Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912.
Author: Michael Hahsler [aut, cre, cph],
Matthew Bolanos [aut, cph],
John Forrest [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between stream versions 1.2-2 dated 2015-10-28 and 1.2-3 dated 2016-08-07
stream-1.2-2/stream/inst/NEWS |only stream-1.2-2/stream/inst/tests |only stream-1.2-3/stream/DESCRIPTION | 10 stream-1.2-3/stream/MD5 | 46 +-- stream-1.2-3/stream/NAMESPACE | 41 +-- stream-1.2-3/stream/R/DSC.R | 81 +++--- stream-1.2-3/stream/R/DSC_DBSCAN.R | 50 ++-- stream-1.2-3/stream/R/DSC_DBSTREAM.R | 229 +++++++++---------- stream-1.2-3/stream/R/DSC_Hierarchical.R | 89 ++++--- stream-1.2-3/stream/R/DSC_Reachability.R | 1 stream-1.2-3/stream/R/DSC_Sample.R | 6 stream-1.2-3/stream/R/DSD.R | 42 +-- stream-1.2-3/stream/R/DSD_Gaussians.R | 64 ++--- stream-1.2-3/stream/R/DSD_ReadCSV.R | 8 stream-1.2-3/stream/R/DSD_UniformNoise.R | 34 +- stream-1.2-3/stream/README.md |only stream-1.2-3/stream/build/vignette.rds |binary stream-1.2-3/stream/inst/doc/stream.pdf |binary stream-1.2-3/stream/inst/doc/stream_extension.Rnw | 2 stream-1.2-3/stream/inst/doc/stream_extension.pdf |binary stream-1.2-3/stream/man/DSC_Sample.Rd | 2 stream-1.2-3/stream/src/DBSTREAM.cpp | 252 ++++++++++----------- stream-1.2-3/stream/tests/testthat |only stream-1.2-3/stream/tests/testthat.R | 4 stream-1.2-3/stream/vignettes/stream_extension.Rnw | 2 25 files changed, 497 insertions(+), 466 deletions(-)
Title: Forest Growth Model Utilities
Description: Growth models and forest production require existing data
manipulation and the creation of new data, structured from basic forest
inventory data. The purpose of this package is provide functions to support
these activities.
Author: Clayton Vieira Fraga Filho,
Ana Paula Simiqueli,
Gilson Fernandes da Silva,
Miqueias Fernandes,
Wagner Amorim da Silva Altoe
Maintainer: Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>
Diff between Fgmutils versions 0.7 dated 2016-08-01 and 0.8 dated 2016-08-07
DESCRIPTION | 6 +- MD5 | 18 +++++--- NAMESPACE | 2 NEWS | 6 ++ R/classificaClasseDAP.R | 59 +++++++++++++++++---------- R/classificarDAP.R |only R/defineClasses.R | 95 ++++++++++++++++++++++++++++++++------------- R/getClasses.R |only man/classificaClasseDAP.Rd | 12 +++-- man/classificarDAP.Rd |only man/defineClasses.Rd | 7 ++- man/getClasses.Rd |only 12 files changed, 141 insertions(+), 64 deletions(-)
More information about googleCloudStorageR at CRAN
Permanent link
Title: Drat R Archive Template
Description: Creation and use of R Repositories via helper functions
to insert packages into a repository, and to add repository information
to the current R session. Two primary types of repositories are support:
gh-pages at GitHub, as well as local repositories on either the same machine
or a local network. Drat is a recursive acronym: Drat R Archive Template.
Author: Dirk Eddelbuettel with contributions by Carl Boettiger, Sebastian
Gibb, Colin Gillespie, Jan Górecki, Matt Jones, Thomas Leeper, Steven Pav
and Jan Schulz.
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between drat versions 0.1.0 dated 2015-08-08 and 0.1.1 dated 2016-08-07
ChangeLog | 43 +++++++++++++++++++++ DESCRIPTION | 17 +++++--- MD5 | 45 +++++++++++----------- R/addRepo.R | 2 - R/insertPackage.R | 17 +++++--- R/pruneRepo.R | 2 - README.md | 8 ++-- build/vignette.rds |binary inst/NEWS.Rd |only inst/doc/CombiningDratAndTravis.Rmd | 2 - inst/doc/CombiningDratAndTravis.html | 14 ++++--- inst/doc/DratFAQ.Rmd | 26 ++++++++----- inst/doc/DratFAQ.html | 20 ++++++---- inst/doc/DratForPackageAuthors.R | 2 - inst/doc/DratForPackageAuthors.Rmd | 2 - inst/doc/DratForPackageAuthors.html | 70 +++++++++++++++++++++-------------- inst/doc/DratForPackageUsers.Rmd | 2 - inst/doc/DratForPackageUsers.html | 64 ++++++++++++++++++++------------ inst/doc/WhyDrat.html | 64 ++++++++++++++++++++------------ man/insertPackage.Rd | 17 +++++--- vignettes/CombiningDratAndTravis.Rmd | 2 - vignettes/DratFAQ.Rmd | 26 ++++++++----- vignettes/DratForPackageAuthors.Rmd | 2 - vignettes/DratForPackageUsers.Rmd | 2 - 24 files changed, 288 insertions(+), 161 deletions(-)
Title: Functional Annotation and Biological Data Retrieval with R
Description: Perform biological data retrieval and functional annotation with
R. This tool provides API functions to the BioMart database and genome retrieval
functions for bulk retrieval of genomes.
Author: Hajk-Georg Drost
Maintainer: Hajk-Georg Drost <hgd23@cam.ac.uk>
Diff between biomartr versions 0.0.3 dated 2016-03-02 and 0.1.0 dated 2016-08-07
biomartr-0.0.3/biomartr/inst/doc/Phylotranscriptomics.R |only biomartr-0.0.3/biomartr/inst/doc/Phylotranscriptomics.Rmd |only biomartr-0.0.3/biomartr/inst/doc/Phylotranscriptomics.html |only biomartr-0.0.3/biomartr/vignettes/Phylotranscriptomics.Rmd |only biomartr-0.1.0/biomartr/DESCRIPTION | 6 biomartr-0.1.0/biomartr/MD5 | 64 ++-- biomartr-0.1.0/biomartr/NAMESPACE | 2 biomartr-0.1.0/biomartr/NEWS.md | 17 + biomartr-0.1.0/biomartr/R/download_database.R | 2 biomartr-0.1.0/biomartr/R/getCDS.R | 53 ++-- biomartr-0.1.0/biomartr/R/getGenome.R | 55 ++-- biomartr-0.1.0/biomartr/R/getKingdoms.R |only biomartr-0.1.0/biomartr/R/getProteome.R | 47 ++- biomartr-0.1.0/biomartr/R/listDatabases.R | 2 biomartr-0.1.0/biomartr/R/meta.retrieval.R |only biomartr-0.1.0/biomartr/R/organismBM.R | 37 +- biomartr-0.1.0/biomartr/README.md | 37 +- biomartr-0.1.0/biomartr/build/vignette.rds |binary biomartr-0.1.0/biomartr/inst/doc/Database_Retrieval.html | 20 - biomartr-0.1.0/biomartr/inst/doc/Evolutionary_Transcriptomics.R |only biomartr-0.1.0/biomartr/inst/doc/Evolutionary_Transcriptomics.Rmd |only biomartr-0.1.0/biomartr/inst/doc/Evolutionary_Transcriptomics.html |only biomartr-0.1.0/biomartr/inst/doc/Functional_Annotation.html | 20 - biomartr-0.1.0/biomartr/inst/doc/Introduction.Rmd | 2 biomartr-0.1.0/biomartr/inst/doc/Introduction.html | 18 - biomartr-0.1.0/biomartr/inst/doc/Sequence_Retrieval.R | 36 ++ biomartr-0.1.0/biomartr/inst/doc/Sequence_Retrieval.Rmd | 129 +++++++++- biomartr-0.1.0/biomartr/inst/doc/Sequence_Retrieval.html | 88 +++++- biomartr-0.1.0/biomartr/man/download_database.Rd | 2 biomartr-0.1.0/biomartr/man/getCDS.Rd | 10 biomartr-0.1.0/biomartr/man/getGenome.Rd | 21 + biomartr-0.1.0/biomartr/man/getKingdoms.Rd |only biomartr-0.1.0/biomartr/man/getProteome.Rd | 20 + biomartr-0.1.0/biomartr/man/listDatabases.Rd | 2 biomartr-0.1.0/biomartr/man/meta.retrieval.Rd |only biomartr-0.1.0/biomartr/man/organismBM.Rd | 2 biomartr-0.1.0/biomartr/vignettes/Evolutionary_Transcriptomics.Rmd |only biomartr-0.1.0/biomartr/vignettes/Introduction.Rmd | 2 biomartr-0.1.0/biomartr/vignettes/Sequence_Retrieval.Rmd | 129 +++++++++- 39 files changed, 615 insertions(+), 208 deletions(-)
Title: An Algorithm for Morphometric Characters Selection and
Statistical Validation in Morphological Taxonomy
Description: An algorithm which identifies the morphometric features that significantly discriminate two taxa and validates the morphological distinctness between them via a Monte-Carlo test, polar coordinates and overlap of the area under the density curve.
Author: Cástor Guisande González
Maintainer: Cástor Guisande González <castor@uvigo.es>
Diff between VARSEDIG versions 1.1 dated 2016-01-08 and 1.2 dated 2016-08-07
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/VARSEDIG.R | 45 ++++++++++----------------------------------- 3 files changed, 16 insertions(+), 41 deletions(-)
Title: Convert Spatial Data Using Tidy Tables
Description: Tools to convert from specific formats to more general forms of
spatial data. Using tables to store the actual entities present in spatial
data provides far greater flexibility, and the functions here deliberately
minimize the level of interpretation applied, leaving that for specific
applications. Includes round-trip for 'Spatial' classes and long-form
tables, analogous to 'ggplot2::fortify'.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between spbabel versions 0.3.2 dated 2016-06-22 and 0.4.0 dated 2016-08-07
DESCRIPTION | 25 +++++--- MD5 | 41 +++++++++---- NAMESPACE | 13 +++- NEWS.md | 22 +++++++ R/mtable.r |only R/release-questions.r |only R/spFromTable.r | 20 +++--- R/spbabel-package.r | 37 ++++++++---- R/sptable.r | 73 +++++++++++++++++++----- R/unique_ids.r |only R/utils.r | 1 README.md | 109 ++++++------------------------------- build |only data/holey.rda |only data/track.rda |only inst |only man/holey.Rd |only man/map_table.Rd |only man/semap.Rd | 4 - man/sp.Rd | 2 man/spbabel-package.Rd | 20 ++---- man/sptable.Rd | 49 +++++++++++++--- man/track.Rd |only tests/testthat/test-column-types.R |only tests/testthat/test-map_table.R |only tests/testthat/test-spFromTable.R | 7 ++ vignettes |only 27 files changed, 244 insertions(+), 179 deletions(-)
Title: Infrastructure for Ordering Objects Using Seriation
Description: Infrastructure for seriation with an implementation of several
seriation/sequencing techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT).
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph],
Fionn Murtagh [ctb, cph],
Michael Brusco [ctb, cph],
Stephanie Stahl [ctb, cph],
Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between seriation versions 1.2-0 dated 2016-02-22 and 1.2-1 dated 2016-08-07
seriation-1.2-0/seriation/inst/NEWS |only seriation-1.2-1/seriation/DESCRIPTION | 8 seriation-1.2-1/seriation/MD5 | 47 +- seriation-1.2-1/seriation/R/AAAgrid.R | 185 +++++----- seriation-1.2-1/seriation/R/dissimilartiy.R | 143 ++++--- seriation-1.2-1/seriation/R/register_DendSer.R | 27 + seriation-1.2-1/seriation/R/seriate.dist.R | 3 seriation-1.2-1/seriation/README.md | 9 seriation-1.2-1/seriation/build/vignette.rds |binary seriation-1.2-1/seriation/data/Chameleon.rda |binary seriation-1.2-1/seriation/data/Irish.rda |binary seriation-1.2-1/seriation/data/Munsingen.rda |binary seriation-1.2-1/seriation/data/Psych24.rda |binary seriation-1.2-1/seriation/data/Townships.rda |binary seriation-1.2-1/seriation/data/Wood.rda |binary seriation-1.2-1/seriation/data/Zoo.rda |binary seriation-1.2-1/seriation/inst/doc/seriation.Rnw | 2 seriation-1.2-1/seriation/inst/doc/seriation.pdf |binary seriation-1.2-1/seriation/man/dissimilarity.Rd | 91 ++-- seriation-1.2-1/seriation/man/register_DendSer.Rd | 7 seriation-1.2-1/seriation/man/seriate.Rd | 2 seriation-1.2-1/seriation/src/bburcg.f | 2 seriation-1.2-1/seriation/tests/testthat/test-dissimilarity.R | 28 - seriation-1.2-1/seriation/tests/testthat/test-permuation_vector.R | 4 seriation-1.2-1/seriation/vignettes/seriation.Rnw | 2 25 files changed, 312 insertions(+), 248 deletions(-)
Title: Estimation and Fit Diagnostics for Generalized Exponential
Random Graph Models
Description: Estimation and diagnosis of the convergence of Generalized
Exponential Random Graph Models via Gibbs sampling or Metropolis
Hastings with exponential down weighting.
Author: Matthew J. Denny <mdenny@psu.edu>, James D. Wilson
<jdwilson1212@gmail.com>, Skyler Cranmer <cranmer.12@osu.edu >, Bruce A.
Desmarais <bdesmarais@psu.edu>, Shankar Bhamidi <bhamidi@email.unc.edu>
Maintainer: Matthew J. Denny <mdenny@psu.edu>
Diff between GERGM versions 0.7.4 dated 2016-01-18 and 0.10.0 dated 2016-08-07
GERGM-0.10.0/GERGM/DESCRIPTION | 16 GERGM-0.10.0/GERGM/MD5 | 115 + GERGM-0.10.0/GERGM/NAMESPACE | 14 GERGM-0.10.0/GERGM/R/Convert_Simulated_Networks_To_Observed_Scale.R | 56 GERGM-0.10.0/GERGM/R/Create_GERGM_Object.R | 16 GERGM-0.10.0/GERGM/R/Create_GERGM_Object_From_Formula.R | 90 - GERGM-0.10.0/GERGM/R/Estimate_GERGM.R | 311 ++-- GERGM-0.10.0/GERGM/R/Estimate_Plot.R | 223 ++- GERGM-0.10.0/GERGM/R/GERGM_Class.R | 35 GERGM-0.10.0/GERGM/R/GOF.R | 178 ++ GERGM-0.10.0/GERGM/R/GOF_statistic_names.R |only GERGM-0.10.0/GERGM/R/Gibbs_Sampler.R | 6 GERGM-0.10.0/GERGM/R/Helper_Functions.R | 106 - GERGM-0.10.0/GERGM/R/Log_Likelihood_and_MPLE_Objective.R | 302 +++- GERGM-0.10.0/GERGM/R/MCMCMLE.R | 180 +- GERGM-0.10.0/GERGM/R/Network_Statistic_Calculation_Functions.R | 52 GERGM-0.10.0/GERGM/R/Optimize_Proposal_Variance.R | 132 + GERGM-0.10.0/GERGM/R/Package_Documentation.R | 13 GERGM-0.10.0/GERGM/R/Parse_Formula_Object.R | 239 +++ GERGM-0.10.0/GERGM/R/Prepare_Covariates.R | 105 - GERGM-0.10.0/GERGM/R/RcppExports.R | 32 GERGM-0.10.0/GERGM/R/Run_MPLE.R | 153 +- GERGM-0.10.0/GERGM/R/Simulate_GERGM.R | 200 ++- GERGM-0.10.0/GERGM/R/Trace_Plot.R | 21 GERGM-0.10.0/GERGM/R/Update_Lambda_Estimates.R | 27 GERGM-0.10.0/GERGM/R/calculate_additional_GOF_statistics.R |only GERGM-0.10.0/GERGM/R/calculate_h_statistics.R |only GERGM-0.10.0/GERGM/R/calculate_network_statistics.R |only GERGM-0.10.0/GERGM/R/calculate_standard_errors.R |only GERGM-0.10.0/GERGM/R/conditional_edge_prediction.R |only GERGM-0.10.0/GERGM/R/conditional_edge_prediction_correlation_plot.R |only GERGM-0.10.0/GERGM/R/conditional_edge_prediction_plot.R |only GERGM-0.10.0/GERGM/R/extended_MPLE.R |only GERGM-0.10.0/GERGM/R/find_example_simulated_networks.R |only GERGM-0.10.0/GERGM/R/gergm.R | 601 +++++---- GERGM-0.10.0/GERGM/R/grid_search_theta.R |only GERGM-0.10.0/GERGM/R/hysteresis.R | 11 GERGM-0.10.0/GERGM/R/hysteresis_parallel.R | 5 GERGM-0.10.0/GERGM/R/hysteresis_plot.R | 5 GERGM-0.10.0/GERGM/R/optimize_initialization.R |only GERGM-0.10.0/GERGM/R/parallel_gergm.R | 100 + GERGM-0.10.0/GERGM/R/plot_network.R | 663 ++++++++-- GERGM-0.10.0/GERGM/R/prepare_parameter_estimate_data.R |only GERGM-0.10.0/GERGM/R/selected_rows_functions.R |only GERGM-0.10.0/GERGM/R/simulate_networks.R | 430 ++++-- GERGM-0.10.0/GERGM/R/single_gergm_specification.R | 32 GERGM-0.10.0/GERGM/R/zzz.R | 5 GERGM-0.10.0/GERGM/README.md | 151 ++ GERGM-0.10.0/GERGM/man/Estimate_Plot.Rd | 35 GERGM-0.10.0/GERGM/man/GOF.Rd | 25 GERGM-0.10.0/GERGM/man/calculate_network_statistics.Rd |only GERGM-0.10.0/GERGM/man/conditional_edge_prediction.Rd |only GERGM-0.10.0/GERGM/man/conditional_edge_prediction_correlation_plot.Rd |only GERGM-0.10.0/GERGM/man/conditional_edge_prediction_plot.Rd |only GERGM-0.10.0/GERGM/man/find_example_simulated_network.Rd |only GERGM-0.10.0/GERGM/man/gergm.Rd | 158 +- GERGM-0.10.0/GERGM/man/hysteresis_plot.Rd | 4 GERGM-0.10.0/GERGM/man/parallel_gergm.Rd | 99 + GERGM-0.10.0/GERGM/man/plot_network.Rd | 29 GERGM-0.10.0/GERGM/man/simulate_networks.Rd | 99 + GERGM-0.10.0/GERGM/src/Extended_Metropolis_Hastings_Sampler.cpp |only GERGM-0.10.0/GERGM/src/RcppExports.cpp | 174 ++ GERGM-0.10.0/GERGM/src/frobenius_norm.cpp |only GERGM-0.10.0/GERGM/src/weighted_mple_objective.cpp |only GERGM-0.10.0/GERGM/tests/testthat/test_experimental_features.R | 117 - GERGM-0.10.0/GERGM/tests/testthat/test_gergm.R | 27 GERGM-0.10.0/GERGM/tests/testthat/test_gergm_with_downweighting.R | 99 + GERGM-0.10.0/GERGM/tests/testthat/test_node_subset_statistics.R |only GERGM-0.10.0/GERGM/tests/testthat/test_parallel_gergm.R | 4 GERGM-0.10.0/GERGM/tests/testthat/test_slackr_integration.R |only GERGM-0.7.4/GERGM/src/Metropolis_Hastings_Sampler.cpp |only 71 files changed, 3986 insertions(+), 1509 deletions(-)
Title: Calculate Generalized Eigenvalues, the Generalized Schur
Decomposition and the Generalized Singular Value Decomposition
of a Matrix Pair with Lapack
Description: Functions to compute generalized eigenvalues and eigenvectors,
the generalized Schur decomposition and
the generalized Singular Value Decomposition of a matrix pair,
using Lapack routines.
Author: Berend Hasselman [cre, aut],
Lapack authors [aut, cph]
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between geigen versions 1.9 dated 2016-01-07 and 1.9.1 dated 2016-08-07
DESCRIPTION | 8 MD5 | 21 - NEWS | 6 inst/COPYRIGHTS | 6 man/geigen.Rd | 2 man/gqz.Rd | 2 man/gsvd.Rd | 2 src/zggesall.f | 46 +- src/zggevall.f | 948 ------------------------------------------------------- src/zggevsdeps.f | 18 - src/zggsvdall.f | 250 +++++++------- src/zhegall.f |only 12 files changed, 194 insertions(+), 1115 deletions(-)
Title: US Vaccine Adverse Event Reporting System (VAERS) Vaccine Data
for Present
Description: US VAERS vaccine data for 01/01/2016 - 06/14/2016. If you want to
explore the full VAERS data for 1990 - Present (data, symptoms, and
vaccines), then check out the 'vaers' package from the URL below. The URL
and BugReports below correspond to the 'vaers' package, of which 'vaersvax'
is a small subset (2016 only). 'vaers' is not hosted on CRAN due to the
large size of the data set. "VAERS is a national vaccine safety
surveillance program co-sponsored by the US Centers for Disease Control and
Prevention (CDC) and the US Food and Drug Administration (FDA). VAERS is a
post-marketing safety surveillance program, collecting information about
adverse events (possible side effects) that occur after the administration
of vaccines licensed for use in the United States." For more information
about the data, visit <https://vaers.hhs.gov/index>. For information about
vaccination/immunization hazards, visit
<http://www.questionuniverse.com/rethink.html/#vaccine>.
Author: Irucka Embry [aut, cre]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between vaersvax versions 1.0.2 dated 2016-08-06 and 1.0.3 dated 2016-08-07
DESCRIPTION | 13 +++++++------ MD5 | 4 ++-- NEWS.md | 7 ++++++- 3 files changed, 15 insertions(+), 9 deletions(-)
Title: Non-Domestic Vaccine Adverse Event Reporting System (VAERS)
Vaccine Data for Present
Description: Non-Domestic VAERS vaccine data for 01/01/2016 - 06/14/2016. If
you want to explore the full VAERS data for 1990 - Present (data, symptoms,
and vaccines), then check out the 'vaersND' package from the URL below. The
URL and BugReports below correspond to the 'vaersND' package, of which
'vaersNDvax' is a small subset (2016 only). 'vaersND' is not hosted on CRAN
due to the large size of the data set. "VAERS is a national vaccine safety
surveillance program co-sponsored by the US Centers for Disease Control and
Prevention (CDC) and the US Food and Drug Administration (FDA). VAERS is a
post-marketing safety surveillance program, collecting information about
adverse events (possible side effects) that occur after the administration
of vaccines licensed for use in the United States." For more information
about the data, visit <https://vaers.hhs.gov/index>. For information about
vaccination/immunization hazards, visit
<http://www.questionuniverse.com/rethink.html/#vaccine>.
Author: Irucka Embry [aut, cre]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between vaersNDvax versions 1.0.2 dated 2016-08-06 and 1.0.3 dated 2016-08-07
DESCRIPTION | 12 +++++++----- MD5 | 4 ++-- NEWS.md | 7 ++++++- 3 files changed, 15 insertions(+), 8 deletions(-)
Title: Collecting Twitter Data
Description: An implementation of calls designed to extract
and organize Twitter data via Twitter's REST and stream
APIs. Functions formulate GET and POST requests and
convert response objects to more user friendly structures,
e.g., data frames or lists. Specific consideration is
given to functions designed to return tweets, friends,
and followers.
Author: Michael W. Kearney
Maintainer: Michael W. Kearney <mkearney@ku.edu>
Diff between rtweet versions 0.1.0 dated 2016-08-01 and 0.1.4 dated 2016-08-07
rtweet-0.1.0/rtweet/R/parse.R |only rtweet-0.1.0/rtweet/man/parse_all_tweets.Rd |only rtweet-0.1.0/rtweet/man/parse_status.Rd |only rtweet-0.1.0/rtweet/man/parse_user.Rd |only rtweet-0.1.4/rtweet/DESCRIPTION | 8 - rtweet-0.1.4/rtweet/MD5 | 48 ++++---- rtweet-0.1.4/rtweet/NAMESPACE | 12 +- rtweet-0.1.4/rtweet/NEWS.md |only rtweet-0.1.4/rtweet/R/TWIT.R | 17 ++ rtweet-0.1.4/rtweet/R/followers.R | 16 +- rtweet-0.1.4/rtweet/R/friends.R | 11 + rtweet-0.1.4/rtweet/R/parse.tweets.R |only rtweet-0.1.4/rtweet/R/parse.users.R |only rtweet-0.1.4/rtweet/R/rate.limit.R |only rtweet-0.1.4/rtweet/R/search.R | 31 +++-- rtweet-0.1.4/rtweet/R/stream.R | 10 - rtweet-0.1.4/rtweet/R/tokens.R | 71 ++++++------ rtweet-0.1.4/rtweet/R/users.R | 6 - rtweet-0.1.4/rtweet/R/utils.R | 162 ++++++++++------------------ rtweet-0.1.4/rtweet/README.md | 69 +++++++++-- rtweet-0.1.4/rtweet/man/TWIT.Rd | 2 rtweet-0.1.4/rtweet/man/create_token.Rd | 18 +-- rtweet-0.1.4/rtweet/man/fetch_tokens.Rd |only rtweet-0.1.4/rtweet/man/followers_get.Rd |only rtweet-0.1.4/rtweet/man/from_js.Rd |only rtweet-0.1.4/rtweet/man/make_url.Rd | 7 + rtweet-0.1.4/rtweet/man/rate_limit.Rd | 2 rtweet-0.1.4/rtweet/man/search_tweets.Rd | 3 rtweet-0.1.4/rtweet/man/stream_params.Rd |only rtweet-0.1.4/rtweet/man/stream_tweets.Rd | 3 rtweet-0.1.4/rtweet/man/tweets_df.Rd |only rtweet-0.1.4/rtweet/man/user_df.Rd |only 32 files changed, 269 insertions(+), 227 deletions(-)
Title: Local Approximate Gaussian Process Regression
Description: Performs approximate GP regression for large computer experiments and spatial datasets. The approximation is based on finding small local designs for prediction (independently) at particular inputs. OpenMP and SNOW parallelization are supported for prediction over a vast out-of-sample testing set; GPU acceleration is also supported for an important subroutine. OpenMP and GPU features may require special compilation. An interface to lower-level (full) GP inference and prediction is also provided, as are associated wrapper routines for blackbox optimization under mixed equality and inequality constraints via an augmented Lagrangian scheme, and for large scale computer model calibration.
Author: Robert B. Gramacy <rbg@vt.edu>
Maintainer: Robert B. Gramacy <rbg@vt.edu>
Diff between laGP versions 1.2-1 dated 2015-09-18 and 1.3 dated 2016-08-07
ChangeLog | 19 +++++ DESCRIPTION | 15 ++-- MD5 | 99 +++++++++++++------------- NAMESPACE | 2 R/calib.R | 2 R/gp.R | 19 ++--- R/gp_sep.R | 15 ++-- R/laGP.R | 36 +++++---- R/laGP_sep.R | 10 +- R/optim.R | 193 +++++++++++++++++++++++++++++++++++++--------------- R/parallel.R | 4 - R/prior.R | 2 R/util.R | 2 build/vignette.rds |binary demo/00Index | 4 - demo/ALfhat.R | 2 demo/GSBP.R |only demo/LAH.R |only inst/CITATION |only inst/doc/laGP.Rnw | 33 +++++--- inst/doc/laGP.pdf |binary man/aGP.Rd | 36 +++++---- man/alcGP.Rd | 23 +++--- man/darg.Rd | 2 man/deleteGP.Rd | 2 man/discrep.est.Rd | 26 ++++--- man/distance.Rd | 4 - man/fcalib.Rd | 37 +++++---- man/laGP.Rd | 40 ++++++---- man/llikGP.Rd | 2 man/mleGP.Rd | 2 man/newGP.Rd | 2 man/optim.auglag.Rd | 124 +++++++++++++++++++++------------ man/predGP.Rd | 2 src/covar.c | 15 +--- src/covar.h | 6 - src/covar_sep.c | 36 ++++++++- src/covar_sep.h | 6 - src/gamma.c | 2 src/gp.c | 31 ++++---- src/gp.h | 4 - src/gp_sep.c | 32 ++++---- src/gp_sep.h | 2 src/ieci.c | 67 +++++++++++------- src/ieci.h | 11 +- src/laGP.c | 6 - src/laGP_sep.c | 2 src/rbetter.c | 2 src/util.c | 27 +++++++ src/util.h | 2 vignettes/laGP.Rnw | 33 +++++--- vignettes/laGP.bib | 21 +---- 52 files changed, 656 insertions(+), 408 deletions(-)
Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end
is provided by 'r' (aka 'littler') as a lightweight binary wrapper around
the GNU R language and environment for statistical computing and graphics.
While R can be used in batch mode, the r binary adds full support for
both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path
expression as the first line in scripts) as well as command-line use in
standard Unix pipelines. In other words, r provides the R language without
the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between littler versions 0.3.0 dated 2015-10-29 and 0.3.1 dated 2016-08-07
littler-0.3.0/littler/src/config.h |only littler-0.3.1/littler/ChangeLog | 73 +++++++++ littler-0.3.1/littler/DESCRIPTION | 16 +- littler-0.3.1/littler/MD5 | 59 ++++---- littler-0.3.1/littler/NAMESPACE | 6 littler-0.3.1/littler/R/init.R | 9 - littler-0.3.1/littler/R/test.R | 21 ++ littler-0.3.1/littler/README.md | 39 ++++- littler-0.3.1/littler/build/vignette.rds |binary littler-0.3.1/littler/cleanup | 2 littler-0.3.1/littler/configure | 3 littler-0.3.1/littler/configure.ac | 3 littler-0.3.1/littler/inst/NEWS.Rd | 38 +++++ littler-0.3.1/littler/inst/doc/littler-examples.Rmd | 41 +++-- littler-0.3.1/littler/inst/doc/littler-examples.html | 140 ++++++++++--------- littler-0.3.1/littler/inst/examples/check.r | 51 ++++-- littler-0.3.1/littler/inst/examples/dratInsert.r | 26 ++- littler-0.3.1/littler/inst/examples/install2.r | 38 +++-- littler-0.3.1/littler/inst/examples/installGithub.r | 16 +- littler-0.3.1/littler/inst/examples/installRepo.r | 17 +- littler-0.3.1/littler/inst/examples/rcc.r |only littler-0.3.1/littler/inst/examples/render.r |only littler-0.3.1/littler/inst/examples/rhome.r |only littler-0.3.1/littler/inst/examples/roxy.r | 2 littler-0.3.1/littler/man/littler.Rd | 1 littler-0.3.1/littler/man/r.Rd |only littler-0.3.1/littler/src/Makevars.in | 2 littler-0.3.1/littler/src/littler.c | 4 littler-0.3.1/littler/src/scripts/autoloads.R | 26 +++ littler-0.3.1/littler/src/scripts/ldflags.R | 19 ++ littler-0.3.1/littler/src/scripts/littler.R | 28 +++ littler-0.3.1/littler/tests/simpleTests.R | 13 + littler-0.3.1/littler/vignettes/littler-examples.Rmd | 41 +++-- 33 files changed, 527 insertions(+), 207 deletions(-)