Title: Sean 'Lahman' Baseball Database
Description: Provides the tables from the 'Sean Lahman Baseball Database' as
a set of R data.frames. It uses the data on pitching, hitting and fielding
performance and other tables from 1871 through 2015, as recorded in the 2016
version of the database.
Author: Michael Friendly [aut], Dennis Murphy [ctb], Martin Monkman [ctb], Chris
Dalzell [cre, ctb]
Maintainer: Chris Dalzell <cdalzell@gmail.com>
Diff between Lahman versions 4.0-1 dated 2015-09-15 and 5.0-0 dated 2016-08-27
Lahman-4.0-1/Lahman/README.md |only Lahman-5.0-0/Lahman/DESCRIPTION | 28 - Lahman-5.0-0/Lahman/MD5 | 137 +++--- Lahman-5.0-0/Lahman/NAMESPACE | 11 Lahman-5.0-0/Lahman/NEWS | 17 Lahman-5.0-0/Lahman/R/Label.R | 2 Lahman-5.0-0/Lahman/R/battingStats.R | 4 Lahman-5.0-0/Lahman/R/playerInfo.R | 3 Lahman-5.0-0/Lahman/data/AllstarFull.RData |binary Lahman-5.0-0/Lahman/data/Appearances.RData |binary Lahman-5.0-0/Lahman/data/AwardsManagers.RData |binary Lahman-5.0-0/Lahman/data/AwardsPlayers.RData |binary Lahman-5.0-0/Lahman/data/AwardsShareManagers.RData |binary Lahman-5.0-0/Lahman/data/AwardsSharePlayers.RData |binary Lahman-5.0-0/Lahman/data/Batting.RData |binary Lahman-5.0-0/Lahman/data/BattingPost.RData |binary Lahman-5.0-0/Lahman/data/CollegePlaying.RData |binary Lahman-5.0-0/Lahman/data/Fielding.RData |binary Lahman-5.0-0/Lahman/data/FieldingOF.RData |binary Lahman-5.0-0/Lahman/data/FieldingPost.RData |binary Lahman-5.0-0/Lahman/data/HallOfFame.RData |binary Lahman-5.0-0/Lahman/data/LahmanData.RData |binary Lahman-5.0-0/Lahman/data/Managers.RData |binary Lahman-5.0-0/Lahman/data/ManagersHalf.RData |binary Lahman-5.0-0/Lahman/data/Master.RData |binary Lahman-5.0-0/Lahman/data/Pitching.RData |binary Lahman-5.0-0/Lahman/data/PitchingPost.RData |binary Lahman-5.0-0/Lahman/data/Salaries.RData |binary Lahman-5.0-0/Lahman/data/Schools.RData |binary Lahman-5.0-0/Lahman/data/SeriesPost.RData |binary Lahman-5.0-0/Lahman/data/Teams.RData |binary Lahman-5.0-0/Lahman/data/TeamsFranchises.RData |binary Lahman-5.0-0/Lahman/data/TeamsHalf.RData |binary Lahman-5.0-0/Lahman/data/battingLabels.RData |binary Lahman-5.0-0/Lahman/data/fieldingLabels.RData |binary Lahman-5.0-0/Lahman/data/pitchingLabels.RData |binary Lahman-5.0-0/Lahman/demo/00Index | 1 Lahman-5.0-0/Lahman/demo/lahman-dplyr.R |only Lahman-5.0-0/Lahman/inst/DESC-temp-change-maintainer.txt |only Lahman-5.0-0/Lahman/inst/scripts/LahmanData.R | 30 - Lahman-5.0-0/Lahman/inst/scripts/compress-data.R | 8 Lahman-5.0-0/Lahman/inst/scripts/readLahman.R | 71 +-- Lahman-5.0-0/Lahman/man/AllstarFull.Rd | 148 +++--- Lahman-5.0-0/Lahman/man/Appearances.Rd | 221 +++++----- Lahman-5.0-0/Lahman/man/AwardsManagers.Rd | 100 ++-- Lahman-5.0-0/Lahman/man/AwardsPlayers.Rd | 124 ++--- Lahman-5.0-0/Lahman/man/AwardsShareManagers.Rd | 109 ++-- Lahman-5.0-0/Lahman/man/AwardsSharePlayers.Rd | 177 ++++---- Lahman-5.0-0/Lahman/man/Batting.Rd | 328 ++++++++------ Lahman-5.0-0/Lahman/man/BattingPost.Rd | 190 ++++---- Lahman-5.0-0/Lahman/man/CollegePlaying.Rd | 117 ++--- Lahman-5.0-0/Lahman/man/Fielding.Rd | 184 ++++---- Lahman-5.0-0/Lahman/man/FieldingOF.Rd | 120 ++++- Lahman-5.0-0/Lahman/man/FieldingPost.Rd | 126 +++-- Lahman-5.0-0/Lahman/man/HallOfFame.Rd | 302 +++++++------ Lahman-5.0-0/Lahman/man/Label.Rd | 8 Lahman-5.0-0/Lahman/man/Lahman-package.Rd | 258 +++++------ Lahman-5.0-0/Lahman/man/LahmanData.Rd | 2 Lahman-5.0-0/Lahman/man/Managers.Rd | 327 ++++++++------ Lahman-5.0-0/Lahman/man/ManagersHalf.Rd | 94 ++-- Lahman-5.0-0/Lahman/man/Master.Rd | 180 ++++---- Lahman-5.0-0/Lahman/man/Pitching.Rd | 295 +++++++------ Lahman-5.0-0/Lahman/man/PitchingPost.Rd | 165 +++++-- Lahman-5.0-0/Lahman/man/Salaries.Rd | 206 +++++---- Lahman-5.0-0/Lahman/man/Schools.Rd | 162 +++---- Lahman-5.0-0/Lahman/man/SeriesPost.Rd | 149 +++++- Lahman-5.0-0/Lahman/man/Teams.Rd | 330 +++++++++------ Lahman-5.0-0/Lahman/man/TeamsFranchises.Rd | 90 ++-- Lahman-5.0-0/Lahman/man/TeamsHalf.Rd | 84 ++- Lahman-5.0-0/Lahman/man/battingLabels.Rd | 9 Lahman-5.0-0/Lahman/man/battingStats.Rd | 2 71 files changed, 2806 insertions(+), 2113 deletions(-)
Title: R Commander Plug-in for University Level Applied Statistics
Description: An R Commander "plug-in" extending functionality of linear models and providing an interface to Partial Least Squares Regression and Linear and Quadratic Discriminant analysis. Several statistical summaries are extended, predictions are offered for additional types of analyses, and extra plots, tests and mixed models are available.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [aut]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between RcmdrPlugin.NMBU versions 1.8.5 dated 2016-01-17 and 1.8.6 dated 2016-08-27
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
More information about RcmdrPlugin.NMBU at CRAN
Permanent link
Title: 'surv' Object Confidence Bands Optimized by Area
Description: Given a certain coverage level, obtains simultaneous confidence
bands for the survival and cumulative hazard functions such that the area
between is minimized. Produces an approximate solution based on local time
arguments.
Author: Tom Chen & Sam Tracy
Maintainer: Sam Tracy <stracy@g.harvard.edu>
Diff between optband versions 0.1 dated 2016-08-27 and 0.2 dated 2016-08-27
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NAMESPACE | 1 + R/package_functions.R | 45 ++++++++++++++++++++++++++++++++++++++++----- inst/doc/optci.Rmd | 2 -- inst/doc/optci.html | 9 ++++----- man/cumhaz.var.Rd | 7 +++++++ man/modify.surv.fun.Rd | 6 ++++++ man/opt.ci.Rd | 9 +++++++++ man/psi.Rd | 7 +++++-- man/riemsum.Rd | 5 +++++ man/surv.range.Rd | 13 ++++++++++--- vignettes/optci.Rmd | 2 -- 13 files changed, 102 insertions(+), 34 deletions(-)
Title: Fast Truncated SVD, PCA and Symmetric Eigendecomposition for
Large Dense and Sparse Matrices
Description: Fast and memory efficient methods for truncated singular and
eigenvalue decompositions and principal component analysis of large sparse or
dense matrices.
Author: Jim Baglama [aut, cph],
Lothar Reichel [aut, cph],
B. W. Lewis [aut, cre, cph]
Maintainer: B. W. Lewis <blewis@illposed.net>
Diff between irlba versions 2.0.0 dated 2015-10-11 and 2.1.1 dated 2016-08-27
DESCRIPTION | 30 ++- MD5 | 33 ++-- NAMESPACE | 8 R/eigen.R | 13 + R/irlba.R | 418 +++++++++++++++++++++++++++++++++------------------ R/prcomp.R |only R/utility.R | 27 +-- README.md | 52 ++---- build/vignette.rds |binary inst/doc/irlba.Rnw | 246 ++++++++++++++++++------------ inst/doc/irlba.pdf |binary man/irlba.Rd | 141 ++++++++++------- man/partial_eigen.Rd | 12 + man/prcomp_irlba.Rd |only src |only tests/edge.R |only tests/test.R | 157 ++++++++++++------- vignettes/irlba.Rnw | 246 ++++++++++++++++++------------ 18 files changed, 867 insertions(+), 516 deletions(-)
Title: R Interface to 'FOAAS'
Description: R access to the 'FOAAS' (F... Off As A Service) web service is provided.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between rfoaas versions 1.0.0 dated 2016-08-14 and 1.1.0 dated 2016-08-27
ChangeLog | 12 ++++++++++++ DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/foaas.R | 13 +++++++++++-- README.md | 10 +++++----- man/rfoaas-package.Rd | 15 ++++++++++++++- tests/runTestsAgainstFOAAS.R | 39 +++++++++++++++++++++++---------------- 7 files changed, 76 insertions(+), 35 deletions(-)
Title: Build Regression Models Quickly and Display the Results Using
'ggplot2'
Description: A set of functions to extract results from regression models and
plot the effect size using 'ggplot2' seamlessly. While 'broom' is useful to
convert statistical analysis objects into tidy data frames, 'coefplot' is adept at showing
multivariate regression results. With specific outcome, this package could build regression models
automatically, extract results into a data frame and provide a quicker way to summarize
models' statistical findings using 'ggplot2'.
Author: Xikun Han [aut, cre]
Maintainer: Xikun Han <hanxikun2014@163.com>
Diff between quickReg versions 0.0.3 dated 2016-04-26 and 1.0.0 dated 2016-08-27
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 6 ++++++ R/display.data.frame.R | 22 ++++++++++++---------- R/reg.R | 16 ++++++++++------ build/vignette.rds |binary inst/doc/quickReg.html | 37 ++++++++++++++++++------------------- man/display.data.frame.Rd | 2 +- 8 files changed, 57 insertions(+), 46 deletions(-)
Title: Generalized Partial Linear Models (GPLM)
Description: Provides functions for estimating a generalized partial
linear model, a semiparametric variant of the generalized linear model
(GLM) which replaces the linear predictor by the sum of a linear
and a nonparametric function.
Author: Marlene Mueller
Maintainer: Marlene Mueller <marlene.mueller@gmx.de>
Diff between gplm versions 0.7-2 dated 2014-05-07 and 0.7-3 dated 2016-08-27
gplm-0.7-2/gplm/vignettes/dcu.bst |only gplm-0.7-3/gplm/CHANGES | 5 +++ gplm-0.7-3/gplm/DESCRIPTION | 15 ++++++---- gplm-0.7-3/gplm/MD5 | 19 ++++++------ gplm-0.7-3/gplm/NAMESPACE | 1 gplm-0.7-3/gplm/R/kernel.constants.R | 9 +++--- gplm-0.7-3/gplm/build/vignette.rds |binary gplm-0.7-3/gplm/inst/doc/gplm-examples.Rnw | 42 ++++++++++++++-------------- gplm-0.7-3/gplm/inst/doc/gplm-examples.pdf |binary gplm-0.7-3/gplm/man/kernel.constants.Rd | 2 - gplm-0.7-3/gplm/vignettes/gplm-examples.Rnw | 42 ++++++++++++++-------------- 11 files changed, 72 insertions(+), 63 deletions(-)
Title: Calculating Proportionality Between Vectors of Compositional
Data
Description: The bioinformatic evaluation of gene co-expression often begins with
correlation-based analyses. However, this approach lacks statistical validity
when applied to relative data, including those biological count data produced by
microarray assays or high-throughput RNA-sequencing. As an alternative, Lovell
et al propose a proportionality metric, phi, derived from compositional data
analysis, a branch of math dealing specifically with relative data. In a
subsequent publication, Erb and Nicodemus expounded these efforts by elaborating
on another proportionality metric, rho. This package introduces a programmatic
framework for the calculation of feature dependence through proportionality, as
discussed in the cited publications.
Author: Thomas Quinn [aut, cre],
David Lovell [aut]
Maintainer: Thomas Quinn <contacttomquinn@gmail.com>
Diff between propr versions 1.1.0 dated 2016-07-06 and 2.0.0 dated 2016-08-27
propr-1.1.0/propr/R/propr-backend.R |only propr-1.1.0/propr/R/propr-classes.R |only propr-1.1.0/propr/R/propr-methods.R |only propr-1.1.0/propr/R/propr-perb.R |only propr-1.1.0/propr/R/propr-phit.R |only propr-2.0.0/propr/DESCRIPTION | 15 - propr-2.0.0/propr/MD5 | 54 ++- propr-2.0.0/propr/NAMESPACE | 5 propr-2.0.0/propr/NEWS.md | 35 ++ propr-2.0.0/propr/R/RcppExports.R |only propr-2.0.0/propr/R/backend.R |only propr-2.0.0/propr/R/classes.R |only propr-2.0.0/propr/R/methods.R |only propr-2.0.0/propr/R/perb.R |only propr-2.0.0/propr/R/phit.R |only propr-2.0.0/propr/README.md | 64 +--- propr-2.0.0/propr/inst/doc/propr-vignette.R | 31 +- propr-2.0.0/propr/inst/doc/propr-vignette.Rmd | 81 +++-- propr-2.0.0/propr/inst/doc/propr-vignette.html | 340 ++++++++++--------------- propr-2.0.0/propr/man/perb.Rd | 32 -- propr-2.0.0/propr/man/phit.Rd | 23 - propr-2.0.0/propr/man/propr-class.Rd | 25 - propr-2.0.0/propr/man/propr.Rd | 20 - propr-2.0.0/propr/man/proprALR.Rd | 2 propr-2.0.0/propr/man/proprCLR.Rd | 2 propr-2.0.0/propr/man/proprPairs.Rd | 2 propr-2.0.0/propr/man/proprPerb.Rd | 4 propr-2.0.0/propr/man/proprPhit.Rd | 4 propr-2.0.0/propr/man/proprSym.Rd | 2 propr-2.0.0/propr/man/proprTri.Rd | 2 propr-2.0.0/propr/man/proprVLR.Rd | 2 propr-2.0.0/propr/src |only propr-2.0.0/propr/tests/testthat/test-Rcpp.R |only propr-2.0.0/propr/vignettes/propr-vignette.Rmd | 81 +++-- 34 files changed, 418 insertions(+), 408 deletions(-)
Title: Interactive Heat Maps Using 'plotly'
Description: Create interactive heatmaps that are usable from the R console,
in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps.
Hover the mouse pointer over a cell to show details or drag a rectangle to
zoom. A heatmap is a popular graphical method for visualizing high-dimensional
data, in which a table of numbers are encoded as a grid of colored cells. The
rows and columns of the matrix are ordered to highlight patterns and are often
accompanied by dendrograms. Heatmaps are used in many fields for visualizing
observations, correlations, missing values patterns, and more. Interactive
heatmaps allow the inspection of specific value by hovering the mouse over a
cell, as well as zooming into a region of the heatmap by dragging a rectangle
around the relevant area. This work is based on the 'ggplot2' and 'plotly.js'
engine. It produces similar heatmaps as 'd3heatmap', with the advantage of speed
('plotly.js' is able to handle larger size matrix), and the ability to zoom from
the dendrogram panes.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com)
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between heatmaply versions 0.3.2 dated 2016-05-26 and 0.5.0 dated 2016-08-27
ChangeLog | 272 ++++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 20 +-- MD5 | 33 +++-- NAMESPACE | 4 NEWS | 85 ++++++++++++++- NEWS.md | 118 ++++++++++++++++++++ R/ggheatmap.R |only R/heatmaply.R | 263 +++++++++++++++++++++++++++++++++++++--------- R/heatmapr.R | 84 ++++++++++++++ R/zzz.R | 2 README.md | 18 ++- inst/doc/heatmaply.R | 53 +++++++++ inst/doc/heatmaply.Rmd | 84 ++++++++++++++ inst/doc/heatmaply.html | 173 +++++++++++++++++++++++++----- man/ggheatmap.Rd |only man/heatmaply.Rd | 55 +++++++++ man/heatmapr.Rd | 10 + man/is.heatmapr.Rd |only vignettes/heatmaply.Rmd | 84 ++++++++++++++ 19 files changed, 1221 insertions(+), 137 deletions(-)
Title: Extending R's Dendrogram Functionality
Description: Offers a set of functions for extending
dendrogram objects in R, letting you visualize and compare trees of
hierarchical clusterings. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different dendrograms to one another.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com),
Gavin Simpson [ctb],
Gregory Jefferis [aut, ctb] (imported code from his dendroextras
package),
Marco Gallotta [ctb] (a.k.a: marcog),
Johan Renaudie [ctb] (https://github.com/plannapus),
The R Core Team [ctb] (Thanks for the Infastructure, and code in the
examples),
Kurt Hornik [ctb],
Uwe Ligges [ctb],
Andrej-Nikolai Spiess [ctb],
Steve Horvath [ctb],
Peter Langfelder [ctb],
skullkey [ctb],
Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram),
Andrie de Vries [ctb] (ggdendro author),
Zuguang Gu [ctb] (circlize author),
Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between dendextend versions 1.2.0 dated 2016-06-22 and 1.3.0 dated 2016-08-27
ChangeLog | 31 ++++++++++++ DESCRIPTION | 10 +-- MD5 | 29 +++++------ NAMESPACE | 2 NEWS | 13 +++++ NEWS.md | 13 +++++ R/attr_access.R | 2 R/labels.R | 85 +++++++++++++++++++++++++++++++++ R/labels_colors.R | 3 - inst/doc/Cluster_Analysis.html | 4 - inst/doc/FAQ.html | 4 - inst/doc/Quick_Introduction.html | 4 - inst/doc/introduction.html | 14 ++--- man/assign_values_to_leaves_nodePar.Rd | 2 man/set_labels.Rd |only tests/testthat/test-labels_colors.R | 19 +++++++ 16 files changed, 202 insertions(+), 33 deletions(-)
Title: Analysis of Stable Matchings
Description: Implements structural estimators to correct for
the sample selection bias from observed outcomes in matching
markets. This includes one-sided matching of agents into
groups as well as two-sided matching of students to schools.
The package also contains algorithms to find stable matchings
in the three most common matching problems: the stable roommates
problem, the college admissions problem, and the house
allocation problem.
Author: Thilo Klein
Maintainer: Thilo Klein <thilo@klein.uk>
Diff between matchingMarkets versions 0.3-1 dated 2016-08-21 and 0.3-2 dated 2016-08-27
matchingMarkets-0.3-1/matchingMarkets/R/mfx.R |only matchingMarkets-0.3-1/matchingMarkets/man/mfx.Rd |only matchingMarkets-0.3-2/matchingMarkets/DESCRIPTION | 14 matchingMarkets-0.3-2/matchingMarkets/MD5 | 39 matchingMarkets-0.3-2/matchingMarkets/NAMESPACE | 6 matchingMarkets-0.3-2/matchingMarkets/R/khb.R | 14 matchingMarkets-0.3-2/matchingMarkets/R/stabit.R | 279 +++-- matchingMarkets-0.3-2/matchingMarkets/R/stabit2.R | 471 +++++++--- matchingMarkets-0.3-2/matchingMarkets/README.md | 2 matchingMarkets-0.3-2/matchingMarkets/data/klein15a.RData |binary matchingMarkets-0.3-2/matchingMarkets/inst/CITATION |only matchingMarkets-0.3-2/matchingMarkets/inst/doc/matching.pdf |binary matchingMarkets-0.3-2/matchingMarkets/inst/java/smi.jar |binary matchingMarkets-0.3-2/matchingMarkets/man/khb.Rd | 11 matchingMarkets-0.3-2/matchingMarkets/man/matchingMarkets-package.Rd | 4 matchingMarkets-0.3-2/matchingMarkets/man/stabit.Rd | 103 +- matchingMarkets-0.3-2/matchingMarkets/man/stabit2.Rd | 57 - matchingMarkets-0.3-2/matchingMarkets/src/stabitCpp.cpp | 128 -- matchingMarkets-0.3-2/matchingMarkets/src/stabitCpp2.cpp | 95 -- matchingMarkets-0.3-2/matchingMarkets/src/stabitCpp3.cpp | 203 ---- matchingMarkets-0.3-2/matchingMarkets/vignettes/Sections/5_Application.Rnw | 15 matchingMarkets-0.3-2/matchingMarkets/vignettes/matching.bib | 2 22 files changed, 740 insertions(+), 703 deletions(-)
More information about matchingMarkets at CRAN
Permanent link
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<http://dx.doi.org/10.1198/016214507000001337>
for linear models or mixtures of g-priors in GLMs of Li and Clyde (2015)
<http://arxiv.org/abs/1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient hash table.
Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <http://dx.doi.org/10.1198/jcgs.2010.09049>.
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Diff between BAS versions 1.3.0 dated 2016-07-16 and 1.4.0 dated 2016-08-27
BAS-1.3.0/BAS/INDEX |only BAS-1.4.0/BAS/DESCRIPTION | 52 ++++----- BAS-1.4.0/BAS/MD5 | 73 ++++++------ BAS-1.4.0/BAS/NAMESPACE | 5 BAS-1.4.0/BAS/NEWS.md |only BAS-1.4.0/BAS/R/as.matrix.R | 2 BAS-1.4.0/BAS/R/bas.R | 33 ++++- BAS-1.4.0/BAS/R/bas.gglm.R | 90 +++++++++++---- BAS-1.4.0/BAS/R/betapriors.R | 35 ++++-- BAS-1.4.0/BAS/R/coefficients.R | 10 - BAS-1.4.0/BAS/R/confint.coef.R | 62 +++++++++- BAS-1.4.0/BAS/R/cv.summary.R |only BAS-1.4.0/BAS/R/predict.bma.R | 46 ++++++-- BAS-1.4.0/BAS/inst/doc/BAS-vignette.R | 7 - BAS-1.4.0/BAS/inst/doc/BAS-vignette.Rmd | 32 +++-- BAS-1.4.0/BAS/inst/doc/BAS-vignette.html | 177 ++++++++++++++++--------------- BAS-1.4.0/BAS/man/as.matrix.Rd | 20 +-- BAS-1.4.0/BAS/man/bas.Rd | 4 BAS-1.4.0/BAS/man/bas.glm.Rd | 17 +- BAS-1.4.0/BAS/man/beta.prime.Rd | 4 BAS-1.4.0/BAS/man/bin2int.Rd | 5 BAS-1.4.0/BAS/man/cchpriors.Rd | 4 BAS-1.4.0/BAS/man/coefpriors.Rd | 2 BAS-1.4.0/BAS/man/cv.summary.bma.Rd | 10 + BAS-1.4.0/BAS/man/hyper-g-n.Rd | 4 BAS-1.4.0/BAS/man/intrinsic.Rd | 6 - BAS-1.4.0/BAS/man/plot-confint.Rd |only BAS-1.4.0/BAS/man/plot.coefficients.Rd | 1 BAS-1.4.0/BAS/man/predict.basglm.Rd | 35 ++++-- BAS-1.4.0/BAS/man/predict.bma.Rd | 8 - BAS-1.4.0/BAS/man/testBF-prior.Rd |only BAS-1.4.0/BAS/src/Makevars | 1 BAS-1.4.0/BAS/src/Makevars.win | 1 BAS-1.4.0/BAS/src/bas-glm.h | 2 BAS-1.4.0/BAS/src/betapriorfamily.c | 26 +++- BAS-1.4.0/BAS/src/betapriorfamily.h | 4 BAS-1.4.0/BAS/src/family.c | 18 +-- BAS-1.4.0/BAS/src/family.h | 12 +- BAS-1.4.0/BAS/src/glm_lpy.c | 10 - BAS-1.4.0/BAS/vignettes/BAS-vignette.Rmd | 32 +++-- 40 files changed, 531 insertions(+), 319 deletions(-)