Title: Immunoglobulin Somatic Hypermutation Analysis
Description: Provides a computational framework for Bayesian estimation of
antigen-driven selection in immunoglobulin (Ig) sequences, providing an
intuitive means of analyzing selection by quantifying the degree of
selective pressure. Also provides tools to profile mutations in Ig
sequences, build models of somatic hypermutation (SHM) in Ig sequences,
and make model-dependent distance comparisons of Ig repertoires.
Author: Mohamed Uduman [aut],
Gur Yaari [aut],
Namita Gupta [aut],
Jason Vander Heiden [aut, cre],
Ang Cui [ctb],
Susanna Marquez [ctb],
Julian Zhou [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@yale.edu>
Diff between shazam versions 0.1.2 dated 2016-02-21 and 0.1.3 dated 2016-07-31
shazam-0.1.2/shazam/R/shazam.R |only shazam-0.1.2/shazam/data/InfluenzaDb.rda |only shazam-0.1.2/shazam/man/InfluenzaDb.Rd |only shazam-0.1.2/shazam/man/calcDBExpectedMutations.Rd |only shazam-0.1.2/shazam/man/calcDBObservedMutations.Rd |only shazam-0.1.2/shazam/man/collapseByClone.Rd |only shazam-0.1.3/shazam/DESCRIPTION | 32 shazam-0.1.3/shazam/MD5 | 122 - shazam-0.1.3/shazam/NAMESPACE | 39 shazam-0.1.3/shazam/NEWS.md | 53 shazam-0.1.3/shazam/R/Baseline.R | 1551 ++++++++------- shazam-0.1.3/shazam/R/Core.R | 34 shazam-0.1.3/shazam/R/DistToNearest.R | 719 +++--- shazam-0.1.3/shazam/R/MutationDefinitions.R | 18 shazam-0.1.3/shazam/R/MutationProfiling.R | 327 +-- shazam-0.1.3/shazam/R/RegionDefinitions.R | 6 shazam-0.1.3/shazam/R/Shazam.R |only shazam-0.1.3/shazam/R/Shmulate.R |only shazam-0.1.3/shazam/R/TargetingModels.R | 166 - shazam-0.1.3/shazam/README.md | 83 shazam-0.1.3/shazam/build/vignette.rds |binary shazam-0.1.3/shazam/data/MRS5NFModel.rda |only shazam-0.1.3/shazam/data/VOLUME_MUTATIONS.rda |only shazam-0.1.3/shazam/inst/CITATION | 5 shazam-0.1.3/shazam/inst/doc/Baseline-Vignette.R | 91 shazam-0.1.3/shazam/inst/doc/Baseline-Vignette.Rmd | 265 +- shazam-0.1.3/shazam/inst/doc/Baseline-Vignette.pdf |binary shazam-0.1.3/shazam/inst/doc/DistToNearest-Vignette.R | 64 shazam-0.1.3/shazam/inst/doc/DistToNearest-Vignette.Rmd | 141 - shazam-0.1.3/shazam/inst/doc/DistToNearest-Vignette.pdf |binary shazam-0.1.3/shazam/inst/doc/Targeting-Vignette.R | 23 shazam-0.1.3/shazam/inst/doc/Targeting-Vignette.Rmd | 70 shazam-0.1.3/shazam/inst/doc/Targeting-Vignette.pdf |binary shazam-0.1.3/shazam/inst/markr |only shazam-0.1.3/shazam/man/HS1FDistance.Rd | 2 shazam-0.1.3/shazam/man/HS5FModel.Rd | 7 shazam-0.1.3/shazam/man/IMGT_SCHEMES.Rd | 2 shazam-0.1.3/shazam/man/M1NDistance.Rd | 2 shazam-0.1.3/shazam/man/MRS5NFModel.Rd |only shazam-0.1.3/shazam/man/MUTATION_SCHEMES.Rd | 11 shazam-0.1.3/shazam/man/U5NModel.Rd | 5 shazam-0.1.3/shazam/man/calcBaseline.Rd | 50 shazam-0.1.3/shazam/man/calcExpectedMutations.Rd | 19 shazam-0.1.3/shazam/man/calcObservedMutations.Rd | 15 shazam-0.1.3/shazam/man/calcTargetingDistance.Rd | 12 shazam-0.1.3/shazam/man/collapseClones.Rd |only shazam-0.1.3/shazam/man/createMutabilityMatrix.Rd | 22 shazam-0.1.3/shazam/man/createMutationDefinition.Rd | 2 shazam-0.1.3/shazam/man/createRegionDefinition.Rd | 2 shazam-0.1.3/shazam/man/createSubstitutionMatrix.Rd | 17 shazam-0.1.3/shazam/man/createTargetingMatrix.Rd | 34 shazam-0.1.3/shazam/man/createTargetingModel.Rd | 20 shazam-0.1.3/shazam/man/distToNearest.Rd | 38 shazam-0.1.3/shazam/man/expectedMutations.Rd |only shazam-0.1.3/shazam/man/extendMutabilityMatrix.Rd | 19 shazam-0.1.3/shazam/man/extendSubstitutionMatrix.Rd | 18 shazam-0.1.3/shazam/man/getBaselineStats.Rd | 30 shazam-0.1.3/shazam/man/groupBaseline.Rd | 61 shazam-0.1.3/shazam/man/observedMutations.Rd |only shazam-0.1.3/shazam/man/plotBaselineDensity.Rd | 86 shazam-0.1.3/shazam/man/plotBaselineSummary.Rd | 60 shazam-0.1.3/shazam/man/plotMutability.Rd | 14 shazam-0.1.3/shazam/man/shazam.Rd | 97 shazam-0.1.3/shazam/man/shmulateSeq.Rd |only shazam-0.1.3/shazam/man/shmulateTree.Rd |only shazam-0.1.3/shazam/man/summarizeBaseline.Rd | 36 shazam-0.1.3/shazam/man/testBaseline.Rd |only shazam-0.1.3/shazam/man/writeTargetingDistance.Rd | 13 shazam-0.1.3/shazam/vignettes/Baseline-Vignette.Rmd | 265 +- shazam-0.1.3/shazam/vignettes/DistToNearest-Vignette.Rmd | 141 - shazam-0.1.3/shazam/vignettes/Targeting-Vignette.Rmd | 70 71 files changed, 2800 insertions(+), 2179 deletions(-)
Title: Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Fast covariance matrix calculation, Mahalanobis distance and column-wise variances are some of the functions.
Author: Michail Tsagris, Manos Papadakis, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis and John Burkardt
Maintainer: Manos Papadakis <papadakm95@gmail.com>
Diff between Rfast versions 1.0 dated 2016-07-10 and 1.1 dated 2016-07-31
Rfast-1.0/Rfast/src/fast_cpp.cpp |only Rfast-1.1/Rfast/DESCRIPTION | 11 Rfast-1.1/Rfast/MD5 | 84 ++++-- Rfast-1.1/Rfast/NAMESPACE | 2 Rfast-1.1/Rfast/R/allbetas.R | 6 Rfast-1.1/Rfast/R/colMads.R |only Rfast-1.1/Rfast/R/colVars.R | 6 Rfast-1.1/Rfast/R/cora.R | 2 Rfast-1.1/Rfast/R/correls.R | 2 Rfast-1.1/Rfast/R/cova.R | 2 Rfast-1.1/Rfast/R/diri.nr2.R |only Rfast-1.1/Rfast/R/dista.R | 6 Rfast-1.1/Rfast/R/fast_cpp.R | 64 ++++ Rfast-1.1/Rfast/R/fast_p_cpp.R |only Rfast-1.1/Rfast/R/ftests.R | 8 Rfast-1.1/Rfast/R/gsquare_ex.R |only Rfast-1.1/Rfast/R/mahala.R | 28 -- Rfast-1.1/Rfast/R/mvbetas.R |only Rfast-1.1/Rfast/R/standardise.R | 11 Rfast-1.1/Rfast/R/ttests.R | 6 Rfast-1.1/Rfast/man/Match.Rd |only Rfast-1.1/Rfast/man/Rfast-package.Rd | 14 - Rfast-1.1/Rfast/man/allbetas.Rd | 7 Rfast-1.1/Rfast/man/cholesky.Rd |only Rfast-1.1/Rfast/man/colMads.Rd |only Rfast-1.1/Rfast/man/colMedians.Rd | 26 + Rfast-1.1/Rfast/man/colMins.Rd |only Rfast-1.1/Rfast/man/colVars.Rd | 8 Rfast-1.1/Rfast/man/colmeans.Rd |only Rfast-1.1/Rfast/man/colsums.Rd |only Rfast-1.1/Rfast/man/correls.Rd | 2 Rfast-1.1/Rfast/man/design_matrix.Rd |only Rfast-1.1/Rfast/man/diri.nr2.Rd |only Rfast-1.1/Rfast/man/diri_nr_type2.Rd |only Rfast-1.1/Rfast/man/g2Test.Rd |only Rfast-1.1/Rfast/man/g2Test_univariate.Rd |only Rfast-1.1/Rfast/man/generate_key_1.Rd |only Rfast-1.1/Rfast/man/generate_key_2.Rd |only Rfast-1.1/Rfast/man/hash.find.Rd |only Rfast-1.1/Rfast/man/hash.list.Rd |only Rfast-1.1/Rfast/man/mahala.Rd | 19 - Rfast-1.1/Rfast/man/med.Rd |only Rfast-1.1/Rfast/man/mvbetas.Rd |only Rfast-1.1/Rfast/man/nth.Rd | 4 Rfast-1.1/Rfast/man/regression.Rd |only Rfast-1.1/Rfast/man/sort_mat.Rd |only Rfast-1.1/Rfast/man/standardise.Rd | 2 Rfast-1.1/Rfast/man/which_isFactor.Rd |only Rfast-1.1/Rfast/src/Makevars | 4 Rfast-1.1/Rfast/src/Makevars.win | 4 Rfast-1.1/Rfast/src/all__functions.cpp | 413 +++++++++++++++++++++++++------ Rfast-1.1/Rfast/src/all__functions_p.cpp |only Rfast-1.1/Rfast/src/fast.cpp |only Rfast-1.1/Rfast/src/fast_p.cpp |only Rfast-1.1/Rfast/src/g2t.cpp |only Rfast-1.1/Rfast/src/g2t.h |only Rfast-1.1/Rfast/src/gsquare_ex.cpp |only Rfast-1.1/Rfast/src/maha.cpp |only Rfast-1.1/Rfast/src/maha_ex.cpp |only Rfast-1.1/Rfast/src/mn.cpp |only Rfast-1.1/Rfast/src/mn.h |only 61 files changed, 549 insertions(+), 192 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov processes (POMPs, AKA stochastic dynamical systems, state-space models). 'pomp' provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a platform for the implementation of new inference methods.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.6 dated 2016-06-30 and 1.7 dated 2016-07-31
DESCRIPTION | 8 - MD5 | 110 ++++++++++---------- R/abc.R | 14 -- R/bsmc.R | 14 -- R/bsmc2.R | 13 -- R/builder.R | 37 ++---- R/generics.R | 275 ++++++++++++++++++++++++++++++++++++++++++++++++++- R/mif.R | 3 R/mif2.R | 3 R/nlf_objfun.R | 4 R/pfilter.R | 2 R/plugins.R | 10 - R/pmcmc.R | 13 -- R/pomp.R | 149 ++++++++++++--------------- R/pomp_class.R | 16 +- R/pomp_fun.R | 29 +++-- R/pomp_methods.R | 36 +++--- R/probe.R | 13 +- R/probe_match.R | 17 +-- R/spect.R | 2 R/trajectory_pomp.R | 2 build/partial.rdb |binary inst/NEWS | 16 ++ inst/NEWS.Rd | 11 ++ man/abc.Rd | 2 man/bsmc.Rd | 4 man/kalman.Rd | 17 +++ man/mif.Rd | 3 man/mif2.Rd | 5 man/nlf.Rd | 2 man/pfilter.Rd | 2 man/pmcmc.Rd | 2 man/pomp.Rd | 38 +++---- man/pomp_methods.Rd | 2 man/probe.Rd | 6 + man/simulate_pomp.Rd | 2 man/spect.Rd | 4 man/traj_match.Rd | 4 src/bspline.c | 12 +- src/dmeasure.c | 14 +- src/dprior.c | 5 src/dsobol.c | 4 src/euler.c | 39 +++++-- src/initstate.c | 14 +- src/partrans.c | 12 +- src/pfilter.c | 4 src/pomp_fun.c | 9 + src/pomp_internal.h | 8 - src/probe.c | 6 - src/rmeasure.c | 14 +- src/rprior.c | 11 +- src/simulate.c | 2 src/skeleton.c | 16 ++ src/synth_lik.c | 3 src/trajectory.c | 56 ++++++++-- src/userdata.c | 10 - 56 files changed, 764 insertions(+), 365 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, PCA and correlation matrices, cluster analyses, scatter
plots, Likert scales, effects plots of regression models (including interaction
terms) and much more. This package supports labelled data.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.0.1 dated 2016-06-21 and 2.0.2 dated 2016-07-31
DESCRIPTION | 15 MD5 | 52 NAMESPACE | 399 +-- NEWS | 22 NEWS.md | 42 R/helpfunctions.R | 17 R/sjPlotAncovaLSMeans.R | 15 R/sjPlotAnova.R | 6 R/sjPlotClusterAnalysis.R | 13 R/sjPlotCorr.R | 33 R/sjPlotGLME.R | 4776 ++++++++++++++++++++++----------------------- R/sjPlotGroupFrequencies.R | 1583 +++++++------- R/sjPlotInteractions.R | 3111 ++++++++++++++--------------- R/sjPlotLinreg.R | 94 R/sjPlotLinregMultiple.R | 3 R/sjPlotOdds.R | 14 R/sjPlotOddsMultiple.R | 2 R/sjPlotPropTable.R | 9 R/sjPlotSetTheme.R | 125 - R/sjTabLinReg.R | 11 R/sjTabOdds.R | 21 build/partial.rdb |binary man/save_plot.Rd | 3 man/sjPlot-package.Rd | 106 man/sjp.lmer.Rd | 10 man/sjp.setTheme.Rd | 22 man/sjt.itemanalysis.Rd | 360 +-- 27 files changed, 5448 insertions(+), 5416 deletions(-)
Title: Nonlinear Calibration
Description: Performs nonlinear calibration and curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc. Its precursor is Ruminex.
Author: Youyi Fong <yfong@fhcrc.org>, Krisztian Sebestyen <ksebestyen@gmail.com>, Xuesong Yu <xyu@scharp.org>
Maintainer: Youyi Fong <yfong@fhcrc.org>
Diff between nCal versions 2016.7-26 dated 2016-07-26 and 2016.7-31 dated 2016-07-31
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/doc/nCal-vignette.pdf |binary 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Change Point Regression
Description: Change point regression models are also called two-phase regression, break-point regression, split-point regression, structural change models and threshold regression models. Hypothesis testing in change point logistic regression with or without interaction terms. Several options are provided for testing in models with interaction, including a maximum of likelihood ratios test that determines p-value through Monte Carlo. Estimation under change point model is also included, but less developed at this point.
Author: Youyi Fong
Maintainer: Youyi Fong <yfong@fhcrc.org>
Diff between chngpt versions 2016.7-9 dated 2016-07-10 and 2016.7-31 dated 2016-07-31
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Super Imposition by Translation and Rotation Growth Curve
Analysis
Description: Functions for fitting and plotting SITAR (Super Imposition by
Translation And Rotation) growth curve models. SITAR is a shape-invariant model
with a regression B-spline mean curve and subject-specific random effects on
both the measurement and age scales.
Author: Tim Cole
Maintainer: Tim Cole <tim.cole@ucl.ac.uk>
Diff between sitar versions 1.0.6 dated 2016-05-05 and 1.0.7 dated 2016-07-31
sitar-1.0.6/sitar/R/lms2z.R |only sitar-1.0.6/sitar/R/update.sitar.R |only sitar-1.0.6/sitar/man/funcall.rd |only sitar-1.0.6/sitar/man/getCovariate.sitar.Rd |only sitar-1.0.6/sitar/man/getVarCov.sitar.Rd |only sitar-1.0.6/sitar/man/lms2z.Rd |only sitar-1.0.6/sitar/man/xaxsd.rd |only sitar-1.0.7/sitar/DESCRIPTION | 15 sitar-1.0.7/sitar/MD5 | 101 +++--- sitar-1.0.7/sitar/NAMESPACE | 98 +++++- sitar-1.0.7/sitar/NEWS | 21 + sitar-1.0.7/sitar/R/BICadj.R | 99 +++++- sitar-1.0.7/sitar/R/LMS2z.R |only sitar-1.0.7/sitar/R/LMSfit.R | 50 +++ sitar-1.0.7/sitar/R/anova.sitar.R | 18 + sitar-1.0.7/sitar/R/getData.sitar.R |only sitar-1.0.7/sitar/R/heights.R |only sitar-1.0.7/sitar/R/ifun.R | 173 ++++++++++- sitar-1.0.7/sitar/R/mplot.R | 27 + sitar-1.0.7/sitar/R/plot.sitar.R | 196 +++++++++--- sitar-1.0.7/sitar/R/plotclean.R | 28 + sitar-1.0.7/sitar/R/predict.sitar.R | 91 ++++- sitar-1.0.7/sitar/R/sitar-package.R |only sitar-1.0.7/sitar/R/sitar.R | 269 ++++++++++++++++- sitar-1.0.7/sitar/R/sitarlib.R | 415 ++++++++++++++++++++++++--- sitar-1.0.7/sitar/R/uk90.R |only sitar-1.0.7/sitar/R/ukwhopt.R |only sitar-1.0.7/sitar/R/who06.R |only sitar-1.0.7/sitar/R/xyadj.R | 39 ++ sitar-1.0.7/sitar/man/BICadj.Rd | 77 +++-- sitar-1.0.7/sitar/man/LMS2z.Rd |only sitar-1.0.7/sitar/man/LMSfit.Rd | 101 +++--- sitar-1.0.7/sitar/man/anova.sitar.Rd | 46 ++ sitar-1.0.7/sitar/man/bupdate.Rd | 27 + sitar-1.0.7/sitar/man/cLMS.Rd | 71 ++-- sitar-1.0.7/sitar/man/codeplot.Rd | 46 ++ sitar-1.0.7/sitar/man/funcall.Rd |only sitar-1.0.7/sitar/man/getData.sitar.Rd | 35 +- sitar-1.0.7/sitar/man/heights.Rd | 29 + sitar-1.0.7/sitar/man/ifun.Rd | 137 ++++++-- sitar-1.0.7/sitar/man/makess.Rd | 40 +- sitar-1.0.7/sitar/man/mplot.Rd | 57 ++- sitar-1.0.7/sitar/man/plot.sitar.Rd | 149 +++++---- sitar-1.0.7/sitar/man/plotclean.Rd | 60 ++- sitar-1.0.7/sitar/man/predict.sitar.Rd | 84 ++++- sitar-1.0.7/sitar/man/print.sitar.Rd | 23 - sitar-1.0.7/sitar/man/print.summary.sitar.Rd | 23 - sitar-1.0.7/sitar/man/recalib.Rd | 63 ++-- sitar-1.0.7/sitar/man/sitar-package.Rd | 145 +++++---- sitar-1.0.7/sitar/man/sitar.Rd | 207 ++++++++----- sitar-1.0.7/sitar/man/subsample.Rd | 71 ++-- sitar-1.0.7/sitar/man/summary.sitar.Rd | 40 +- sitar-1.0.7/sitar/man/uk90.Rd | 108 +++---- sitar-1.0.7/sitar/man/ukwhopt.Rd | 84 ++--- sitar-1.0.7/sitar/man/velout.Rd | 103 +++--- sitar-1.0.7/sitar/man/who06.Rd | 91 +++-- sitar-1.0.7/sitar/man/xaxsd.Rd |only sitar-1.0.7/sitar/man/xyadj.Rd | 65 ++-- sitar-1.0.7/sitar/man/y2plot.Rd | 72 ++-- sitar-1.0.7/sitar/man/z2cent.Rd | 33 +- 60 files changed, 2704 insertions(+), 1023 deletions(-)
Title: Copula Based Imputation Method
Description: Copula based imputation method. A semiparametric imputation procedure for missing multivariate data based on conditional copula specifications.
Author: Francesca Marta Lilja Di Lascio, Simone Giannerini
Maintainer: Francesca Marta Lilja Di Lascio
<marta.dilascio@unibz.it>
Diff between CoImp versions 0.2-3 dated 2014-03-01 and 0.3-0 dated 2016-07-31
ChangeLog | 60 +++++++++++------- DESCRIPTION | 15 ++-- MD5 | 32 ++++----- NAMESPACE | 7 +- R/CoImp.R | 151 +++++++++++++++++++++++------------------------ R/CoImp_Esterne.R | 6 - R/MAR.R | 3 R/MCAR.R | 4 - R/PerfMeasure.R | 41 +++++++++--- man/CoImp-class.Rd | 4 - man/CoImp.Rd | 60 ++++++++++++++---- man/MAR-class.Rd | 4 - man/MAR.Rd | 6 + man/MCAR-class.Rd | 4 - man/MCAR.Rd | 6 + man/PerfMeasure-class.Rd | 4 - man/PerfMeasure.Rd | 16 ++-- 17 files changed, 258 insertions(+), 165 deletions(-)
Title: Iterator Based Expression Template Expansion of Standard
Operators
Description: Creates an easy way to use expression templates with R
semantics on any iterator based structure.
Author: Daniel C. Dillon
Maintainer: Daniel C. Dillon <dcdillon@gmail.com>
Diff between RcppHoney versions 0.1.0 dated 2016-07-26 and 0.1.1 dated 2016-07-31
RcppHoney-0.1.0/RcppHoney/inst/tests |only RcppHoney-0.1.1/RcppHoney/DESCRIPTION | 9 RcppHoney-0.1.1/RcppHoney/MD5 | 18 - RcppHoney-0.1.1/RcppHoney/NAMESPACE | 6 RcppHoney-0.1.1/RcppHoney/R/unit.tests.R |only RcppHoney-0.1.1/RcppHoney/README.md | 35 +- RcppHoney-0.1.1/RcppHoney/inst/include/RcppHoney/functions.hpp | 172 ++++++++++ RcppHoney-0.1.1/RcppHoney/inst/include/RcppHoney/functors.hpp | 97 +++-- RcppHoney-0.1.1/RcppHoney/inst/unitTests |only RcppHoney-0.1.1/RcppHoney/src/examples.cpp | 2 RcppHoney-0.1.1/RcppHoney/tests |only 11 files changed, 284 insertions(+), 55 deletions(-)
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider <schneider.393@osu.edu>
Diff between NSM3 versions 1.5 dated 2016-04-15 and 1.6 dated 2016-07-31
DESCRIPTION | 8 - MD5 | 30 ++--- R/cHaySton.R | 209 +++++++++++++++++------------------ R/cNDWol.R | 207 +++++++++++++++++------------------ R/pFrd.R | 300 +++++++++++++++++++++++++-------------------------- R/pKW.R | 227 +++++++++++++++++++------------------- R/print.NSM3Ch5c.R | 50 ++++---- R/print.NSM3Ch5p.R | 52 ++++---- R/print.NSM3Ch6MCc.R | 51 ++++---- R/print.NSM3Ch6MCp.R | 58 ++++----- R/print.NSM3Ch6c.R | 51 ++++---- R/print.NSM3Ch6p.R | 54 ++++----- R/print.NSM3Ch7MCc.R | 50 ++++---- R/print.NSM3Ch7MCp.R | 50 ++++---- R/print.NSM3Ch7c.R | 69 +++++------ R/print.NSM3Ch7p.R | 65 +++++------ 16 files changed, 762 insertions(+), 769 deletions(-)
Title: Goodness-of-Fit Tests using Kernelized Stein Discrepancy
Description: An adaptation of Kernelized Stein Discrepancy, this package provides a goodness-of-fit test of whether a given i.i.d. sample is drawn from a given distribution. It works for any distribution once its score function (the derivative of log-density) can be provided. This method is based on "A Kernelized Stein Discrepancy for Goodness-of-fit Tests and Model Evaluation" by Liu, Lee, and Jordan, available at <http://arxiv.org/abs/1602.03253>.
Author: Min Hyung Kang [aut, cre],
Qiang Liu [aut]
Maintainer: Min Hyung Kang <Minhyung.Daniel.Kang@gmail.com>
Diff between KSD versions 0.1.0 dated 2016-07-08 and 1.0.0 dated 2016-07-31
DESCRIPTION | 18 +++++------ MD5 | 16 +++++----- NEWS.md | 7 +++- R/KSD.R | 38 ++++++++++++------------ R/demo_iris.R | 4 +- R/demo_simple_gmm.R | 80 ++++++++++++++++++++++++++-------------------------- R/median_distance.R | 4 +- README.md | 12 +++---- man/KSD.Rd | 22 +++++++------- 9 files changed, 103 insertions(+), 98 deletions(-)
Title: Applied Statistical Time Series Analysis
Description: Contains data sets and scripts to accompany Time Series Analysis and Its Applications: With R Examples by Shumway and Stoffer, fourth edition.
Author: David Stoffer
Maintainer: David Stoffer <stoffer@pitt.edu>
Diff between astsa versions 1.4 dated 2016-06-29 and 1.5 dated 2016-07-31
ChangeLog | 17 ++++++++++++++++- DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++---------- NAMESPACE | 4 ++-- R/acf2.R | 6 +++--- R/sarima.R | 8 ++++---- R/sarima.for.R | 6 ++++-- data/djia.rda |only man/Kfilter0.Rd | 2 +- man/Kfilter1.Rd | 3 ++- man/astsa-package.Rd | 4 ++-- man/djia.Rd |only man/sarima.Rd | 4 ++-- 13 files changed, 52 insertions(+), 32 deletions(-)