Mon, 01 Aug 2016

Package gmapsdistance updated to version 2.0 with previous version 1.0 dated 2015-09-08

Title: Distance and Travel Time Between Two Points from Google Maps
Description: Get distance and travel time between two points from Google Maps. Four possible modes of transportation (bicycling, walking, driving and public transportation).
Author: Rodrigo Azuero Melo
Maintainer: Rodrigo Azuero Melo <rodazuero@gmail.com>

Diff between gmapsdistance versions 1.0 dated 2015-09-08 and 2.0 dated 2016-08-01

 DESCRIPTION          |   12 +-
 MD5                  |   17 ++--
 NAMESPACE            |    4 
 R/gmapsdistance.R    |  211 +++++++++++++++++++++++++++++----------------------
 README.md            |   93 ++++++++++------------
 demo/example1.R      |    4 
 demo/example2.R      |   13 +--
 man/get.api.key.Rd   |only
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 man/pkg.env.Rd       |only
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 11 files changed, 221 insertions(+), 199 deletions(-)

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Package water updated to version 0.5 with previous version 0.3.2 dated 2016-05-04

Title: Actual Evapotranspiration with Energy Balance Models
Description: Tools and functions to calculate actual evapotranspiration using surface energy balance models.
Author: Guillermo Federico Olmedo [aut, cre], Samuel Ortega-Farias [aut], David Fonseca-Luengo [aut], Daniel de la Fuente-Saiz [aut], Fernando Fuentes PeƱailillo [aut]
Maintainer: Guillermo Federico Olmedo <guillermo.olmedo@gmail.com>

Diff between water versions 0.3.2 dated 2016-05-04 and 0.5 dated 2016-08-01

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 water-0.5/water/R/water_ET.R                  |   63 +++-
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 water-0.5/water/R/water_WeatherStation.R      |    4 
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 water-0.5/water/R/water_sensibleHeatFlux.R    |  399 +++++++++++++++++---------
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 water-0.5/water/data/DEM_Talca.rda            |binary
 water-0.5/water/data/L7_Talca.rda             |binary
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 water-0.5/water/inst/doc/METRIC_simple.html   |   61 ++-
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 water-0.5/water/vignettes/METRIC_simple.Rmd   |   15 
 32 files changed, 647 insertions(+), 516 deletions(-)

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Package UpSetR updated to version 1.2.3 with previous version 1.2.2 dated 2016-06-24

Title: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Description: Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks.
Author: Jake Conway [cre], Nils Gehlenborg [aut]
Maintainer: Jake Conway <jake_conway@student.uml.edu>

Diff between UpSetR versions 1.2.2 dated 2016-06-24 and 1.2.3 dated 2016-08-01

 DESCRIPTION                      |    8 ++++----
 MD5                              |   22 +++++++++++-----------
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 inst/doc/attribute.plots.html    |   10 +++++-----
 inst/doc/basic.usage.R           |    3 +++
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 inst/doc/queries.html            |   10 +++++-----
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 man/upset.Rd                     |    4 +++-
 vignettes/basic.usage.Rmd        |   13 +++++++++++--
 12 files changed, 113 insertions(+), 68 deletions(-)

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New package IndTestPP with initial version 1.0
Package: IndTestPP
Type: Package
Title: Tests of Independence Between Point Processes in Time
Version: 1.0
Date: 2016-08-01
Author: Ana C. Cebrian <acebrian@unizar.es>
Maintainer: Ana C. Cebrian <acebrian@unizar.es>
Imports: parallel, stats
Description: Several parametric and non-parametric tests and measures to check independence between two or more (homogeneous or nonhomogeneous) point processes in time are provided. Tools for simulating point processes in one dimension with different types of dependence are also implemented.
License: GPL
NeedsCompilation: no
Packaged: 2016-08-01 19:55:08 UTC; Ana
Repository: CRAN
Date/Publication: 2016-08-01 23:46:57

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New package synergyfinder with initial version 0.1
Package: synergyfinder
Type: Package
Title: Calculate and Visualize Synergy Scores for Drug Combinations
Version: 0.1
Date: 2016-04-15
Author: Liye He <liye.he@helsinki.fi>, Jing Tang <jing.tang@helsinki.fi>
Maintainer: Liye He <liye.he@helsinki.fi>
Imports: drc (>= 2.5-12), reshape2 (>= 1.4.1), kriging (>= 1.1), ggplot2 (>= 2.1.0), gridBase (>= 0.4-7), grid (>= 3.2.4), lattice (>= 0.20-33), gplots (>= 3.0.0), nleqslv(>= 3.0)
Description: Efficient implementations for all the popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of the synergy scores as either a two-dimensional or a three-dimensional interaction surface over the dose matrix.
License: Artistic License 2.0
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-04 06:49:24 UTC; admin
Repository: CRAN
Date/Publication: 2016-08-01 22:28:33

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Package photobiologyWavebands updated to version 0.4.1 with previous version 0.4.0 dated 2016-02-03

Title: Waveband Definitions for 'UV', 'VIS', and 'IR' Radiation
Description: Constructors of waveband objects for commonly used biological spectral weighting functions ('BSWFs') and for different wavebands describing named ranges of wavelengths in the ultraviolet ('UV'), visible ('VIS') and infrared ('IR') regions of the electromagnetic spectrum.
Author: Pedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

Diff between photobiologyWavebands versions 0.4.0 dated 2016-02-03 and 0.4.1 dated 2016-08-01

 DESCRIPTION                          |   28 +++++++++++++++++-----------
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 R/pg.r                               |    2 +-
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 13 files changed, 46 insertions(+), 36 deletions(-)

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Package Fgmutils updated to version 0.7 with previous version 0.6 dated 2016-07-09

Title: Forest Growth Model Utilities
Description: Growth models and forest production require existing data manipulation and the creation of new data, structured from basic forest inventory data. The purpose of this package is provide functions to support these activities.
Author: Clayton Vieira Fraga Filho, Ana Paula Simiqueli, Gilson Fernandes da Silva, Miqueias Fernandes, Wagner Amorim da Silva Altoe
Maintainer: Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>

Diff between Fgmutils versions 0.6 dated 2016-07-09 and 0.7 dated 2016-08-01

 DESCRIPTION           |   10 +-
 MD5                   |    6 -
 NEWS                  |    2 
 R/atualizaCampoBase.R |  197 ++++++++++++--------------------------------------
 4 files changed, 61 insertions(+), 154 deletions(-)

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New package cdlTools with initial version 0.11
Package: cdlTools
Title: Tools to Download and Work with USDA Cropscape Data
Version: 0.11
Date: 2016-07-26
Author: Lu Chen and Jonathan Lisic
Maintainer: Jonathan Lisic <jonathan.lisic@nass.usda.gov>
Description: Downloads USDA National Agricultural Statistics Service (NASS) cropscape data for a specified state. Utilities for fips, abbreviation, and name conversion are also provided. Full functionality requires an internet connection, but data sets can be cached for later off-line use.
License: Unlimited
LazyData: true
Imports: RCurl, raster, XML, rgdal
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-01 18:46:12 UTC; jonathanlisic
Repository: CRAN
Date/Publication: 2016-08-01 21:41:46

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Package RcppGetconf updated to version 0.0.2 with previous version 0.0.1 dated 2016-07-28

Title: 'Rcpp' Interface for Querying System Configuration Variables
Description: The 'getconf' command-line tool provided by 'libc' allows querying of a large number of system variables. This package provides similar functionality.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppGetconf versions 0.0.1 dated 2016-07-28 and 0.0.2 dated 2016-08-01

 ChangeLog           |   17 +
 DESCRIPTION         |   14 
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New package Cyclops with initial version 1.2.0
Package: Cyclops
Type: Package
Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis
Version: 1.2.0
Author: Marc A. Suchard [aut, cre], Martijn J. Schuemie [aut], Trevor R. Shaddox [aut]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Description: This model fitting tool incorporates cyclic coordinate descent and majorization-minimization approaches to fit a variety of regression models found in large-scale observational healthcare data. Implementations focus on computational optimization and fine-scale parallelization to yield efficient inference in massive datasets.
License: Apache License 2.0
LazyData: Yes
URL: https://github.com/ohdsi/cyclops
BugReports: https://github.com/ohdsi/cyclops/issues
Depends: R (>= 3.1.0)
Imports: Matrix, Rcpp (>= 0.12.4), bit, ff, ffbase, RcppParallel, methods
LinkingTo: Rcpp, BH (>= 1.51.0), RcppEigen (>= 0.3.2), RcppParallel
Suggests: testthat, survival, gnm, ggplot2
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-01 17:37:30 UTC; msuchard
Repository: CRAN
Date/Publication: 2016-08-01 20:41:16

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Package seqHMM updated to version 1.0.6 with previous version 1.0.5 dated 2016-02-24

Title: Hidden Markov Models for Life Sequences and Other Multivariate, Multichannel Categorical Time Series
Description: Designed for fitting hidden (latent) Markov models and mixture hidden Markov models for social sequence data and other categorical time series. Also some more restricted versions of these type of models are available: Markov models, mixture Markov models, and latent class models. The package supports models for one or multiple subjects with one or multiple parallel sequences (channels). External covariates can be added to explain cluster membership in mixture models. The package provides functions for evaluating and comparing models, as well as functions for easy plotting of multichannel sequence data and hidden Markov models. Models are estimated using maximum likelihood via the EM algorithm and/or direct numerical maximization with analytical gradients. All main algorithms are written in C++ with support for parallel computation.
Author: Jouni Helske, Satu Helske
Maintainer: Jouni Helske <jouni.helske@jyu.fi>

Diff between seqHMM versions 1.0.5 dated 2016-02-24 and 1.0.6 dated 2016-08-01

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Package revealjs updated to version 0.7 with previous version 0.6 dated 2016-03-08

Title: R Markdown Format for 'reveal.js' Presentations
Description: R Markdown format for 'reveal.js' presentations, a framework for easily creating beautiful presentations using HTML.
Author: Hakim El Hattab [aut, cph] (reveal.js-3.2.0, https://github.com/hakimel/reveal.js), JJ Allaire [aut, cre], RStudio [cph]
Maintainer: JJ Allaire <jj@rstudio.com>

Diff between revealjs versions 0.6 dated 2016-03-08 and 0.7 dated 2016-08-01

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 revealjs-0.7/revealjs/DESCRIPTION                                                           |    8 
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 revealjs-0.7/revealjs/inst/NEWS                                                             |   15 
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Package photobiology updated to version 0.9.9 with previous version 0.9.8 dated 2016-05-19

Title: 'Photobiological' Calculations
Description: Definitions of classes, methods, operators and functions for use in 'photobiology' and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted 'irradiances'/doses, 'fluence' rates, 'transmittance', 'reflectance', 'absorptance', 'absorbance' and diverse ratios and other derived quantities from spectral data. Local 'maxima' and 'minima'. Conversion between energy- and photon-based units. Wavelength interpolation. Astronomical calculations related solar angles and day length. Colours and vision.
Author: Pedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

Diff between photobiology versions 0.9.8 dated 2016-05-19 and 0.9.9 dated 2016-08-01

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New package hyper.fit with initial version 1.0.3
Package: hyper.fit
Type: Package
Title: Generic N-Dimensional Hyperplane Fitting with Heteroscedastic Covariant Errors and Intrinsic Scatter
Version: 1.0.3
Date: 2016-08-01
Author: Aaron Robotham and Danail Obreschkow
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Description: Includes two main high level codes for hyperplane fitting (hyper.fit) and visualising (hyper.plot2d / hyper.plot3d). In simple terms this allows the user to produce robust 1D linear fits for 2D x vs y type data, and robust 2D plane fits to 3D x vs y vs z type data. This hyperplane fitting works generically for any N-1 hyperplane model being fit to a N dimension dataset. All fits include intrinsic scatter in the generative model orthogonal to the hyperplane.
License: GPL-3
Depends: R (>= 3.00), magicaxis, MASS, rgl, LaplacesDemon
NeedsCompilation: no
Packaged: 2016-08-01 13:27:23 UTC; aaron
Repository: CRAN
Date/Publication: 2016-08-01 17:29:45

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Package HDclassif updated to version 2.0 with previous version 1.3 dated 2015-07-01

Title: High Dimensional Supervised Classification and Clustering
Description: Discriminant analysis and data clustering methods for high dimensional data, based on the assumption that high-dimensional data live in different subspaces with low dimensionality proposing a new parametrization of the Gaussian mixture model which combines the ideas of dimension reduction and constraints on the model.
Author: Laurent Berge, Charles Bouveyron and Stephane Girard
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>

Diff between HDclassif versions 1.3 dated 2015-07-01 and 2.0 dated 2016-08-01

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Package dygraphs updated to version 1.1.1.0 with previous version 0.9 dated 2016-04-24

Title: Interface to 'Dygraphs' Interactive Time Series Charting Library
Description: An R interface to the 'dygraphs' JavaScript charting library (a copy of which is included in the package). Provides rich facilities for charting time-series data in R, including highly configurable series- and axis-display and interactive features like zoom/pan and series/point highlighting.
Author: Dan Vanderkam [aut, cph] (dygraphs library in htmlwidgets/lib, http://dygraphs.com/), JJ Allaire [aut, cre] (R interface), RStudio [cph], Jonathan Owen [aut, cph], Daniel Gromer [aut, cph], Petr Shevtsov [aut, cph], Benoit Thieurmel [aut, cph], jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/htmlwidgets/lib/jquery/AUTHORS.txt)
Maintainer: JJ Allaire <jj@rstudio.com>

Diff between dygraphs versions 0.9 dated 2016-04-24 and 1.1.1.0 dated 2016-08-01

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Package effsize updated to version 0.6.4 with previous version 0.6.2 dated 2016-03-31

Title: Efficient Effect Size Computation
Description: A collection of functions to compute the standardized effect sizes for experiments (Cohen d, Hedges g, Cliff delta, Vargha-Delaney A). The computation algorithms have been optimized to allow efficient computation even with very large data sets.
Author: Marco Torchiano [aut, cre]
Maintainer: Marco Torchiano <marco.torchiano@polito.it>

Diff between effsize versions 0.6.2 dated 2016-03-31 and 0.6.4 dated 2016-08-01

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New package clogitLasso with initial version 1.0
Package: clogitLasso
Type: Package
Title: Lasso Estimation of Conditional Logistic Regression Models
Version: 1.0
Date: 2016-07-19
Author: Marius Kwemou <marius.kwemou@gmail.com> and Marta Avalos
Maintainer: Marius Kwemou <marius.kwemou@gmail.com>
Description: Fit a sequence of conditional logistic regression models with lasso, for small to large sized samples.
Imports: lassoshooting (>= 0.1.5)
Repository: CRAN
BugReports: https://github.com/kwemard/clogitLasso-BugReports
NeedsCompilation: no
LazyLoad: yes
License: GPL (>= 2)
Packaged: 2016-08-01 16:02:37 UTC; mkwemou
Date/Publication: 2016-08-01 19:13:04

More information about clogitLasso at CRAN
Permanent link

Package ttbbeer updated to version 1.1.0 with previous version 1.0.0 dated 2016-07-03

Title: US Beer Statistics from TTB
Description: U.S. Department of the Treasury, Alcohol and Tobacco Tax and Trade Bureau (TTB) collects data and reports on monthly beer industry production and operations. This data package includes a collection of 10 years (2006 - 2015) worth of data on materials used at U.S. breweries in pounds reported by the Brewer's Report of Operations and the Quarterly Brewer's Report of Operations forms, ready for data analysis. This package also includes historical tax rates on distilled spirits, wine, beer, champagne, and tobacco products as individual data sets.
Author: Jasmine Dumas [aut, cre]
Maintainer: Jasmine Dumas <jasmine.dumas@gmail.com>

Diff between ttbbeer versions 1.0.0 dated 2016-07-03 and 1.1.0 dated 2016-08-01

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Package SemiParSampleSel updated to version 1.4 with previous version 1.3 dated 2015-12-12

Title: Semi-Parametric Sample Selection Modelling with Continuous or Discrete Response
Description: Routine for fitting continuous or discrete response copula sample selection models with semi-parametric predictors, including linear and nonlinear effects.
Author: Giampiero Marra, Rosalba Radice, Malgorzata Wojtys and Karol Wyszynski
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>

Diff between SemiParSampleSel versions 1.3 dated 2015-12-12 and 1.4 dated 2016-08-01

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Package rehh updated to version 2.0.0 with previous version 1.13 dated 2015-05-13

Title: Searching for Footprints of Selection using Haplotype Homozygosity Based Tests
Description: Functions for the detection of footprints of selection on dense SNP data using Extended Homozygosity Haplotype (EHH) based tests. The package includes computation of EHH, iHS (within population) and Rsb or XP-EHH (across pairs of populations) statistics. Various plotting functions are also included to facilitate visualization and interpretation of the results.
Author: Mathieu Gautier, Alexander Klassmann and Renaud Vitalis
Maintainer: Mathieu Gautier <mathieu.gautier@supagro.inra.fr>

Diff between rehh versions 1.13 dated 2015-05-13 and 2.0.0 dated 2016-08-01

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More information about rehh at CRAN
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Package flexdashboard updated to version 0.3 with previous version 0.2.0 dated 2016-05-17

Title: R Markdown Format for Flexible Dashboards
Description: Format for converting an R Markdown document to a grid oriented dashboard. The dashboard flexibly adapts the size of it's components to the containing web page.
Author: JJ Allaire [aut, cre], RStudio [cph], Keen IO [ctb, cph] (Dashboard CSS), Abdullah Almsaeed [ctb, cph] (Dashboard CSS), Jonas Mosbech [ctb, cph] (StickyTableHeaders), Noel Bossart [ctb, cph] (Featherlight), Lea Verou [ctb, cph] (Prism), Dmitry Baranovskiy [ctb, cph] (Raphael.js), Sencha Labs [ctb, cph] (Raphael.js), Bojan Djuricic [ctb, cph] (JustGage), Tomas Sardyha [ctb, cph] (Sly), Bryan Lewis [ctb, cph] (Examples), Carson Sievert [ctb, cph] (Examples), Joshua Kunst [ctb, cph] (Examples), Ryan Hafen [ctb, cph] (Examples), Bob Rudis [ctb, cph] (Examples), Joe Cheng [ctb] (Examples)
Maintainer: JJ Allaire <jj@rstudio.com>

Diff between flexdashboard versions 0.2.0 dated 2016-05-17 and 0.3 dated 2016-08-01

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New package clusternomics with initial version 0.1.0
Package: clusternomics
Type: Package
Title: Integrative Clustering for Heterogeneous Biomedical Datasets
Version: 0.1.0
Authors@R: c(person("Evelina", "Gabasova", email="egabasova@gmail.com", role=c("aut", "cre")), person("John", "Reid", role="ctb"), person("Lorenz", "Wernisch", role="ctb"))
Description: Integrative context-dependent clustering for heterogeneous biomedical datasets. Identifies local clustering structures in related datasets, and a global clusters that exist across the datasets.
License: MIT + file LICENSE
LazyData: TRUE
Imports: magrittr, plyr, MASS
Suggests: knitr, rmarkdown, testthat, mclust, gplots, ggplot2
URL: https://github.com/evelinag/clusternomics
BugReports: https://github.com/evelinag/clusternomics/issues
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-01 13:49:41 UTC; evelina
Author: Evelina Gabasova [aut, cre], John Reid [ctb], Lorenz Wernisch [ctb]
Maintainer: Evelina Gabasova <egabasova@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-01 17:01:02

More information about clusternomics at CRAN
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Package vardpoor updated to version 0.7.2 with previous version 0.7.0 dated 2016-06-27

Title: Variance Estimation for Sample Surveys by the Ultimate Cluster Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre], Martins Liberts [aut], Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>

Diff between vardpoor versions 0.7.0 dated 2016-06-27 and 0.7.2 dated 2016-08-01

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More information about vardpoor at CRAN
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Package tutorial updated to version 0.4.1 with previous version 0.4.0 dated 2016-06-26

Title: Convert R Markdown Files to DataCamp Light HTML Files
Description: DataCamp Light (<https://github.com/datacamp/datacamp-light>) is a light-weight implementation of the DataCamp UI, that allows you to embed interactive exercises inside HTML documents. The tutorial package makes it easy to create these HTML files from R Markdown files. An extension to knitr, tutorial detects appropriately formatted code chunks and replaces them with DataCamp Light readable chunks in the resulting HTML file.
Author: Filip Schouwenaars
Maintainer: Filip Schouwenaars <filip@datacamp.com>

Diff between tutorial versions 0.4.0 dated 2016-06-26 and 0.4.1 dated 2016-08-01

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Package Morpho updated to version 2.4 with previous version 2.3.1.1 dated 2016-01-22

Title: Calculations and Visualisations Related to Geometric Morphometrics
Description: A toolset for Geometric Morphometrics and mesh processing. This includes (among other stuff) mesh deformations based on reference points, permutation tests, detection of outliers, processing of sliding semi-landmarks and semi-automated surface landmark placement.
Author: Stefan Schlager [aut, cre, cph], Gregory Jefferis [ctb]
Maintainer: Stefan Schlager <stefan.schlager@uniklinik-freiburg.de>

Diff between Morpho versions 2.3.1.1 dated 2016-01-22 and 2.4 dated 2016-08-01

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Permanent link

New package rtweet with initial version 0.1.0
Package: rtweet
Type: Package
Title: Collecting Twitter Data
Version: 0.1.0
Date: 2016-07-29
Author: Michael W. Kearney
Maintainer: Michael W. Kearney <mkearney@ku.edu>
Description: An implementation of calls designed to extract and organize Twitter data via Twitter's REST and stream API's. Functions formulate GET and POST requests and convert response objects to more user friendly structures, e.g., data frames or lists. Specific consideration is given to functions designed to return tweets, friends, and followers.
Depends: R (>= 3.1.0)
Imports: dplyr, httr, jsonlite
License: MIT + file LICENSE
LazyData: TRUE
URL: https://github.com/mkearney/rtweet/
BugReports: https://github.com/mkearney/rtweet/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-31 19:48:46 UTC; mwk
Repository: CRAN
Date/Publication: 2016-08-01 14:01:15

More information about rtweet at CRAN
Permanent link

Package MetaLandSim updated to version 0.5.3 with previous version 0.5.2 dated 2016-05-29

Title: Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species occurrence in dynamic landscapes, simulate future landscape occupation and evaluate range expansion when new empty patches are available (e.g. as a result of climate change).
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>

Diff between MetaLandSim versions 0.5.2 dated 2016-05-29 and 0.5.3 dated 2016-08-01

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More information about MetaLandSim at CRAN
Permanent link

New package lazyrmd with initial version 0.1.0
Package: lazyrmd
Title: Render R Markdown Outputs Lazily
Version: 0.1.0
Authors@R: c( person("Ryan", "Hafen", email = "rhafen@gmail.com", role = c("aut", "cre")), person("Barret", "Schloerke", email = "schloerke@gmail.com", role = c("ctb")), person("jQuery Foundation", role = c("ctb", "cph"), comment = "jQuery.js library"), person("Sourcey", role = c("ctb", "cph"), comment = "recliner.js library"))
Description: An R Markdown html document format that provides the ability to lazily load plot outputs as the user scrolls over them. This is useful for large R Markdown documents with many plots, as it allows for a fast initial page load and defers loading of individual graphics to the time that the user navigates near them.
Depends: R (>= 3.2.3)
License: MIT + file LICENSE
URL: http://github.com/hafen/lazyrmd
BugReports: https://github.com/hafen/lazyrmd/issues
Imports: knitr, rmarkdown, htmlwidgets, digest, htmltools
Suggests: testthat, networkD3
LazyData: true
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-01 00:19:10 UTC; barret
Author: Ryan Hafen [aut, cre], Barret Schloerke [ctb], jQuery Foundation [ctb, cph] (jQuery.js library), Sourcey [ctb, cph] (recliner.js library)
Maintainer: Ryan Hafen <rhafen@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-01 14:01:14

More information about lazyrmd at CRAN
Permanent link

Package edeaR updated to version 0.4.2 with previous version 0.4.1 dated 2016-06-02

Title: Exploratory and Descriptive Event-Based Data Analysis
Description: Functions for exploratory and descriptive analysis of event based data. Can be used to import and export Xes-files, the IEEE eXtensible Event Stream standard. Provides methods for describing and selecting process data, and for preparing event log data for process mining.
Author: Gert Janssenswillen
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>

Diff between edeaR versions 0.4.1 dated 2016-06-02 and 0.4.2 dated 2016-08-01

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Package Directional updated to version 2.2 with previous version 2.1 dated 2016-06-20

Title: Directional Statistics
Description: A collection of R functions for directional data analysis.
Author: Michail Tsagris, Giorgos Athineou, Anamul Sajib
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>

Diff between Directional versions 2.1 dated 2016-06-20 and 2.2 dated 2016-08-01

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More information about Directional at CRAN
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Package dynRB updated to version 0.8 with previous version 0.7 dated 2016-03-24

Title: Dynamic Range Boxes
Description: Improves the concept of multivariate range boxes, which is highly susceptible for outliers and does not consider the distribution of the data. The package uses dynamic range boxes to overcome these problems.
Author: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>, Wolfgang Trutschnig <Wolfgang.Trutschnig@sbg.ac.at>, Robert R. Junker <Robert.Junker@sbg.ac.at>, Jonas Kuppler <Jonas.Kuppler@uni-duesseldorf.de>, Arne Bathke <Arne.Bathke@sbg.ac.at>
Maintainer: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>

Diff between dynRB versions 0.7 dated 2016-03-24 and 0.8 dated 2016-08-01

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More information about dynRB at CRAN
Permanent link

Package denovolyzeR updated to version 0.2.0 with previous version 0.1.1 dated 2016-06-18

Title: Statistical Analyses of De Novo Genetic Variants
Description: An integrated toolset for the analysis of de novo (sporadic) genetic sequence variants. denovolyzeR implements a mutational model that estimates the probability of a de novo genetic variant arising in each human gene, from which one can infer the expected number of de novo variants in a given population size. Observed variant frequencies can then be compared against expectation in a Poisson framework. denovolyzeR provides a suite of functions to implement these analyses for the interpretation of de novo variation in human disease.
Author: James Ware [aut, cre], Jason Homsy [ctb], Kaitlin Samocha [ctb]
Maintainer: James Ware <j.ware@imperial.ac.uk>

Diff between denovolyzeR versions 0.1.1 dated 2016-06-18 and 0.2.0 dated 2016-08-01

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More information about denovolyzeR at CRAN
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Package Compositional updated to version 1.6 with previous version 1.5 dated 2016-07-10

Title: Compositional Data Analysis
Description: A collection of functions for compositional data analysis.
Author: Michail Tsagris [aut, cre], Giorgos Athineou [aut]
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>

Diff between Compositional versions 1.5 dated 2016-07-10 and 1.6 dated 2016-08-01

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Package BANOVA updated to version 0.6 with previous version 0.5 dated 2016-04-03

Title: Hierarchical Bayesian ANOVA Models
Description: It covers several Bayesian Analysis of Variance (BANOVA) models used in analysis of experimental designs in which both within- and between- subjects factors are manipulated. They can be applied to data that are common in the behavioral sciences and related fields. The package includes: Hierarchical Bayes ANOVA models with normal response, t response, Binomial(Bernoulli) response, Poisson response, ordered multinomial response and multinomial response variables. All models accommodate unobserved heterogeneity by including a normal distribution of the parameters across individuals. Outputs of the package include tables of sums of squares, effect sizes and p-values, and tables of means, which are easily interpretable for behavioral researchers. BANOVA uses JAGS as the computational platform.
Author: Chen Dong, Michel Wedel
Maintainer: Chen Dong <cdong@math.umd.edu>

Diff between BANOVA versions 0.5 dated 2016-04-03 and 0.6 dated 2016-08-01

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New package binford with initial version 0.1.0
Package: binford
Type: Package
Title: Binford's Hunter-Gatherer Data
Version: 0.1.0
Authors@R: c( person("Ben", "Marwick", email = "benmarwick@gmail.com", role = c("aut", "cre")), person("Amber", "Johnson", email = "ajohnson@truman.edu", role = "aut"), person("Doug", "White", email = "drwhite@uci.edu", role = "aut"), person("E. Anthon", "Eff", email = "Anthon.Eff@mtsu.edu", role = "aut") )
Description: Binford's hunter-gatherer data includes more than 200 variables coding aspects of hunter-gatherer subsistence, mobility, and social organization for 339 ethnographically documented groups of hunter-gatherers.
License: GPL-3
Depends: R (>= 3.1.0)
Suggests: dplyr
URL: http://github.com/benmarwick/binford
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-01 09:08:45 UTC; bmarwick
Author: Ben Marwick [aut, cre], Amber Johnson [aut], Doug White [aut], E. Anthon Eff [aut]
Maintainer: Ben Marwick <benmarwick@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-01 13:29:14

More information about binford at CRAN
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Package arulesSequences updated to version 0.2-16 with previous version 0.2-15 dated 2016-05-05

Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences. Provides interfaces to the C++ implementation of cSPADE by Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>

Diff between arulesSequences versions 0.2-15 dated 2016-05-05 and 0.2-16 dated 2016-08-01

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New package AntAngioCOOL with initial version 1.2
Package: AntAngioCOOL
Type: Package
Title: Anti-Angiogenic Peptide Prediction
Version: 1.2
Date: 2016-08-01
Author: Babak Khorsand <khorsand@yahoo.com>
Maintainer: Javad Zahiri <zahiri@modares.ac.ir>
Description: Machine learning based package to predict anti-angiogenic peptides using heterogeneous sequence descriptors. 'AntAngioCOOL' exploits five descriptor types of a peptide of interest to do prediction including: pseudo amino acid composition, k-mer composition, k-mer composition (reduced alphabet), physico-chemical profile and atomic profile. According to the obtained results, 'AntAngioCOOL' reached to a satisfactory performance in anti-angiogenic peptide prediction on a benchmark non-redundant independent test dataset.
License: GPL-2
RoxygenNote: 5.0.1
Depends: caret,rJava,RWeka,rpart, R(>= 2.10.0)
NeedsCompilation: no
Packaged: 2016-08-01 09:53:32 UTC; Babak
Repository: CRAN
Date/Publication: 2016-08-01 14:01:06

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Package surveyplanning updated to version 2.0 with previous version 1.8 dated 2016-07-04

Title: Survey Planning Tools
Description: Tools for sample survey planning, including sample size calculation, estimation of expected precision for the estimates of totals, and calculation of optimal sample size allocation.
Author: Juris Breidaks [aut, cre], Martins Liberts [aut], Janis Jukams [aut]
Maintainer: Juris Breidaks <rcsb@csb.gov.lv>

Diff between surveyplanning versions 1.8 dated 2016-07-04 and 2.0 dated 2016-08-01

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Package camtrapR updated to version 0.99.3 with previous version 0.99.2 dated 2016-06-24

Title: Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
Description: Management of and data extraction from camera trap photographs in wildlife studies. The package provides a workflow for storing and sorting camera trap photographs, computes record databases and detection/non-detection matrices for occupancy and spatial capture-recapture analyses with great flexibility. In addition, it provides simple mapping functions (number of species, number of independent species detections by station) and can visualise activity data.
Author: Juergen Niedballa [aut, cre], Alexandre Courtiol [aut], Rahel Sollmann [aut], John Mathai [ctb], Seth Timothy Wong [ctb], An The Truong Nguyen [ctb], Azlan bin Mohamed [ctb], Andrew Tilker [ctb], Andreas Wilting [ctb, ths]
Maintainer: Juergen Niedballa <niedballa@izw-berlin.de>

Diff between camtrapR versions 0.99.2 dated 2016-06-24 and 0.99.3 dated 2016-08-01

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Package brotli updated to version 0.8 with previous version 0.6 dated 2016-03-01

Title: A Compression Format Optimized for the Web
Description: A lossless compressed data format that uses a combination of the LZ77 algorithm and Huffman coding. Brotli is similar in speed to deflate (gzip) but offers more dense compression.
Author: Jeroen Ooms [aut, cre], Google, Inc [aut, cph] (Brotli C++ library)
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

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Package synergyfinder (with last version 0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-05-04 0.1

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