Title: Distance and Travel Time Between Two Points from Google Maps
Description: Get distance and travel time between two points from Google Maps.
Four possible modes of transportation (bicycling, walking, driving and
public transportation).
Author: Rodrigo Azuero Melo
Maintainer: Rodrigo Azuero Melo <rodazuero@gmail.com>
Diff between gmapsdistance versions 1.0 dated 2015-09-08 and 2.0 dated 2016-08-01
DESCRIPTION | 12 +- MD5 | 17 ++-- NAMESPACE | 4 R/gmapsdistance.R | 211 +++++++++++++++++++++++++++++---------------------- README.md | 93 ++++++++++------------ demo/example1.R | 4 demo/example2.R | 13 +-- man/get.api.key.Rd |only man/gmapsdistance.Rd | 66 ++++++--------- man/pkg.env.Rd |only man/set.api.key.Rd |only 11 files changed, 221 insertions(+), 199 deletions(-)
Title: Actual Evapotranspiration with Energy Balance Models
Description: Tools and functions to calculate actual evapotranspiration
using surface energy balance models.
Author: Guillermo Federico Olmedo [aut, cre], Samuel Ortega-Farias [aut],
David Fonseca-Luengo [aut], Daniel de la Fuente-Saiz [aut], Fernando Fuentes
Peñailillo [aut]
Maintainer: Guillermo Federico Olmedo <guillermo.olmedo@gmail.com>
Diff between water versions 0.3.2 dated 2016-05-04 and 0.5 dated 2016-08-01
water-0.3.2/water/README.md |only water-0.5/water/DESCRIPTION | 10 water-0.5/water/MD5 | 60 +-- water-0.5/water/NEWS | 26 + water-0.5/water/R/water_ET.R | 63 +++- water-0.5/water/R/water_METRIC.R | 24 + water-0.5/water/R/water_RSfunctions.R |only water-0.5/water/R/water_WeatherStation.R | 4 water-0.5/water/R/water_netRadiation.G.R | 279 +++++------------- water-0.5/water/R/water_sensibleHeatFlux.R | 399 +++++++++++++++++--------- water-0.5/water/build/vignette.rds |binary water-0.5/water/data/DEM_Talca.rda |binary water-0.5/water/data/L7_Talca.rda |binary water-0.5/water/inst/doc/METRIC_advanced.html | 70 ++-- water-0.5/water/inst/doc/METRIC_simple.html | 61 ++- water-0.5/water/man/DEM_Talca.Rd | 2 water-0.5/water/man/ET24h.Rd | 4 water-0.5/water/man/L7_Talca.Rd | 2 water-0.5/water/man/LAI.Rd | 3 water-0.5/water/man/METRIC.EB.Rd | 13 water-0.5/water/man/calcAnchors.Rd | 21 - water-0.5/water/man/calcH.Rd | 18 - water-0.5/water/man/calcSR.Rd | 2 water-0.5/water/man/calcTOAr.Rd | 2 water-0.5/water/man/dailyET.Rd | 14 water-0.5/water/man/hourlyET.Rd | 5 water-0.5/water/man/loadImage.Rd | 2 water-0.5/water/man/outLWradiation.Rd | 4 water-0.5/water/man/read.WSdata.Rd | 2 water-0.5/water/man/surfaceTemperature.Rd | 30 + water-0.5/water/vignettes/METRIC_advanced.Rmd | 28 - water-0.5/water/vignettes/METRIC_simple.Rmd | 15 32 files changed, 647 insertions(+), 516 deletions(-)
Title: A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets
Description: Creates visualizations of intersecting sets using a novel matrix
design, along with visualizations of several common set, element and attribute
related tasks.
Author: Jake Conway [cre],
Nils Gehlenborg [aut]
Maintainer: Jake Conway <jake_conway@student.uml.edu>
Diff between UpSetR versions 1.2.2 dated 2016-06-24 and 1.2.3 dated 2016-08-01
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS | 7 +++++++ R/upset.R | 15 ++++++++++----- inst/doc/attribute.plots.html | 10 +++++----- inst/doc/basic.usage.R | 3 +++ inst/doc/basic.usage.Rmd | 13 +++++++++++-- inst/doc/basic.usage.html | 38 ++++++++++++++++++++++++-------------- inst/doc/queries.html | 10 +++++----- inst/doc/set.metadata.plots.html | 38 +++++++++++++++++++------------------- man/upset.Rd | 4 +++- vignettes/basic.usage.Rmd | 13 +++++++++++-- 12 files changed, 113 insertions(+), 68 deletions(-)
Title: Waveband Definitions for 'UV', 'VIS', and 'IR' Radiation
Description: Constructors of waveband objects for commonly used biological
spectral weighting functions ('BSWFs') and for different wavebands describing
named ranges of wavelengths in the ultraviolet ('UV'), visible ('VIS')
and infrared ('IR') regions of the electromagnetic spectrum.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyWavebands versions 0.4.0 dated 2016-02-03 and 0.4.1 dated 2016-08-01
DESCRIPTION | 28 +++++++++++++++++----------- MD5 | 23 ++++++++++++----------- NEWS | 5 +++++ R/far.red.r | 5 ++--- R/pg.r | 2 +- README.md | 4 ++-- build/vignette.rds |binary inst/doc/dataplotswb.pdf |binary inst/doc/user-guide.pdf |binary inst/staticdocs |only man/Far_red.Rd | 5 ++--- man/PG.Rd | 2 +- man/photobiologyWavebands-package.Rd | 8 ++++---- 13 files changed, 46 insertions(+), 36 deletions(-)
More information about photobiologyWavebands at CRAN
Permanent link
Title: Forest Growth Model Utilities
Description: Growth models and forest production require existing data
manipulation and the creation of new data, structured from basic forest
inventory data. The purpose of this package is provide functions to support
these activities.
Author: Clayton Vieira Fraga Filho,
Ana Paula Simiqueli,
Gilson Fernandes da Silva,
Miqueias Fernandes,
Wagner Amorim da Silva Altoe
Maintainer: Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>
Diff between Fgmutils versions 0.6 dated 2016-07-09 and 0.7 dated 2016-08-01
DESCRIPTION | 10 +- MD5 | 6 - NEWS | 2 R/atualizaCampoBase.R | 197 ++++++++++++-------------------------------------- 4 files changed, 61 insertions(+), 154 deletions(-)
Title: 'Rcpp' Interface for Querying System Configuration Variables
Description: The 'getconf' command-line tool provided by 'libc' allows
querying of a large number of system variables. This package provides
similar functionality.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppGetconf versions 0.0.1 dated 2016-07-28 and 0.0.2 dated 2016-08-01
ChangeLog | 17 + DESCRIPTION | 14 MD5 | 16 - R/RcppExports.R | 27 + README.md | 27 + inst |only man/getAll.Rd | 5 man/getConfig.Rd |only src/RcppExports.cpp | 12 src/getconf.cpp | 805 +++++++++++++++++++++++++++++++++++++++++++++++----- 10 files changed, 828 insertions(+), 95 deletions(-)
Title: Hidden Markov Models for Life Sequences and Other Multivariate,
Multichannel Categorical Time Series
Description: Designed for fitting hidden (latent)
Markov models and mixture hidden Markov models for social
sequence data and other categorical time series. Also some more restricted
versions of these type of models are available: Markov models, mixture
Markov models, and latent class models. The package supports models for one or
multiple subjects with one or multiple parallel sequences (channels). External
covariates can be added to explain cluster membership in mixture models. The
package provides functions for evaluating and comparing models, as well as
functions for easy plotting of multichannel sequence data and hidden Markov
models. Models are estimated using maximum likelihood via the EM algorithm and/or
direct numerical maximization with analytical gradients.
All main algorithms are written in C++ with support for parallel computation.
Author: Jouni Helske, Satu Helske
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Diff between seqHMM versions 1.0.5 dated 2016-02-24 and 1.0.6 dated 2016-08-01
DESCRIPTION | 8 MD5 | 200 ++-- NAMESPACE | 1 NEWS | 132 +-- R/HMMplot.R | 844 ++++++++++---------- R/RcppExports.R | 80 + R/SSPlotter.R | 878 ++++++++++----------- R/build_hmm.R | 552 ++++++------- R/build_lcm.R | 596 +++++++------- R/build_mhmm.R | 842 ++++++++++---------- R/build_mm.R | 218 ++--- R/build_mmm.R | 414 +++++----- R/colorpalette.R | 56 - R/estimate_coef.R |only R/fit_model.R | 51 - R/forwardBackward.R | 184 ++-- R/gridplot.R | 1344 ++++++++++++++++---------------- R/help_data.R | 182 ++-- R/hidden_paths.R | 220 ++--- R/mHMMplotgrid.R | 622 +++++++-------- R/mHMMplotint.R | 220 ++--- R/mc_to_sc.R | 454 +++++------ R/mhmm_biofam.R | 330 ++++---- R/mhmm_mvad.R | 180 ++-- R/mssplot.R | 96 +- R/plot.hmm.R | 1166 ++++++++++++++-------------- R/plot.mhmm.R | 392 ++++----- R/plot.ssp.R | 86 +- R/posterior_probs.R | 60 - R/separate_mhmm.R | 80 - R/seqHMM-package.R | 70 - R/simulate_hmm.R | 300 +++---- R/simulate_mhmm.R | 518 ++++++------ R/simulate_pars.R | 158 +-- R/ssp.R | 1394 ++++++++++++++++----------------- R/ssplot.R | 486 +++++------ R/ssplotM.R | 40 R/summary.mhmm.R | 224 ++--- R/trim_hmm.R | 562 ++++++------- R/vcov.mhmm.R | 344 ++++---- build/vignette.rds |binary data/biofam3c.rda |binary data/colorpalette.rda |binary data/hmm_biofam.rda |binary data/hmm_mvad.rda |binary data/mhmm_biofam.rda |binary data/mhmm_mvad.rda |binary inst/doc/seqHMM.Rnw | 1772 +++++++++++++++++++++---------------------- inst/doc/seqHMM.pdf |binary man/biofam3c.Rd | 338 ++++---- man/build_hmm.Rd | 324 +++---- man/build_mhmm.Rd | 446 +++++----- man/build_mmm.Rd | 214 ++--- man/colorpalette.Rd | 62 - man/estimate_coef.Rd |only man/fit_model.Rd | 23 man/gridplot.Rd | 280 +++--- man/mc_to_sc.Rd | 104 +- man/mhmm_biofam.Rd | 330 ++++---- man/mhmm_mvad.Rd | 180 ++-- man/mssplot.Rd | 376 ++++----- man/plot.hmm.Rd | 482 +++++------ man/plot.mhmm.Rd | 408 ++++----- man/plot.ssp.Rd | 86 +- man/separate_mhmm.Rd | 74 - man/seqHMM-deprecated.Rd | 240 ++--- man/simulate_pars.Rd | 8 man/ssp.Rd | 488 +++++------ man/ssplot.Rd | 472 +++++------ man/summary.mhmm.Rd | 128 +-- man/trim_model.Rd | 86 +- src/EM.cpp | 222 ++--- src/EMx.cpp | 250 +++--- src/RcppExports.cpp | 374 ++++----- src/forwardbackward.cpp | 11 src/forwardbackwardx.cpp | 12 src/internalBackward.cpp | 8 src/internalForward.cpp | 18 src/logLikHMM.cpp | 12 src/logLikMixHMM.cpp | 16 src/logSumExp.cpp | 10 src/log_EM.cpp | 24 src/log_EMx.cpp | 33 src/log_forwardbackward.cpp | 11 src/log_forwardbackwardx.cpp | 14 src/log_internalBackward.cpp | 8 src/log_internalForward.cpp | 8 src/log_logLikHMM.cpp | 22 src/log_logLikMixHMM.cpp | 26 src/log_objective.cpp | 17 src/log_objectivex.cpp | 36 src/log_optCoef.cpp | 8 src/objective.cpp | 255 +++--- src/objectivex.cpp | 298 +++---- src/optCoef.cpp | 23 src/reparma.cpp | 4 src/sa_opt_coef.cpp |only src/seqHMM.h | 65 - src/uv_forwardbackward.cpp |only src/viterbi.cpp | 17 src/viterbix.cpp | 16 vignettes/references.bib | 1054 ++++++++++++------------- vignettes/seqHMM.Rnw | 1772 +++++++++++++++++++++---------------------- 103 files changed, 13122 insertions(+), 13027 deletions(-)
Title: R Markdown Format for 'reveal.js' Presentations
Description: R Markdown format for 'reveal.js' presentations, a framework
for easily creating beautiful presentations using HTML.
Author: Hakim El Hattab [aut, cph] (reveal.js-3.2.0,
https://github.com/hakimel/reveal.js),
JJ Allaire [aut, cre],
RStudio [cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between revealjs versions 0.6 dated 2016-03-08 and 0.7 dated 2016-08-01
revealjs-0.6/revealjs/inst/reveal.js-3.2.0 |only revealjs-0.7/revealjs/DESCRIPTION | 8 revealjs-0.7/revealjs/MD5 | 222 +++++----- revealjs-0.7/revealjs/R/revealjs_presentation.R | 38 + revealjs-0.7/revealjs/inst/NEWS | 15 revealjs-0.7/revealjs/inst/reveal.js-3.3.0 |only revealjs-0.7/revealjs/inst/rmarkdown/templates/revealjs_presentation/resources/default.html | 12 revealjs-0.7/revealjs/man/revealjs_presentation.Rd | 21 8 files changed, 187 insertions(+), 129 deletions(-)
Title: 'Photobiological' Calculations
Description: Definitions of classes, methods, operators and functions for use in
'photobiology' and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted 'irradiances'/doses, 'fluence' rates,
'transmittance', 'reflectance', 'absorptance', 'absorbance' and diverse
ratios and other derived quantities from spectral data. Local 'maxima' and
'minima'. Conversion between energy- and photon-based units. Wavelength
interpolation. Astronomical calculations related solar angles and day
length. Colours and vision.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.9.8 dated 2016-05-19 and 0.9.9 dated 2016-08-01
photobiology-0.9.8/photobiology/inst/doc/userguide.Rnw |only photobiology-0.9.8/photobiology/inst/doc/userguide.pdf |only photobiology-0.9.8/photobiology/vignettes/framed.sty |only photobiology-0.9.8/photobiology/vignettes/userguide-concordance.tex |only photobiology-0.9.8/photobiology/vignettes/userguide.Rnw |only photobiology-0.9.9/photobiology/DESCRIPTION | 25 photobiology-0.9.9/photobiology/MD5 | 78 +- photobiology-0.9.9/photobiology/NEWS | 17 photobiology-0.9.9/photobiology/R/beesxyz.data.r | 10 photobiology-0.9.9/photobiology/R/ciexyz.data.r | 18 photobiology-0.9.9/photobiology/R/insert.hinges.r | 2 photobiology-0.9.9/photobiology/R/mspct.methods.R | 2 photobiology-0.9.9/photobiology/R/oper.spectra.r | 4 photobiology-0.9.9/photobiology/R/photobiology.r | 2 photobiology-0.9.9/photobiology/R/rbindspct.r | 17 photobiology-0.9.9/photobiology/R/spct.absorptance.R | 6 photobiology-0.9.9/photobiology/R/spct.classes.r | 22 photobiology-0.9.9/photobiology/R/spct.integrate.r | 4 photobiology-0.9.9/photobiology/R/spct.new.r | 60 - photobiology-0.9.9/photobiology/R/spct.operators.r | 4 photobiology-0.9.9/photobiology/R/spct.ratios.R | 2 photobiology-0.9.9/photobiology/R/spct.tag.r | 6 photobiology-0.9.9/photobiology/R/spct.trim.r | 8 photobiology-0.9.9/photobiology/R/sun.calc.r | 6 photobiology-0.9.9/photobiology/R/trim.tails.r | 2 photobiology-0.9.9/photobiology/README.md | 15 photobiology-0.9.9/photobiology/build/vignette.rds |binary photobiology-0.9.9/photobiology/inst/doc/userguide.R | 384 ++++------ photobiology-0.9.9/photobiology/inst/doc/userguide.Rmd |only photobiology-0.9.9/photobiology/inst/doc/userguide.html |only photobiology-0.9.9/photobiology/inst/staticdocs |only photobiology-0.9.9/photobiology/man/beesxyzCMF.spct.Rd | 9 photobiology-0.9.9/photobiology/man/ciev10.spct.Rd | 3 photobiology-0.9.9/photobiology/man/ciev2.spct.Rd | 3 photobiology-0.9.9/photobiology/man/ciexyzCC10.spct.Rd | 3 photobiology-0.9.9/photobiology/man/ciexyzCC2.spct.Rd | 3 photobiology-0.9.9/photobiology/man/ciexyzCMF10.spct.Rd | 3 photobiology-0.9.9/photobiology/man/ciexyzCMF2.spct.Rd | 3 photobiology-0.9.9/photobiology/man/extract.Rd | 2 photobiology-0.9.9/photobiology/man/getWhenMeasured.Rd | 2 photobiology-0.9.9/photobiology/man/photobiology-package.Rd | 2 photobiology-0.9.9/photobiology/man/source_spct.Rd | 2 photobiology-0.9.9/photobiology/man/v_insert_hinges.Rd | 2 photobiology-0.9.9/photobiology/vignettes/userguide.Rmd |only 44 files changed, 371 insertions(+), 360 deletions(-)
Title: High Dimensional Supervised Classification and Clustering
Description: Discriminant analysis and data clustering methods for high
dimensional data, based on the assumption that high-dimensional data live in
different subspaces with low dimensionality proposing a new parametrization of
the Gaussian mixture model which combines the ideas of dimension reduction and
constraints on the model.
Author: Laurent Berge, Charles Bouveyron and Stephane Girard
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between HDclassif versions 1.3 dated 2015-07-01 and 2.0 dated 2016-08-01
HDclassif-1.3/HDclassif/R/hdclassif.R |only HDclassif-2.0/HDclassif/ChangeLog | 14 + HDclassif-2.0/HDclassif/DESCRIPTION | 16 +- HDclassif-2.0/HDclassif/MD5 | 25 +-- HDclassif-2.0/HDclassif/NAMESPACE | 7 HDclassif-2.0/HDclassif/R/controls.R |only HDclassif-2.0/HDclassif/R/demo.R |only HDclassif-2.0/HDclassif/R/hdc.R |only HDclassif-2.0/HDclassif/R/hdda.R |only HDclassif-2.0/HDclassif/R/hddc.R |only HDclassif-2.0/HDclassif/demo/hddc.r | 2 HDclassif-2.0/HDclassif/man/hdda.Rd | 156 +++++++++----------- HDclassif-2.0/HDclassif/man/hddc.Rd | 197 +++++++++++++------------- HDclassif-2.0/HDclassif/man/hdmda.Rd | 2 HDclassif-2.0/HDclassif/man/plot.hdc.Rd | 4 HDclassif-2.0/HDclassif/man/predict.hdc.Rd | 6 HDclassif-2.0/HDclassif/man/slopeHeuristic.Rd |only 17 files changed, 225 insertions(+), 204 deletions(-)
Title: Interface to 'Dygraphs' Interactive Time Series Charting Library
Description: An R interface to the 'dygraphs' JavaScript charting library
(a copy of which is included in the package). Provides rich facilities
for charting time-series data in R, including highly configurable
series- and axis-display and interactive features like zoom/pan and
series/point highlighting.
Author: Dan Vanderkam [aut, cph] (dygraphs library in htmlwidgets/lib,
http://dygraphs.com/),
JJ Allaire [aut, cre] (R interface),
RStudio [cph],
Jonathan Owen [aut, cph],
Daniel Gromer [aut, cph],
Petr Shevtsov [aut, cph],
Benoit Thieurmel [aut, cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/htmlwidgets/lib/jquery/AUTHORS.txt)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between dygraphs versions 0.9 dated 2016-04-24 and 1.1.1.0 dated 2016-08-01
DESCRIPTION | 10 MD5 | 21 NAMESPACE | 2 R/dygraph.R | 7 R/event.R | 6 R/plugin.R |only R/utils.R | 2 inst/NEWS | 15 inst/examples/plugins |only inst/htmlwidgets/dygraphs.js | 1285 +++++++++++++++++++++---------------------- man/dyPlugin.Rd |only man/dygraph.Rd | 6 12 files changed, 707 insertions(+), 647 deletions(-)
Title: Efficient Effect Size Computation
Description: A collection of functions to compute the standardized
effect sizes for experiments (Cohen d, Hedges g, Cliff delta, Vargha-Delaney A).
The computation algorithms have been optimized to allow efficient computation even
with very large data sets.
Author: Marco Torchiano [aut, cre]
Maintainer: Marco Torchiano <marco.torchiano@polito.it>
Diff between effsize versions 0.6.2 dated 2016-03-31 and 0.6.4 dated 2016-08-01
effsize-0.6.2/effsize/tests/testCliff.R |only effsize-0.6.2/effsize/tests/testCliff.Rout.save |only effsize-0.6.2/effsize/tests/testCohenD.R |only effsize-0.6.2/effsize/tests/testCohenD.Rout.save |only effsize-0.6.4/effsize/DESCRIPTION | 9 ++-- effsize-0.6.4/effsize/MD5 | 17 ++++---- effsize-0.6.4/effsize/R/CohenD.R | 45 +++++++++++++---------- effsize-0.6.4/effsize/R/VD_A.R | 2 - effsize-0.6.4/effsize/man/cohen.d.Rd | 12 +++++- effsize-0.6.4/effsize/man/effsize-package.Rd | 1 effsize-0.6.4/effsize/tests/testthat |only effsize-0.6.4/effsize/tests/testthat.R |only 12 files changed, 52 insertions(+), 34 deletions(-)
Title: US Beer Statistics from TTB
Description: U.S. Department of the Treasury, Alcohol and Tobacco Tax and
Trade Bureau (TTB) collects data and reports on monthly beer
industry production and operations. This data package includes
a collection of 10 years (2006 - 2015) worth of data on materials
used at U.S. breweries in pounds reported by the Brewer's Report
of Operations and the Quarterly Brewer's Report of Operations
forms, ready for data analysis. This package also includes historical
tax rates on distilled spirits, wine, beer, champagne, and tobacco
products as individual data sets.
Author: Jasmine Dumas [aut, cre]
Maintainer: Jasmine Dumas <jasmine.dumas@gmail.com>
Diff between ttbbeer versions 1.0.0 dated 2016-07-03 and 1.1.0 dated 2016-08-01
DESCRIPTION | 10 ++++++---- MD5 | 38 ++++++++++++++++++++++++++++++++------ NEWS.md | 11 +++++++++++ R/artificialcarbontax.R |only R/beermaterials.R | 6 +++--- R/beertax.R |only R/champagnetax.R |only R/globalVariables.R | 6 +++++- R/spirittax.R |only R/tobaccotax.R |only R/ttbbeer.R |only R/winetax14.R |only R/winetax1421.R |only R/winetax2124.R |only README.md | 22 +++++++++++++++++----- data/artificialcarbontax.rda |only data/beertax.rda |only data/champagnetax.rda |only data/spirittax.rda |only data/tobaccotax.rda |only data/winetax14.rda |only data/winetax1421.rda |only data/winetax2124.rda |only man/artificialcarbontax.Rd |only man/beermaterials.Rd | 9 ++++----- man/beertax.Rd |only man/champagnetax.Rd |only man/spirittax.Rd |only man/tobaccotax.Rd |only man/ttbbeer.Rd |only man/winetax14.Rd |only man/winetax1421.Rd |only man/winetax2124.Rd |only 33 files changed, 78 insertions(+), 24 deletions(-)
Title: Semi-Parametric Sample Selection Modelling with Continuous or
Discrete Response
Description: Routine for fitting continuous or discrete response copula sample selection models with semi-parametric predictors, including linear and nonlinear effects.
Author: Giampiero Marra, Rosalba Radice, Malgorzata Wojtys and Karol Wyszynski
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between SemiParSampleSel versions 1.3 dated 2015-12-12 and 1.4 dated 2016-08-01
ChangeLog | 3 DESCRIPTION | 13 MD5 | 12 NAMESPACE | 4 R/SemiParSampleSel.r | 4 R/summary.SemiParSampleSel.r | 1412 +++++++++++++++++++++---------------------- inst/CITATION | 33 - 7 files changed, 757 insertions(+), 724 deletions(-)
More information about SemiParSampleSel at CRAN
Permanent link
Title: Searching for Footprints of Selection using Haplotype
Homozygosity Based Tests
Description: Functions for the detection of footprints of selection on
dense SNP data using Extended Homozygosity Haplotype (EHH)
based tests. The package includes computation of EHH, iHS
(within population) and Rsb or XP-EHH (across pairs of populations)
statistics. Various plotting functions are also included to
facilitate visualization and interpretation of the results.
Author: Mathieu Gautier, Alexander Klassmann and Renaud Vitalis
Maintainer: Mathieu Gautier <mathieu.gautier@supagro.inra.fr>
Diff between rehh versions 1.13 dated 2015-05-13 and 2.0.0 dated 2016-08-01
rehh-1.13/rehh/src/ehh_utils.c |only rehh-1.13/rehh/src/ehh_utils.h |only rehh-1.13/rehh/src/r_ehh.c |only rehh-1.13/rehh/src/r_ehhs.c |only rehh-1.13/rehh/src/r_scan_hh.c |only rehh-2.0.0/rehh/ChangeLog | 8 rehh-2.0.0/rehh/DESCRIPTION | 12 rehh-2.0.0/rehh/MD5 | 88 rehh-2.0.0/rehh/NAMESPACE | 7 rehh-2.0.0/rehh/R/calc_ehh.R | 96 rehh-2.0.0/rehh/R/calc_ehhs.R | 97 rehh-2.0.0/rehh/R/data2haplohh.R | 123 rehh-2.0.0/rehh/R/distribplot.R | 21 rehh-2.0.0/rehh/R/ies2rsb.R | 41 rehh-2.0.0/rehh/R/ies2xpehh.R |only rehh-2.0.0/rehh/R/ihh2ihs.R | 86 rehh-2.0.0/rehh/R/ihsplot.R | 88 rehh-2.0.0/rehh/R/rsbplot.R | 106 rehh-2.0.0/rehh/R/scan_hh.R | 57 rehh-2.0.0/rehh/R/xpehhplot.R |only rehh-2.0.0/rehh/build |only rehh-2.0.0/rehh/data/haplohh_cgu_bta12.RData |binary rehh-2.0.0/rehh/data/wgscan.cgu.RData |binary rehh-2.0.0/rehh/data/wgscan.eut.RData |binary rehh-2.0.0/rehh/inst/CITATION | 18 rehh-2.0.0/rehh/inst/bta12_cgu.hap | 560 rehh-2.0.0/rehh/inst/bta12_cgu.thap |only rehh-2.0.0/rehh/inst/bta12_hapguess_switch.out | 1260 rehh-2.0.0/rehh/inst/doc |only rehh-2.0.0/rehh/inst/map.inp |88114 ++++++++++++------------- rehh-2.0.0/rehh/man/calc_ehh.Rd | 26 rehh-2.0.0/rehh/man/calc_ehhs.Rd | 25 rehh-2.0.0/rehh/man/data2haplohh.Rd | 24 rehh-2.0.0/rehh/man/distribplot.Rd | 18 rehh-2.0.0/rehh/man/haplohh-class.Rd | 2 rehh-2.0.0/rehh/man/ies2rsb.Rd | 2 rehh-2.0.0/rehh/man/ies2xpehh.Rd |only rehh-2.0.0/rehh/man/ihh2ihs.Rd | 6 rehh-2.0.0/rehh/man/ihsplot.Rd | 19 rehh-2.0.0/rehh/man/rehh-package.Rd | 12 rehh-2.0.0/rehh/man/rsbplot.Rd | 16 rehh-2.0.0/rehh/man/scan_hh.Rd | 15 rehh-2.0.0/rehh/man/wgscan.cgu.Rd | 2 rehh-2.0.0/rehh/man/wgscan.eut.Rd | 4 rehh-2.0.0/rehh/man/xpehhplot.Rd |only rehh-2.0.0/rehh/src/CALL_EHH.c |only rehh-2.0.0/rehh/src/CALL_EHHS.c |only rehh-2.0.0/rehh/src/CALL_SCAN_HH.c |only rehh-2.0.0/rehh/src/Makevars |only rehh-2.0.0/rehh/src/hh_utils.c |only rehh-2.0.0/rehh/src/hh_utils.h |only rehh-2.0.0/rehh/vignettes |only 52 files changed, 45631 insertions(+), 45322 deletions(-)
Title: R Markdown Format for Flexible Dashboards
Description: Format for converting an R Markdown document to a grid oriented
dashboard. The dashboard flexibly adapts the size of it's components to the
containing web page.
Author: JJ Allaire [aut, cre],
RStudio [cph],
Keen IO [ctb, cph] (Dashboard CSS),
Abdullah Almsaeed [ctb, cph] (Dashboard CSS),
Jonas Mosbech [ctb, cph] (StickyTableHeaders),
Noel Bossart [ctb, cph] (Featherlight),
Lea Verou [ctb, cph] (Prism),
Dmitry Baranovskiy [ctb, cph] (Raphael.js),
Sencha Labs [ctb, cph] (Raphael.js),
Bojan Djuricic [ctb, cph] (JustGage),
Tomas Sardyha [ctb, cph] (Sly),
Bryan Lewis [ctb, cph] (Examples),
Carson Sievert [ctb, cph] (Examples),
Joshua Kunst [ctb, cph] (Examples),
Ryan Hafen [ctb, cph] (Examples),
Bob Rudis [ctb, cph] (Examples),
Joe Cheng [ctb] (Examples)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between flexdashboard versions 0.2.0 dated 2016-05-17 and 0.3 dated 2016-08-01
DESCRIPTION | 8 MD5 | 11 - R/flex_dashboard.R | 87 +++++----- inst/NEWS |only inst/rmarkdown/templates/flex_dashboard/resources/default.html | 8 inst/rmarkdown/templates/flex_dashboard/resources/flexdashboard.css | 1 inst/rmarkdown/templates/flex_dashboard/resources/flexdashboard.js | 29 ++- 7 files changed, 90 insertions(+), 54 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.7.0 dated 2016-06-27 and 0.7.2 dated 2016-08-01
DESCRIPTION | 10 +- MD5 | 34 +++---- NAMESPACE | 1 R/domain.R | 2 R/var_srs.R | 17 --- R/vardcrospoor.R | 6 - R/vardom.R | 74 +++++++++------- R/vardom_othstr.R | 10 +- R/vardomh.R | 104 ++++++++++++----------- R/varpoord.R | 212 ++++++++++++++++++------------------------------ inst/CITATION | 4 inst/NEWS | 6 + man/var_srs.Rd | 7 + man/vardcrospoor.Rd | 2 man/vardom.Rd | 3 man/vardomh.Rd | 3 man/vardpoor-package.Rd | 30 ++---- man/varpoord.Rd | 4 18 files changed, 250 insertions(+), 279 deletions(-)
Title: Convert R Markdown Files to DataCamp Light HTML Files
Description: DataCamp Light (<https://github.com/datacamp/datacamp-light>) is a light-weight implementation of the DataCamp UI,
that allows you to embed interactive exercises inside HTML documents. The tutorial package makes it easy to create these
HTML files from R Markdown files. An extension to knitr, tutorial detects appropriately formatted code chunks and replaces them
with DataCamp Light readable chunks in the resulting HTML file.
Author: Filip Schouwenaars
Maintainer: Filip Schouwenaars <filip@datacamp.com>
Diff between tutorial versions 0.4.0 dated 2016-06-26 and 0.4.1 dated 2016-08-01
DESCRIPTION | 7 +- MD5 | 18 +++--- R/hooks.R | 122 +++++++++++++++++++----------------------- R/render.R | 22 +++---- R/utils.R | 37 ------------ README.md | 23 +++++++ inst/doc/tutorial-basics.html | 20 +++--- inst/example.html | 12 ++-- man/go_interactive.Rd | 2 tests/testthat/test-render.R | 2 10 files changed, 120 insertions(+), 145 deletions(-)
Title: Calculations and Visualisations Related to Geometric
Morphometrics
Description: A toolset for Geometric Morphometrics and mesh processing. This
includes (among other stuff) mesh deformations based on reference points,
permutation tests, detection of outliers, processing of sliding
semi-landmarks and semi-automated surface landmark placement.
Author: Stefan Schlager [aut, cre, cph],
Gregory Jefferis [ctb]
Maintainer: Stefan Schlager <stefan.schlager@uniklinik-freiburg.de>
Diff between Morpho versions 2.3.1.1 dated 2016-01-22 and 2.4 dated 2016-08-01
Morpho-2.3.1.1/Morpho/src/Makevars.win |only Morpho-2.4/Morpho/DESCRIPTION | 14 Morpho-2.4/Morpho/MD5 | 181 +++++---- Morpho-2.4/Morpho/NAMESPACE | 9 Morpho-2.4/Morpho/R/CVA.crova.r | 51 +- Morpho-2.4/Morpho/R/CVA.r | 67 +-- Morpho-2.4/Morpho/R/CVAdists.r | 2 Morpho-2.4/Morpho/R/ComputeTransform.r | 19 Morpho-2.4/Morpho/R/CreateL.r | 100 +---- Morpho-2.4/Morpho/R/Morpho-package.R | 7 Morpho-2.4/Morpho/R/ProcGPA.r | 2 Morpho-2.4/Morpho/R/Semislide.r | 4 Morpho-2.4/Morpho/R/ang.r | 8 Morpho-2.4/Morpho/R/applyTransform.r | 18 Morpho-2.4/Morpho/R/asymPermu.r | 4 Morpho-2.4/Morpho/R/check.lm.r | 2 Morpho-2.4/Morpho/R/classify.r | 10 Morpho-2.4/Morpho/R/conv2backf.r | 2 Morpho-2.4/Morpho/R/covDist.r | 1 Morpho-2.4/Morpho/R/deform.grid.r | 12 Morpho-2.4/Morpho/R/deformGrid2d.r | 7 Morpho-2.4/Morpho/R/equidistantCurve.r |only Morpho-2.4/Morpho/R/fastKmeans.r |only Morpho-2.4/Morpho/R/fiducials.r |only Morpho-2.4/Morpho/R/find.outliers.r | 54 ++ Morpho-2.4/Morpho/R/fixLMmirror.r | 35 + Morpho-2.4/Morpho/R/fixLMtps.r | 4 Morpho-2.4/Morpho/R/fx.r | 16 Morpho-2.4/Morpho/R/groupPCA.r | 20 - Morpho-2.4/Morpho/R/mcNNindex.r | 65 +-- Morpho-2.4/Morpho/R/meshDist.r | 18 Morpho-2.4/Morpho/R/meshDistMatrix.r | 6 Morpho-2.4/Morpho/R/meshPlaneIntersect.r | 2 Morpho-2.4/Morpho/R/mirror.r | 14 Morpho-2.4/Morpho/R/pcAlign.r | 12 Morpho-2.4/Morpho/R/place.patch.r | 10 Morpho-2.4/Morpho/R/pls2B.r | 249 ++++++------- Morpho-2.4/Morpho/R/prcompfast.r |only Morpho-2.4/Morpho/R/procAOVsym.r | 71 +-- Morpho-2.4/Morpho/R/procSym.r | 10 Morpho-2.4/Morpho/R/quad2trimesh.r | 2 Morpho-2.4/Morpho/R/read.lmdta.r | 3 Morpho-2.4/Morpho/R/relax.lm.r | 44 +- Morpho-2.4/Morpho/R/relwarps.r | 22 - Morpho-2.4/Morpho/R/retrodeform.r | 12 Morpho-2.4/Morpho/R/showPC.r | 4 Morpho-2.4/Morpho/R/slider3d.r | 158 ++++++-- Morpho-2.4/Morpho/R/tps3d.r | 16 Morpho-2.4/Morpho/R/typprob.r | 121 +++--- Morpho-2.4/Morpho/R/vecx.r | 1 Morpho-2.4/Morpho/R/warpmovie.matrix.r | 8 Morpho-2.4/Morpho/R/warpmovie.r | 2 Morpho-2.4/Morpho/inst/NEWS.Rd | 58 +++ Morpho-2.4/Morpho/man/CVA.Rd | 11 Morpho-2.4/Morpho/man/CreateL.Rd | 10 Morpho-2.4/Morpho/man/Morpho-package.Rd | 4 Morpho-2.4/Morpho/man/ProcGPA.Rd | 2 Morpho-2.4/Morpho/man/applyTransform.Rd | 13 Morpho-2.4/Morpho/man/asymPermute.Rd | 2 Morpho-2.4/Morpho/man/checkLM.Rd | 2 Morpho-2.4/Morpho/man/computeTransform.Rd | 18 Morpho-2.4/Morpho/man/covW.Rd | 8 Morpho-2.4/Morpho/man/deformGrid2d.Rd | 4 Morpho-2.4/Morpho/man/deformGrid3d.Rd | 12 Morpho-2.4/Morpho/man/equidistantCurve.Rd |only Morpho-2.4/Morpho/man/fastKmeans.Rd |only Morpho-2.4/Morpho/man/find.outliers.Rd | 4 Morpho-2.4/Morpho/man/fixLMmirror.Rd | 10 Morpho-2.4/Morpho/man/groupPCA.Rd | 8 Morpho-2.4/Morpho/man/mcNNindex.Rd | 15 Morpho-2.4/Morpho/man/meshDist.Rd | 8 Morpho-2.4/Morpho/man/mirror.Rd | 4 Morpho-2.4/Morpho/man/placePatch.Rd | 2 Morpho-2.4/Morpho/man/plot.slider3d.Rd |only Morpho-2.4/Morpho/man/prcompfast.Rd |only Morpho-2.4/Morpho/man/procSym.Rd | 2 Morpho-2.4/Morpho/man/read.fcsv.Rd |only Morpho-2.4/Morpho/man/relWarps.Rd | 4 Morpho-2.4/Morpho/man/relaxLM.Rd | 11 Morpho-2.4/Morpho/man/retroDeform3d.Rd | 2 Morpho-2.4/Morpho/man/retroDeformMesh.Rd | 6 Morpho-2.4/Morpho/man/slider3d.Rd | 38 + Morpho-2.4/Morpho/man/sortCurve.Rd |only Morpho-2.4/Morpho/man/tps3d.Rd | 12 Morpho-2.4/Morpho/man/typprob.Rd | 9 Morpho-2.4/Morpho/man/warpmovie3d.Rd | 6 Morpho-2.4/Morpho/man/write.fcsv.Rd |only Morpho-2.4/Morpho/src/CVAdists.cpp | 4 Morpho-2.4/Morpho/src/Makevars | 3 Morpho-2.4/Morpho/src/ang_calc.cpp | 19 Morpho-2.4/Morpho/src/asymPerm.cpp | 5 Morpho-2.4/Morpho/src/createL.cpp | 16 Morpho-2.4/Morpho/src/fastSubsetMeans.cpp |only Morpho-2.4/Morpho/src/permudistArma.cpp | 4 Morpho-2.4/Morpho/src/tpsfx.cpp | 46 +- Morpho-2.4/Morpho/tests/testthat/test-CVA.r |only Morpho-2.4/Morpho/tests/testthat/test-pls2B.r |only Morpho-2.4/Morpho/tests/testthat/test-slider3d.r |only Morpho-2.4/Morpho/tests/testthat/testdata/CVA.rds |only Morpho-2.4/Morpho/tests/testthat/testdata/pls-baseline.rds |only Morpho-2.4/Morpho/tests/testthat/testdata/slider3d.rds |only 101 files changed, 1123 insertions(+), 758 deletions(-)
Title: Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species
occurrence in dynamic landscapes, simulate future landscape occupation and
evaluate range expansion when new empty patches are available (e.g. as a
result of climate change).
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro
Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>
Diff between MetaLandSim versions 0.5.2 dated 2016-05-29 and 0.5.3 dated 2016-08-01
DESCRIPTION | 8 +- MD5 | 50 ++++++------ NAMESPACE | 2 R/range_expansion.R | 16 ++-- R/range_raster.R | 140 +++++++++++++++++------------------- R/spom.R | 2 build/vignette.rds |binary data/cabrera.rda |binary data/datalist | 1 data/landscape_change.rda |binary data/mc_df.rda |binary data/occ.landscape.rda |binary data/occ.landscape2.rda |binary data/param1.rda |binary data/param2.rda |only data/rg_exp.rda |binary data/rland.rda |binary inst/doc/MetaLandSim.pdf |binary inst/doc/landscape_simulation.pdf |binary inst/doc/parametrization.pdf |binary inst/doc/range_expansion.pdf |binary inst/examples/landmask.asc.aux.xml |only inst/examples/presences.asc.aux.xml |only man/MetaLandSim-package.Rd | 4 - man/param1.Rd | 2 man/param2.Rd |only man/range_expansion.Rd | 6 - man/range_raster.Rd | 8 +- 28 files changed, 119 insertions(+), 120 deletions(-)
Title: Exploratory and Descriptive Event-Based Data Analysis
Description: Functions for exploratory and descriptive analysis of event based
data. Can be used to import and export Xes-files, the IEEE eXtensible Event
Stream standard. Provides methods for describing and selecting process data,
and for preparing event log data for process mining.
Author: Gert Janssenswillen
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between edeaR versions 0.4.1 dated 2016-06-02 and 0.4.2 dated 2016-08-01
DESCRIPTION | 6 ++--- MD5 | 28 +++++++++++++------------- R/activities.R | 2 - R/edeaR.R | 3 +- R/mapping.R | 12 +++++------ R/number_of_selfloops_activity.R | 2 - R/processing_time.R | 6 +++-- R/processing_time_activity.R | 38 +++++++++++++++++++++--------------- R/processing_time_case.R | 13 ++++++++++-- R/resource_frequency_activity.R | 3 -- R/selfloops.R | 41 +++++++++++++++++++++++++++++++++++++++ R/throughput_time_log.R | 1 R/trace_length_log.R | 6 ++--- build/vignette.rds |binary man/processing_time.Rd | 4 ++- 15 files changed, 113 insertions(+), 52 deletions(-)
Title: Directional Statistics
Description: A collection of R functions for directional data analysis.
Author: Michail Tsagris, Giorgos Athineou, Anamul Sajib
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Directional versions 2.1 dated 2016-06-20 and 2.2 dated 2016-08-01
Directional-2.1/Directional/man/mediandir_2.Rd |only Directional-2.2/Directional/DESCRIPTION | 10 Directional-2.2/Directional/MD5 | 233 ++++++++--------- Directional-2.2/Directional/NAMESPACE | 6 Directional-2.2/Directional/R/acg.R | 38 +- Directional-2.2/Directional/R/bic.mixvmf.R | 4 Directional-2.2/Directional/R/circ.cor1.R | 13 Directional-2.2/Directional/R/circ.cor2.R | 2 Directional-2.2/Directional/R/circ.summary.R | 4 Directional-2.2/Directional/R/circlin.cor.R | 5 Directional-2.2/Directional/R/conc.test.R | 24 - Directional-2.2/Directional/R/dirknn.tune.R | 6 Directional-2.2/Directional/R/embed.aov.R | 20 - Directional-2.2/Directional/R/embed.circaov.R | 26 + Directional-2.2/Directional/R/eul2rot.R |only Directional-2.2/Directional/R/f.rbing.R | 15 - Directional-2.2/Directional/R/fishkent.R | 22 - Directional-2.2/Directional/R/ggvm.R |only Directional-2.2/Directional/R/group.gof.R | 4 Directional-2.2/Directional/R/habeck.rot.R |only Directional-2.2/Directional/R/hcf.aov.R | 21 - Directional-2.2/Directional/R/hcf.circaov.R | 21 - Directional-2.2/Directional/R/het.aov.R | 17 - Directional-2.2/Directional/R/het.circaov.R | 22 - Directional-2.2/Directional/R/kent.mle.R | 4 Directional-2.2/Directional/R/knn.reg.R | 34 +- Directional-2.2/Directional/R/knnreg.tune.R | 10 Directional-2.2/Directional/R/kuiper.R | 10 Directional-2.2/Directional/R/lambert.R | 2 Directional-2.2/Directional/R/lr.aov.R | 29 +- Directional-2.2/Directional/R/lr.circaov.R | 36 +- Directional-2.2/Directional/R/meandir.test.R | 6 Directional-2.2/Directional/R/mediandir.R | 35 +- Directional-2.2/Directional/R/mediandir_2.R | 27 - Directional-2.2/Directional/R/mix.vmf.R | 62 ++-- Directional-2.2/Directional/R/rayleigh.R | 18 - Directional-2.2/Directional/R/rbingham.R | 11 Directional-2.2/Directional/R/rfb.R | 4 Directional-2.2/Directional/R/rmatrixfisher.R | 8 Directional-2.2/Directional/R/rot.matrix.R | 7 Directional-2.2/Directional/R/rot2eul.R |only Directional-2.2/Directional/R/rvmf.R | 20 - Directional-2.2/Directional/R/rvnomises.R | 2 Directional-2.2/Directional/R/spher.cor.R | 28 +- Directional-2.2/Directional/R/spherconc.test.R | 27 - Directional-2.2/Directional/R/spml.reg.R | 33 +- Directional-2.2/Directional/R/tang.conc.R | 26 - Directional-2.2/Directional/R/visual.check.R |only Directional-2.2/Directional/R/vm.kde.R | 10 Directional-2.2/Directional/R/vmf.R | 9 Directional-2.2/Directional/R/vmf.da.R | 41 +- Directional-2.2/Directional/R/vmf.kde.R | 2 Directional-2.2/Directional/R/vmf.kerncontour.R | 10 Directional-2.2/Directional/R/vmfda.pred.R | 7 Directional-2.2/Directional/R/vmfkde.tune.R | 4 Directional-2.2/Directional/R/vmkde.tune.R | 13 Directional-2.2/Directional/R/watson.R | 4 Directional-2.2/Directional/R/wood.mle.R | 2 Directional-2.2/Directional/man/Arotation.Rd | 4 Directional-2.2/Directional/man/Directional-package.Rd | 11 Directional-2.2/Directional/man/acg.Rd | 2 Directional-2.2/Directional/man/bic.mixvmf.Rd | 2 Directional-2.2/Directional/man/circ.summary.Rd | 4 Directional-2.2/Directional/man/circlin.cor.Rd | 4 Directional-2.2/Directional/man/conc.test.Rd | 2 Directional-2.2/Directional/man/dirknn.Rd | 2 Directional-2.2/Directional/man/dirknn.tune.Rd | 2 Directional-2.2/Directional/man/euclid.Rd | 2 Directional-2.2/Directional/man/euclid.inv.Rd | 2 Directional-2.2/Directional/man/eul2rot.Rd |only Directional-2.2/Directional/man/f.rbing.Rd | 2 Directional-2.2/Directional/man/fb.saddle.Rd | 2 Directional-2.2/Directional/man/fishkent.Rd | 4 Directional-2.2/Directional/man/ggvm.Rd |only Directional-2.2/Directional/man/group.gof.Rd | 6 Directional-2.2/Directional/man/group.vm.Rd | 2 Directional-2.2/Directional/man/habeck.rot.Rd |only Directional-2.2/Directional/man/hcf.aov.Rd | 3 Directional-2.2/Directional/man/kent.contour.Rd | 2 Directional-2.2/Directional/man/kent.datacontour.Rd | 4 Directional-2.2/Directional/man/kent.logcon.Rd | 6 Directional-2.2/Directional/man/kent.mle.Rd | 4 Directional-2.2/Directional/man/knn.reg.Rd | 2 Directional-2.2/Directional/man/knnreg.tune.Rd | 4 Directional-2.2/Directional/man/lambert.Rd | 2 Directional-2.2/Directional/man/lambert.inv.Rd | 2 Directional-2.2/Directional/man/matrixfisher.mle.Rd | 2 Directional-2.2/Directional/man/meandir.test.Rd | 4 Directional-2.2/Directional/man/mediandir.Rd | 14 - Directional-2.2/Directional/man/mix.vmf.Rd | 4 Directional-2.2/Directional/man/mixvmf.contour.Rd | 2 Directional-2.2/Directional/man/pvm.Rd | 6 Directional-2.2/Directional/man/quat2rot.Rd | 6 Directional-2.2/Directional/man/rayleigh.Rd | 2 Directional-2.2/Directional/man/rbingham.Rd | 6 Directional-2.2/Directional/man/rfb.Rd | 2 Directional-2.2/Directional/man/rkent.Rd | 2 Directional-2.2/Directional/man/rmatrixfisher.Rd | 2 Directional-2.2/Directional/man/rmixvmf.Rd | 2 Directional-2.2/Directional/man/rot.matrix.Rd | 2 Directional-2.2/Directional/man/rot2eul.Rd |only Directional-2.2/Directional/man/rot2quat.Rd | 16 - Directional-2.2/Directional/man/rotation.Rd | 2 Directional-2.2/Directional/man/rsop.Rd | 2 Directional-2.2/Directional/man/rvmf.Rd | 2 Directional-2.2/Directional/man/rvonmises.Rd | 6 Directional-2.2/Directional/man/spher.cor.Rd | 4 Directional-2.2/Directional/man/spher.reg.Rd | 2 Directional-2.2/Directional/man/spherconc.test.Rd | 2 Directional-2.2/Directional/man/spml.reg.Rd | 2 Directional-2.2/Directional/man/tang.conc.Rd | 4 Directional-2.2/Directional/man/vec.Rd | 14 - Directional-2.2/Directional/man/visual.check.Rd |only Directional-2.2/Directional/man/vm.kde.Rd | 2 Directional-2.2/Directional/man/vmf.Rd | 6 Directional-2.2/Directional/man/vmf.contour.Rd | 2 Directional-2.2/Directional/man/vmf.da.Rd | 2 Directional-2.2/Directional/man/vmf.kde.Rd | 2 Directional-2.2/Directional/man/vmf.kerncontour.Rd | 2 Directional-2.2/Directional/man/vmfda.pred.Rd | 2 Directional-2.2/Directional/man/vmfkde.tune.Rd | 6 Directional-2.2/Directional/man/vmkde.tune.Rd | 6 Directional-2.2/Directional/man/wood.mle.Rd | 4 123 files changed, 683 insertions(+), 599 deletions(-)
Title: Dynamic Range Boxes
Description: Improves the concept of multivariate range boxes, which is highly susceptible for outliers and does not consider the distribution of the data. The package uses dynamic range boxes to overcome these problems.
Author: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>,
Wolfgang Trutschnig <Wolfgang.Trutschnig@sbg.ac.at>,
Robert R. Junker <Robert.Junker@sbg.ac.at>,
Jonas Kuppler <Jonas.Kuppler@uni-duesseldorf.de>,
Arne Bathke <Arne.Bathke@sbg.ac.at>
Maintainer: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>
Diff between dynRB versions 0.7 dated 2016-03-24 and 0.8 dated 2016-08-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- man/dynRB-package.Rd | 6 +++--- man/dynRB_Pn.Rd | 6 +++--- man/dynRB_VPa.Rd | 6 +++--- man/dynRB_Vn.Rd | 6 +++--- 6 files changed, 20 insertions(+), 20 deletions(-)
Title: Statistical Analyses of De Novo Genetic Variants
Description: An integrated toolset for the analysis of de novo (sporadic)
genetic sequence variants. denovolyzeR implements a mutational model that
estimates the probability of a de novo genetic variant arising in each human
gene, from which one can infer the expected number of de novo variants in a
given population size. Observed variant frequencies can then be compared against
expectation in a Poisson framework. denovolyzeR provides a suite of functions
to implement these analyses for the interpretation of de novo variation in human
disease.
Author: James Ware [aut, cre],
Jason Homsy [ctb],
Kaitlin Samocha [ctb]
Maintainer: James Ware <j.ware@imperial.ac.uk>
Diff between denovolyzeR versions 0.1.1 dated 2016-06-18 and 0.2.0 dated 2016-08-01
denovolyzeR-0.1.1/denovolyzeR/data/fmrpGenes.rda |only denovolyzeR-0.2.0/denovolyzeR/DESCRIPTION | 12 denovolyzeR-0.2.0/denovolyzeR/MD5 | 25 - denovolyzeR-0.2.0/denovolyzeR/NAMESPACE | 2 denovolyzeR-0.2.0/denovolyzeR/NEWS.md |only denovolyzeR-0.2.0/denovolyzeR/R/denovolyze.R | 84 +-- denovolyzeR-0.2.0/denovolyzeR/R/denovolyzeMultiHits.R | 1 denovolyzeR-0.2.0/denovolyzeR/R/parseInput.R | 2 denovolyzeR-0.2.0/denovolyzeR/R/viewProbabilityTable.R | 3 denovolyzeR-0.2.0/denovolyzeR/build/vignette.rds |binary denovolyzeR-0.2.0/denovolyzeR/data/FMRPgenes.rda |only denovolyzeR-0.2.0/denovolyzeR/inst/doc/denovolyzeR_intro.R | 11 denovolyzeR-0.2.0/denovolyzeR/inst/doc/denovolyzeR_intro.Rmd | 22 denovolyzeR-0.2.0/denovolyzeR/inst/doc/denovolyzeR_intro.html | 246 +++++----- denovolyzeR-0.2.0/denovolyzeR/vignettes/denovolyzeR_intro.Rmd | 22 15 files changed, 219 insertions(+), 211 deletions(-)
Title: Compositional Data Analysis
Description: A collection of functions for compositional data analysis.
Author: Michail Tsagris [aut, cre], Giorgos Athineou [aut]
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Compositional versions 1.5 dated 2016-07-10 and 1.6 dated 2016-08-01
DESCRIPTION | 10 +-- MD5 | 122 ++++++++++++++++++++------------------- NAMESPACE | 6 - R/alfa.knn.R | 4 - R/alfa.pcr.R | 2 R/alfa.rda.R | 1 R/alfa.reg.R | 7 -- R/alfa.ridge.R | 1 R/alfa.tune.R | 4 - R/alfapcr.tune.R | 84 +++++---------------------- R/alfarda.tune.R | 3 R/alfareg.tune.R | 4 - R/comp.den.R | 132 +++++++++++++++++++++---------------------- R/comp.kerncontour.R | 3 R/comp.knn.R | 6 - R/compknn.tune.R | 4 - R/d.dirichlet.R |only R/diri.nr.R | 27 +++----- R/diri.reg.R | 3 R/el.test2.R | 21 +++--- R/frechet.R | 4 - R/glm.pcr.R | 4 - R/glmpcr.tune.R | 18 +++-- R/hotel1T2.R | 8 +- R/hotel2T2.R | 8 +- R/james.R | 18 ++--- R/js.compreg.R | 2 R/kl.compreg.R | 8 +- R/kl.diri.R | 10 +-- R/maov.R | 15 +--- R/maovjames.R | 15 ++-- R/mixnorm.contour.R | 4 - R/mkde.R | 20 +++--- R/mkde.tune.R | 9 +- R/multivreg.R | 4 - R/norm.contour.R | 7 -- R/pcr.R | 11 +-- R/pcr.tune.R | 12 +-- R/rda.R | 9 +- R/rda.tune.R | 19 ++---- R/ridge.plot.R | 4 - R/ridge.reg.R | 6 - R/ridge.tune.R | 10 +-- R/rmvnorm.R | 2 R/rmvt.R | 2 R/spat.med.R | 21 +++--- R/spatmed.reg.R | 38 ++++++++---- R/sscov.R | 8 +- R/sym.test.R | 7 -- R/ternary.R | 8 +- man/Compositional-package.Rd | 9 +- man/alfa.reg.Rd | 4 - man/alfarda.tune.Rd | 6 - man/alfareg.tune.Rd | 4 - man/comp.den.Rd | 5 + man/d.dirichlet.Rd |only man/diri.contour.Rd | 2 man/diri.est.Rd | 6 - man/diri.nr.Rd | 2 man/dirimean.test.Rd | 2 man/spat.med.Rd | 11 ++- man/spatmed.reg.Rd | 9 +- man/sscov.Rd | 5 + 63 files changed, 397 insertions(+), 423 deletions(-)
Title: Hierarchical Bayesian ANOVA Models
Description: It covers several Bayesian Analysis of Variance (BANOVA) models used in analysis of experimental designs in which both within- and between- subjects factors are manipulated. They can be applied to data that are common in the behavioral sciences and related fields. The package includes: Hierarchical Bayes ANOVA models with normal response, t response, Binomial(Bernoulli) response, Poisson response, ordered multinomial response and multinomial response variables. All models accommodate unobserved heterogeneity by including a normal distribution of the parameters across individuals. Outputs of the package include tables of sums of squares, effect sizes and p-values, and tables of means, which are easily interpretable for behavioral researchers. BANOVA uses JAGS as the computational platform.
Author: Chen Dong, Michel Wedel
Maintainer: Chen Dong <cdong@math.umd.edu>
Diff between BANOVA versions 0.5 dated 2016-04-03 and 0.6 dated 2016-08-01
DESCRIPTION | 8 MD5 | 52 - R/BANOVA.BernNormal.R | 12 R/BANOVA.BinNormal.R | 12 R/BANOVA.MultiNormal.R | 19 R/BANOVA.NormalNormal.R | 13 R/BANOVA.PNormal.R | 12 R/BANOVA.TNormal.R | 13 R/BANOVA.ordMultiNormal.R | 13 R/JAGSgen.normalNormal.R | 2 R/conv.geweke.heidel.R | 19 R/design.matrix.R | 166 +-- R/effect.matrix.factor.R | 50 - R/effect.matrix.interaction.R | 104 +- R/est.R | 173 ++- R/est.multi.R | 87 + R/get.interactions.R | 48 - R/get.values.R | 40 R/multi.design.matrix.R | 330 +++---- R/multi.effect.matrix.factor.R | 64 + R/multi.effect.matrix.interaction.R | 119 +- R/multi.print.table.means.R | 1118 ++++++++++++------------- R/print.conv.diag.R | 2 R/print.table.means.R | 1588 ++++++++++++++++++------------------ R/table.means.R | 90 +- man/BANOVA-package.Rd | 6 man/table.means.Rd | 2 27 files changed, 2183 insertions(+), 1979 deletions(-)
Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from
Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>
Diff between arulesSequences versions 0.2-15 dated 2016-05-05 and 0.2-16 dated 2016-08-01
CHANGELOG | 8 ++++++-- DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/05read_write.R | 6 ++++++ man/cspade.Rd | 9 +++++---- tests/zaki.R | 8 +++++++- tests/zaki.Rout.save | 45 ++++++++++++++++++++++++++++++++++++--------- 7 files changed, 69 insertions(+), 25 deletions(-)
More information about arulesSequences at CRAN
Permanent link
Title: Survey Planning Tools
Description: Tools for sample survey planning, including sample size calculation, estimation of expected precision for the estimates of totals, and calculation of optimal sample size allocation.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Janis Jukams [aut]
Maintainer: Juris Breidaks <rcsb@csb.gov.lv>
Diff between surveyplanning versions 1.8 dated 2016-07-04 and 2.0 dated 2016-08-01
DESCRIPTION | 8 ++++---- MD5 | 19 +++++++++++++------ NAMESPACE | 1 + R/dom_optimal_allocation.R | 4 ++-- R/expsize.R | 2 +- R/ratio_dom_optimal_allocation.R |only inst |only man/dom_optimal_allocation.Rd | 2 ++ man/ratio_dom_optimal_allocation.Rd |only man/surveyplanning-package.Rd | 4 ++-- 10 files changed, 25 insertions(+), 15 deletions(-)
More information about surveyplanning at CRAN
Permanent link
Title: Camera Trap Data Management and Preparation of Occupancy and
Spatial Capture-Recapture Analyses
Description: Management of and data extraction from camera trap photographs in wildlife studies. The package provides a workflow for storing and sorting camera trap photographs, computes record databases and detection/non-detection matrices for occupancy and spatial capture-recapture analyses with great flexibility. In addition, it provides simple mapping functions (number of species, number of independent species detections by station) and can visualise activity data.
Author: Juergen Niedballa [aut, cre],
Alexandre Courtiol [aut],
Rahel Sollmann [aut],
John Mathai [ctb],
Seth Timothy Wong [ctb],
An The Truong Nguyen [ctb],
Azlan bin Mohamed [ctb],
Andrew Tilker [ctb],
Andreas Wilting [ctb, ths]
Maintainer: Juergen Niedballa <niedballa@izw-berlin.de>
Diff between camtrapR versions 0.99.2 dated 2016-06-24 and 0.99.3 dated 2016-08-01
DESCRIPTION | 12 - MD5 | 63 +++++---- NAMESPACE | 4 NEWS | 57 ++++---- R/activityDensity.R | 4 R/activityOverlap.R | 1 R/addCopyrightTag.R |only R/detectionHistory.R | 31 +++- R/spatialDetectionHistory.R | 36 +++++ R/surveyReport.R | 46 +++---- R/variousOtherHelperFunctions.R | 102 ++++++++++----- build/vignette.rds |binary inst/doc/DataExploration.Rmd | 7 - inst/doc/DataExploration.html | 16 +- inst/doc/DataExtraction.R | 7 - inst/doc/DataExtraction.Rmd | 29 +++- inst/doc/DataExtraction.html | 167 +++++++++++++++++++------- inst/doc/ImageOrganisation.R | 18 ++ inst/doc/ImageOrganisation.Rmd | 51 ++++++- inst/doc/ImageOrganisation.html | 142 +++++++++++++++++----- inst/doc/SpeciesIndividualIdentification.R | 3 inst/doc/SpeciesIndividualIdentification.Rmd | 60 ++++++++- inst/doc/SpeciesIndividualIdentification.html | 137 +++++++++++++-------- man/addCopyrightTag.Rd |only man/camtrapR-package.Rd | 2 man/detectionHistory.Rd | 4 man/recordTable.Rd | 11 - man/spatialDetectionHistory.Rd | 4 man/timeShiftImages.Rd | 2 vignettes/DataExploration.Rmd | 7 - vignettes/DataExtraction.Rmd | 29 +++- vignettes/ImageOrganisation.Rmd | 51 ++++++- vignettes/SpeciesID_digiKam.png |only vignettes/SpeciesIndividualIdentification.Rmd | 60 ++++++++- 34 files changed, 834 insertions(+), 329 deletions(-)
Title: A Compression Format Optimized for the Web
Description: A lossless compressed data format that uses a combination of the
LZ77 algorithm and Huffman coding. Brotli is similar in speed to deflate (gzip)
but offers more dense compression.
Author: Jeroen Ooms [aut, cre],
Google, Inc [aut, cph] (Brotli C++ library)
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between brotli versions 0.6 dated 2016-03-01 and 0.8 dated 2016-08-01
brotli-0.6/brotli/src/dec/dictionary.c |only brotli-0.6/brotli/src/dec/dictionary.h |only brotli-0.6/brotli/src/dec/types.h |only brotli-0.6/brotli/src/enc/backward_references.cc |only brotli-0.6/brotli/src/enc/block_splitter.cc |only brotli-0.6/brotli/src/enc/brotli_bit_stream.cc |only brotli-0.6/brotli/src/enc/compress_fragment.cc |only brotli-0.6/brotli/src/enc/compress_fragment_two_pass.cc |only brotli-0.6/brotli/src/enc/dictionary.cc |only brotli-0.6/brotli/src/enc/dictionary.h |only brotli-0.6/brotli/src/enc/encode.cc |only brotli-0.6/brotli/src/enc/entropy_encode.cc |only brotli-0.6/brotli/src/enc/histogram.cc |only brotli-0.6/brotli/src/enc/literal_cost.cc |only brotli-0.6/brotli/src/enc/metablock.cc |only brotli-0.6/brotli/src/enc/static_dict.cc |only brotli-0.6/brotli/src/enc/transform.h |only brotli-0.6/brotli/src/enc/types.h |only brotli-0.6/brotli/src/enc/utf8_util.cc |only brotli-0.6/brotli/src/wrapper.cc |only brotli-0.8/brotli/DESCRIPTION | 12 brotli-0.8/brotli/MD5 | 158 brotli-0.8/brotli/NEWS | 6 brotli-0.8/brotli/R/brotli.R | 36 brotli-0.8/brotli/README.md |only brotli-0.8/brotli/build/vignette.rds |binary brotli-0.8/brotli/inst/doc/benchmarks.html | 1124 brotli-0.8/brotli/man/brotli.Rd | 13 brotli-0.8/brotli/src/Makevars | 44 brotli-0.8/brotli/src/common |only brotli-0.8/brotli/src/config.h | 2 brotli-0.8/brotli/src/dec/bit_reader.c | 10 brotli-0.8/brotli/src/dec/bit_reader.h | 42 brotli-0.8/brotli/src/dec/context.h | 2 brotli-0.8/brotli/src/dec/decode.c | 930 brotli-0.8/brotli/src/dec/decode.h | 172 brotli-0.8/brotli/src/dec/huffman.c | 10 brotli-0.8/brotli/src/dec/huffman.h | 27 brotli-0.8/brotli/src/dec/port.h | 113 brotli-0.8/brotli/src/dec/prefix.h | 8 brotli-0.8/brotli/src/dec/state.c | 40 brotli-0.8/brotli/src/dec/state.h | 55 brotli-0.8/brotli/src/dec/transform.h | 2 brotli-0.8/brotli/src/enc/backward_references.c |only brotli-0.8/brotli/src/enc/backward_references.h | 114 brotli-0.8/brotli/src/enc/backward_references_inc.h |only brotli-0.8/brotli/src/enc/bit_cost.c |only brotli-0.8/brotli/src/enc/bit_cost.h | 122 brotli-0.8/brotli/src/enc/bit_cost_inc.h |only brotli-0.8/brotli/src/enc/block_encoder_inc.h |only brotli-0.8/brotli/src/enc/block_splitter.c |only brotli-0.8/brotli/src/enc/block_splitter.h | 88 brotli-0.8/brotli/src/enc/block_splitter_inc.h |only brotli-0.8/brotli/src/enc/brotli_bit_stream.c |only brotli-0.8/brotli/src/enc/brotli_bit_stream.h | 255 brotli-0.8/brotli/src/enc/cluster.c |only brotli-0.8/brotli/src/enc/cluster.h | 299 brotli-0.8/brotli/src/enc/cluster_inc.h |only brotli-0.8/brotli/src/enc/command.h | 161 brotli-0.8/brotli/src/enc/compress_fragment.c |only brotli-0.8/brotli/src/enc/compress_fragment.h | 83 brotli-0.8/brotli/src/enc/compress_fragment_two_pass.c |only brotli-0.8/brotli/src/enc/compress_fragment_two_pass.h | 61 brotli-0.8/brotli/src/enc/compressor.cc |only brotli-0.8/brotli/src/enc/compressor.h |only brotli-0.8/brotli/src/enc/context.h | 196 brotli-0.8/brotli/src/enc/dictionary_hash.h | 14 brotli-0.8/brotli/src/enc/encode.c |only brotli-0.8/brotli/src/enc/encode.h | 406 brotli-0.8/brotli/src/enc/encode_parallel.cc | 308 brotli-0.8/brotli/src/enc/encode_parallel.h | 15 brotli-0.8/brotli/src/enc/entropy_encode.c |only brotli-0.8/brotli/src/enc/entropy_encode.h | 188 brotli-0.8/brotli/src/enc/entropy_encode_static.h | 91 brotli-0.8/brotli/src/enc/fast_log.h | 46 brotli-0.8/brotli/src/enc/find_match_length.h | 43 brotli-0.8/brotli/src/enc/hash.h | 1486 brotli-0.8/brotli/src/enc/hash_forgetful_chain_inc.h |only brotli-0.8/brotli/src/enc/hash_longest_match_inc.h |only brotli-0.8/brotli/src/enc/hash_longest_match_quickly_inc.h |only brotli-0.8/brotli/src/enc/histogram.c |only brotli-0.8/brotli/src/enc/histogram.h | 128 brotli-0.8/brotli/src/enc/histogram_inc.h |only brotli-0.8/brotli/src/enc/literal_cost.c |only brotli-0.8/brotli/src/enc/literal_cost.h | 30 brotli-0.8/brotli/src/enc/memory.c |only brotli-0.8/brotli/src/enc/memory.h |only brotli-0.8/brotli/src/enc/metablock.c |only brotli-0.8/brotli/src/enc/metablock.h | 156 brotli-0.8/brotli/src/enc/metablock_inc.h |only brotli-0.8/brotli/src/enc/port.h | 120 brotli-0.8/brotli/src/enc/prefix.h | 95 brotli-0.8/brotli/src/enc/quality.h |only brotli-0.8/brotli/src/enc/ringbuffer.h | 231 brotli-0.8/brotli/src/enc/static_dict.c |only brotli-0.8/brotli/src/enc/static_dict.h | 39 brotli-0.8/brotli/src/enc/static_dict_lut.h |23260 ++++++------- brotli-0.8/brotli/src/enc/streams.cc | 14 brotli-0.8/brotli/src/enc/streams.h | 64 brotli-0.8/brotli/src/enc/utf8_util.c |only brotli-0.8/brotli/src/enc/utf8_util.h | 27 brotli-0.8/brotli/src/enc/write_bits.h | 86 brotli-0.8/brotli/src/tools |only brotli-0.8/brotli/src/wrapper.c |only 104 files changed, 15501 insertions(+), 15531 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-04 0.1