Title: Pacific Decadal Oscillation Index Data
Description: Provides monthly Pacific Decadal Oscillation (PDO) index
values from January 1900 to March 2016.
Author: Joe Thorley [aut, cre],
Nathan Mantua [aut, dtc],
Steven R. Hare [aut, dtc]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between rpdo versions 0.1.2 dated 2016-04-02 and 0.2.0 dated 2016-05-06
rpdo-0.1.2/rpdo/R/release-questions.R |only rpdo-0.1.2/rpdo/build |only rpdo-0.1.2/rpdo/inst |only rpdo-0.1.2/rpdo/vignettes |only rpdo-0.2.0/rpdo/DESCRIPTION | 23 +++++++++++------------ rpdo-0.2.0/rpdo/MD5 | 25 ++++++++++++------------- rpdo-0.2.0/rpdo/NAMESPACE | 3 +++ rpdo-0.2.0/rpdo/NEWS.md | 6 ++++++ rpdo-0.2.0/rpdo/R/data.R | 4 +--- rpdo-0.2.0/rpdo/R/download-pdo.R |only rpdo-0.2.0/rpdo/R/package.R |only rpdo-0.2.0/rpdo/README.md | 25 +++++++++++++++++-------- rpdo-0.2.0/rpdo/data/pdo.rda |binary rpdo-0.2.0/rpdo/man/download_pdo.Rd |only rpdo-0.2.0/rpdo/man/pdo.Rd | 6 +----- rpdo-0.2.0/rpdo/man/rpdo.Rd |only rpdo-0.2.0/rpdo/tests/testthat/test-data.R | 3 +-- 17 files changed, 52 insertions(+), 43 deletions(-)
Title: Image Registration Using the NiftyReg Library
Description: Provides an R interface to the NiftyReg image registration tools
<http://sourceforge.net/projects/niftyreg/>. Linear and nonlinear registration
are supported, in two and three dimensions.
Author: Jon Clayden, based on original code by Marc Modat, Pankaj Daga and
others
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNiftyReg versions 2.2.0 dated 2016-03-03 and 2.3.0 dated 2016-05-06
DESCRIPTION | 12 +-- MD5 | 31 +++++---- NAMESPACE | 5 + NEWS | 16 +++++ R/image.R | 53 +++++++++++++--- R/niftyreg.R | 37 +++++++++++ R/transform.R | 18 ++--- man/composeTransforms.Rd | 15 ++-- man/isImage.Rd | 10 +-- man/pixdim.Rd | 21 +++++- man/similarity.Rd |only src/NiftiImage.cpp | 119 +++++++++++++++++++++++++++++++------- src/NiftiImage.h | 11 +++ src/main.cpp | 51 +++++++++++++++- src/reg-lib/_reg_aladin.cpp | 3 src/reg-lib/_reg_base.cpp | 4 + tests/testthat/test-20-niftyreg.R | 3 17 files changed, 331 insertions(+), 78 deletions(-)
Title: Client for the 'Pangaea' Database
Description: Tools to interact with the 'Pangaea' Database (<https://
www.pangaea.de>), including functions for searching for data, fetching 'datasets'
by 'dataset' 'ID', and working with the 'Pangaea' 'OAI-PMH' service.
Author: Scott Chamberlain [aut, cre],
Kara Woo [aut],
Andrew MacDonald [aut],
Naupaka Zimmerman [aut],
Gavin Simpson [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between pangaear versions 0.1.0 dated 2015-11-24 and 0.2.0 dated 2016-05-06
pangaear-0.1.0/pangaear/R/tbl_df.R |only pangaear-0.1.0/pangaear/man/type_sum.Rd |only pangaear-0.2.0/pangaear/DESCRIPTION | 15 - pangaear-0.2.0/pangaear/LICENSE | 2 pangaear-0.2.0/pangaear/MD5 | 29 +-- pangaear-0.2.0/pangaear/NAMESPACE | 27 -- pangaear-0.2.0/pangaear/NEWS.md |only pangaear-0.2.0/pangaear/R/caching.R |only pangaear-0.2.0/pangaear/R/pangaear-package.R | 6 pangaear-0.2.0/pangaear/R/pg_cache.R |only pangaear-0.2.0/pangaear/R/pg_data.R | 112 +++++------ pangaear-0.2.0/pangaear/R/pg_search.R | 61 +++--- pangaear-0.2.0/pangaear/R/zzz.R | 20 +- pangaear-0.2.0/pangaear/README.md | 261 +++++++++++++-------------- pangaear-0.2.0/pangaear/man/pg_data.Rd | 38 ++- pangaear-0.2.0/pangaear/man/pg_search.Rd | 4 pangaear-0.2.0/pangaear/tests |only 17 files changed, 289 insertions(+), 286 deletions(-)
Title: Access to the Neotoma Paleoecological Database Through R
Description: Access paleoecological datasets from the Neotoma Paleoecological
Database using the published API (http://api.neotomadb.org/). The functions
in this package access various pre-built API functions and attempt to return
the results from Neotoma in a usable format for researchers and the public.
Author: Simon J. Goring [aut, cre], Gavin L. Simpson [aut], Jeremiah P. Marsicek
[ctb], Karthik Ram [aut], Luke Sosalla [ctb]
Maintainer: Simon J. Goring <goring@wisc.edu>
Diff between neotoma versions 1.5.0 dated 2016-02-29 and 1.5.1 dated 2016-05-06
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 18 +++++++++--------- NEWS | 6 ++++++ R/compile_downloads.R | 25 ++++++++++++------------- R/get_dataset.R | 22 ++++++++++++++++++---- R/get_download.R | 11 ++++++++--- R/write_agefile.R | 2 ++ README.md | 9 +++++---- tests/testthat/test_neotoma.R | 1 + 10 files changed, 66 insertions(+), 38 deletions(-)
Title: Network Dynamic Temporal Visualizations
Description: Renders dynamic network data from 'networkDynamic' objects as movies, interactive animations, or other representations of changing relational structures and attributes.
Author: Skye Bender-deMoll [cre, aut],
Martina Morris [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between ndtv versions 0.9.0 dated 2016-02-23 and 0.10.0 dated 2016-05-06
ChangeLog | 17 +++ DESCRIPTION | 10 +- MD5 | 84 +++++++++---------- R/animate.interpolation.R | 2 R/animate.layouts.R | 2 R/export.dot.R | 2 R/export.matrix.R | 2 R/export.movie.R | 6 - R/export.pajek.net.R | 2 R/filmstrip.R | 6 + R/installers.R | 2 R/layout_centering.R | 2 R/ndtvAnimationWidget.R | 17 ++- R/proximity.timeline.R | 165 ++++++++++++++++++++++++++------------ R/render.d3_animation.R | 32 ++++--- R/specialEffects.R | 10 ++ R/tea_utils.R | 2 R/timecube.R | 9 ++ R/transmissionTimeline.R | 13 ++ R/zzz.R | 2 build/vignette.rds |binary inst/doc/ndtv.pdf |binary man/compute.animation.Rd | 2 man/effectFun.Rd | 9 ++ man/export.dot.Rd | 2 man/export.pajek.net.Rd | 2 man/filmstrip.Rd | 21 ++++ man/install.ffmpeg.Rd | 2 man/install.graphviz.Rd | 9 ++ man/layout.distance.Rd | 2 man/layout_centering.Rd | 9 ++ man/ndtv-package.Rd | 5 - man/ndtvAnimationWidget.Rd | 12 ++ man/network.layout.animate.Rd | 2 man/proximity.timeline.Rd | 21 +++- man/render.animation.Rd | 2 man/render.d3movie.Rd | 9 ++ man/timePrism.Rd | 9 ++ man/timeline.Rd | 2 man/toy_epi_sim.Rd | 9 ++ man/transmissionTimeline.Rd | 9 ++ tests/layout_tests.R | 2 tests/transmissionTimelineTests.R | 6 + 43 files changed, 384 insertions(+), 149 deletions(-)
Title: Download, Clean and Generate New Variables from GSOD Data
Description: Download, clean and reformat weather data from USA National
Climatic Data Center (NCDC) Global Surface Summary of the Day (GSOD) weather
stations,
<https://data.noaa.gov/dataset/global-surface-summary-of-the-day-gsod>.
The function, get_GSOD(), retrieves data from the GSOD ftp site and
reformats it from United States Customary System (USCS) units to metric
units, also for convenience elevation is converted from decimetres to
metres. Stations are individually checked for number of missing days, as
defined by the user, to assure data quality. Stations with too many missing
observations are omitted from final file. Also omitted are stations with a
latitude of < -90 or > 90 or longitude of < - 180 or > 180. Output is
returned as a comma-separated values (CSV) file written to disk in a
location selected by the user, which summarises each year by station and
includes new variables: actual and saturation vapor pressure and relative
humidity calculated from the original GSOD data. The resulting files can be
as large as 500mb depending on the user's stringency for missing data and
geographic area of interest. Be sure to have sufficient RAM and disk space
as well as a reasonably fast internet connection to use this package to
perform this operation. However, for much smaller and more manageable data
sets, an individual country of interest may be selected as well as only
stations falling between -60/60 degrees latitude for agroclimatology work.
The resulting files include station data (e.g., station name, country,
latitude, longitude, elevation) for use in a geographic information system
(GIS). The function was largely based on T. Hengl's 'getGSOD.R' script,
available from
<http://spatial-analyst.net/book/system/files/getGSOD.R> with enhancements
to be more cross-platform, faster and more flexible.
Author: Adam Sparks [aut, cre],
Tomislav Hengl [ctb],
Andy Nelson [ctb],
Kay Sumfleth [ctb]
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 0.1.1 dated 2016-04-20 and 0.1.3 dated 2016-05-06
DESCRIPTION | 13 ++++---- MD5 | 8 ++--- NEWS.md | 25 ++++++++++++++++ R/get_GSOD.R | 87 ++++++++++++++++++++++++++++++++++++----------------------- README.md | 20 ++++++++++--- 5 files changed, 104 insertions(+), 49 deletions(-)
Title: Spatial Generalised Linear Mixed Models for Areal Unit Data
Description: Implements a class of univariate and multivariate spatial generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (McMC) simulation. The response variable can be binomial, Gaussian or Poisson. Spatial autocorrelation is modelled by a set of random effects, which are assigned a conditional autoregressive (CAR) prior distribution. A number of different CAR priors are available for the random effects, including a multivariate CAR (MCAR) model for multivariate spatial data. Full details are given in the vignette accompanying this package. The initial creation of this package was supported by the Economic and Social Research Council (ESRC) grant RES-000-22-4256, and on-going development was supported by the Engineering and Physical Science Research Council (EPSRC) grant EP/J017442/1.
Author: Duncan Lee
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayes versions 4.4 dated 2016-02-03 and 4.5 dated 2016-05-06
CARBayes-4.4/CARBayes/inst/CITATION |only CARBayes-4.5/CARBayes/DESCRIPTION | 13 - CARBayes-4.5/CARBayes/MD5 | 57 +++---- CARBayes-4.5/CARBayes/NAMESPACE | 5 CARBayes-4.5/CARBayes/R/MVS.CARleroux.R |only CARBayes-4.5/CARBayes/R/RcppExports.R | 12 + CARBayes-4.5/CARBayes/R/binomial.MVlerouxCAR.R |only CARBayes-4.5/CARBayes/R/binomial.bymCAR.R | 8 - CARBayes-4.5/CARBayes/R/binomial.dissimilarityCAR.R | 6 CARBayes-4.5/CARBayes/R/binomial.lerouxCAR.R | 53 ++++-- CARBayes-4.5/CARBayes/R/binomial.localisedCAR.R | 6 CARBayes-4.5/CARBayes/R/gaussian.dissimilarityCAR.R | 8 - CARBayes-4.5/CARBayes/R/gaussian.lerouxCAR.R | 51 ++++-- CARBayes-4.5/CARBayes/R/poisson.MVlerouxCAR.R |only CARBayes-4.5/CARBayes/R/poisson.bymCAR.R | 8 - CARBayes-4.5/CARBayes/R/poisson.dissimilarityCAR.R | 6 CARBayes-4.5/CARBayes/R/poisson.lerouxCAR.R | 47 +++-- CARBayes-4.5/CARBayes/R/poisson.localisedCAR.R | 6 CARBayes-4.5/CARBayes/build/vignette.rds |binary CARBayes-4.5/CARBayes/inst/doc/CARBayesvignette.R | 40 ++--- CARBayes-4.5/CARBayes/inst/doc/CARBayesvignette.Rnw | 75 +++++++-- CARBayes-4.5/CARBayes/inst/doc/CARBayesvignette.pdf |binary CARBayes-4.5/CARBayes/man/CARBayes-package.Rd | 40 ++--- CARBayes-4.5/CARBayes/man/MVS.CARleroux.Rd |only CARBayes-4.5/CARBayes/man/S.CARbym.Rd | 6 CARBayes-4.5/CARBayes/man/S.CARdissimilarity.Rd | 6 CARBayes-4.5/CARBayes/man/S.CARleroux.Rd | 23 +- CARBayes-4.5/CARBayes/man/S.CARlocalised.Rd | 4 CARBayes-4.5/CARBayes/src/CARBayes.cpp | 152 ++++++++++++++++++- CARBayes-4.5/CARBayes/src/RcppExports.cpp | 51 ++++++ CARBayes-4.5/CARBayes/vignettes/CARBayesvignette.Rnw | 75 +++++++-- CARBayes-4.5/CARBayes/vignettes/jss996.bib | 12 + 32 files changed, 558 insertions(+), 212 deletions(-)
Title: Boost C++ Header Files
Description: Boost provides free peer-reviewed portable C++ source
libraries. A large part of Boost is provided as C++ template code
which is resolved entirely at compile-time without linking. This
package aims to provide the most useful subset of Boost libraries
for template use among CRAN package. By placing these libraries in
this package, we offer a more efficient distribution system for CRAN
as replication of this code in the sources of other packages is
avoided.
As of release 1.60.0-2, the following Boost libraries are included:
'algorithm' 'any' 'bimap' 'bind' 'circular_buffer' 'concept' 'config'
'container' 'date'_'time' 'detail' 'dynamic_bitset' 'exception'
'filesystem' 'flyweight' 'foreach' 'functional' 'fusion' 'geometry'
'graph' 'heap' 'icl' 'integer' 'interprocess' 'intrusive' 'io'
'iostreams' 'iterator' 'math' 'move' 'mpl' 'multiprcecision'
'numeric' 'pending' 'phoenix' 'preprocessor' 'random' 'range'
'smart_ptr' 'spirit' 'tuple' 'type_trains' 'typeof' 'unordered'
'utility' 'uuid'.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between BH versions 1.60.0-1 dated 2015-12-28 and 1.60.0-2 dated 2016-05-06
ChangeLog | 26 + DESCRIPTION | 26 - MD5 | 225 +++++++++- README.md | 24 - inst/NEWS.Rd | 11 inst/include/boost/bimap/container_adaptor/detail/key_extractor.hpp |only inst/include/boost/bimap/container_adaptor/detail/non_unique_container_helper.hpp |only inst/include/boost/bimap/container_adaptor/list_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/list_map_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/multimap_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/multiset_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/sequence_container_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/unordered_associative_container_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/unordered_map_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/unordered_multimap_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/unordered_multiset_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/unordered_set_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/vector_adaptor.hpp |only inst/include/boost/bimap/container_adaptor/vector_map_adaptor.hpp |only inst/include/boost/bimap/detail/non_unique_views_helper.hpp |only inst/include/boost/bimap/detail/test |only inst/include/boost/bimap/list_of.hpp |only inst/include/boost/bimap/multiset_of.hpp |only inst/include/boost/bimap/property_map |only inst/include/boost/bimap/support/lambda.hpp |only inst/include/boost/bimap/tags/support/apply_to_value_type.hpp |only inst/include/boost/bimap/tags/support/is_tagged.hpp |only inst/include/boost/bimap/tags/support/overwrite_tagged.hpp |only inst/include/boost/bimap/unordered_multiset_of.hpp |only inst/include/boost/bimap/unordered_set_of.hpp |only inst/include/boost/bimap/vector_of.hpp |only inst/include/boost/bimap/views/list_map_view.hpp |only inst/include/boost/bimap/views/list_set_view.hpp |only inst/include/boost/bimap/views/multimap_view.hpp |only inst/include/boost/bimap/views/multiset_view.hpp |only inst/include/boost/bimap/views/unordered_map_view.hpp |only inst/include/boost/bimap/views/unordered_multimap_view.hpp |only inst/include/boost/bimap/views/unordered_multiset_view.hpp |only inst/include/boost/bimap/views/unordered_set_view.hpp |only inst/include/boost/bimap/views/vector_map_view.hpp |only inst/include/boost/bimap/views/vector_set_view.hpp |only inst/include/boost/flyweight |only inst/include/boost/flyweight.hpp |only inst/include/boost/icl |only inst/include/boost/multi_index/composite_key.hpp |only inst/include/boost/multi_index/detail/cons_stdtuple.hpp |only inst/include/boost/multi_index/detail/rnd_index_loader.hpp |only inst/include/boost/multi_index/detail/rnd_index_node.hpp |only inst/include/boost/multi_index/detail/rnd_index_ops.hpp |only inst/include/boost/multi_index/detail/rnd_index_ptr_array.hpp |only inst/include/boost/multi_index/detail/rnd_node_iterator.hpp |only inst/include/boost/multi_index/global_fun.hpp |only inst/include/boost/multi_index/key_extractors.hpp |only inst/include/boost/multi_index/mem_fun.hpp |only inst/include/boost/multi_index/random_access_index.hpp |only inst/include/boost/multi_index/random_access_index_fwd.hpp |only inst/include/boost/xpressive/detail/core/matcher/action_matcher.hpp |only inst/include/boost/xpressive/detail/core/matcher/attr_begin_matcher.hpp |only inst/include/boost/xpressive/detail/core/matcher/predicate_matcher.hpp |only inst/include/boost/xpressive/detail/dynamic/dynamic.hpp |only inst/include/boost/xpressive/detail/dynamic/parse_charset.hpp |only inst/include/boost/xpressive/detail/dynamic/parser.hpp |only inst/include/boost/xpressive/detail/dynamic/parser_enum.hpp |only inst/include/boost/xpressive/detail/dynamic/parser_traits.hpp |only inst/include/boost/xpressive/regex_actions.hpp |only inst/include/boost/xpressive/regex_compiler.hpp |only inst/include/boost/xpressive/xpressive.hpp |only inst/include/boost/xpressive/xpressive_dynamic.hpp |only man/BH-package.Rd | 4 69 files changed, 294 insertions(+), 22 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 1.4 dated 2016-03-18 and 1.4-1 dated 2016-05-06
DESCRIPTION | 10 MD5 | 150 ++++---- NAMESPACE | 5 NEWS | 9 R/animation_tmap.R | 8 R/bb.R | 6 R/crop_shape.R |only R/end_of_the_world.R | 52 +- R/get_asp_ratio.R | 2 R/get_proj4_code.R | 2 R/get_raster_data.R | 81 ++++ R/gridplot.R | 34 + R/is_num_string.R |only R/legend_hist.R | 6 R/map_coloring.R | 2 R/meta_plot.R | 789 ++++++-------------------------------------- R/meta_plot_items.R |only R/num2pal.R | 16 R/onLoad.R | 4 R/pkg.R | 5 R/plot_all.R | 2 R/plot_map.R | 2 R/plot_misc_functions.R | 42 +- R/preprocess_gt.R | 3 R/preprocess_shapes.R | 149 +++++--- R/print_tmap.R | 52 ++ R/process_bubbles.R | 7 R/process_col_vector.R | 2 R/process_facet_layout.R | 109 ++++-- R/process_fill.R | 4 R/process_layers.R | 2 R/process_lines.R | 6 R/process_meta.R | 106 ++++- R/process_raster.R | 12 R/process_text.R | 12 R/process_tm.R | 20 - R/qtm.R | 11 R/read_GPX.R | 2 R/read_osm.R | 8 R/sample_dots.R | 4 R/save_tmap.R | 2 R/set_projection.R | 15 R/smooth_map.R | 6 R/text_functions.R |only R/tm_layers.R | 24 + R/tm_layout.R | 59 ++- R/tm_misc_elements.R | 34 + R/to_raster.R | 12 R/view_tmap.R | 5 build/vignette.rds |binary data/Europe.rda |binary inst/doc/tmap-modes.Rmd | 2 inst/doc/tmap-modes.html | 51 +- inst/doc/tmap-nutshell.R | 41 +- inst/doc/tmap-nutshell.Rmd | 50 +- inst/doc/tmap-nutshell.html | 129 +++---- man/Shapes.Rd | 4 man/animation_tmap.Rd | 13 man/approx_areas.Rd | 2 man/axis_labels.Rd |only man/bb.Rd | 7 man/calc_densities.Rd | 4 man/crop_shape.Rd |only man/polygons.Rd | 22 - man/qtm.Rd | 6 man/sample_dots.Rd | 61 --- man/save_tmap.Rd | 4 man/tm_compass.Rd | 2 man/tm_credits.Rd | 5 man/tm_facets.Rd | 8 man/tm_layout.Rd | 63 ++- man/tm_lines.Rd | 2 man/tm_raster.Rd | 5 man/tm_scale_bar.Rd | 4 man/tm_text.Rd | 18 - man/tmap-package.Rd | 2 man/tmap_mode.Rd | 3 vignettes/tmap-modes.Rmd | 2 vignettes/tmap-nutshell.Rmd | 50 +- 79 files changed, 1144 insertions(+), 1309 deletions(-)
Title: Semiparametric Copula Regression Models
Description: Routines for fitting copula models for binary and continuous responses with linear and nonlinear effects in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between SemiParBIVProbit versions 3.7 dated 2016-03-04 and 3.7-1 dated 2016-05-06
SemiParBIVProbit-3.7-1/SemiParBIVProbit/ChangeLog | 5 SemiParBIVProbit-3.7-1/SemiParBIVProbit/DESCRIPTION | 12 SemiParBIVProbit-3.7-1/SemiParBIVProbit/MD5 | 176 +- SemiParBIVProbit-3.7-1/SemiParBIVProbit/NAMESPACE | 26 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/AT.r | 15 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/AT2.r | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/Amat.R |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/H.tri.R |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/H.triSS.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/LM.bpm.r | 18 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/OR.r | 6 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/RR.r | 8 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/SemiParBIVProbit.fit.R | 53 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/SemiParBIVProbit.fit.post.r | 84 - SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/SemiParBIVProbit.r | 220 ++- SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/SemiParTRIVProbit.fit.post.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/SemiParTRIVProbit.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/adjCov.r | 41 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/adjCovSD.r | 37 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/bprobgHsCont3SS.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/bprobgHsContSS.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/bprobgHsContUniv.r | 48 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/bprobgHsContUniv3.r | 68 - SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/bprobgHsSS.r | 124 +- SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/copgHs.r | 69 - SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/copulaReg.fit.post.r | 39 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/copulaReg.r | 199 ++- SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/copulaSampleSel.fit.post.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/copulaSampleSel.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/distrHs.r | 508 +++++--- SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/distrHsAT.r | 19 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/eta.tr.R | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/g.tri.R |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/g.triSS.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/gt.bpm.R | 18 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/jc.probs.r | 606 ++++++++-- SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/mm.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/pen.r | 55 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/post.check.R | 25 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/prev.r | 126 +- SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.SemiParBIVProbit.r | 14 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.SemiParTRIVProbit.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.copulaReg.r | 53 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.copulaSampleSel.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.summary.SemiParBIVProbit.r | 24 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.summary.SemiParTRIVProbit.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.summary.copulaReg.r | 56 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.summary.copulaSampleSel.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/probm.R | 7 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/regH.r | 4 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/resp.check.R | 14 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/summary.SemiParBIVProbit.r | 27 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/summary.SemiParTRIVProbit.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/summary.copulaReg.r | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/summary.copulaSampleSel.r |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/triprobgHs.R |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/triprobgHsSS.R |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/data/hiv.RData |binary SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/AT.Rd | 7 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/Amat.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/H.tri.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/H.triSS.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/LM.bpm.Rd | 1 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/OR.Rd | 3 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/RR.Rd | 3 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParBIVProbit-package.Rd | 85 - SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParBIVProbit.Rd | 53 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParBIVProbitObject.Rd | 5 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParTRIVProbit.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParTRIVProbit.fit.post.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParTRIVProbitObject.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/VuongClarke.Rd | 7 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/bprobgHs.Rd | 10 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/bprobgHsCont3SS.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/bprobgHsContSS.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/bprobgHsSS.Rd | 13 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/conv.check.Rd | 3 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/copulaReg.Rd | 16 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/copulaSampleSel.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/copulaSampleSel.fit.post.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/copulaSampleSelObject.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/g.tri.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/g.triSS.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/hiv.Rd | 81 - SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/jc.probs.Rd | 25 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/mm.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/plot.SemiParBIVProbit.Rd | 11 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/polys.setup.Rd | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/post.check.Rd | 3 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/predict.SemiParBIVProbit.Rd | 25 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/prev.Rd | 11 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.AT.Rd | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.AT2.Rd | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.OR.Rd | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.RR.Rd | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.SemiParBIVProbit.Rd | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.SemiParTRIVProbit.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.copulaReg.Rd | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.copulaSampleSel.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.prev.Rd | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/resp.check.Rd | 2 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/summary.SemiParBIVProbit.Rd | 13 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/summary.SemiParTRIVProbit.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/summary.copulaReg.Rd | 21 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/summary.copulaSampleSel.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/triprobgHs.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/triprobgHsSS.Rd |only SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/war.Rd | 3 SemiParBIVProbit-3.7/SemiParBIVProbit/man/print.summary.SemiParBIVProbit.Rd |only SemiParBIVProbit-3.7/SemiParBIVProbit/man/print.summary.copulaReg.Rd |only 110 files changed, 2224 insertions(+), 1003 deletions(-)
More information about SemiParBIVProbit at CRAN
Permanent link
Title: Recurrent Neural Network
Description: Implementation of a Recurrent Neural Network in R.
Author: Bastiaan Quast [aut, cre]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between rnn versions 0.3.0 dated 2016-04-07 and 0.5.0 dated 2016-05-06
rnn-0.3.0/rnn/R/int2binary.R |only rnn-0.3.0/rnn/R/sigmoid.R |only rnn-0.3.0/rnn/man/int2binary.Rd |only rnn-0.3.0/rnn/man/sigmoid.Rd |only rnn-0.3.0/rnn/man/sigmoid_output_to_derivative.Rd |only rnn-0.5.0/rnn/DESCRIPTION | 7 rnn-0.5.0/rnn/MD5 | 42 rnn-0.5.0/rnn/NAMESPACE | 12 rnn-0.5.0/rnn/NEWS | 20 rnn-0.5.0/rnn/R/bin2int.R |only rnn-0.5.0/rnn/R/int2bin.R |only rnn-0.5.0/rnn/R/predictr.R |only rnn-0.5.0/rnn/R/rnn.R | 158 -- rnn-0.5.0/rnn/R/trainr.R |only rnn-0.5.0/rnn/README.md | 11 rnn-0.5.0/rnn/build/vignette.rds |binary rnn-0.5.0/rnn/inst/CITATION |only rnn-0.5.0/rnn/inst/doc/rnn.R | 87 - rnn-0.5.0/rnn/inst/doc/rnn.Rmd | 110 - rnn-0.5.0/rnn/inst/doc/rnn.html | 1700 +--------------------- rnn-0.5.0/rnn/inst/doc/sinus.R |only rnn-0.5.0/rnn/inst/doc/sinus.Rmd |only rnn-0.5.0/rnn/inst/doc/sinus.html |only rnn-0.5.0/rnn/man/bin2int.Rd |only rnn-0.5.0/rnn/man/int2bin.Rd |only rnn-0.5.0/rnn/man/predictr.Rd |only rnn-0.5.0/rnn/man/rnn.Rd | 50 rnn-0.5.0/rnn/man/trainr.Rd |only rnn-0.5.0/rnn/tests/testthat/test_rnn.R | 45 rnn-0.5.0/rnn/vignettes/rnn.Rmd | 110 - rnn-0.5.0/rnn/vignettes/sinus.Rmd |only 31 files changed, 383 insertions(+), 1969 deletions(-)
Title: Regularization in Cox Frailty Models
Description: A regularization approach for Cox Frailty Models by penalization methods is provided.
Author: Andreas Groll
Maintainer: Andreas Groll <groll@mathematik.uni-muenchen.de>
Diff between PenCoxFrail versions 1.0.0 dated 2016-03-14 and 1.0.1 dated 2016-05-06
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- man/pencoxfrail.rd | 4 ++-- src/IntegrMulti.cpp | 1 - 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Zoo of Geometric Objects
Description: Geometric objects defined in 'geozoo' can be simulated or displayed in the R package 'tourr'.
Author: Barret Schloerke [aut, cre],
Di Cook [ths],
Hadley Wickham [ths]
Maintainer: Barret Schloerke <schloerke@gmail.com>
Diff between geozoo versions 0.5.0 dated 2016-01-13 and 0.5.1 dated 2016-05-06
DESCRIPTION | 10 +++++----- MD5 | 12 +++++++----- NAMESPACE | 2 ++ NEWS | 11 +++++++++++ R/simplex.R | 29 ++++++++++++++++++++++++++--- README.md | 3 ++- man/f_composition.Rd |only man/f_helmert.Rd |only 8 files changed, 53 insertions(+), 14 deletions(-)
Title: Variable Selection for Supervised Classification in High
Dimension
Description: The functions provided in the FADA (Factor Adjusted Discriminant Analysis) package aim at performing supervised classification of high-dimensional and correlated profiles. The procedure combines a decorrelation step based on a
factor modeling of the dependence among covariates and a classification method. The available methods are Lasso regularized logistic model
(see Friedman et al. (2010)), sparse linear discriminant analysis (see
Clemmensen et al. (2011)), shrinkage linear and diagonal discriminant
analysis (see M. Ahdesmaki et al. (2010)). More methods of classification can be used on the decorrelated data provided by the package FADA.
Author: Emeline Perthame (INRIA, Grenoble, France), Chloe Friguet
(Universite de Bretagne Sud, Vannes, France) and David Causeur (Agrocampus
Ouest, Rennes, France)
Maintainer: David Causeur <david.causeur@agrocampus-ouest.fr>
Diff between FADA versions 1.2 dated 2014-10-14 and 1.3.1 dated 2016-05-06
DESCRIPTION | 19 +- MD5 | 19 +- NAMESPACE | 8 R/FADA.R | 109 +------------ R/decorrelate.test.R | 59 ++++--- R/decorrelate.train.R | 378 ++++++++++------------------------------------- R/func.R |only man/FADA-package.Rd | 2 man/FADA.Rd | 28 --- man/decorrelate.test.Rd | 2 man/decorrelate.train.Rd | 31 +-- 11 files changed, 177 insertions(+), 478 deletions(-)
Title: Structural Equation Modelling in R with 'OpenMx'
Description: Create, run, and report structural equation and twin models quickly.
If you're just starting out, try typing '?umx'.
Author: Timothy C Bates [aut, cre]
Maintainer: Timothy C Bates <timothy.c.bates@gmail.com>
Diff between umx versions 1.2.5 dated 2016-04-03 and 1.2.7 dated 2016-05-06
umx-1.2.5/umx/man/figures/mike_vcu_mx.jpg |only umx-1.2.5/umx/man/summaryAPA.Rd |only umx-1.2.5/umx/man/umx_cont_2_ordinal.Rd |only umx-1.2.5/umx/man/umx_fake_data.Rd |only umx-1.2.7/umx/DESCRIPTION | 10 umx-1.2.7/umx/MD5 | 117 ++-- umx-1.2.7/umx/NAMESPACE | 11 umx-1.2.7/umx/NEWS | 161 ++--- umx-1.2.7/umx/R/build_run_modify.r | 35 - umx-1.2.7/umx/R/fit_and_reporting.r | 123 ++-- umx-1.2.7/umx/R/misc_and_utility.r | 638 ++++++++++++++--------- umx-1.2.7/umx/R/model_builders.r | 121 +++- umx-1.2.7/umx/R/xmu.r | 3 umx-1.2.7/umx/README.md | 17 umx-1.2.7/umx/inst/CITATION | 10 umx-1.2.7/umx/man/getOpenMx.Rd | 4 umx-1.2.7/umx/man/loadings.MxModel.Rd | 6 umx-1.2.7/umx/man/loadings.Rd | 8 umx-1.2.7/umx/man/plot.MxModel.Rd | 19 umx-1.2.7/umx/man/umx.Rd | 11 umx-1.2.7/umx/man/umxAPA.Rd |only umx-1.2.7/umx/man/umxCI.Rd | 9 umx-1.2.7/umx/man/umxCP.Rd | 9 umx-1.2.7/umx/man/umxCovData.Rd | 7 umx-1.2.7/umx/man/umxEFA.Rd | 15 umx-1.2.7/umx/man/umxFactor.Rd | 20 umx-1.2.7/umx/man/umxHetCor.Rd | 7 umx-1.2.7/umx/man/umxIP.Rd | 4 umx-1.2.7/umx/man/umxJiggle.Rd | 3 umx-1.2.7/umx/man/umxPadAndPruneForDefVars.Rd | 7 umx-1.2.7/umx/man/umxTwoStage.Rd |only umx-1.2.7/umx/man/umx_APA_pval.Rd | 2 umx-1.2.7/umx/man/umx_aggregate.Rd | 2 umx-1.2.7/umx/man/umx_as_numeric.Rd | 7 umx-1.2.7/umx/man/umx_cont_2_quantiles.Rd |only umx-1.2.7/umx/man/umx_cov2raw.Rd | 7 umx-1.2.7/umx/man/umx_default_option.Rd | 1 umx-1.2.7/umx/man/umx_get_checkpoint.Rd | 1 umx-1.2.7/umx/man/umx_get_cores.Rd | 1 umx-1.2.7/umx/man/umx_get_optimizer.Rd | 1 umx-1.2.7/umx/man/umx_lower2full.Rd | 6 umx-1.2.7/umx/man/umx_make.Rd |only umx-1.2.7/umx/man/umx_make_MR_data.Rd |only umx-1.2.7/umx/man/umx_make_bin_cont_pair_data.Rd | 7 umx-1.2.7/umx/man/umx_make_fake_data.Rd |only umx-1.2.7/umx/man/umx_merge_CIs.Rd | 7 umx-1.2.7/umx/man/umx_pb_note.Rd | 2 umx-1.2.7/umx/man/umx_print.Rd | 2 umx-1.2.7/umx/man/umx_read_lower.Rd | 7 umx-1.2.7/umx/man/umx_reorder.Rd | 7 umx-1.2.7/umx/man/umx_residualize.Rd | 17 umx-1.2.7/umx/man/umx_round.Rd | 7 umx-1.2.7/umx/man/umx_scale.Rd | 7 umx-1.2.7/umx/man/umx_scale_wide_twin_data.Rd | 19 umx-1.2.7/umx/man/umx_set_auto_plot.Rd | 1 umx-1.2.7/umx/man/umx_set_auto_run.Rd | 1 umx-1.2.7/umx/man/umx_set_checkpoint.Rd | 1 umx-1.2.7/umx/man/umx_set_condensed_slots.Rd |only umx-1.2.7/umx/man/umx_set_cores.Rd | 1 umx-1.2.7/umx/man/umx_set_optimizer.Rd | 1 umx-1.2.7/umx/man/umx_set_plot_format.Rd | 1 umx-1.2.7/umx/man/umx_set_table_format.Rd | 1 umx-1.2.7/umx/man/umx_show.Rd | 2 umx-1.2.7/umx/man/umx_swap_a_block.Rd | 7 umx-1.2.7/umx/man/umx_time.Rd | 4 65 files changed, 934 insertions(+), 571 deletions(-)