Title: Retrieve Genomic and Clinical Data from TCGA
Description: The Cancer Genome Atlas (TCGA) is a program aimed at improving our understanding of Cancer Biology. Several TCGA Datasets are available online. 'TCGAretriever' helps accessing and downloading TCGA data hosted on 'cBioPortal' via its Web Interface (see <http://www.cbioportal.org/web_api.jsp> for more information). Features of 'TCGAretriever' include: 1) it is very simple to use (get all the TCGA data you need with a few lines of code); 2) performance (smooth and reliable data download via 'httr'); 3) it is tailored for downloading large volumes of data.
Author: Damiano Fantini
Maintainer: Damiano Fantini <damiano.fantini@gmail.com>
Diff between TCGAretriever versions 1.1 dated 2016-07-13 and 1.3 dated 2016-07-30
DESCRIPTION | 10 - MD5 | 28 ++--- R/TCGAretriever-internal.R | 251 ++++++++++++++++++++++----------------------- R/fetch_all_tcgadata.R | 27 ++-- R/get_ext_mutation.R | 1 R/get_protein_data.R | 2 R/get_protein_info.R | 2 R/make_groups.R |only R/trim_rnaseq_tcgadata.R | 1 man/get_cancer_studies.Rd | 4 man/get_case_lists.Rd | 2 man/get_clinical_data.Rd | 2 man/get_ext_mutation.Rd | 5 man/get_protein_data.Rd | 14 ++ man/get_protein_info.Rd | 16 ++ man/make_groups.Rd |only 16 files changed, 202 insertions(+), 163 deletions(-)
Title: Linear Regression by Gibbs Sampling
Description: Implements a Gibbs sampler to do linear regression with multiple covariates, multiple responses, Gaussian measurement errors on covariates and responses, Gaussian intrinsic scatter, and a covariate prior distribution which is given by either a Gaussian mixture of specified size or a Dirichlet process with a Gaussian base distribution.
Author: Adam Mantz
Maintainer: Adam Mantz <amantz@slac.stanford.edu>
Diff between lrgs versions 0.4.2 dated 2015-09-05 and 0.5.1 dated 2016-07-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/lrgs.R | 30 +++++++++++++++--------------- man/Gibbs.regression.Rd | 15 ++++++++------- man/lrgs-package.Rd | 4 ++-- 5 files changed, 33 insertions(+), 32 deletions(-)
Title: Mini Games from Adventures of Beta and Bit
Description: Three games: proton, frequon and regression. Each one is a console-based data-crunching game for younger and older data scientists.
Act as a data-hacker and find Slawomir Pietraszko's credentials to the Proton server.
In proton you have to solve four data-based puzzles to find the login and password.
There are many ways to solve these puzzles. You may use loops, data filtering, ordering, aggregation or other tools.
Only basics knowledge of R is required to play the game, yet the more functions you know, the more approaches you can try.
In frequon you will help to perform statistical cryptanalytic attack on a corpus of ciphered messages.
This time seven sub-tasks are pushing the bar much higher. Do you accept the challenge?
In regression you will test your modeling skills in a series of eight sub-tasks.
Try only if ANOVA is your close friend.
It's a part of Beta and Bit project.
You will find more about the Beta and Bit project at <http://betabit.wiki>.
Author: Przemyslaw Biecek [aut, cre],
Witold Chodor [trl],
Katarzyna Fak [aut],
Tomasz Zoltak [aut],
Foundation SmarterPoland.pl [cph]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between BetaBit versions 1.2.2 dated 2016-06-01 and 1.3 dated 2016-07-30
DESCRIPTION | 30 ++++++++++++++++++------------ MD5 | 26 ++++++++++++++++++-------- NAMESPACE | 4 ++++ R/FSW.R |only R/dataFSW.R |only R/frequon.R | 45 ++++++++++++++++++++++++++++++++------------- R/proton.R | 13 +------------ R/regression.R |only R/sysdata.rda |only R/varLabels.R |only R/zzz.R | 44 +------------------------------------------- README.md | 8 +++++++- data/daneEdu.rda |only data/datalist | 1 + man/FSW.Rd |only man/dataFSW.Rd |only man/frequon.Rd | 6 ++++-- man/regression.Rd |only man/varLabels.Rd |only 19 files changed, 86 insertions(+), 91 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics and Models
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial autocorrelation,
including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross
product statistic, Empirical Bayes estimates and Assunção/Reis Index,
Getis/Ord G and multicoloured join count statistics, local Moran's I
and Getis/Ord G, saddlepoint approximations and exact tests for global
and local Moran's I; and functions for estimating spatial simultaneous
autoregressive (SAR) lag and error models, impact measures for lag
models, weighted and unweighted SAR and CAR spatial regression models,
semi-parametric and Moran eigenvector spatial filtering, GM SAR error
models, and generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut],
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assunção [ctb],
Olaf Berke [ctb],
Andrew Bernat [ctb],
Guillaume Blanchet [ctb],
Eric Blankmeyer [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Stéphane Dray [ctb],
Virgilio Gómez-Rubio [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
Elias Krainski [ctb],
Pierre Legendre [ctb],
Nicholas Lewin-Koh [ctb],
Hongfei Li [ctb],
Jielai Ma [ctb],
Abhirup Mallik [ctb, trl],
Giovanni Millo [ctb],
Werner Mueller [ctb],
Hisaji Ono [ctb],
Pedro Peres-Neto [ctb],
Gianfranco Piras [ctb],
Markus Reder [ctb],
Michael Tiefelsdorf [ctb],
Danlin Yu [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 0.6-5 dated 2016-06-02 and 0.6-6 dated 2016-07-30
ChangeLog | 29 ++++++++++++ DESCRIPTION | 10 ++-- MD5 | 45 ++++++++++--------- NAMESPACE | 16 ++++++- R/error.spsarlm.R | 31 +++++++++++++ R/impacts.R | 95 +++++++++++++++++++++++++++++++++++++++++- R/jacobian.R | 2 R/lag.spsarlm.R | 1 R/lm.LMtests.R | 10 ++-- R/sarlm.R | 50 +++++++++++----------- R/spBreg.R |only build/vignette.rds |binary data/datalist | 2 data/elect80.rda |binary inst/ChangeLog | 29 ++++++++++++ inst/doc/CO69.pdf |binary inst/doc/SpatialFiltering.pdf |binary inst/doc/nb.pdf |binary inst/doc/nb_igraph.html | 4 - inst/doc/sids.pdf |binary man/errorsarlm.Rd | 11 ++-- man/impacts.sarlm.Rd | 20 +++++++- man/lagsarlm.Rd | 53 +++++++++++++++++++++-- man/predict.sarlm.Rd | 15 ++++++ 24 files changed, 347 insertions(+), 76 deletions(-)
Title: Estimation and Statistical Process Control Under Copula-Based
Time Series Models
Description: Estimation and statistical process control are performed under copula-based time-series models.
Author: Takeshi Emura and Ting-Hsuan Long
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between Copula.Markov versions 1.0 dated 2015-03-23 and 1.1 dated 2016-07-30
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 3 +++ R/Clayton.Markov.MLE.R | 19 +++++++++++++++++-- R/Joe.Markov.MLE.R | 17 +++++++++++++++-- man/Clayton.Markov.DATA.Rd | 4 ++-- man/Clayton.Markov.MLE.Rd | 13 ++++++++----- man/Copula.Markov-package.Rd | 10 +++++----- man/Joe.Markov.DATA.Rd | 8 +++----- man/Joe.Markov.MLE.Rd | 11 +++++++---- 10 files changed, 74 insertions(+), 39 deletions(-)
Title: Roll Call Analysis Software
Description: Estimates Poole and Rosenthal W-NOMINATE scores from roll
call votes supplied though a 'rollcall' object from package
'pscl'.
Author: Keith Poole <ktpoole@uga.edu>, Jeffrey Lewis
<jblewis@ucla.edu>, James Lo <lojames@usc.edu> and Royce
Carroll <rcarroll@rice.edu>
Maintainer: James Lo <lojames@usc.edu>
Diff between wnominate versions 0.99 dated 2014-09-23 and 1.2 dated 2016-07-30
ChangeLog | 9 ++++++--- DESCRIPTION | 14 +++++++------- MD5 | 33 +++++++++++++++++---------------- NAMESPACE | 13 ++++++++++++- build |only man/UN.Rd | 9 +++++---- man/generateTestData.Rd | 2 +- man/nomprob.Rd | 2 +- man/plot.angles.Rd | 2 +- man/plot.coords.Rd | 2 +- man/plot.cutlines.Rd | 2 +- man/plot.nomObject.Rd | 2 +- man/plot.scree.Rd | 2 +- man/qnprob.Rd | 2 +- man/sen90.Rd | 10 ++++++---- man/sen90wnom.Rd | 14 +++++++++----- man/summary.nomObject.Rd | 2 +- man/wnominate.Rd | 14 +++++++------- 18 files changed, 78 insertions(+), 56 deletions(-)
Title: Tools for Manipulating and Summarizing CMIP5 Data
Description: Working with CMIP5 data can be tricky, forcing scientists to write
custom scripts and programs. The `RCMIP5` package aims to ease this
process, providing a standard, robust, and high-performance set of scripts
to (i) explore what data have been downloaded, (ii) identify missing data,
(iii) average (or apply other mathematical operations) across experimental
ensembles, (iv) produce both temporal and spatial statistical summaries,
and (v) produce easy-to-work-with graphical and data summaries.
Author: Ben Bond-Lamberty [aut],
Kathe Todd-Brown [aut, cre]
Maintainer: Kathe Todd-Brown <ktoddbrown@gmail.com>
Diff between RCMIP5 versions 1.1 dated 2014-11-24 and 1.2.0 dated 2016-07-30
RCMIP5-1.1/RCMIP5/man/weighted.sum.Rd |only RCMIP5-1.2.0/RCMIP5/DESCRIPTION | 17 RCMIP5-1.2.0/RCMIP5/MD5 | 150 +++--- RCMIP5-1.2.0/RCMIP5/NAMESPACE | 16 RCMIP5-1.2.0/RCMIP5/NEWS | 21 RCMIP5-1.2.0/RCMIP5/R/RCMIP5.R | 203 ++++++-- RCMIP5-1.2.0/RCMIP5/R/addProvenance.R | 6 RCMIP5-1.2.0/RCMIP5/R/calcGridArea.R | 58 +- RCMIP5-1.2.0/RCMIP5/R/checkTimePeriod.R | 10 RCMIP5-1.2.0/RCMIP5/R/filterDimensions.R | 217 +++++---- RCMIP5-1.2.0/RCMIP5/R/getFileInfo.R | 9 RCMIP5-1.2.0/RCMIP5/R/loadCMIP5.R | 121 +++-- RCMIP5-1.2.0/RCMIP5/R/loadEnsemble.R | 141 +++--- RCMIP5-1.2.0/RCMIP5/R/makeAnnualStat.R | 139 ++++-- RCMIP5-1.2.0/RCMIP5/R/makeGlobalStat.R | 113 ++-- RCMIP5-1.2.0/RCMIP5/R/makeMonthlyStat.R | 108 +++- RCMIP5-1.2.0/RCMIP5/R/makeZStat.R | 51 +- RCMIP5-1.2.0/RCMIP5/R/mergeExperiments.R | 32 - RCMIP5-1.2.0/RCMIP5/R/regrid.R | 256 +++++++++-- RCMIP5-1.2.0/RCMIP5/R/saveNetCDF.R | 74 +-- RCMIP5-1.2.0/RCMIP5/R/worldPlot.R | 16 RCMIP5-1.2.0/RCMIP5/README.md | 21 RCMIP5-1.2.0/RCMIP5/build/vignette.rds |binary RCMIP5-1.2.0/RCMIP5/demo/RCMIP5.R | 27 - RCMIP5-1.2.0/RCMIP5/inst/doc/atmospheric_co2.R | 8 RCMIP5-1.2.0/RCMIP5/inst/doc/atmospheric_co2.Rmd | 39 + RCMIP5-1.2.0/RCMIP5/inst/doc/atmospheric_co2.html | 50 +- RCMIP5-1.2.0/RCMIP5/man/RCMIP5.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/addProvenance.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/as.array.cmip5data.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/as.data.frame.cmip5data.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/calcGridArea.Rd | 7 RCMIP5-1.2.0/RCMIP5/man/checkTimePeriod.Rd | 5 RCMIP5-1.2.0/RCMIP5/man/cmip5.weighted.mean.Rd |only RCMIP5-1.2.0/RCMIP5/man/cmip5data.Rd | 10 RCMIP5-1.2.0/RCMIP5/man/convert_array_to_df.Rd |only RCMIP5-1.2.0/RCMIP5/man/filterDimensionLat.Rd | 7 RCMIP5-1.2.0/RCMIP5/man/filterDimensionLon.Rd | 7 RCMIP5-1.2.0/RCMIP5/man/filterDimensionTimeMonths.Rd | 7 RCMIP5-1.2.0/RCMIP5/man/filterDimensionTimeYears.Rd | 7 RCMIP5-1.2.0/RCMIP5/man/filterDimensionZ.Rd | 7 RCMIP5-1.2.0/RCMIP5/man/filterDimensions.Rd | 28 - RCMIP5-1.2.0/RCMIP5/man/getFileInfo.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/getProjectionMatrix.Rd |only RCMIP5-1.2.0/RCMIP5/man/loadCMIP5.Rd | 11 RCMIP5-1.2.0/RCMIP5/man/loadEnsemble.Rd | 9 RCMIP5-1.2.0/RCMIP5/man/makeAnnualStat.Rd | 15 RCMIP5-1.2.0/RCMIP5/man/makeGlobalStat.Rd | 31 - RCMIP5-1.2.0/RCMIP5/man/makeMonthlyStat.Rd | 15 RCMIP5-1.2.0/RCMIP5/man/makePackageData.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/makeZStat.Rd | 11 RCMIP5-1.2.0/RCMIP5/man/mergeExperiments.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/nvals.Rd |only RCMIP5-1.2.0/RCMIP5/man/print.cmip5data.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/print.summary.cmip5data.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/regrid.Rd |only RCMIP5-1.2.0/RCMIP5/man/restoreMissingDims.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/saveNetCDF.Rd | 23 - RCMIP5-1.2.0/RCMIP5/man/summary.cmip5data.Rd | 3 RCMIP5-1.2.0/RCMIP5/man/vals.Rd |only RCMIP5-1.2.0/RCMIP5/man/worldPlot.Rd | 7 RCMIP5-1.2.0/RCMIP5/tests/testthat/test_RCMIP5.R | 128 +++-- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_addProvenance.R | 34 - RCMIP5-1.2.0/RCMIP5/tests/testthat/test_calcGridArea.R |only RCMIP5-1.2.0/RCMIP5/tests/testthat/test_chainedOperations.R | 234 +++++----- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_checkTimePeriod.R | 2 RCMIP5-1.2.0/RCMIP5/tests/testthat/test_cmip5data.R | 185 +++++--- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_filterDimensions.R | 272 ++++++++---- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_getFileInfo.R | 9 RCMIP5-1.2.0/RCMIP5/tests/testthat/test_loadCMIP5.R | 171 ++++--- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_loadEnsemble.R | 81 +-- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_makeAnnualStat.R | 214 +++++---- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_makeGlobalStat.R | 197 +++++--- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_makeMonthlyStat.R | 126 +++-- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_makeZStat.R | 94 ++-- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_mergeExperiments.R | 202 ++++---- RCMIP5-1.2.0/RCMIP5/tests/testthat/test_regrid.R |only RCMIP5-1.2.0/RCMIP5/tests/testthat/test_saveNetCDF.R | 36 - RCMIP5-1.2.0/RCMIP5/tests/testthat/test_worldPlot.R |only RCMIP5-1.2.0/RCMIP5/tests/testthat/testdata_overlap |only RCMIP5-1.2.0/RCMIP5/vignettes/atmospheric_co2.Rmd | 39 + 81 files changed, 2643 insertions(+), 1524 deletions(-)
Title: Penalized Generalized Estimating Equations in High-Dimension
Description: Fits penalized generalized estimating equations to longitudinal data with high-dimensional covariates.
Author: Gul Inan (Visiting scholar, University of Minnesota), Jianhui Zhou (Associate Professor, University of Virginia) and Lan Wang (Professor, University of Minnesota)
Maintainer: Gul Inan <inanx002@umn.edu>
Diff between PGEE versions 1.2 dated 2016-05-13 and 1.3 dated 2016-07-30
PGEE-1.2/PGEE/R/MGee.R |only PGEE-1.2/PGEE/R/PGee.R |only PGEE-1.2/PGEE/R/print.MGee.R |only PGEE-1.2/PGEE/R/print.PGee.R |only PGEE-1.2/PGEE/R/print.summary.MGee.R |only PGEE-1.2/PGEE/R/print.summary.PGee.R |only PGEE-1.2/PGEE/R/summary.MGee.R |only PGEE-1.2/PGEE/R/summary.PGee.R |only PGEE-1.2/PGEE/man/MGee.Rd |only PGEE-1.2/PGEE/man/PGee.Rd |only PGEE-1.3/PGEE/DESCRIPTION | 8 ++++---- PGEE-1.3/PGEE/MD5 | 32 +++++++++++++++++--------------- PGEE-1.3/PGEE/NAMESPACE | 9 +++++++++ PGEE-1.3/PGEE/R/CVfit.R | 21 +++++++++++++-------- PGEE-1.3/PGEE/R/MGEE.R |only PGEE-1.3/PGEE/R/PGEE.R |only PGEE-1.3/PGEE/R/print.MGEE.R |only PGEE-1.3/PGEE/R/print.PGEE.R |only PGEE-1.3/PGEE/R/print.summary.MGEE.R |only PGEE-1.3/PGEE/R/print.summary.PGEE.R |only PGEE-1.3/PGEE/R/summary.MGEE.R |only PGEE-1.3/PGEE/R/summary.PGEE.R |only PGEE-1.3/PGEE/data |only PGEE-1.3/PGEE/man/CVfit.Rd | 6 +++--- PGEE-1.3/PGEE/man/MGEE.Rd |only PGEE-1.3/PGEE/man/PGEE-package.Rd | 8 ++++---- PGEE-1.3/PGEE/man/PGEE.Rd |only PGEE-1.3/PGEE/man/yeastG1.Rd |only 28 files changed, 50 insertions(+), 34 deletions(-)
Title: R Functions to Perform and Display Google Trends Queries
Description: An interface for retrieving and displaying the information returned
online by Google Trends is provided. Trends (number of hits) over the time as
well as geographic representation of the results can be displayed.
Author: Philippe Massicotte [aut, cre],
Dirk Eddelbuettel [aut]
Maintainer: Philippe Massicotte <pmassicotte@hotmail.com>
Diff between gtrendsR versions 1.3.3 dated 2016-03-08 and 1.3.4 dated 2016-07-30
DESCRIPTION | 10 MD5 | 24 - NAMESPACE | 33 - NEWS.md | 76 +-- R/countries.R | 32 - R/gtrends.R | 1169 ++++++++++++++++++++++++++--------------------------- R/init.R | 32 - R/sport_trend.R | 64 +- README.md | 122 ++--- man/countries.Rd | 46 +- man/gconnect.Rd | 116 ++--- man/gtrends.Rd | 239 +++++----- man/sport_trend.Rd | 84 +-- 13 files changed, 1023 insertions(+), 1024 deletions(-)
Title: Fuzzy Stationary Probabilities from a Sequence of Observations
of an Unknown Markov Chain
Description: An implementation of a method for computing fuzzy numbers representing stationary probabilities of an unknown Markov chain,
from which a sequence of observations along time has been obtained. The algorithm is based on the proposal presented by James Buckley
in his book on Fuzzy probabilities (Springer, 2005), chapter 6. Package 'FuzzyNumbers' is used to represent the output probabilities.
Author: Author: Pablo J. Villacorta <pjvi@decsai.ugr.es>
Maintainer: Pablo J. Villacorta <pjvi@decsai.ugr.es>
Diff between FuzzyStatProb versions 2.0.1 dated 2015-06-15 and 2.0.2 dated 2016-07-30
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- NAMESPACE | 2 ++ build/vignette.rds |binary inst/CITATION |only man/fuzzyStationaryProb.Rd | 8 ++++++-- 6 files changed, 18 insertions(+), 11 deletions(-)
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical
measures, which otherwise could only be calculated with additional
effort (like standard errors or root mean squared errors). Second,
these shortcut functions are generic (if appropriate), and can be
applied not only to vectors, but also to other objects as well
(e.g., the Coefficient of Variation can be computed for vectors,
linear models, or linear mixed models; the r2()-function returns
the r-squared value for 'lm', 'glm', 'merMod' or 'lme' objects).
The focus of most functions lies on summary statistics or fit
measures for regression models, including generalized linear
models and mixed effects models. However, some of the functions
also deal with other statistical measures, like Cronbach's Alpha,
Cramer's V, Phi etc.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjstats versions 0.2.0 dated 2016-06-20 and 0.3.0 dated 2016-07-30
DESCRIPTION | 13 +-- MD5 | 34 ++++---- NAMESPACE | 9 ++ NEWS | 44 ++++++---- NEWS.md | 28 +++--- R/boot_ci.R |only R/bootstrap.R |only R/cv.R | 206 +++++++++++++++++++++++-------------------------- R/mwu.R | 4 R/overdisp.R | 5 - R/pred_vars.R |only R/pseudo_r2.R | 11 -- R/rmse.R | 6 - R/se.R | 168 +++++++++++++++++++-------------------- R/std_b.R | 5 - build/partial.rdb |binary man/boot_ci.Rd |only man/bootstrap.Rd |only man/pred_vars.Rd |only man/r2.Rd | 4 man/sjstats-package.Rd | 74 ++++++++--------- 21 files changed, 301 insertions(+), 310 deletions(-)
Title: R Bindings for Selenium WebDriver
Description: The RSelenium package provides a set of R bindings for the
Selenium 2.0 WebDriver using the JsonWireProtocol. Selenium automates web
browsers (commonly referred to as browsers). Using RSelenium you can
automate browsers locally or remotely.
Author: John Harrison <johndharrison0@gmail.com>
Maintainer: John Harrison <johndharrison0@gmail.com>
Diff between RSelenium versions 1.3.5 dated 2014-10-26 and 1.4.0 dated 2016-07-30
DESCRIPTION | 15 MD5 | 66 +-- NAMESPACE | 9 NEWS | 18 - R/errorHandler.R | 5 R/remoteDriver.R | 6 R/util.R | 91 ++++- build/vignette.rds |binary inst/doc/OCRUG-webinar.R | 4 inst/doc/OCRUG-webinar.html | 97 +++-- inst/doc/RSelenium-basics.R | 4 inst/doc/RSelenium-basics.Rmd | 4 inst/doc/RSelenium-basics.html | 648 +++++++++++++++----------------------- inst/doc/RSelenium-headless.R | 4 inst/doc/RSelenium-headless.html | 97 +++-- inst/doc/RSelenium-saucelabs.R | 4 inst/doc/RSelenium-saucelabs.Rmd | 4 inst/doc/RSelenium-saucelabs.html | 101 +++-- inst/doc/shinytesting.R | 4 inst/doc/shinytesting.Rmd | 3 inst/doc/shinytesting.html | 100 +++-- man/checkForServer.Rd | 3 man/errorHandler-class.Rd | 7 man/getChromeProfile.Rd | 3 man/getFirefoxProfile.Rd | 3 man/makeFirefoxProfile.Rd | 5 man/phantom.Rd | 5 man/remoteDriver-class.Rd | 14 man/selKeys.Rd | 3 man/startServer.Rd | 25 - man/webElement-class.Rd | 7 vignettes/RSelenium-basics.Rmd | 4 vignettes/RSelenium-saucelabs.Rmd | 4 vignettes/shinytesting.Rmd | 3 34 files changed, 686 insertions(+), 684 deletions(-)
Title: Yet Another Package for Qualitative Comparative Analysis
Description: A set of functions for Qualitative Comparative Analysis (QCA). It can be used for various types of QCA (csQCA, mvQCA fsQCA and crisp set TQCA and time-serious QCA). It has methods for simplifying assumption, contradictory simplifying assumption.
Author: Ronggui HUANG
Maintainer: Ronggui HUANG<ronggui.huang@gmail.com>
Diff between QCA3 versions 0.0-7 dated 2014-04-27 and 0.0-8 dated 2016-07-30
DESCRIPTION | 12 LICENSE | 4 MD5 | 124 +- NAMESPACE | 71 - R/QCA.R | 2018 +++++++++++++++++++++++----------------------- R/QCA.methods.R | 356 ++++---- R/bestSubsets.R | 56 - R/calibration.R | 62 - R/coincid.R | 94 +- R/experimental.R | 132 +-- R/fsgof.R | 260 ++--- R/inclusion.R | 78 - R/plots.R | 114 +- R/remainders.R | 86 + R/suffnec.R | 344 +++---- R/truthTable.R | 758 ++++++++--------- R/tsQCA.R | 146 +-- R/utils.R | 24 build/vignette.rds |binary inst/CITATION | 34 inst/ChangeLog | 432 ++++----- inst/Profiling.R | 54 - inst/TODO | 34 inst/doc/QCA3.Rnw | 512 +++++------ inst/doc/QCA3.pdf |binary man/CarenPanofsky.Rd | 78 - man/CoD.Rd | 178 ++-- man/CressSnow.rd | 88 +- man/GiugniYamasaki2009.Rd | 108 +- man/HIVChange.rd | 122 +- man/Hino2009.Rd | 82 - man/HuangGui2009.Rd | 98 +- man/KatzHauMahoney.Rd | 98 +- man/Lipsets.rd | 112 +- man/McCammonVanDyke.Rd | 88 +- man/QCA.Notation.Rd | 42 man/QCA.methods.rd | 140 +-- man/SA.rd | 170 +-- man/Stokke.Rd | 56 - man/Yamasaki2009.Rd | 80 - man/boolIntersect.Rd | 58 - man/coincid.Rd | 88 +- man/consistGap.Rd | 84 - man/constrReduce.rd | 224 ++--- man/coverage.Rd | 196 ++-- man/cs_truthTable.rd | 244 ++--- man/directCalibration.Rd | 108 +- man/fs_truthTable.rd | 162 +-- man/fsnot.Rd | 76 - man/fsplot.Rd | 120 +- man/implicantsToDF.Rd | 64 - man/mv_truthTable.rd | 122 +- man/reduce.rd | 414 ++++----- man/remainderReduce.Rd | 61 - man/setOUT.Rd | 70 - man/suffnec.Rd | 98 +- man/thresholdssetter.rd | 112 +- tests/dontcare.R | 36 tests/dontcare.Rout | 128 +- tests/textBook.R | 116 +- tests/textBook.Rout | 444 +++++----- vignettes/QCA3.Rnw | 512 +++++------ vignettes/QCA3.bib | 56 - 63 files changed, 5496 insertions(+), 5442 deletions(-)
Title: The Observatory of Economic Complexity
Description: Use The Observatory of Economic Complexity's API from R console to obtain international trade data to create spreadsheets (csv format) and D3Plus visualizations.
Author: Mauricio Vargas S. <mauriciovargas@ug.uchile.cl>
Maintainer: Mauricio Vargas S. <mauriciovargas@ug.uchile.cl>
Diff between oec versions 1.0.2 dated 2016-07-27 and 1.0.3 dated 2016-07-30
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- data/countries_list.RData |binary data/hs92_2char.RData |binary data/hs92_6char.RData |binary data/hs92_8char.RData |binary data/hs_colors.RData |binary data/sitc_colors.RData |binary data/sitc_rev2_2char.RData |binary data/sitc_rev2_4char.RData |binary man/countries_list.Rd | 2 +- 11 files changed, 15 insertions(+), 15 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments.
Author: Fred Viole
Maintainer: Fred Viole <viole.nawrocki@gmail.com>
Diff between NNS versions 0.1.9.2 dated 2016-06-14 and 0.1.9.4 dated 2016-07-30
DESCRIPTION | 8 MD5 | 100 +++--- R/ANOVA.R | 2 R/ARMA.R | 2 R/ARMA_Regression.R | 2 R/Binary_ANOVA.R | 6 R/Causation.R | 2 R/Classifier.R | 6 R/Co_PM_cor.R | 2 R/Correlation.R | 2 R/Dependence.R | 2 R/FSD.R | 2 R/Feature_probability.R | 8 R/Normalization.R | 2 R/Partial_Moments.R | 12 R/Partition_Map.R | 2 R/Regression.R | 682 ++++++++++++++++++++++----------------------- R/SD_Efficient_Set.R | 2 R/SSD.R | 2 R/Seasonality_Test.R | 2 R/TSD.R | 2 R/Uni_SD_Routines.R | 6 man/Co.LPM.Rd | 2 man/Co.PM.cor.Rd | 2 man/Co.UPM.Rd | 2 man/D.LPM.Rd | 2 man/D.UPM.Rd | 2 man/FSD.Rd | 2 man/Feature.probability.Rd | 6 man/LPM.Rd | 2 man/LPM.VaR.Rd | 2 man/TSD.Rd | 2 man/UPM.Rd | 2 man/UPM.VaR.Rd | 2 man/Uni.caus.Rd | 2 man/VN.ANOVA.Rd | 2 man/VN.ANOVA.bin.Rd | 2 man/VN.ARMA.Rd | 2 man/VN.ARMA.reg.Rd | 2 man/VN.FSD.Rd | 2 man/VN.SD.Efficient.Set.Rd | 2 man/VN.SSD.Rd | 2 man/VN.SSD.uni.Rd | 2 man/VN.TSD.Rd | 2 man/VN.class.Rd | 6 man/VN.cor.Rd | 2 man/VN.dep.Rd | 2 man/VN.norm.Rd | 2 man/VN.reg.Rd | 10 man/VN.seas.Rd | 2 man/partition.map.Rd | 2 51 files changed, 460 insertions(+), 470 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Provides new statistics to locate and tag peaks and valleys in 2D
plots, a statistics to add a label with the equation of a polynomial fitted
with lm(), or R^2 or adjusted R^2 or information criteria for any model
fitted with function lm(). Additional statistics give access to functions
in package 'broom'. Provides a function for flexibly converting time
series to data frames suitable for plotting with ggplot(). In addition
provides two statistics and two geometries useful for diagnosing what data
are passed to compute_group() and compute_panel() functions and to
geometries.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.2.9 dated 2016-06-18 and 0.2.10 dated 2016-07-30
DESCRIPTION | 21 +- MD5 | 54 +++--- NAMESPACE | 1 NEWS | 10 + R/geom-debug.R | 4 R/stat-debug-group.R | 2 R/stat-debug-panel.R | 2 R/stat-fit-broom.R | 2 R/stat-fit-deviations.R | 2 R/stat-fit-residuals.R | 4 R/stat-peaks.R | 12 - R/stat-poly-eq.R | 37 +++- R/try-data-frame.R | 20 +- README.md | 24 +- build/vignette.rds |binary inst/CITATION |only inst/doc/examples.html | 374 ++++++++++++++++++++++----------------------- inst/staticdocs |only man/find_peaks.Rd | 6 man/geom_debug.Rd | 2 man/geom_null.Rd | 2 man/stat_debug_group.Rd | 2 man/stat_debug_panel.Rd | 2 man/stat_fit_deviations.Rd | 2 man/stat_fit_glance.Rd | 2 man/stat_fit_residuals.Rd | 4 man/stat_peaks.Rd | 6 man/stat_poly_eq.Rd | 33 +++ man/try_data_frame.Rd | 13 + 29 files changed, 356 insertions(+), 287 deletions(-)