | 9 fields-8.4-1/fields/tests/Krig.se.W.Rout.save | 9 fields-8.4-1/fields/tests/Krig.se.grid.test.Rout.save | 9 fields-8.4-1/fields/tests/Krig.se.test.Rout.save | 9 fields-8.4-1/fields/tests/Krig.test.Rout.save | 9 fields-8.4-1/fields/tests/Krig.test.W.Rout.save | 9 fields-8.4-1/fields/tests/KrigGCVREML.test.Rout.save | 9 fields-8.4-1/fields/tests/Likelihood.test.Rout.save | 9 fields-8.4-1/fields/tests/REMLest.test.R | 2 fields-8.4-1/fields/tests/REMLest.test.Rout.save | 9 fields-8.4-1/fields/tests/Tps.test.Rout.save | 9 fields-8.4-1/fields/tests/Wend.test.Rout.save | 9 fields-8.4-1/fields/tests/cov.test.Rout.save | 9 fields-8.4-1/fields/tests/derivative.test.Rout.save | 9 fields-8.4-1/fields/tests/diag.multiply.test.Rout.save | 9 fields-8.4-1/fields/tests/diagonal2.test.Rout.save | 9 fields-8.4-1/fields/tests/evlpoly.test.Rout.save | 9 fields-8.4-1/fields/tests/fastTpsPredict.test.Rout.save | 9 fields-8.4-1/fields/tests/mKrig.MLE.test.Rout.save | 9 fields-8.4-1/fields/tests/mKrig.Z.Rout.save | 9 fields-8.4-1/fields/tests/mKrig.parameters.test.Rout.save | 9 fields-8.4-1/fields/tests/mKrig.se.test.Rout.save | 9 fields-8.4-1/fields/tests/mKrig.test.Rout.save | 9 fields-8.4-1/fields/tests/misc.test.Rout.save | 9 fields-8.4-1/fields/tests/spam.test.Rout.save | 9 fields-8.4-1/fields/tests/sreg.test.Rout.save | 9 fields-8.4-1/fields/tests/test.cov.Rout.save | 9 fields-8.4-1/fields/tests/vgram.test.Rout.save | 9 287 files changed, 5625 insertions(+), 1484 deletions(-)
Title: Flexible Modelling Functions for Epidemiological Data Analysis
Description: Provides flexible model fitting used in epidemiological data
analysis by a unified model specification, along with some data manipulation
functions. This package covers fitting of variety models including Cox
regression models, linear regression models, Poisson regression models, logistic
models and others whose likelihood is expressed in negative binomial, gamma and
Weibull distributions.
Author: Kazutaka Doi [aut,cre],
Kei Sakabe [ctb],
Masataka Taruri [ctb]
Maintainer: Kazutaka Doi <kztkdi@gmail.com>
Diff between epifit versions 0.0.6 dated 2016-03-01 and 0.1.0 dated 2016-05-05
DESCRIPTION | 8 MD5 | 24 - NAMESPACE | 4 NEWS | 27 + R/AIC.epifit.R | 4 R/epifit.R | 842 +++++++++++++++++++++++++++----------------------- R/getIndex.R |only R/modules.R | 779 +++++++++++++++++++++++----------------------- R/selectByIndex.R |only R/selectVariable.R |only man/AIC.epifit.Rd | 4 man/epifit.Rd | 67 ++- man/getIndex.Rd |only man/selectByIndex.Rd |only man/selectVariable.Rd |only src/mumul.cpp |only src/mumul.h |only 17 files changed, 950 insertions(+), 809 deletions(-)
Title: Survival Analysis
Description: Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] (original S->R port and maintainer until 2009)
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>
Diff between survival versions 2.39-2 dated 2016-04-16 and 2.39-3 dated 2016-05-05
survival-2.39-2/survival/cleanup |only survival-2.39-2/survival/cleanup.win |only survival-2.39-2/survival/noweb/casecohort.Rnw |only survival-2.39-2/survival/noweb/concordance.old.Rnw |only survival-2.39-2/survival/noweb/figures |only survival-2.39-2/survival/noweb/predict.coxph.Rnw |only survival-2.39-2/survival/noweb/ratetable.Rnw |only survival-2.39-2/survival/tests/plot.R |only survival-2.39-2/survival/tests/plot1.pdf.save |only survival-2.39-3/survival/DESCRIPTION | 6 survival-2.39-3/survival/MD5 | 47 survival-2.39-3/survival/ToDo | 3 survival-2.39-3/survival/inst/NEWS.Rd | 12 survival-2.39-3/survival/inst/doc/adjcurve.pdf |binary survival-2.39-3/survival/inst/doc/compete.R | 530 +++++++++- survival-2.39-3/survival/inst/doc/compete.Rnw | 1028 ++++++++++++++++----- survival-2.39-3/survival/inst/doc/compete.pdf |binary survival-2.39-3/survival/inst/doc/splines.pdf |binary survival-2.39-3/survival/inst/doc/tests.pdf |binary survival-2.39-3/survival/inst/doc/timedep.pdf |binary survival-2.39-3/survival/inst/doc/validate.pdf |binary survival-2.39-3/survival/noweb/survfitCI.Rnw | 2 survival-2.39-3/survival/noweb/survfitms.Rnw | 5 survival-2.39-3/survival/noweb/tmerge.Rnw | 2 survival-2.39-3/survival/src/coxfit6.c | 1 survival-2.39-3/survival/tests/tt.Rout.save | 6 survival-2.39-3/survival/vignettes/compete.Rnw | 479 +++++---- survival-2.39-3/survival/vignettes/mstate.rda |only survival-2.39-3/survival/vignettes/refer.bib | 7 29 files changed, 1557 insertions(+), 571 deletions(-)
Title: Multi-Way Standard Error Clustering
Description: Exports two functions implementing
multi-way clustering using the method suggested by Cameron, Gelbach, &
Miller (2011) and cluster (or block)
bootstrapping for estimating variance-covariance matrices. Normal one and
two-way clustering matches the results of other common statistical
packages. Missing values are handled transparently and rudimentary
parallelization support is provided.
Author: Nathaniel Graham and Mahmood Arai and Björn Hagströmer
Maintainer: Nathaniel Graham <npgraham1@gmail.com>
Diff between multiwayvcov versions 1.2.2 dated 2015-09-25 and 1.2.3 dated 2016-05-05
DESCRIPTION | 11 +++--- MD5 | 16 +++++---- NAMESPACE | 3 + NEWS |only R/cluster_boot.r | 37 +++++++++++++++++----- R/cluster_vcov.r | 77 +++++++++++++++++++++++++++++----------------- build |only man/cluster.boot.Rd | 51 +++++++++++++++++++++--------- man/cluster.vcov.Rd | 87 +++++++++++++++++++++++++++++++--------------------- man/petersen.Rd | 2 - 10 files changed, 186 insertions(+), 98 deletions(-)
Title: Penalized Likelihood Estimation and Dynamic Prediction under the
Joint Frailty-Copula Models Between Tumour Progression and
Death for Meta-Analysis
Description: Perform the Cox regression and dynamic prediction under the joint frailty-copula model between tumour progression and death for meta-analysis.
The method is applicable for meta-analysis combining several studies or for cluster survival data.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between joint.Cox versions 2.4 dated 2016-02-24 and 2.5 dated 2016-05-05
DESCRIPTION | 16 ++++---- MD5 | 26 ++++++++----- R/F.window.R | 41 +++------------------ R/F.windows.R | 4 +- R/I.spline.R |only R/M.spline.R |only R/jointCox.indep.reg.R | 73 +++++++++++---------------------------- R/jointCox.reg.R | 86 ++++++++++++++-------------------------------- man/F.window.Rd | 25 +------------ man/F.windows.Rd | 29 +++------------ man/I.spline.Rd |only man/M.spline.Rd |only man/dataOvarian.Rd | 7 ++- man/joint.Cox-package.Rd | 9 ++-- man/jointCox.indep.reg.Rd | 37 ++++++++----------- man/jointCox.reg.Rd | 34 +++++++----------- 16 files changed, 128 insertions(+), 259 deletions(-)
Title: Ecological Niche in R and GRASS
Description: A set of tools for the analysis of ecological niche of species and calculation of habitat suitability maps.
Author: Fernando Canovas, Chiara Magliozzi, Jose Antonio Palazon-Ferrando, Frederico Mestre, Mercedes Gonzalez-Wanguemert
Maintainer: Fernando Garcia Canovas <fcgarcia@ualg.pt>
Diff between ENiRG versions 0.1 dated 2014-10-09 and 1.0 dated 2016-05-05
ENiRG-0.1/ENiRG/vignettes/figures/ordination.png |only ENiRG-1.0/ENiRG/ChangeLog |only ENiRG-1.0/ENiRG/DESCRIPTION | 14 - ENiRG-1.0/ENiRG/MD5 | 101 ++++---- ENiRG-1.0/ENiRG/NAMESPACE | 17 + ENiRG-1.0/ENiRG/R/classify.map.R | 11 ENiRG-1.0/ENiRG/R/enirg.GUI.R | 254 +++++++++++---------- ENiRG-1.0/ENiRG/R/enirg.R | 130 +++++----- ENiRG-1.0/ENiRG/R/enirg.plot.R | 47 ++- ENiRG-1.0/ENiRG/R/enirg.predict.R | 183 ++++++--------- ENiRG-1.0/ENiRG/R/import.egvs.R | 2 ENiRG-1.0/ENiRG/R/list.maps.R | 10 ENiRG-1.0/ENiRG/R/map.info.R | 15 - ENiRG-1.0/ENiRG/R/stdz.maps.R | 7 ENiRG-1.0/ENiRG/build/vignette.rds |binary ENiRG-1.0/ENiRG/data/apis.enirg.rda |binary ENiRG-1.0/ENiRG/data/apis.hsm.rda |binary ENiRG-1.0/ENiRG/data/cbi.results.rda |binary ENiRG-1.0/ENiRG/inst/CITATION | 9 ENiRG-1.0/ENiRG/inst/doc/vignette.pdf |binary ENiRG-1.0/ENiRG/inst/doc/vignette.rnw | 220 +++++++++++------- ENiRG-1.0/ENiRG/inst/doc/vignette2.pdf |binary ENiRG-1.0/ENiRG/inst/doc/vignette2.rnw | 13 - ENiRG-1.0/ENiRG/inst/ext/mask.asc |only ENiRG-1.0/ENiRG/inst/ext/mask.prj |only ENiRG-1.0/ENiRG/inst/ext/mntcm.asc | 174 +++++++------- ENiRG-1.0/ENiRG/inst/ext/mntcm.prj |only ENiRG-1.0/ENiRG/inst/ext/mxtwm.asc | 174 +++++++------- ENiRG-1.0/ENiRG/inst/ext/mxtwm.prj |only ENiRG-1.0/ENiRG/inst/ext/rfann.asc | 174 +++++++------- ENiRG-1.0/ENiRG/inst/ext/rfann.prj |only ENiRG-1.0/ENiRG/inst/ext/rfdm.asc | 174 +++++++------- ENiRG-1.0/ENiRG/inst/ext/rfdm.prj |only ENiRG-1.0/ENiRG/inst/ext/rfwm.asc | 174 +++++++------- ENiRG-1.0/ENiRG/inst/ext/rfwm.prj |only ENiRG-1.0/ENiRG/inst/ext/tann.asc | 174 +++++++------- ENiRG-1.0/ENiRG/inst/ext/tann.prj |only ENiRG-1.0/ENiRG/man/ENiRG-package.Rd | 34 +- ENiRG-1.0/ENiRG/man/apis.enirg.Rd | 22 + ENiRG-1.0/ENiRG/man/apis.hsm.Rd | 12 ENiRG-1.0/ENiRG/man/boyce.Rd | 29 +- ENiRG-1.0/ENiRG/man/cbi.results.Rd | 19 - ENiRG-1.0/ENiRG/man/classify.map.Rd | 21 - ENiRG-1.0/ENiRG/man/enirg.GUI.Rd | 10 ENiRG-1.0/ENiRG/man/enirg.Rd | 81 ++++-- ENiRG-1.0/ENiRG/man/enirg.plot.Rd | 33 +- ENiRG-1.0/ENiRG/man/enirg.predict.Rd | 39 +-- ENiRG-1.0/ENiRG/man/import.egvs.Rd | 12 ENiRG-1.0/ENiRG/man/list.maps.Rd | 29 +- ENiRG-1.0/ENiRG/man/map.info.Rd | 20 - ENiRG-1.0/ENiRG/man/stdz.maps.Rd | 25 -- ENiRG-1.0/ENiRG/vignettes/figures/listmaps.png |binary ENiRG-1.0/ENiRG/vignettes/figures/vignette-010.pdf |binary ENiRG-1.0/ENiRG/vignettes/figures/vignette-011.pdf |binary ENiRG-1.0/ENiRG/vignettes/figures/vignette-015.pdf |only ENiRG-1.0/ENiRG/vignettes/vignette.rnw | 220 +++++++++++------- ENiRG-1.0/ENiRG/vignettes/vignette2.rnw | 13 - 57 files changed, 1465 insertions(+), 1231 deletions(-)
Title: Clustering for Business Analytics
Description: Implements clustering techniques such as Proximus and Rock, utility functions for efficient computation of cross distances and data manipulation.
Author: Christian Buchta and Michael Hahsler
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>
Diff between cba versions 0.2-15 dated 2015-07-23 and 0.2-16 dated 2016-05-05
CHANGELOG | 9 +++++++++ DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/proximus.r | 2 +- 4 files changed, 16 insertions(+), 7 deletions(-)
Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from
Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>
Diff between arulesSequences versions 0.2-14 dated 2016-03-26 and 0.2-15 dated 2016-05-05
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 4 ++-- 4 files changed, 13 insertions(+), 9 deletions(-)
More information about arulesSequences at CRAN
Permanent link
Title: Selection of Training Populations by Genetic Algorithm
Description: Can be utilized to select a test data calibrated training population in high dimensional prediction problems and assumes that the explanatory variables are observed for all of the individuals. Once a "good" training set is identified, the response variable can be obtained only for this set to build a model for predicting the response in the test set.
Author: Deniz Akdemir
Maintainer: Deniz Akdemir <deniz.akdemir.work@gmail.com>
Diff between STPGA versions 1.0 dated 2014-05-31 and 2.0 dated 2016-05-05
DESCRIPTION | 10 - MD5 | 42 ++++++- NAMESPACE | 2 R/AOPT.R |only R/CDMAX.R |only R/CDMAX0.R |only R/CDMAX2.R |only R/CDMEAN.R |only R/CDMEAN0.R |only R/CDMEAN2.R |only R/DOPT.R |only R/GenAlgForSubsetSelection.R | 99 +++++++++++++++++- R/GenAlgForSubsetSelectionNoTest.R |only R/PEVMAX.R |only R/PEVMAX0.R |only R/PEVMAX2.R |only R/PEVMEAN.R | 15 +- R/PEVMEAN0.R |only R/PEVMEAN2.R |only man/AOPT.Rd |only man/CDMAX.Rd |only man/CDMAX0.Rd |only man/CDMAX2.Rd |only man/CDMEAN.Rd |only man/CDMEAN0.Rd |only man/CDMEAN2.Rd |only man/DOPT.Rd |only man/GenAlgForSubsetSelection.Rd | 185 ++++++++++++++++++++++++++++++++-- man/GenAlgForSubsetSelectionNoTest.Rd |only man/PEVMAX.Rd |only man/PEVMAX0.Rd |only man/PEVMAX2.Rd |only man/PEVMEAN.Rd | 12 +- man/PEVMEAN0.Rd |only man/PEVMEAN2.Rd |only man/STPGA-package.Rd | 23 +--- 36 files changed, 338 insertions(+), 50 deletions(-)
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at http://www.ncdc.noaa.gov/cdo-web/webservices/v2, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut, cre],
Karthik Ram [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Hart Edmund [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 0.5.2 dated 2016-01-25 and 0.5.6 dated 2016-05-05
DESCRIPTION | 8 +-- MD5 | 86 ++++++++++++++++++------------------- NAMESPACE | 4 - NEWS.md | 28 ++++++++++++ R/argo.R | 13 +++-- R/buoy.R | 8 +-- R/coops.R | 2 R/gefs.R | 2 R/ghcnd.R | 18 ++++--- R/homr.R | 2 R/homr_definitions.R | 2 R/isd.R | 59 +++++++++++++++++-------- R/isd_stations.R | 28 +++++++++++- R/ncdc.r | 32 ++++++++++++- R/ncdc_datacats.r | 56 +++++++++++++++--------- R/ncdc_datasets.r | 45 +++++++++++++------ R/ncdc_datatypes.r | 70 ++++++++++++++++++++---------- R/ncdc_locs.r | 25 ++++++++-- R/ncdc_locs_cats.r | 10 +++- R/ncdc_plot.r | 18 +++---- R/ncdc_stations.r | 51 +++++++++++++++++++-- R/rnoaa-package.r | 30 ++++++------ R/zzz.r | 46 +++++++++++-------- README.md | 72 +++++++++++++++--------------- build/vignette.rds |binary inst/isd_stations.rds |binary man/buoy.Rd | 2 man/gefs.Rd | 2 man/isd_stations.Rd | 21 ++++++++- man/ncdc.Rd | 40 +++++++++++------ man/ncdc_datacats.Rd | 19 +++++--- man/ncdc_datasets.Rd | 31 +++++++------ man/ncdc_datatypes.Rd | 46 +++++++++++-------- man/ncdc_locs.Rd | 15 ++++-- man/ncdc_locs_cats.Rd | 8 ++- man/ncdc_plot.Rd | 14 ++---- man/ncdc_stations.Rd | 51 +++++++++++++++------ man/rnoaa-package.Rd | 14 +++--- tests/testthat/test-gefs.R | 5 +- tests/testthat/test-ghcnd.R | 42 +++++++++--------- tests/testthat/test-homr.R | 22 ++++----- tests/testthat/test-isd.R | 11 +++- tests/testthat/test-isd_stations.R | 28 ++++++------ tests/testthat/test-storms.R | 2 44 files changed, 703 insertions(+), 385 deletions(-)
Title: Conduct Univariate and Bivariate Wavelet Analyses
Description: This is a port of the WTC MATLAB package written by Aslak Grinsted
and the wavelet program written by Christopher Torrence and Gibert P.
Compo. This package can be used to perform univariate and bivariate
(cross-wavelet, wavelet coherence, wavelet clustering) analyses.
Author: Tarik C. Gouhier, Aslak Grinsted, Viliam Simko
Maintainer: Tarik C. Gouhier <tarik.gouhier@gmail.com>
Diff between biwavelet versions 0.19.1 dated 2016-05-01 and 0.19.2 dated 2016-05-05
DESCRIPTION | 8 MD5 | 40 +- R/RcppExports.R | 12 R/check.data.R | 42 +- R/wt.bases.R | 17 - README.md | 5 inst/NEWS.Rd | 40 ++ man/check.data.Rd | 2 src/Exception.h | 6 src/RcppExports.cpp | 12 src/array.h | 227 +------------ src/arrayGeneric.h | 506 ++++++++++-------------------- src/rcpp_wt_bases_dog.cpp | 2 src/rcpp_wt_bases_morlet.cpp | 20 - src/rcpp_wt_bases_paul.cpp | 19 - src/rowQuantileC.cpp | 12 tests/testthat/test-optimizations.R | 24 + vignettes/profiling.Rmd | 2 vignettes/webimg/README-wt_bias-1.png |binary vignettes/webimg/README-wtc_example-1.png |binary vignettes/webimg/README-xwt_example-1.png |binary 21 files changed, 368 insertions(+), 628 deletions(-)