Title: Subgroup Identification Based on Differential Effect Search
Description: Provides function to apply "Subgroup Identification based on Differential Effect Search" (SIDES) method proposed by Lipkovich et al. (2011) <doi:10.1002/sim.4289>.
Author: Marie-Karelle Riviere
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>
Diff between SIDES versions 1.1 dated 2016-06-29 and 1.2 dated 2016-07-12
DESCRIPTION | 6 +++--- MD5 | 4 ++-- NAMESPACE | 5 +++++ 3 files changed, 10 insertions(+), 5 deletions(-)
Title: Extreme Gradient Boosting
Description: Extreme Gradient Boosting, which is an
efficient implementation of gradient boosting framework.
This package is its R interface. The package includes efficient
linear model solver and tree learning algorithms. The package can automatically
do parallel computation on a single machine which could be more than 10 times faster
than existing gradient boosting packages. It supports various
objective functions, including regression, classification and ranking. The
package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Author: Tianqi Chen <tianqi.tchen@gmail.com>, Tong He <hetong007@gmail.com>, Michael Benesty <michael@benesty.fr>
Maintainer: Tong He <hetong007@gmail.com>
Diff between xgboost versions 0.4-3 dated 2016-02-15 and 0.4-4 dated 2016-07-12
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/src/io/page_dmatrix-inl.hpp | 12 ++++++------ 3 files changed, 12 insertions(+), 12 deletions(-)
Title: Predicting Species Accumulation Curves
Description: Estimating the number of species represented r or more times in a random sample.
Author: Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer: Chao Deng <chaodeng@usc.edu>
Diff between preseqR versions 2.0.1 dated 2016-07-12 and 2.0.1.1 dated 2016-07-12
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/continued_fraction.cpp | 5 +++-- src/continued_fraction_c_interface.cpp | 5 +++-- 4 files changed, 12 insertions(+), 10 deletions(-)
Title: Morphological Analysis and Spell Checker for R
Description: A spell checker and morphological analyzer library designed for
languages with rich morphology and complex word compounding or character
encoding. The package can check and analyze individual words as well as
search for incorrect words within a text, latex or manual document. Use
the 'devtools' package to spell R documentation with 'hunspell'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between hunspell versions 1.2 dated 2016-03-19 and 1.4 dated 2016-07-12
hunspell-1.2/hunspell/configure |only hunspell-1.2/hunspell/src/Makevars.in |only hunspell-1.2/hunspell/src/Makevars.win |only hunspell-1.2/hunspell/src/parsers/latexparser.cpp |only hunspell-1.2/hunspell/src/parsers/manparser.cpp |only hunspell-1.2/hunspell/src/parsers/readme.txt |only hunspell-1.2/hunspell/src/parsers/textparser.cpp |only hunspell-1.2/hunspell/tools |only hunspell-1.4/hunspell/DESCRIPTION | 14 +- hunspell-1.4/hunspell/LICENSE.note |only hunspell-1.4/hunspell/MD5 | 79 +++++++++--- hunspell-1.4/hunspell/NEWS | 5 hunspell-1.4/hunspell/R/hunspell.R | 35 +++-- hunspell-1.4/hunspell/README.md |only hunspell-1.4/hunspell/inst/dict/en_GB.aff |only hunspell-1.4/hunspell/inst/dict/en_GB.dic |only hunspell-1.4/hunspell/man/hunspell.Rd | 26 ++-- hunspell-1.4/hunspell/src/Makevars |only hunspell-1.4/hunspell/src/RcppExports.cpp | 28 ++-- hunspell-1.4/hunspell/src/check.cpp | 16 +- hunspell-1.4/hunspell/src/config.h |only hunspell-1.4/hunspell/src/find.cpp | 87 ++++++++------ hunspell-1.4/hunspell/src/hunspell |only hunspell-1.4/hunspell/src/parsers/firstparser.cc |only hunspell-1.4/hunspell/src/parsers/firstparser.hxx |only hunspell-1.4/hunspell/src/parsers/htmlparser.cc |only hunspell-1.4/hunspell/src/parsers/htmlparser.hxx |only hunspell-1.4/hunspell/src/parsers/latexparser.cc |only hunspell-1.4/hunspell/src/parsers/latexparser.hxx | 6 hunspell-1.4/hunspell/src/parsers/manparser.cc |only hunspell-1.4/hunspell/src/parsers/manparser.hxx | 6 hunspell-1.4/hunspell/src/parsers/odfparser.cc |only hunspell-1.4/hunspell/src/parsers/odfparser.hxx |only hunspell-1.4/hunspell/src/parsers/testparser.cc |only hunspell-1.4/hunspell/src/parsers/textparser.cc |only hunspell-1.4/hunspell/src/parsers/textparser.hxx | 42 +++--- hunspell-1.4/hunspell/src/parsers/xmlparser.cc |only hunspell-1.4/hunspell/src/parsers/xmlparser.hxx |only hunspell-1.4/hunspell/src/utils.h | 111 ++++++++++-------- hunspell-1.4/hunspell/tests/testthat/test_encodings.R | 2 hunspell-1.4/hunspell/tests/testthat/test_parser.R |only 41 files changed, 282 insertions(+), 175 deletions(-)
Title: Simple Variable Treatment
Description: A data.frame processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner.
Prepares variables so that data has fewer exceptional cases, making
it easier to safely use models in production. Common problems 'vtreat' defends
against: Inf, NA, too many categorical levels, rare categorical levels, new
categorical levels (levels seen during application, but not during training).
'vtreat::prepare' should be used as you would use 'model.matrix'.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>
Diff between vtreat versions 0.5.25 dated 2016-05-03 and 0.5.26 dated 2016-07-12
vtreat-0.5.25/vtreat/inst/doc/vtreatSignifcance.R |only vtreat-0.5.25/vtreat/inst/doc/vtreatSignifcance.Rmd |only vtreat-0.5.25/vtreat/inst/doc/vtreatSignifcance.html |only vtreat-0.5.25/vtreat/vignettes/vtreatSignifcance.Rmd |only vtreat-0.5.26/vtreat/DESCRIPTION | 10 vtreat-0.5.26/vtreat/MD5 | 114 +- vtreat-0.5.26/vtreat/NAMESPACE | 7 vtreat-0.5.26/vtreat/R/cleanTreatment.R | 11 vtreat-0.5.26/vtreat/R/deviationFact.R | 3 vtreat-0.5.26/vtreat/R/effectTreatmentC.R | 38 vtreat-0.5.26/vtreat/R/effectTreatmentN.R | 17 vtreat-0.5.26/vtreat/R/indicatorTreatment.R | 14 vtreat-0.5.26/vtreat/R/isBadTreatment.R | 11 vtreat-0.5.26/vtreat/R/outOfSample.R | 461 +++++++++- vtreat-0.5.26/vtreat/R/prevalenceFact.R | 22 vtreat-0.5.26/vtreat/R/utils.R | 75 + vtreat-0.5.26/vtreat/R/vtreat.R | 52 - vtreat-0.5.26/vtreat/R/vtreatImpl.R | 58 - vtreat-0.5.26/vtreat/README.md | 81 - vtreat-0.5.26/vtreat/build/vignette.rds |binary vtreat-0.5.26/vtreat/inst/doc/vtreat.Rmd | 6 vtreat-0.5.26/vtreat/inst/doc/vtreat.html | 176 ++- vtreat-0.5.26/vtreat/inst/doc/vtreatCrossFrames.R | 41 vtreat-0.5.26/vtreat/inst/doc/vtreatCrossFrames.Rmd | 60 - vtreat-0.5.26/vtreat/inst/doc/vtreatCrossFrames.html | 186 ++-- vtreat-0.5.26/vtreat/inst/doc/vtreatGrouping.R |only vtreat-0.5.26/vtreat/inst/doc/vtreatGrouping.Rmd |only vtreat-0.5.26/vtreat/inst/doc/vtreatGrouping.html |only vtreat-0.5.26/vtreat/inst/doc/vtreatOverfit.html | 44 vtreat-0.5.26/vtreat/inst/doc/vtreatScaleMode.R | 44 vtreat-0.5.26/vtreat/inst/doc/vtreatScaleMode.Rmd | 117 ++ vtreat-0.5.26/vtreat/inst/doc/vtreatScaleMode.html | 139 ++- vtreat-0.5.26/vtreat/inst/doc/vtreatSignificance.R |only vtreat-0.5.26/vtreat/inst/doc/vtreatSignificance.Rmd |only vtreat-0.5.26/vtreat/inst/doc/vtreatSignificance.html |only vtreat-0.5.26/vtreat/inst/doc/vtreatSplitting.R |only vtreat-0.5.26/vtreat/inst/doc/vtreatSplitting.Rmd |only vtreat-0.5.26/vtreat/inst/doc/vtreatSplitting.html |only vtreat-0.5.26/vtreat/inst/doc/vtreatVariableTypes.Rmd | 4 vtreat-0.5.26/vtreat/inst/doc/vtreatVariableTypes.html | 67 - vtreat-0.5.26/vtreat/man/buildEvalSets.Rd | 39 vtreat-0.5.26/vtreat/man/catScore.Rd | 17 vtreat-0.5.26/vtreat/man/designTreatmentsC.Rd | 8 vtreat-0.5.26/vtreat/man/designTreatmentsN.Rd | 5 vtreat-0.5.26/vtreat/man/getSplitPlanAppLabels.Rd |only vtreat-0.5.26/vtreat/man/kWayCrossValidation.Rd |only vtreat-0.5.26/vtreat/man/kWayStratifiedY.Rd |only vtreat-0.5.26/vtreat/man/linScore.Rd | 7 vtreat-0.5.26/vtreat/man/makekWayCrossValidationGroupedByColumn.Rd |only vtreat-0.5.26/vtreat/man/makekWayCrossValidationOrderedByColumn.Rd |only vtreat-0.5.26/vtreat/man/mkCrossFrameCExperiment.Rd | 7 vtreat-0.5.26/vtreat/man/mkCrossFrameNExperiment.Rd | 6 vtreat-0.5.26/vtreat/man/oneWayHoldout.Rd |only vtreat-0.5.26/vtreat/man/prepare.Rd | 2 vtreat-0.5.26/vtreat/man/problemAppPlan.Rd |only vtreat-0.5.26/vtreat/man/vtreat-package.Rd | 4 vtreat-0.5.26/vtreat/tests/testthat/testBO.R | 34 vtreat-0.5.26/vtreat/tests/testthat/testCar.R | 6 vtreat-0.5.26/vtreat/tests/testthat/testExpmtDesign.R | 74 + vtreat-0.5.26/vtreat/tests/testthat/testScale.R | 3 vtreat-0.5.26/vtreat/tests/testthat/testSig.R |only vtreat-0.5.26/vtreat/tests/testthat/testStability.R | 41 vtreat-0.5.26/vtreat/tests/testthat/testZW.R | 16 vtreat-0.5.26/vtreat/vignettes/vtreat.Rmd | 6 vtreat-0.5.26/vtreat/vignettes/vtreatCrossFrames.Rmd | 60 - vtreat-0.5.26/vtreat/vignettes/vtreatGrouping.Rmd |only vtreat-0.5.26/vtreat/vignettes/vtreatScaleMode.Rmd | 117 ++ vtreat-0.5.26/vtreat/vignettes/vtreatSignificance.Rmd |only vtreat-0.5.26/vtreat/vignettes/vtreatSplitting.Rmd |only vtreat-0.5.26/vtreat/vignettes/vtreatVariableTypes.Rmd | 4 70 files changed, 1684 insertions(+), 630 deletions(-)
Title: Testing of Genotypic Variance Heterogeneity to Detect
Potentially Interacting SNP
Description: Presence of interaction between a SNP and another SNP (or another factor) can result
in heterogeneity of variance between the genotypes of an interacting SNP.
Detecting such heterogeneity gives prior knowledge for constructing a genetic model
underlying complex trait.
Author: Maksim Struchalin
Maintainer: Maksim Struchalin <m.v.struchalin@mail.ru>
Diff between VariABEL versions 0.9-2 dated 2014-01-30 and 0.9-2.1 dated 2016-07-12
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NAMESPACE | 5 +++++ src/iterator_functions.cpp | 2 ++ src/supplementary_functions.h | 6 ++++-- 5 files changed, 21 insertions(+), 11 deletions(-)
Title: Access to Facebook API via R
Description: Provides an interface to the Facebook API.
Author: Pablo Barbera <pbarbera@usc.edu>, Michael Piccirilli
<mrp2181@columbia.edu>, Andrew Geisler
Maintainer: Pablo Barbera <pbarbera@usc.edu>
Diff between Rfacebook versions 0.6.3 dated 2016-03-03 and 0.6.6 dated 2016-07-12
ChangeLog | 9 +++++++ DESCRIPTION | 15 ++++++----- MD5 | 60 +++++++++++++++++++++++++---------------------- NAMESPACE | 4 ++- R/fbOAuth.R | 28 +++++++++++++++++---- R/getFriends.R | 4 +-- R/getGroup.R | 6 +++- R/getInsights.R | 6 +++- R/getPage.R | 27 +++++++++++++++------ R/getReactions.R |only R/getShares.R |only R/searchFacebook.R | 5 ++- R/utils.R | 10 +++++++ man/Rfacebook-package.Rd | 6 ++-- man/callAPI.Rd | 6 ++-- man/fbOAuth.Rd | 27 ++++++++++----------- man/getCheckins.Rd | 5 ++- man/getFQL.Rd | 9 +++---- man/getFriends.Rd | 13 +++++----- man/getGroup.Rd | 10 +++---- man/getInsights.Rd | 25 ++++++++++--------- man/getLikes.Rd | 5 ++- man/getNetwork.Rd | 7 +++-- man/getNewsfeed.Rd | 11 ++++---- man/getPage.Rd | 13 +++++++--- man/getPost.Rd | 19 +++++++------- man/getReactions.Rd |only man/getShares.Rd |only man/getUsers.Rd | 19 +++++++------- man/searchFacebook.Rd | 13 ++++++---- man/searchGroup.Rd | 10 +++---- man/searchPages.Rd | 7 +++-- man/updateStatus.Rd | 9 +++---- 33 files changed, 235 insertions(+), 153 deletions(-)
Title: Predicting Species Accumulation Curves
Description: Estimating the number of species represented r or more times in a random sample.
Author: Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer: Chao Deng <chaodeng@usc.edu>
Diff between preseqR versions 2.0.0 dated 2016-02-02 and 2.0.1 dated 2016-07-12
DESCRIPTION | 8 - MD5 | 22 +- NAMESPACE | 2 R/continued_fraction.R | 81 ++++++---- R/mincount.R | 261 ++++++++++++++++++--------------- R/simulation.R | 25 ++- R/ztnb.R | 124 ++++++++------- README.md | 31 +-- man/preseqR.pf.mincount.bootstrap.Rd | 5 man/preseqR.rfa.species.accum.curve.Rd | 2 man/preseqR.simu.hist.Rd | 8 - src/continued_fraction_c_interface.cpp | 19 ++ 12 files changed, 350 insertions(+), 238 deletions(-)
Title: Estimation Methods for Stochastic Differential Mixed Effects
Models
Description: Inference on stochastic differential models Ornstein-Uhlenbeck or
Cox-Ingersoll-Ross, with one or two random effects in the drift function.
Author: Charlotte Dion [aut, cre],
Adeline Sansom [aut], Simone Hermann [aut]
Maintainer: Charlotte Dion <charlotte.dion1@gmail.com>
Diff between mixedsde versions 1.0 dated 2016-04-22 and 2.0 dated 2016-07-12
DESCRIPTION | 12 MD5 | 102 NAMESPACE | 30 R/BayesianNormal.R | 946 ++-- R/EstParamNormal.R | 209 - R/UV.R | 256 - R/bx.R | 48 R/eigenvaluesV.R | 40 R/likelihoodNormal.R | 202 - R/mixedsde.fit.R | 6478 ++++++++++++++++------------------ R/mixedsde.sim.R | 686 +-- R/mixture.sim.R | 104 R/simu.randomvariable.R | 34 README.md | 20 man/Bayes.fit-class.Rd | 77 man/Bayes.pred-class.Rd | 49 man/BayesianNormal.Rd | 85 man/EstParamNormal.Rd | 63 man/Freq.fit-class.Rd | 101 man/UV.Rd | 77 man/ad.propSd.Rd | 57 man/ad.propSd_random.Rd | 57 man/bx.Rd | 45 man/chain2samples.Rd | 37 man/dcCIR2.Rd | 51 man/diagnostic.Rd | 33 man/discr.Rd | 41 man/eigenvaluesV.Rd | 41 man/likelihoodNormal.Rd | 63 man/likelihoodNormalestimfix.Rd | 67 man/mixedsde-package.Rd | 223 - man/mixedsde.fit.Rd | 641 +-- man/mixedsde.sim.Rd | 269 - man/mixture.sim.Rd | 87 man/neuronal.data.Rd | 194 - man/out.Rd | 35 man/plot-Bayes.fit-ANY-method.Rd | 101 man/plot-Bayes.pred-ANY-method.Rd | 71 man/plot-Freq.fit-ANY-method.Rd | 45 man/plot2compare-Bayes.fit-method.Rd | 63 man/plot2compare-Bayes.pred-method.Rd | 103 man/plot2compare.Rd | 47 man/pred-Bayes.fit-method.Rd | 113 man/pred-Freq.fit-method.Rd | 59 man/pred.Rd | 39 man/print-Bayes.fit-method.Rd | 37 man/print-Freq.fit-method.Rd | 37 man/summary-Bayes.fit-method.Rd | 49 man/summary-Freq.fit-method.Rd | 37 man/valid-Bayes.fit-method.Rd | 63 man/valid-Freq.fit-method.Rd | 63 man/valid.Rd | 43 52 files changed, 6289 insertions(+), 6241 deletions(-)
Title: Linear Mixed Effects Models for QTL Mapping for Multienvironment
and Multitrait Analysis
Description: Performs QTL mapping analysis for balanced and for
multi-environment and multi-trait analysis using mixed models.
Balanced population, single trait, single environment QTL mapping is
performed through marker-regression (Haley and Knott (1992) <DOI:10.1038/hdy.1992.131>,
Martinez and Curnow (1992) <DOI:10.1007/BF00222330>,
while multi-environment and multi-trait QTL
mapping is performed through linear mixed models.
These functions could use any of the following populations: double haploid,
F2, recombinant inbred lines, back-cross, and 4-way crosses.
Performs a Single Marker Analysis, a Single Interval Mapping,
or a Composite Interval Mapping analysis, and then constructs a final model
with all of the relevant QTL.
Author: Lucia Gutierrez [aut],
Gaston Quero [aut, cre],
Schubert Fernandez [aut],
Sofia Brandariz [aut],
Sebastian Simondi [ctb]
Maintainer: Gaston Quero <gastonquero@gmail.com>
Diff between lmem.qtler versions 0.1.0 dated 2016-05-05 and 0.1.1 dated 2016-07-12
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/qtl.cross.R | 2 +- inst/doc/lmem.qtler.html | 4 ++-- man/qtl.analysis.Rd | 11 +++-------- man/qtl.memq.Rd | 2 +- 6 files changed, 15 insertions(+), 20 deletions(-)
Title: Tools for Analysing Forensic Genetic DNA Data
Description: Computationally efficient tools for comparing all pairs of profiles in a DNA database. The expectation and covariance of the summary statistic
is implemented for fast computing. Routines for estimating proportions of close related individuals are available. The use of wildcards (also
called F-designation) is implemented. Dedicated functions ease plotting the results.
Author: Torben Tvedebrink <tvede@math.aau.dk> and James Curran <j.curran@auckland.ac.nz>. Mikkel Meyer Andersen <mikl@math.aau.dk> assisted on the multicore/CPU implementation.
Maintainer: Torben Tvedebrink <tvede@math.aau.dk>
Diff between DNAtools versions 0.1-21 dated 2014-09-03 and 0.1-21.1 dated 2016-07-12
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 14 +++++++++++++- src/mcompare.cpp | 1 + src/profile.cpp | 1 + 5 files changed, 23 insertions(+), 9 deletions(-)
Title: Check, Install and Load CRAN & USGS GRAN Packages
Description: The function `install_load` checks the local R library(ies) to see
if the required package(s) is/are installed or not. If the package(s)
is/are not installed, then the package(s) will be installed along with
the required dependency(ies). This function pulls source or
binary packages from the Rstudio-sponsored CRAN mirror and/or
the USGS GRAN Repository. Lastly, the chosen package(s)
is/are loaded. The function `load_package` simply loads the provided
packages.
Author: maloneypatr [aut, cre] (Author of original install_load function, see
http://stackoverflow.com/questions/15155814/check-if-r-package-is-installed-then-load-library),
Irucka Embry [aut, ctb]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between install.load versions 1.1.1 dated 2016-06-13 and 1.2.1 dated 2016-07-12
DESCRIPTION | 19 ++++++++++--------- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ R/install_load.R | 9 ++++++--- R/load_package.R | 27 +++++++++++++++------------ README.md | 4 ++-- man/install_load.Rd | 5 ++++- man/load_package.Rd | 17 ++++++++++------- 8 files changed, 61 insertions(+), 41 deletions(-)
Title: Miscellaneous Helper Functions for B. Bischl
Description: Miscellaneous helper functions for and from B. Bischl and
some other guys at TU Dortmund, mainly for package development.
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Jakob Bossek [aut],
Daniel Horn [aut],
Jakob Richter [aut],
Dirk Surmann [aut]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Diff between BBmisc versions 1.9 dated 2015-02-03 and 1.10 dated 2016-07-12
DESCRIPTION | 17 +- LICENSE | 2 MD5 | 215 ++++++++++++++++---------------- NAMESPACE | 5 NEWS | 3 R/capitalizeStrings.R |only R/makeSimpleFileLogger.R | 2 R/normalize.R | 4 R/requirePackages.R | 39 +++++ R/zzz.R | 2 man/addClasses.Rd | 2 man/argsAsNamedList.Rd | 2 man/asMatrixCols.Rd | 2 man/asQuoted.Rd | 2 man/binPack.Rd | 2 man/btwn.Rd | 2 man/cFactor.Rd | 2 man/capitalizeStrings.Rd |only man/catf.Rd | 2 man/checkArg.Rd | 2 man/checkListElementClass.Rd | 2 man/chunk.Rd | 2 man/clipString.Rd | 2 man/coalesce.Rd | 2 man/collapse.Rd | 2 man/collapsef.Rd | 2 man/computeMode.Rd | 2 man/convertDataFrameCols.Rd | 2 man/convertInteger.Rd | 2 man/convertIntegers.Rd | 2 man/convertListOfRowsToDataFrame.Rd | 2 man/convertMatrixType.Rd | 2 man/convertRowsToList.Rd | 2 man/convertToShortString.Rd | 2 man/dapply.Rd | 2 man/deprecated.Rd | 2 man/do.call2.Rd | 2 man/dropNamed.Rd | 2 man/ensureVector.Rd | 2 man/explode.Rd | 2 man/extractSubList.Rd | 2 man/filterNull.Rd | 2 man/getAttributeNames.Rd | 2 man/getClass1.Rd | 2 man/getFirst.Rd | 2 man/getMaxIndex.Rd | 2 man/getMaxIndexOfRows.Rd | 2 man/getOperatingSystem.Rd | 2 man/getRelativePath.Rd | 2 man/getUnixTime.Rd | 2 man/getUsedFactorLevels.Rd | 2 man/hasAttributes.Rd | 2 man/insert.Rd | 2 man/is.error.Rd | 2 man/isDirectory.Rd | 2 man/isEmptyDirectory.Rd | 2 man/isExpensiveExampleOk.Rd | 2 man/isFALSE.Rd | 2 man/isProperlyNamed.Rd | 2 man/isScalarNA.Rd | 2 man/isScalarValue.Rd | 2 man/isSubset.Rd | 2 man/isSuperset.Rd | 2 man/isValidName.Rd | 2 man/itostr.Rd | 2 man/lib.Rd | 2 man/load2.Rd | 2 man/lsort.Rd | 2 man/makeDataFrame.Rd | 2 man/makeFileCache.Rd | 2 man/makeProgressBar.Rd | 2 man/makeS3Obj.Rd | 2 man/makeSimpleFileLogger.Rd | 2 man/mapValues.Rd | 2 man/messagef.Rd | 2 man/namedList.Rd | 2 man/names2.Rd | 2 man/nin.Rd | 2 man/normalize.Rd | 4 man/optimizeSubInts.Rd | 2 man/pause.Rd | 2 man/printStrToChar.Rd | 2 man/printToChar.Rd | 2 man/rangeVal.Rd | 2 man/requirePackages.Rd | 15 +- man/rowLapply.Rd | 4 man/save2.Rd | 2 man/seq_row.Rd | 2 man/setAttribute.Rd | 2 man/setClasses.Rd | 2 man/setRowNames.Rd | 2 man/setValue.Rd | 2 man/sortByCol.Rd | 2 man/splitPath.Rd | 2 man/splitTime.Rd | 2 man/stopf.Rd | 2 man/strrepeat.Rd | 2 man/suppressAll.Rd | 4 man/symdiff.Rd | 2 man/system3.Rd | 2 man/toRangeStr.Rd | 2 man/vlapply.Rd | 2 man/warningf.Rd | 2 man/which.first.Rd | 4 tests/testthat/test_capitalizeStrings.R |only tests/testthat/test_makeProgressBar.R | 4 tests/testthat/test_normalize.R | 2 tests/testthat/test_printf.R | 2 tests/testthat/test_requirePackages.R | 10 + tests/testthat/test_suppressAll.R | 17 +- 110 files changed, 297 insertions(+), 234 deletions(-)
Title: Bayesian Network Feature Finder
Description: Provides a full package of posterior inference, model comparison, and graphical illustration of model fitting. A parallel computing algorithm for the Markov chain Monte Carlo (MCMC) based posterior inference and an Expectation-Maximization (EM) based algorithm for posterior approximation are are developed, both of which greatly reduce the computational time for model inference.
Author: Zhou Lan, Yize Zhao, Jian Kang, Tianwei Yu
Maintainer: Zhou Lan <zlan6@gatech.edu>
Diff between BANFF versions 1.0 dated 2015-10-12 and 1.1 dated 2016-07-12
DESCRIPTION | 6 ++-- MD5 | 4 +-- R/Generating_Zi.R | 72 +++++++++++++++++++++++++++--------------------------- 3 files changed, 41 insertions(+), 41 deletions(-)