Fri, 06 May 2016

New package tcpl with initial version 1.2
Package: tcpl
Title: ToxCast Data Analysis Pipeline
Version: 1.2
Authors@R: c(person("Dayne L", "Filer", role = c("aut", "cre"), email = "dayne.filer@gmail.com"), person("Parth", "Kothiya", role = "ctb"), person("Woodrow R", "Setzer", role = "ctb"), person("Richard S", "Judson", role = "ths"), person("Matthew T", "Martin", role = c("ctb", "ths"), email = "martin.matthew@epa.gov"))
Description: A set of tools for processing and modeling high-throughput and high-content chemical screening data. The package was developed for the the chemical screening data generated by the US EPA ToxCast program, but can be used for diverse chemical screening efforts.
URL: http://www.epa.gov/ncct/toxcast/
Depends: R (>= 3.2.0), data.table (>= 1.9.4)
Imports: DBI, RMySQL, RSQLite, numDeriv, RColorBrewer, utils, stats, methods, graphics, grDevices
Suggests: roxygen2
License: GPL-2
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-06 23:39:43 UTC; DFiler
Author: Dayne L Filer [aut, cre], Parth Kothiya [ctb], Woodrow R Setzer [ctb], Richard S Judson [ths], Matthew T Martin [ctb, ths]
Maintainer: Dayne L Filer <dayne.filer@gmail.com>
Repository: CRAN
Date/Publication: 2016-05-07 02:07:07

More information about tcpl at CRAN
Permanent link

Package rpdo updated to version 0.2.0 with previous version 0.1.2 dated 2016-04-02

Title: Pacific Decadal Oscillation Index Data
Description: Provides monthly Pacific Decadal Oscillation (PDO) index values from January 1900 to March 2016.
Author: Joe Thorley [aut, cre], Nathan Mantua [aut, dtc], Steven R. Hare [aut, dtc]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>

Diff between rpdo versions 0.1.2 dated 2016-04-02 and 0.2.0 dated 2016-05-06

 rpdo-0.1.2/rpdo/R/release-questions.R      |only
 rpdo-0.1.2/rpdo/build                      |only
 rpdo-0.1.2/rpdo/inst                       |only
 rpdo-0.1.2/rpdo/vignettes                  |only
 rpdo-0.2.0/rpdo/DESCRIPTION                |   23 +++++++++++------------
 rpdo-0.2.0/rpdo/MD5                        |   25 ++++++++++++-------------
 rpdo-0.2.0/rpdo/NAMESPACE                  |    3 +++
 rpdo-0.2.0/rpdo/NEWS.md                    |    6 ++++++
 rpdo-0.2.0/rpdo/R/data.R                   |    4 +---
 rpdo-0.2.0/rpdo/R/download-pdo.R           |only
 rpdo-0.2.0/rpdo/R/package.R                |only
 rpdo-0.2.0/rpdo/README.md                  |   25 +++++++++++++++++--------
 rpdo-0.2.0/rpdo/data/pdo.rda               |binary
 rpdo-0.2.0/rpdo/man/download_pdo.Rd        |only
 rpdo-0.2.0/rpdo/man/pdo.Rd                 |    6 +-----
 rpdo-0.2.0/rpdo/man/rpdo.Rd                |only
 rpdo-0.2.0/rpdo/tests/testthat/test-data.R |    3 +--
 17 files changed, 52 insertions(+), 43 deletions(-)

More information about rpdo at CRAN
Permanent link

Package RNiftyReg updated to version 2.3.0 with previous version 2.2.0 dated 2016-03-03

Title: Image Registration Using the NiftyReg Library
Description: Provides an R interface to the NiftyReg image registration tools <http://sourceforge.net/projects/niftyreg/>. Linear and nonlinear registration are supported, in two and three dimensions.
Author: Jon Clayden, based on original code by Marc Modat, Pankaj Daga and others
Maintainer: Jon Clayden <code@clayden.org>

Diff between RNiftyReg versions 2.2.0 dated 2016-03-03 and 2.3.0 dated 2016-05-06

 DESCRIPTION                       |   12 +--
 MD5                               |   31 +++++----
 NAMESPACE                         |    5 +
 NEWS                              |   16 +++++
 R/image.R                         |   53 +++++++++++++---
 R/niftyreg.R                      |   37 +++++++++++
 R/transform.R                     |   18 ++---
 man/composeTransforms.Rd          |   15 ++--
 man/isImage.Rd                    |   10 +--
 man/pixdim.Rd                     |   21 +++++-
 man/similarity.Rd                 |only
 src/NiftiImage.cpp                |  119 +++++++++++++++++++++++++++++++-------
 src/NiftiImage.h                  |   11 +++
 src/main.cpp                      |   51 +++++++++++++++-
 src/reg-lib/_reg_aladin.cpp       |    3 
 src/reg-lib/_reg_base.cpp         |    4 +
 tests/testthat/test-20-niftyreg.R |    3 
 17 files changed, 331 insertions(+), 78 deletions(-)

More information about RNiftyReg at CRAN
Permanent link

New package repr with initial version 0.6
Package: repr
Title: Serializable Representations
Version: 0.6
Authors@R: c( person('Philipp', 'A.', email = 'flying-sheep@web.de', role = c('aut', 'cre')), person('Thomas', 'Kluyver', email = 'thomas@kluyver.me.uk', role = 'aut'), person('Jan', 'Schulz', email = 'jasc@gmx.net', role = 'aut'), person('abielr', role = 'ctb'), person('Denilson', 'Figueiredo de Sa', role = 'ctb'), person('Jim', 'Hester', role = 'ctb'), person('karldw', role = 'ctb') )
Maintainer: Philipp A. <flying-sheep@web.de>
Description: String and binary representations of objects for several formats / mime types.
Depends: R (>= 3.0.1)
Imports: utils, grDevices
Suggests: highr, Cairo, testthat
Enhances: data.table, dplyr, htmlwidgets
License: GPL-3
LazyData: true
Encoding: UTF-8
Collate: 'generics.r' 'options.r' 'package.r' 'utils.r' 'repr_function.r' 'repr_help_files_with_topic.r' 'repr_htmlwidget.r' 'repr_list.r' 'repr_matrix_df.r' 'repr_recordedplot.r' 'repr_vector.r'
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-27 18:44:49 UTC; phil
Author: Philipp A. [aut, cre], Thomas Kluyver [aut], Jan Schulz [aut], abielr [ctb], Denilson Figueiredo de Sa [ctb], Jim Hester [ctb], karldw [ctb]
Repository: CRAN
Date/Publication: 2016-05-07 01:22:09

More information about repr at CRAN
Permanent link

New package pxweb with initial version 0.6.3
Package: pxweb
Type: Package
Title: R Interface to the PX-Web/PC-Axis API
Version: 0.6.3
Date: 2016-05-06
Author: Mans Magnusson, Leo Lahti, Love Hansson
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Description: Generic interface for the PX-Web/PC-Axis API. The PX-Web/PC-Axis API is used by organizations such as Statistics Sweden and Statistics Finland to disseminate data. The R package can interact with all PX-Web/PC-Axis APIs to fetch information about the data hierarchy, extract metadata and extract and parse statistics to R data.frame format. PX-Web is a solution to disseminate PC-Axis data files in dynamic tables on the web. Since 2013 PX-Web contains an API to disseminate PC-Axis files.
VignetteBuilder: knitr
URL: https://github.com/rOpenGov/pxweb/
BugReports: https://github.com/rOpenGov/pxweb/issues
Depends: methods
Imports: data.table, plyr, stringr, RJSONIO, httr (>= 1.1)
License: BSD_2_clause + file LICENSE
Suggests: testthat (>= 0.11), ggplot2, knitr, rmarkdown
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-06 14:30:05 UTC; manma97
Repository: CRAN
Date/Publication: 2016-05-07 01:17:54

More information about pxweb at CRAN
Permanent link

Package pangaear updated to version 0.2.0 with previous version 0.1.0 dated 2015-11-24

Title: Client for the 'Pangaea' Database
Description: Tools to interact with the 'Pangaea' Database (<https:// www.pangaea.de>), including functions for searching for data, fetching 'datasets' by 'dataset' 'ID', and working with the 'Pangaea' 'OAI-PMH' service.
Author: Scott Chamberlain [aut, cre], Kara Woo [aut], Andrew MacDonald [aut], Naupaka Zimmerman [aut], Gavin Simpson [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between pangaear versions 0.1.0 dated 2015-11-24 and 0.2.0 dated 2016-05-06

 pangaear-0.1.0/pangaear/R/tbl_df.R           |only
 pangaear-0.1.0/pangaear/man/type_sum.Rd      |only
 pangaear-0.2.0/pangaear/DESCRIPTION          |   15 -
 pangaear-0.2.0/pangaear/LICENSE              |    2 
 pangaear-0.2.0/pangaear/MD5                  |   29 +--
 pangaear-0.2.0/pangaear/NAMESPACE            |   27 --
 pangaear-0.2.0/pangaear/NEWS.md              |only
 pangaear-0.2.0/pangaear/R/caching.R          |only
 pangaear-0.2.0/pangaear/R/pangaear-package.R |    6 
 pangaear-0.2.0/pangaear/R/pg_cache.R         |only
 pangaear-0.2.0/pangaear/R/pg_data.R          |  112 +++++------
 pangaear-0.2.0/pangaear/R/pg_search.R        |   61 +++---
 pangaear-0.2.0/pangaear/R/zzz.R              |   20 +-
 pangaear-0.2.0/pangaear/README.md            |  261 +++++++++++++--------------
 pangaear-0.2.0/pangaear/man/pg_data.Rd       |   38 ++-
 pangaear-0.2.0/pangaear/man/pg_search.Rd     |    4 
 pangaear-0.2.0/pangaear/tests                |only
 17 files changed, 289 insertions(+), 286 deletions(-)

More information about pangaear at CRAN
Permanent link

Package neotoma updated to version 1.5.1 with previous version 1.5.0 dated 2016-02-29

Title: Access to the Neotoma Paleoecological Database Through R
Description: Access paleoecological datasets from the Neotoma Paleoecological Database using the published API (http://api.neotomadb.org/). The functions in this package access various pre-built API functions and attempt to return the results from Neotoma in a usable format for researchers and the public.
Author: Simon J. Goring [aut, cre], Gavin L. Simpson [aut], Jeremiah P. Marsicek [ctb], Karthik Ram [aut], Luke Sosalla [ctb]
Maintainer: Simon J. Goring <goring@wisc.edu>

Diff between neotoma versions 1.5.0 dated 2016-02-29 and 1.5.1 dated 2016-05-06

 DESCRIPTION                   |    8 ++++----
 LICENSE                       |    2 +-
 MD5                           |   18 +++++++++---------
 NEWS                          |    6 ++++++
 R/compile_downloads.R         |   25 ++++++++++++-------------
 R/get_dataset.R               |   22 ++++++++++++++++++----
 R/get_download.R              |   11 ++++++++---
 R/write_agefile.R             |    2 ++
 README.md                     |    9 +++++----
 tests/testthat/test_neotoma.R |    1 +
 10 files changed, 66 insertions(+), 38 deletions(-)

More information about neotoma at CRAN
Permanent link

New package netdiffuseR with initial version 1.16.5
Package: netdiffuseR
Title: Network Analysis for Diffusion of Innovations
Version: 1.16.5
Date: 2016-05-02
Authors@R: c( person("George", "Vega Yon", email="g.vegayon@gmail.com", role=c("aut", "cre"), comment="Rewrite functions with Rcpp, plus new features"), person("Stephanie", "Dyal", email="stepharp@usc.edu", role=c("aut"), comment="Package's first version"), person("Timothy", "Hayes", email="timothybhayes@gmail.com", role=c("aut"), comment="Package's first version"), person("Thomas", "Valente", email="tvalente@usc.edu", role=c("aut", "cph"), comment="R original code"))
Description: Empirical statistical analysis, visualization and simulation of network models of the diffusion of innovations. The package implements algorithms for calculating network diffusion statistics such as transmission rate, hazard rates, exposure models, network threshold levels, infectiousness (contagion), and susceptibility. The package is inspired by work published in Valente, et al., (2015) <DOI:10.1016/j.socscimed.2015.10.001>; Valente (1995) <ISBN:9781881303213>, Myers (2000) <DOI:10.1086/303110>, Iyengar and others (2011) <DOI:10.1287/mksc.1100.0566>, Burt (1987) <DOI:10.1086/228667>; among others.
Depends: R (>= 3.1.1)
License: MIT + file LICENSE
LazyData: true
Imports: Rcpp (>= 0.12.1), sna, Matrix, SparseM, methods, grDevices, graphics, stats, utils, boot, igraph
Suggests: covr, testthat, knitr, ape, RSiena, survival
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 5.0.1
Encoding: UTF-8
URL: https://github.com/USCCANA/netdiffuseR
BugReports: https://github.com/USCCANA/netdiffuseR/issues
Classification/MSC: 90C35, 90B18, 91D30
Collate: 'RcppExports.R' 'imports.R' 'graph_data.R' 'adjmat.R' 'data.R' 'diffnet-c.R' 'diffnet-class.R' 'diffnet-indexing.R' 'diffnet-methods.R' 'egonets.R' 'igraph.R' 'infect_suscept.R' 'misc.R' 'moran.R' 'options.R' 'package-doc.R' 'rewire.R' 'random_graph.R' 'rdiffnet.R' 'read_write_foreign.R' 'select_egoalter.R' 'stats.R' 'struct_equiv.R' 'struct_test.R' 'survey_to_diffnet.R'
NeedsCompilation: yes
Packaged: 2016-05-06 16:17:59 UTC; george
Author: George Vega Yon [aut, cre] (Rewrite functions with Rcpp, plus new features), Stephanie Dyal [aut] (Package's first version), Timothy Hayes [aut] (Package's first version), Thomas Valente [aut, cph] (R original code)
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Repository: CRAN
Date/Publication: 2016-05-07 01:50:53

More information about netdiffuseR at CRAN
Permanent link

Package ndtv updated to version 0.10.0 with previous version 0.9.0 dated 2016-02-23

Title: Network Dynamic Temporal Visualizations
Description: Renders dynamic network data from 'networkDynamic' objects as movies, interactive animations, or other representations of changing relational structures and attributes.
Author: Skye Bender-deMoll [cre, aut], Martina Morris [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>

Diff between ndtv versions 0.9.0 dated 2016-02-23 and 0.10.0 dated 2016-05-06

 ChangeLog                         |   17 +++
 DESCRIPTION                       |   10 +-
 MD5                               |   84 +++++++++----------
 R/animate.interpolation.R         |    2 
 R/animate.layouts.R               |    2 
 R/export.dot.R                    |    2 
 R/export.matrix.R                 |    2 
 R/export.movie.R                  |    6 -
 R/export.pajek.net.R              |    2 
 R/filmstrip.R                     |    6 +
 R/installers.R                    |    2 
 R/layout_centering.R              |    2 
 R/ndtvAnimationWidget.R           |   17 ++-
 R/proximity.timeline.R            |  165 ++++++++++++++++++++++++++------------
 R/render.d3_animation.R           |   32 ++++---
 R/specialEffects.R                |   10 ++
 R/tea_utils.R                     |    2 
 R/timecube.R                      |    9 ++
 R/transmissionTimeline.R          |   13 ++
 R/zzz.R                           |    2 
 build/vignette.rds                |binary
 inst/doc/ndtv.pdf                 |binary
 man/compute.animation.Rd          |    2 
 man/effectFun.Rd                  |    9 ++
 man/export.dot.Rd                 |    2 
 man/export.pajek.net.Rd           |    2 
 man/filmstrip.Rd                  |   21 ++++
 man/install.ffmpeg.Rd             |    2 
 man/install.graphviz.Rd           |    9 ++
 man/layout.distance.Rd            |    2 
 man/layout_centering.Rd           |    9 ++
 man/ndtv-package.Rd               |    5 -
 man/ndtvAnimationWidget.Rd        |   12 ++
 man/network.layout.animate.Rd     |    2 
 man/proximity.timeline.Rd         |   21 +++-
 man/render.animation.Rd           |    2 
 man/render.d3movie.Rd             |    9 ++
 man/timePrism.Rd                  |    9 ++
 man/timeline.Rd                   |    2 
 man/toy_epi_sim.Rd                |    9 ++
 man/transmissionTimeline.Rd       |    9 ++
 tests/layout_tests.R              |    2 
 tests/transmissionTimelineTests.R |    6 +
 43 files changed, 384 insertions(+), 149 deletions(-)

More information about ndtv at CRAN
Permanent link

New package LogicOpt with initial version 1.0.0
Package: LogicOpt
Type: Package
Title: Truth Table Logic Optimizer
Date: 2016-05-06
Description: Access to powerful logic minimization algorithms and data structures that operate on a sum-of-products truth table. The core algorithms are built on Espresso Version 2.3 developed at UC Berkeley for digital logic synthesis purposes. Enhancements have been made to integrate within the R framework and support additional logic optimization use cases such as those needed by Qualitative Comparative Analysis (QCA) and Genetic Programming. There are no expressed or implied warranties.
Version: 1.0.0
Authors@R: person("William", "Stiehl", email = "wwstiehl@gmail.com", role = c("aut", "cre", "cph"))
Author: William Stiehl [aut, cre, cph]
Maintainer: William Stiehl <wwstiehl@gmail.com>
Depends: R (>= 3.2.3)
License: GPL (>= 2)
NeedsCompilation: yes
LazyData: true
RoxygenNote: 5.0.1
Suggests: testthat
Packaged: 2016-05-06 14:49:58 UTC; stiehlmacpro
Repository: CRAN
Date/Publication: 2016-05-07 01:27:50

More information about LogicOpt at CRAN
Permanent link

Package GSODR updated to version 0.1.3 with previous version 0.1.1 dated 2016-04-20

Title: Download, Clean and Generate New Variables from GSOD Data
Description: Download, clean and reformat weather data from USA National Climatic Data Center (NCDC) Global Surface Summary of the Day (GSOD) weather stations, <https://data.noaa.gov/dataset/global-surface-summary-of-the-day-gsod>. The function, get_GSOD(), retrieves data from the GSOD ftp site and reformats it from United States Customary System (USCS) units to metric units, also for convenience elevation is converted from decimetres to metres. Stations are individually checked for number of missing days, as defined by the user, to assure data quality. Stations with too many missing observations are omitted from final file. Also omitted are stations with a latitude of < -90 or > 90 or longitude of < - 180 or > 180. Output is returned as a comma-separated values (CSV) file written to disk in a location selected by the user, which summarises each year by station and includes new variables: actual and saturation vapor pressure and relative humidity calculated from the original GSOD data. The resulting files can be as large as 500mb depending on the user's stringency for missing data and geographic area of interest. Be sure to have sufficient RAM and disk space as well as a reasonably fast internet connection to use this package to perform this operation. However, for much smaller and more manageable data sets, an individual country of interest may be selected as well as only stations falling between -60/60 degrees latitude for agroclimatology work. The resulting files include station data (e.g., station name, country, latitude, longitude, elevation) for use in a geographic information system (GIS). The function was largely based on T. Hengl's 'getGSOD.R' script, available from <http://spatial-analyst.net/book/system/files/getGSOD.R> with enhancements to be more cross-platform, faster and more flexible.
Author: Adam Sparks [aut, cre], Tomislav Hengl [ctb], Andy Nelson [ctb], Kay Sumfleth [ctb]
Maintainer: Adam Sparks <adamhsparks@gmail.com>

Diff between GSODR versions 0.1.1 dated 2016-04-20 and 0.1.3 dated 2016-05-06

 DESCRIPTION  |   13 ++++----
 MD5          |    8 ++---
 NEWS.md      |   25 ++++++++++++++++
 R/get_GSOD.R |   87 ++++++++++++++++++++++++++++++++++++-----------------------
 README.md    |   20 ++++++++++---
 5 files changed, 104 insertions(+), 49 deletions(-)

More information about GSODR at CRAN
Permanent link

Package CARBayes updated to version 4.5 with previous version 4.4 dated 2016-02-03

Title: Spatial Generalised Linear Mixed Models for Areal Unit Data
Description: Implements a class of univariate and multivariate spatial generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (McMC) simulation. The response variable can be binomial, Gaussian or Poisson. Spatial autocorrelation is modelled by a set of random effects, which are assigned a conditional autoregressive (CAR) prior distribution. A number of different CAR priors are available for the random effects, including a multivariate CAR (MCAR) model for multivariate spatial data. Full details are given in the vignette accompanying this package. The initial creation of this package was supported by the Economic and Social Research Council (ESRC) grant RES-000-22-4256, and on-going development was supported by the Engineering and Physical Science Research Council (EPSRC) grant EP/J017442/1.
Author: Duncan Lee
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>

Diff between CARBayes versions 4.4 dated 2016-02-03 and 4.5 dated 2016-05-06

 CARBayes-4.4/CARBayes/inst/CITATION                  |only
 CARBayes-4.5/CARBayes/DESCRIPTION                    |   13 -
 CARBayes-4.5/CARBayes/MD5                            |   57 +++----
 CARBayes-4.5/CARBayes/NAMESPACE                      |    5 
 CARBayes-4.5/CARBayes/R/MVS.CARleroux.R              |only
 CARBayes-4.5/CARBayes/R/RcppExports.R                |   12 +
 CARBayes-4.5/CARBayes/R/binomial.MVlerouxCAR.R       |only
 CARBayes-4.5/CARBayes/R/binomial.bymCAR.R            |    8 -
 CARBayes-4.5/CARBayes/R/binomial.dissimilarityCAR.R  |    6 
 CARBayes-4.5/CARBayes/R/binomial.lerouxCAR.R         |   53 ++++--
 CARBayes-4.5/CARBayes/R/binomial.localisedCAR.R      |    6 
 CARBayes-4.5/CARBayes/R/gaussian.dissimilarityCAR.R  |    8 -
 CARBayes-4.5/CARBayes/R/gaussian.lerouxCAR.R         |   51 ++++--
 CARBayes-4.5/CARBayes/R/poisson.MVlerouxCAR.R        |only
 CARBayes-4.5/CARBayes/R/poisson.bymCAR.R             |    8 -
 CARBayes-4.5/CARBayes/R/poisson.dissimilarityCAR.R   |    6 
 CARBayes-4.5/CARBayes/R/poisson.lerouxCAR.R          |   47 +++--
 CARBayes-4.5/CARBayes/R/poisson.localisedCAR.R       |    6 
 CARBayes-4.5/CARBayes/build/vignette.rds             |binary
 CARBayes-4.5/CARBayes/inst/doc/CARBayesvignette.R    |   40 ++---
 CARBayes-4.5/CARBayes/inst/doc/CARBayesvignette.Rnw  |   75 +++++++--
 CARBayes-4.5/CARBayes/inst/doc/CARBayesvignette.pdf  |binary
 CARBayes-4.5/CARBayes/man/CARBayes-package.Rd        |   40 ++---
 CARBayes-4.5/CARBayes/man/MVS.CARleroux.Rd           |only
 CARBayes-4.5/CARBayes/man/S.CARbym.Rd                |    6 
 CARBayes-4.5/CARBayes/man/S.CARdissimilarity.Rd      |    6 
 CARBayes-4.5/CARBayes/man/S.CARleroux.Rd             |   23 +-
 CARBayes-4.5/CARBayes/man/S.CARlocalised.Rd          |    4 
 CARBayes-4.5/CARBayes/src/CARBayes.cpp               |  152 ++++++++++++++++++-
 CARBayes-4.5/CARBayes/src/RcppExports.cpp            |   51 ++++++
 CARBayes-4.5/CARBayes/vignettes/CARBayesvignette.Rnw |   75 +++++++--
 CARBayes-4.5/CARBayes/vignettes/jss996.bib           |   12 +
 32 files changed, 558 insertions(+), 212 deletions(-)

More information about CARBayes at CRAN
Permanent link

Package BH updated to version 1.60.0-2 with previous version 1.60.0-1 dated 2015-12-28

Title: Boost C++ Header Files
Description: Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided. As of release 1.60.0-2, the following Boost libraries are included: 'algorithm' 'any' 'bimap' 'bind' 'circular_buffer' 'concept' 'config' 'container' 'date'_'time' 'detail' 'dynamic_bitset' 'exception' 'filesystem' 'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap' 'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams' 'iterator' 'math' 'move' 'mpl' 'multiprcecision' 'numeric' 'pending' 'phoenix' 'preprocessor' 'random' 'range' 'smart_ptr' 'spirit' 'tuple' 'type_trains' 'typeof' 'unordered' 'utility' 'uuid'.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between BH versions 1.60.0-1 dated 2015-12-28 and 1.60.0-2 dated 2016-05-06

 ChangeLog                                                                              |   26 +
 DESCRIPTION                                                                            |   26 -
 MD5                                                                                    |  225 +++++++++-
 README.md                                                                              |   24 -
 inst/NEWS.Rd                                                                           |   11 
 inst/include/boost/bimap/container_adaptor/detail/key_extractor.hpp                    |only
 inst/include/boost/bimap/container_adaptor/detail/non_unique_container_helper.hpp      |only
 inst/include/boost/bimap/container_adaptor/list_adaptor.hpp                            |only
 inst/include/boost/bimap/container_adaptor/list_map_adaptor.hpp                        |only
 inst/include/boost/bimap/container_adaptor/multimap_adaptor.hpp                        |only
 inst/include/boost/bimap/container_adaptor/multiset_adaptor.hpp                        |only
 inst/include/boost/bimap/container_adaptor/sequence_container_adaptor.hpp              |only
 inst/include/boost/bimap/container_adaptor/unordered_associative_container_adaptor.hpp |only
 inst/include/boost/bimap/container_adaptor/unordered_map_adaptor.hpp                   |only
 inst/include/boost/bimap/container_adaptor/unordered_multimap_adaptor.hpp              |only
 inst/include/boost/bimap/container_adaptor/unordered_multiset_adaptor.hpp              |only
 inst/include/boost/bimap/container_adaptor/unordered_set_adaptor.hpp                   |only
 inst/include/boost/bimap/container_adaptor/vector_adaptor.hpp                          |only
 inst/include/boost/bimap/container_adaptor/vector_map_adaptor.hpp                      |only
 inst/include/boost/bimap/detail/non_unique_views_helper.hpp                            |only
 inst/include/boost/bimap/detail/test                                                   |only
 inst/include/boost/bimap/list_of.hpp                                                   |only
 inst/include/boost/bimap/multiset_of.hpp                                               |only
 inst/include/boost/bimap/property_map                                                  |only
 inst/include/boost/bimap/support/lambda.hpp                                            |only
 inst/include/boost/bimap/tags/support/apply_to_value_type.hpp                          |only
 inst/include/boost/bimap/tags/support/is_tagged.hpp                                    |only
 inst/include/boost/bimap/tags/support/overwrite_tagged.hpp                             |only
 inst/include/boost/bimap/unordered_multiset_of.hpp                                     |only
 inst/include/boost/bimap/unordered_set_of.hpp                                          |only
 inst/include/boost/bimap/vector_of.hpp                                                 |only
 inst/include/boost/bimap/views/list_map_view.hpp                                       |only
 inst/include/boost/bimap/views/list_set_view.hpp                                       |only
 inst/include/boost/bimap/views/multimap_view.hpp                                       |only
 inst/include/boost/bimap/views/multiset_view.hpp                                       |only
 inst/include/boost/bimap/views/unordered_map_view.hpp                                  |only
 inst/include/boost/bimap/views/unordered_multimap_view.hpp                             |only
 inst/include/boost/bimap/views/unordered_multiset_view.hpp                             |only
 inst/include/boost/bimap/views/unordered_set_view.hpp                                  |only
 inst/include/boost/bimap/views/vector_map_view.hpp                                     |only
 inst/include/boost/bimap/views/vector_set_view.hpp                                     |only
 inst/include/boost/flyweight                                                           |only
 inst/include/boost/flyweight.hpp                                                       |only
 inst/include/boost/icl                                                                 |only
 inst/include/boost/multi_index/composite_key.hpp                                       |only
 inst/include/boost/multi_index/detail/cons_stdtuple.hpp                                |only
 inst/include/boost/multi_index/detail/rnd_index_loader.hpp                             |only
 inst/include/boost/multi_index/detail/rnd_index_node.hpp                               |only
 inst/include/boost/multi_index/detail/rnd_index_ops.hpp                                |only
 inst/include/boost/multi_index/detail/rnd_index_ptr_array.hpp                          |only
 inst/include/boost/multi_index/detail/rnd_node_iterator.hpp                            |only
 inst/include/boost/multi_index/global_fun.hpp                                          |only
 inst/include/boost/multi_index/key_extractors.hpp                                      |only
 inst/include/boost/multi_index/mem_fun.hpp                                             |only
 inst/include/boost/multi_index/random_access_index.hpp                                 |only
 inst/include/boost/multi_index/random_access_index_fwd.hpp                             |only
 inst/include/boost/xpressive/detail/core/matcher/action_matcher.hpp                    |only
 inst/include/boost/xpressive/detail/core/matcher/attr_begin_matcher.hpp                |only
 inst/include/boost/xpressive/detail/core/matcher/predicate_matcher.hpp                 |only
 inst/include/boost/xpressive/detail/dynamic/dynamic.hpp                                |only
 inst/include/boost/xpressive/detail/dynamic/parse_charset.hpp                          |only
 inst/include/boost/xpressive/detail/dynamic/parser.hpp                                 |only
 inst/include/boost/xpressive/detail/dynamic/parser_enum.hpp                            |only
 inst/include/boost/xpressive/detail/dynamic/parser_traits.hpp                          |only
 inst/include/boost/xpressive/regex_actions.hpp                                         |only
 inst/include/boost/xpressive/regex_compiler.hpp                                        |only
 inst/include/boost/xpressive/xpressive.hpp                                             |only
 inst/include/boost/xpressive/xpressive_dynamic.hpp                                     |only
 man/BH-package.Rd                                                                      |    4 
 69 files changed, 294 insertions(+), 22 deletions(-)

More information about BH at CRAN
Permanent link

Package tmap updated to version 1.4-1 with previous version 1.4 dated 2016-03-18

Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre], Joel Gombin [ctb], Sebastian Jeworutzki [ctb], Kent Russell [ctb], Richard Zijdeman [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>

Diff between tmap versions 1.4 dated 2016-03-18 and 1.4-1 dated 2016-05-06

 DESCRIPTION                 |   10 
 MD5                         |  150 ++++----
 NAMESPACE                   |    5 
 NEWS                        |    9 
 R/animation_tmap.R          |    8 
 R/bb.R                      |    6 
 R/crop_shape.R              |only
 R/end_of_the_world.R        |   52 +-
 R/get_asp_ratio.R           |    2 
 R/get_proj4_code.R          |    2 
 R/get_raster_data.R         |   81 ++++
 R/gridplot.R                |   34 +
 R/is_num_string.R           |only
 R/legend_hist.R             |    6 
 R/map_coloring.R            |    2 
 R/meta_plot.R               |  789 ++++++--------------------------------------
 R/meta_plot_items.R         |only
 R/num2pal.R                 |   16 
 R/onLoad.R                  |    4 
 R/pkg.R                     |    5 
 R/plot_all.R                |    2 
 R/plot_map.R                |    2 
 R/plot_misc_functions.R     |   42 +-
 R/preprocess_gt.R           |    3 
 R/preprocess_shapes.R       |  149 +++++---
 R/print_tmap.R              |   52 ++
 R/process_bubbles.R         |    7 
 R/process_col_vector.R      |    2 
 R/process_facet_layout.R    |  109 ++++--
 R/process_fill.R            |    4 
 R/process_layers.R          |    2 
 R/process_lines.R           |    6 
 R/process_meta.R            |  106 ++++-
 R/process_raster.R          |   12 
 R/process_text.R            |   12 
 R/process_tm.R              |   20 -
 R/qtm.R                     |   11 
 R/read_GPX.R                |    2 
 R/read_osm.R                |    8 
 R/sample_dots.R             |    4 
 R/save_tmap.R               |    2 
 R/set_projection.R          |   15 
 R/smooth_map.R              |    6 
 R/text_functions.R          |only
 R/tm_layers.R               |   24 +
 R/tm_layout.R               |   59 ++-
 R/tm_misc_elements.R        |   34 +
 R/to_raster.R               |   12 
 R/view_tmap.R               |    5 
 build/vignette.rds          |binary
 data/Europe.rda             |binary
 inst/doc/tmap-modes.Rmd     |    2 
 inst/doc/tmap-modes.html    |   51 +-
 inst/doc/tmap-nutshell.R    |   41 +-
 inst/doc/tmap-nutshell.Rmd  |   50 +-
 inst/doc/tmap-nutshell.html |  129 +++----
 man/Shapes.Rd               |    4 
 man/animation_tmap.Rd       |   13 
 man/approx_areas.Rd         |    2 
 man/axis_labels.Rd          |only
 man/bb.Rd                   |    7 
 man/calc_densities.Rd       |    4 
 man/crop_shape.Rd           |only
 man/polygons.Rd             |   22 -
 man/qtm.Rd                  |    6 
 man/sample_dots.Rd          |   61 ---
 man/save_tmap.Rd            |    4 
 man/tm_compass.Rd           |    2 
 man/tm_credits.Rd           |    5 
 man/tm_facets.Rd            |    8 
 man/tm_layout.Rd            |   63 ++-
 man/tm_lines.Rd             |    2 
 man/tm_raster.Rd            |    5 
 man/tm_scale_bar.Rd         |    4 
 man/tm_text.Rd              |   18 -
 man/tmap-package.Rd         |    2 
 man/tmap_mode.Rd            |    3 
 vignettes/tmap-modes.Rmd    |    2 
 vignettes/tmap-nutshell.Rmd |   50 +-
 79 files changed, 1144 insertions(+), 1309 deletions(-)

More information about tmap at CRAN
Permanent link

New package supportInt with initial version 1.0
Package: supportInt
Type: Package
Title: Calculates Likelihood Support Intervals for Common Data Types
Version: 1.0
Date: 2016-05-04
Author: Derek Smith
Maintainer: Derek Smith <derek.smith@vanderbilt.edu>
Description: Calculates likelihood based support intervals for several common data types including binomial, Poisson, normal, lm(), and glm(). For the binomial, Poisson, and normal data likelihood intervals are calculated via root finding algorithm. Additional parameters allow the user to specify whether they would like to receive a parametric bootstrap estimate of the confidence level of said support interval. For lm() and glm(), the function returns profile likelihoods for each coefficient in the model.
Imports: ProfileLikelihood, splines
License: GPL-2
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-06 00:00:44 UTC; Derek
Repository: CRAN
Date/Publication: 2016-05-07 01:12:29

More information about supportInt at CRAN
Permanent link

Package SemiParBIVProbit updated to version 3.7-1 with previous version 3.7 dated 2016-03-04

Title: Semiparametric Copula Regression Models
Description: Routines for fitting copula models for binary and continuous responses with linear and nonlinear effects in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>

Diff between SemiParBIVProbit versions 3.7 dated 2016-03-04 and 3.7-1 dated 2016-05-06

 SemiParBIVProbit-3.7-1/SemiParBIVProbit/ChangeLog                           |    5 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/DESCRIPTION                         |   12 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/MD5                                 |  176 +-
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/NAMESPACE                           |   26 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/AT.r                              |   15 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/AT2.r                             |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/Amat.R                            |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/H.tri.R                           |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/H.triSS.r                         |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/LM.bpm.r                          |   18 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/OR.r                              |    6 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/RR.r                              |    8 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/SemiParBIVProbit.fit.R            |   53 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/SemiParBIVProbit.fit.post.r       |   84 -
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/SemiParBIVProbit.r                |  220 ++-
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/SemiParTRIVProbit.fit.post.r      |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/SemiParTRIVProbit.r               |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/adjCov.r                          |   41 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/adjCovSD.r                        |   37 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/bprobgHsCont3SS.r                 |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/bprobgHsContSS.r                  |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/bprobgHsContUniv.r                |   48 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/bprobgHsContUniv3.r               |   68 -
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/bprobgHsSS.r                      |  124 +-
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/copgHs.r                          |   69 -
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/copulaReg.fit.post.r              |   39 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/copulaReg.r                       |  199 ++-
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/copulaSampleSel.fit.post.r        |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/copulaSampleSel.r                 |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/distrHs.r                         |  508 +++++---
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/distrHsAT.r                       |   19 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/eta.tr.R                          |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/g.tri.R                           |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/g.triSS.r                         |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/gt.bpm.R                          |   18 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/jc.probs.r                        |  606 ++++++++--
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/mm.r                              |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/pen.r                             |   55 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/post.check.R                      |   25 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/prev.r                            |  126 +-
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.SemiParBIVProbit.r          |   14 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.SemiParTRIVProbit.r         |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.copulaReg.r                 |   53 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.copulaSampleSel.r           |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.summary.SemiParBIVProbit.r  |   24 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.summary.SemiParTRIVProbit.r |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.summary.copulaReg.r         |   56 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/print.summary.copulaSampleSel.r   |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/probm.R                           |    7 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/regH.r                            |    4 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/resp.check.R                      |   14 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/summary.SemiParBIVProbit.r        |   27 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/summary.SemiParTRIVProbit.r       |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/summary.copulaReg.r               |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/summary.copulaSampleSel.r         |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/triprobgHs.R                      |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/R/triprobgHsSS.R                    |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/data/hiv.RData                      |binary
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/AT.Rd                           |    7 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/Amat.Rd                         |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/H.tri.Rd                        |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/H.triSS.Rd                      |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/LM.bpm.Rd                       |    1 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/OR.Rd                           |    3 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/RR.Rd                           |    3 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParBIVProbit-package.Rd     |   85 -
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParBIVProbit.Rd             |   53 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParBIVProbitObject.Rd       |    5 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParTRIVProbit.Rd            |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParTRIVProbit.fit.post.Rd   |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/SemiParTRIVProbitObject.Rd      |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/VuongClarke.Rd                  |    7 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/bprobgHs.Rd                     |   10 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/bprobgHsCont3SS.Rd              |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/bprobgHsContSS.Rd               |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/bprobgHsSS.Rd                   |   13 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/conv.check.Rd                   |    3 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/copulaReg.Rd                    |   16 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/copulaSampleSel.Rd              |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/copulaSampleSel.fit.post.Rd     |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/copulaSampleSelObject.Rd        |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/g.tri.Rd                        |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/g.triSS.Rd                      |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/hiv.Rd                          |   81 -
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/jc.probs.Rd                     |   25 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/mm.Rd                           |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/plot.SemiParBIVProbit.Rd        |   11 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/polys.setup.Rd                  |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/post.check.Rd                   |    3 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/predict.SemiParBIVProbit.Rd     |   25 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/prev.Rd                         |   11 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.AT.Rd                     |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.AT2.Rd                    |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.OR.Rd                     |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.RR.Rd                     |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.SemiParBIVProbit.Rd       |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.SemiParTRIVProbit.Rd      |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.copulaReg.Rd              |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.copulaSampleSel.Rd        |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/print.prev.Rd                   |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/resp.check.Rd                   |    2 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/summary.SemiParBIVProbit.Rd     |   13 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/summary.SemiParTRIVProbit.Rd    |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/summary.copulaReg.Rd            |   21 
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/summary.copulaSampleSel.Rd      |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/triprobgHs.Rd                   |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/triprobgHsSS.Rd                 |only
 SemiParBIVProbit-3.7-1/SemiParBIVProbit/man/war.Rd                          |    3 
 SemiParBIVProbit-3.7/SemiParBIVProbit/man/print.summary.SemiParBIVProbit.Rd |only
 SemiParBIVProbit-3.7/SemiParBIVProbit/man/print.summary.copulaReg.Rd        |only
 110 files changed, 2224 insertions(+), 1003 deletions(-)

More information about SemiParBIVProbit at CRAN
Permanent link

Package rnn updated to version 0.5.0 with previous version 0.3.0 dated 2016-04-07

Title: Recurrent Neural Network
Description: Implementation of a Recurrent Neural Network in R.
Author: Bastiaan Quast [aut, cre]
Maintainer: Bastiaan Quast <bquast@gmail.com>

Diff between rnn versions 0.3.0 dated 2016-04-07 and 0.5.0 dated 2016-05-06

 rnn-0.3.0/rnn/R/int2binary.R                      |only
 rnn-0.3.0/rnn/R/sigmoid.R                         |only
 rnn-0.3.0/rnn/man/int2binary.Rd                   |only
 rnn-0.3.0/rnn/man/sigmoid.Rd                      |only
 rnn-0.3.0/rnn/man/sigmoid_output_to_derivative.Rd |only
 rnn-0.5.0/rnn/DESCRIPTION                         |    7 
 rnn-0.5.0/rnn/MD5                                 |   42 
 rnn-0.5.0/rnn/NAMESPACE                           |   12 
 rnn-0.5.0/rnn/NEWS                                |   20 
 rnn-0.5.0/rnn/R/bin2int.R                         |only
 rnn-0.5.0/rnn/R/int2bin.R                         |only
 rnn-0.5.0/rnn/R/predictr.R                        |only
 rnn-0.5.0/rnn/R/rnn.R                             |  158 --
 rnn-0.5.0/rnn/R/trainr.R                          |only
 rnn-0.5.0/rnn/README.md                           |   11 
 rnn-0.5.0/rnn/build/vignette.rds                  |binary
 rnn-0.5.0/rnn/inst/CITATION                       |only
 rnn-0.5.0/rnn/inst/doc/rnn.R                      |   87 -
 rnn-0.5.0/rnn/inst/doc/rnn.Rmd                    |  110 -
 rnn-0.5.0/rnn/inst/doc/rnn.html                   | 1700 +---------------------
 rnn-0.5.0/rnn/inst/doc/sinus.R                    |only
 rnn-0.5.0/rnn/inst/doc/sinus.Rmd                  |only
 rnn-0.5.0/rnn/inst/doc/sinus.html                 |only
 rnn-0.5.0/rnn/man/bin2int.Rd                      |only
 rnn-0.5.0/rnn/man/int2bin.Rd                      |only
 rnn-0.5.0/rnn/man/predictr.Rd                     |only
 rnn-0.5.0/rnn/man/rnn.Rd                          |   50 
 rnn-0.5.0/rnn/man/trainr.Rd                       |only
 rnn-0.5.0/rnn/tests/testthat/test_rnn.R           |   45 
 rnn-0.5.0/rnn/vignettes/rnn.Rmd                   |  110 -
 rnn-0.5.0/rnn/vignettes/sinus.Rmd                 |only
 31 files changed, 383 insertions(+), 1969 deletions(-)

More information about rnn at CRAN
Permanent link

New package RSAgeo with initial version 1.0
Package: RSAgeo
Type: Package
Title: Resampling-Based Analysis of Geostatistical Data
Version: 1.0
Date: 2016-5-5
Author: Yichen Cheng, Faming Liang
Maintainer: Yichen Cheng <yichen.cheng.cc@gmail.com>
Description: RSAgeo performs parameter estimation for geostatistical data using a resampling-based stochastic approximation (RSA) method.
License: GPL-3
Packaged: 2016-05-05 17:40:11 UTC; ycheng
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-05-07 01:08:38

More information about RSAgeo at CRAN
Permanent link

Package PenCoxFrail updated to version 1.0.1 with previous version 1.0.0 dated 2016-03-14

Title: Regularization in Cox Frailty Models
Description: A regularization approach for Cox Frailty Models by penalization methods is provided.
Author: Andreas Groll
Maintainer: Andreas Groll <groll@mathematik.uni-muenchen.de>

Diff between PenCoxFrail versions 1.0.0 dated 2016-03-14 and 1.0.1 dated 2016-05-06

 DESCRIPTION         |    9 +++++----
 MD5                 |    6 +++---
 man/pencoxfrail.rd  |    4 ++--
 src/IntegrMulti.cpp |    1 -
 4 files changed, 10 insertions(+), 10 deletions(-)

More information about PenCoxFrail at CRAN
Permanent link

New package originr with initial version 0.1.0
Package: originr
Type: Package
Title: Fetch Species Origin Data from the Web
Description: Get species origin data (whether species is native/invasive) from the following sources on the web: Encyclopedia of Life (<http://eol.org>), Flora 'Europaea' (<http://rbg-web2.rbge.org.uk/FE/fe.html>), Global Invasive Species Database (<http://www.iucngisd.org/gisd>), the Native Species Resolver (<http://bien.nceas.ucsb.edu/bien/tools/nsr/nsr-ws/>), and Integrated Taxonomic Information Service (<http://www.itis.gov/>).
Version: 0.1.0
Authors@R: c( person("Scott", "Chamberlain", role = c("aut", "cre"), email = "myrmecocystus@gmail.com"), person("Ignasi", "Bartomeus", role = "aut", email = "nacho.bartomeus@gmail.com") )
License: MIT + file LICENSE
URL: https://github.com/ropenscilabs/originr
BugReports: https://github.com/ropenscilabs/originr/issues
Imports: stats, httr (>= 1.1.0), jsonlite (>= 0.9.19), data.table, xml2, taxize
Suggests: testthat, roxygen2 (>= 5.0.1), covr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-06 05:06:49 UTC; sacmac
Author: Scott Chamberlain [aut, cre], Ignasi Bartomeus [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Repository: CRAN
Date/Publication: 2016-05-07 00:42:08

More information about originr at CRAN
Permanent link

New package nasadata with initial version 0.9.0
Package: nasadata
Type: Package
Title: Interface to Various NASA API's
Version: 0.9.0
Author: Eduardo Flores
Maintainer: Eduardo Flores <eduardo@enelmargen.org>
Description: Provides functions to access NASA's Earth Imagery and Assets API and the Earth Observatory Natural Event Tracker (EONET) webservice.
License: CC0
Imports: plyr, dplyr, png, jsonlite
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-06 06:20:33 UTC; eduardoflores
Repository: CRAN
Date/Publication: 2016-05-07 00:41:17

More information about nasadata at CRAN
Permanent link

Package geozoo updated to version 0.5.1 with previous version 0.5.0 dated 2016-01-13

Title: Zoo of Geometric Objects
Description: Geometric objects defined in 'geozoo' can be simulated or displayed in the R package 'tourr'.
Author: Barret Schloerke [aut, cre], Di Cook [ths], Hadley Wickham [ths]
Maintainer: Barret Schloerke <schloerke@gmail.com>

Diff between geozoo versions 0.5.0 dated 2016-01-13 and 0.5.1 dated 2016-05-06

 DESCRIPTION          |   10 +++++-----
 MD5                  |   12 +++++++-----
 NAMESPACE            |    2 ++
 NEWS                 |   11 +++++++++++
 R/simplex.R          |   29 ++++++++++++++++++++++++++---
 README.md            |    3 ++-
 man/f_composition.Rd |only
 man/f_helmert.Rd     |only
 8 files changed, 53 insertions(+), 14 deletions(-)

More information about geozoo at CRAN
Permanent link

Package FADA updated to version 1.3.1 with previous version 1.2 dated 2014-10-14

Title: Variable Selection for Supervised Classification in High Dimension
Description: The functions provided in the FADA (Factor Adjusted Discriminant Analysis) package aim at performing supervised classification of high-dimensional and correlated profiles. The procedure combines a decorrelation step based on a factor modeling of the dependence among covariates and a classification method. The available methods are Lasso regularized logistic model (see Friedman et al. (2010)), sparse linear discriminant analysis (see Clemmensen et al. (2011)), shrinkage linear and diagonal discriminant analysis (see M. Ahdesmaki et al. (2010)). More methods of classification can be used on the decorrelated data provided by the package FADA.
Author: Emeline Perthame (INRIA, Grenoble, France), Chloe Friguet (Universite de Bretagne Sud, Vannes, France) and David Causeur (Agrocampus Ouest, Rennes, France)
Maintainer: David Causeur <david.causeur@agrocampus-ouest.fr>

Diff between FADA versions 1.2 dated 2014-10-14 and 1.3.1 dated 2016-05-06

 DESCRIPTION              |   19 +-
 MD5                      |   19 +-
 NAMESPACE                |    8 
 R/FADA.R                 |  109 +------------
 R/decorrelate.test.R     |   59 ++++---
 R/decorrelate.train.R    |  378 ++++++++++-------------------------------------
 R/func.R                 |only
 man/FADA-package.Rd      |    2 
 man/FADA.Rd              |   28 ---
 man/decorrelate.test.Rd  |    2 
 man/decorrelate.train.Rd |   31 +--
 11 files changed, 177 insertions(+), 478 deletions(-)

More information about FADA at CRAN
Permanent link

Package umx updated to version 1.2.7 with previous version 1.2.5 dated 2016-04-03

Title: Structural Equation Modelling in R with 'OpenMx'
Description: Create, run, and report structural equation and twin models quickly. If you're just starting out, try typing '?umx'.
Author: Timothy C Bates [aut, cre]
Maintainer: Timothy C Bates <timothy.c.bates@gmail.com>

Diff between umx versions 1.2.5 dated 2016-04-03 and 1.2.7 dated 2016-05-06

 umx-1.2.5/umx/man/figures/mike_vcu_mx.jpg        |only
 umx-1.2.5/umx/man/summaryAPA.Rd                  |only
 umx-1.2.5/umx/man/umx_cont_2_ordinal.Rd          |only
 umx-1.2.5/umx/man/umx_fake_data.Rd               |only
 umx-1.2.7/umx/DESCRIPTION                        |   10 
 umx-1.2.7/umx/MD5                                |  117 ++--
 umx-1.2.7/umx/NAMESPACE                          |   11 
 umx-1.2.7/umx/NEWS                               |  161 ++---
 umx-1.2.7/umx/R/build_run_modify.r               |   35 -
 umx-1.2.7/umx/R/fit_and_reporting.r              |  123 ++--
 umx-1.2.7/umx/R/misc_and_utility.r               |  638 ++++++++++++++---------
 umx-1.2.7/umx/R/model_builders.r                 |  121 +++-
 umx-1.2.7/umx/R/xmu.r                            |    3 
 umx-1.2.7/umx/README.md                          |   17 
 umx-1.2.7/umx/inst/CITATION                      |   10 
 umx-1.2.7/umx/man/getOpenMx.Rd                   |    4 
 umx-1.2.7/umx/man/loadings.MxModel.Rd            |    6 
 umx-1.2.7/umx/man/loadings.Rd                    |    8 
 umx-1.2.7/umx/man/plot.MxModel.Rd                |   19 
 umx-1.2.7/umx/man/umx.Rd                         |   11 
 umx-1.2.7/umx/man/umxAPA.Rd                      |only
 umx-1.2.7/umx/man/umxCI.Rd                       |    9 
 umx-1.2.7/umx/man/umxCP.Rd                       |    9 
 umx-1.2.7/umx/man/umxCovData.Rd                  |    7 
 umx-1.2.7/umx/man/umxEFA.Rd                      |   15 
 umx-1.2.7/umx/man/umxFactor.Rd                   |   20 
 umx-1.2.7/umx/man/umxHetCor.Rd                   |    7 
 umx-1.2.7/umx/man/umxIP.Rd                       |    4 
 umx-1.2.7/umx/man/umxJiggle.Rd                   |    3 
 umx-1.2.7/umx/man/umxPadAndPruneForDefVars.Rd    |    7 
 umx-1.2.7/umx/man/umxTwoStage.Rd                 |only
 umx-1.2.7/umx/man/umx_APA_pval.Rd                |    2 
 umx-1.2.7/umx/man/umx_aggregate.Rd               |    2 
 umx-1.2.7/umx/man/umx_as_numeric.Rd              |    7 
 umx-1.2.7/umx/man/umx_cont_2_quantiles.Rd        |only
 umx-1.2.7/umx/man/umx_cov2raw.Rd                 |    7 
 umx-1.2.7/umx/man/umx_default_option.Rd          |    1 
 umx-1.2.7/umx/man/umx_get_checkpoint.Rd          |    1 
 umx-1.2.7/umx/man/umx_get_cores.Rd               |    1 
 umx-1.2.7/umx/man/umx_get_optimizer.Rd           |    1 
 umx-1.2.7/umx/man/umx_lower2full.Rd              |    6 
 umx-1.2.7/umx/man/umx_make.Rd                    |only
 umx-1.2.7/umx/man/umx_make_MR_data.Rd            |only
 umx-1.2.7/umx/man/umx_make_bin_cont_pair_data.Rd |    7 
 umx-1.2.7/umx/man/umx_make_fake_data.Rd          |only
 umx-1.2.7/umx/man/umx_merge_CIs.Rd               |    7 
 umx-1.2.7/umx/man/umx_pb_note.Rd                 |    2 
 umx-1.2.7/umx/man/umx_print.Rd                   |    2 
 umx-1.2.7/umx/man/umx_read_lower.Rd              |    7 
 umx-1.2.7/umx/man/umx_reorder.Rd                 |    7 
 umx-1.2.7/umx/man/umx_residualize.Rd             |   17 
 umx-1.2.7/umx/man/umx_round.Rd                   |    7 
 umx-1.2.7/umx/man/umx_scale.Rd                   |    7 
 umx-1.2.7/umx/man/umx_scale_wide_twin_data.Rd    |   19 
 umx-1.2.7/umx/man/umx_set_auto_plot.Rd           |    1 
 umx-1.2.7/umx/man/umx_set_auto_run.Rd            |    1 
 umx-1.2.7/umx/man/umx_set_checkpoint.Rd          |    1 
 umx-1.2.7/umx/man/umx_set_condensed_slots.Rd     |only
 umx-1.2.7/umx/man/umx_set_cores.Rd               |    1 
 umx-1.2.7/umx/man/umx_set_optimizer.Rd           |    1 
 umx-1.2.7/umx/man/umx_set_plot_format.Rd         |    1 
 umx-1.2.7/umx/man/umx_set_table_format.Rd        |    1 
 umx-1.2.7/umx/man/umx_show.Rd                    |    2 
 umx-1.2.7/umx/man/umx_swap_a_block.Rd            |    7 
 umx-1.2.7/umx/man/umx_time.Rd                    |    4 
 65 files changed, 934 insertions(+), 571 deletions(-)

More information about umx at CRAN
Permanent link

New package lmem.gwaser with initial version 0.1.0
Package: lmem.gwaser
Type: Package
Title: Linear Mixed Effects Models for Genome-Wide Association Studies
Version: 0.1.0
Authors@R: c(person("Lucia", "Gutierrez", role = "aut", email = "gutierrezcha@wisc.edu"), person("Gaston", "Quero",role =c("aut","cre"), email = "gastonquero@gmail.com"), person("Schubert", "Fernandez",role ="aut", email = "sfernandez@inia.org.uy"), person("Sofia", "Brandariz",role ="aut", email = "brandarizsofia@gmail.com"), person("Sebastian", "Simondi",role ="ctb", email = "sebastian.simondi@gmail.com"))
Author: Lucia Gutierrez [aut], Gaston Quero [aut, cre], Schubert Fernandez [aut], Sofia Brandariz [aut], Sebastian Simondi [ctb]
Maintainer: Gaston Quero <gastonquero@gmail.com>
Description: Performs Genome-Wide Association analysis for diverse populations and for multi-environment and multi-trait analysis using linear mixed models.
License: GPL-3
Depends: R (>= 2.10)
LazyData: TRUE
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
Imports: qtl, lattice, pastecs, stringr, fdrtool, LDheatmap, genetics, graphics, utils, grDevices, stats, lme4
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-05 23:08:29 UTC; GQ
Repository: CRAN
Date/Publication: 2016-05-06 23:00:33

More information about lmem.gwaser at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.