Mon, 27 Jun 2016

Package rrecsys updated to version 0.9.5.4 with previous version 0.9.5.3 dated 2016-06-21

Title: Environment for Assessing Recommender Systems
Description: Provides implementations of several popular recommendation systems. They can process standard recommendation datasets (user/item matrix) as input and generate rating predictions and recommendation lists. Standard algorithm implementations included in this package are: Global/Item/User-Average baselines, Item-Based KNN, FunkSVD, BPR and weighted ALS. They can be assessed according to the standard offline evaluation methodology for recommender systems using measures such as MAE, RMSE, Precision, Recall, AUC, NDCG, RankScore and coverage measures. The package is intended for rapid prototyping of recommendation algorithms and education purposes.
Author: Ludovik Çoba [aut, cre, cph], Markus Zanker [ctb]
Maintainer: Ludovik Çoba <lcoba@unishk.edu.al>

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New package pim with initial version 2.0.0.2
Package: pim
Type: Package
Title: Fit Probabilistic Index Models
Version: 2.0.0.2
Date: 2016-06-27
Authors@R: c(person("Joris","Meys", email = "Joris.Meys@UGent.be", role = c('aut', 'cre')),person("Jan","De Neve", email = "Jan.DeNeve@UGent.be", role = 'aut'), person("Nick","Sabbe", role = 'aut'))
Author: Joris Meys [aut, cre], Jan De Neve [aut], Nick Sabbe [aut]
Maintainer: Joris Meys <Joris.Meys@UGent.be>
Description: Fit a probabilistic index model as described in Thas et al <doi:10.1111/j.1467-9868.2011.01020.x>. The interface to the modeling function has changed in this new version. The old version is still available at R-Forge. You can install the old package using install.packages('pimold', repos = 'http://R-Forge.R-project.org').
Depends: R (>= 3.0), utils
Imports: methods, stats4, nleqslv, BB
License: GPL (>= 2)
URL: http://r-forge.r-project.org/projects/pim/
Collate: 'CreateScoreFun.R' 'DysData.R' 'EngelData.R' 'Estimators.R' 'pim.poset-class.R' 'pim.environment-class.R' 'pim-package.R' 'pim.formula-class.R' 'pim-class.R' 'pim.summary-class.R' 'Extract.pim.summary.R' 'FEVData.R' 'Getters.R' 'Getters_pim.R' 'Getters_pim.formula.R' 'InternalFunctions.R' 'InternalObjects.R' 'LR.R' 'MHData.R' 'P.R' 'SUData.R' 'add.poset.R' 'as.data.frame.pim.environment.R' 'as.matrix.pim.summary.R' 'coef.R' 'confint.pim.R' 'create.poset.R' 'formula.R' 'has.intercept.R' 'is.complete.R' 'make.posfun.R' 'model.matrix.pim.R' 'new.pim.R' 'new.pim.env.R' 'new.pim.formula.R' 'new.pim.poset.R' 'nobs.R' 'penv.R' 'pim.R' 'pim.fit.R' 'pimdata.R' 'poset.R' 'print.R' 'response.R' 'sandwich.estimator.R' 'summary.R' 'vcov.R' 'vcov.estimators.R' 'vcov.internal.R' 'zzz.R'
Suggests: testthat, MASS
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-06-27 13:02:40 UTC; Joris
Repository: CRAN
Date/Publication: 2016-06-27 17:22:49

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Package meteR updated to version 1.2 with previous version 1.1 dated 2016-02-26

Title: Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)
Description: Fit and plot macroecological patterns predicted by the Maximum Entropy Theory of Ecology (METE).
Author: Andy Rominger, Cory Merow
Maintainer: Cory Merow <cory.merow@gmail.com>

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 meteR-1.2/meteR/DESCRIPTION                                                                                 |   14 
 meteR-1.2/meteR/MD5                                                                                         |  178 +---------
 meteR-1.2/meteR/NAMESPACE                                                                                   |    1 
 meteR-1.2/meteR/R/ipd.meteESF.R                                                                             |   31 +
 meteR-1.2/meteR/R/logLik.meteDist.R                                                                         |   57 ++-
 meteR-1.2/meteR/R/meteDist2Rank.R                                                                           |    5 
 meteR-1.2/meteR/R/meteESF.R                                                                                 |   53 +-
 meteR-1.2/meteR/R/meteSSF.R                                                                                 |    3 
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 meteR-1.2/meteR/R/residuals.meteRelat.R                                                                     |    4 
 meteR-1.2/meteR/R/sad.meteESF.R                                                                             |   14 
 meteR-1.2/meteR/R/sar.R                                                                                     |   18 -
 meteR-1.2/meteR/R/sar_helper_funs.R                                                                         |    2 
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 meteR-1.2/meteR/man/logLikZ.Rd                                                                              |   14 
 meteR-1.2/meteR/man/meteSAR.Rd                                                                              |   14 
 meteR-1.2/meteR/man/mseZ.Rd                                                                                 |   15 
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New package optiSel with initial version 0.1
Package: optiSel
Type: Package
Title: Optimum Contribution Selection and Pedigree Analysis
Version: 0.1
Date: 2016-06-24
Author: Robin Wellmann
Maintainer: Robin Wellmann <r.wellmann@uni-hohenheim.de>
Depends: R (>= 3.2.4)
Imports: GENLIB, Matrix, Rcsdp, alabama, cccp, kinship2, nadiv, nloptr, pedigree, pspline, stringr, MASS, methods, stats
Description: Computation of optimum contributions of selection candidates in animal breeding, genetic contributions, the native effective size, native genome equivalents, the diversity of native alleles, and pedigree completeness. Moreover, functions are provided for preparing and plotting pedigrees.
License: GPL-2
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-06-27 11:51:59 UTC; Robin
Repository: CRAN
Date/Publication: 2016-06-27 17:22:52

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Package derivmkts updated to version 0.2.1 with previous version 0.2.0 dated 2016-05-08

Title: Functions and R Code to Accompany Derivatives Markets
Description: A set of pricing and expository functions that should be useful in teaching a course on financial derivatives.
Author: Robert McDonald [aut, cre, cph]
Maintainer: Robert McDonald <rmcd1024@gmail.com>

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Package vardpoor updated to version 0.7.0 with previous version 0.6.4 dated 2016-06-16

Title: Variance Estimation for Sample Surveys by the Ultimate Cluster Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre], Martins Liberts [aut], Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>

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Package fastR updated to version 1.0 with previous version 0.10.2 dated 2015-12-18

Title: Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Fast covariance matrix calculation, Mahalanobis distance and column-wise variances are some of the functions.
Author: Michail Tsagris and Manos Papadakis
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>

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Package nleqslv updated to version 3.0.2 with previous version 3.0.1 dated 2016-05-03

Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method with a choice of global strategies such as line search and trust region. There are options for using a numerical or user supplied Jacobian, for specifying a banded numerical Jacobian and for allowing a singular or ill-conditioned Jacobian.
Author: Berend Hasselman
Maintainer: Berend Hasselman <bhh@xs4all.nl>

Diff between nleqslv versions 3.0.1 dated 2016-05-03 and 3.0.2 dated 2016-06-27

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Package CUFF updated to version 1.2 with previous version 1.1 dated 2016-06-01

Title: Charles's Utility Function using Formula
Description: Utility functions that provides wrapper to descriptive base functions like cor, mean and table. It makes use of the formula interface to pass variables to functions. It also provides operators to concatenate (%+%), to repeat (%n%) and manage character vectors for nice display.
Author: Charles-Édouard Giguère
Maintainer: Charles-Édouard Giguère <ce.giguere@gmail.com>

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Package Compind updated to version 1.1.2 with previous version 1.1 dated 2015-09-08

Title: Composite Indicators Functions
Description: Contains several functions to enhance approaches to the Composite Indicators methods, focusing, in particular, on the normalisation and weighting-aggregation steps.
Author: Francesco Vidoli, Elisa Fusco
Maintainer: Francesco Vidoli <fvidoli@gmail.com>

Diff between Compind versions 1.1 dated 2015-09-08 and 1.1.2 dated 2016-06-27

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Package ldamatch updated to version 1.0.1 with previous version 1.0.0 dated 2016-06-21

Title: Selection of Statistically Similar Research Groups
Description: Select statistically similar research groups by backward selection using various robust algorithms, including a heuristic based on linear discriminant analysis, multiple heuristics based on the test statistic, and parallelized exhaustive search.
Author: Kyle Gorman [aut, cre], Geza Kiss [aut]
Maintainer: Kyle Gorman <kylebgorman@gmail.com>

Diff between ldamatch versions 1.0.0 dated 2016-06-21 and 1.0.1 dated 2016-06-27

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Package rvg updated to version 0.1.0 with previous version 0.0.9 dated 2016-04-29

Title: R Graphics Devices for Vector Graphics Output
Description: Vector Graphics devices for 'SVG', 'DrawingML' for Microsoft Word, PowerPoint and Excel.
Author: David Gohel [aut, cre], Bob Rudis [ctb] (the javascript code used by function set_attr), Francois Brunetti [ctb] (clipping algorithms)
Maintainer: David Gohel <david.gohel@ardata.fr>

Diff between rvg versions 0.0.9 dated 2016-04-29 and 0.1.0 dated 2016-06-27

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New package SeqMADE with initial version 1.0
Package: SeqMADE
Type: Package
Title: Network Module-Based Model in the Differential Expression Analysis for RNA-Seq
Version: 1.0
Date: 2016-06-27
Author: Mingli Lei, Jia Xu, Li-Ching Huang, Lily Wang, Jing Li
Maintainer: Mingli Lei<leimingli2013@sjtu.edu.cn>
Description: A network module-based generalized linear model for differential expression analysis with the count-based sequence data from RNA-Seq.
License: GPL (>= 2)
Depends: R (>= 2.1.0),MASS
Repository: CRAN
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-06-27 03:06:53 UTC; Mingli Lei
Date/Publication: 2016-06-27 06:59:54

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Package rstudioapi updated to version 0.6 with previous version 0.5 dated 2016-01-24

Title: Safely Access the RStudio API
Description: Access the RStudio API (if available) and provide informative error messages when it's not.
Author: Hadley Wickham [aut], JJ Allaire [aut, cre], Kevin Ushey [ctb], RStudio [cph]
Maintainer: JJ Allaire <jj@rstudio.com>

Diff between rstudioapi versions 0.5 dated 2016-01-24 and 0.6 dated 2016-06-27

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New package IntegrateBs with initial version 0.1.0
Package: IntegrateBs
Title: Integration for B-Spline
Version: 0.1.0
Authors@R: person("Yue", "Bai", email = "bai42@wisc.edu", role = c("aut", "cre"))
Maintainer: Yue Bai <bai42@wisc.edu>
Description: Integrated B-spline function.
Depends: R (>= 3.0.2)
License: GPL-2
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-06-26 14:03:37 UTC; dudupiggy
Author: Yue Bai [aut, cre]
Repository: CRAN
Date/Publication: 2016-06-27 06:59:52

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Package gkmSVM updated to version 0.70 with previous version 0.65 dated 2015-12-08

Title: Gapped-Kmer Support Vector Machine
Description: Imports the 'gkmSVM' v2.0 functionalities into R (www.beerlab.org/gkmsvm). It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms.
Author: Mahmoud Ghandi
Maintainer: Mahmoud Ghandi <mghandi@gmail.com>

Diff between gkmSVM versions 0.65 dated 2015-12-08 and 0.70 dated 2016-06-27

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New package fuzzr with initial version 0.1.0
Package: fuzzr
Type: Package
Title: Fuzz-Test R Functions
Version: 0.1.0
Authors@R: person("Matthew", "Lincoln", email = "matthew.d.lincoln@gmail.com", role = c("aut", "cre"))
Description: Test function arguments with a wide array of inputs, and produce reports summarizing messages, warnings, errors, and returned values.
License: MIT + file LICENSE
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: assertthat, progress, purrr, tidyr
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
URL: https://github.com/mdlincoln/fuzzr
BugReports: https://github.com/mdlincoln/fuzzr/issues
NeedsCompilation: no
Packaged: 2016-06-26 17:23:31 UTC; admin
Author: Matthew Lincoln [aut, cre]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>
Repository: CRAN
Date/Publication: 2016-06-27 07:00:02

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Package future.BatchJobs updated to version 0.12.1 with previous version 0.12.0 dated 2016-06-26

Title: A Future for BatchJobs
Description: Simple parallel and distributed processing using futures that utilizes the 'BatchJobs' framework, e.g. 'fit %<-% { glm(y ~ x + z) }'. This package implements the Future API of the 'future' package.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between future.BatchJobs versions 0.12.0 dated 2016-06-26 and 0.12.1 dated 2016-06-27

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New package dtplyr with initial version 0.0.1
Package: dtplyr
Title: Data Table Back-End for 'dplyr'
Version: 0.0.1
Authors@R: c( person("Hadley", "Wickham", , "hadley@rstudio.com", role = c("aut", "cre")), person("RStudio", role = "cph") )
Description: This implements the data table back-end for 'dplyr' so that you can seamlessly use data table and 'dplyr' together.
License: GPL (>= 2)
Imports: dplyr (>= 0.5.0), data.table, lazyeval
Suggests: Lahman, nycflights13, testthat, covr
LazyData: true
RoxygenNote: 5.0.1
URL: https://github.com/hadley/dtplyr
BugReports: https://github.com/hadley/dtplyr/issues
NeedsCompilation: no
Packaged: 2016-06-26 15:50:06 UTC; hadley
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Repository: CRAN
Date/Publication: 2016-06-27 06:59:59

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Package archivist.github updated to version 0.2.1 with previous version 0.2.0 dated 2016-06-13

Title: Tools for Archiving, Managing and Sharing R Objects via GitHub
Description: The extension of the 'archivist' package integrating the archivist with GitHub via GitHub API, 'git2r' packages and 'httr' package.
Author: Marcin Kosinski [aut, cre], Przemyslaw Biecek [aut]
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>

Diff between archivist.github versions 0.2.0 dated 2016-06-13 and 0.2.1 dated 2016-06-27

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