Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using 'LAPACK' and 'SuiteSparse'.
Author: Douglas Bates <bates@stat.wisc.edu> and Martin Maechler
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
Diff between Matrix versions 1.2-6 dated 2016-05-03 and 1.2-7 dated 2016-08-28
DESCRIPTION | 9 ++-- MD5 | 58 ++++++++++++++++---------------- R/Auxiliaries.R | 5 ++ R/KhatriRao.R | 24 +++++++++---- R/bandSparse.R | 19 ++++++---- R/spModels.R | 9 +--- R/zzz.R | 25 ++++++++----- build/vignette.rds |binary inst/NEWS.Rd | 19 ++++++++++ inst/doc/Comparisons.pdf |binary inst/doc/Design-issues.pdf |binary inst/doc/Intro2Matrix.pdf |binary inst/doc/Introduction.pdf |binary inst/doc/sparseModels.pdf |binary inst/po/en@quot/LC_MESSAGES/Matrix.mo |binary inst/po/en@quot/LC_MESSAGES/R-Matrix.mo |binary inst/po/fr/LC_MESSAGES/Matrix.mo |binary inst/po/pl/LC_MESSAGES/Matrix.mo |binary inst/test-tools-1.R | 16 ++++++++ man/KhatriRao.Rd | 19 ++++++++-- man/bandSparse.Rd | 7 ++- man/bdiag.Rd | 36 +++++++++++++++++++ po/Matrix.pot | 14 +++---- po/R-Matrix.pot | 4 +- po/de.po | 12 +++--- po/fr.po | 12 +++--- po/ko.po | 12 +++--- po/pl.po | 12 +++--- src/Mutils.c | 5 +- src/dgCMatrix.c | 4 ++ 30 files changed, 216 insertions(+), 105 deletions(-)
Title: Serialization Interface for Large List Objects
Description: Functions to write or append a R list to a file, as well as read, remove, modify elements from it without restoring the whole list.
Author: Yuchun Zhang
Maintainer: Yuchun Zhang <yczhangvrc@gmail.com>
Diff between largeList versions 0.1.0 dated 2016-07-20 and 0.2.0 dated 2016-08-28
largeList-0.1.0/largeList/R/Exports.R |only largeList-0.2.0/largeList/DESCRIPTION | 13 largeList-0.2.0/largeList/MD5 | 48 +- largeList-0.2.0/largeList/NAMESPACE | 19 largeList-0.2.0/largeList/R/description.R |only largeList-0.2.0/largeList/R/exports.R |only largeList-0.2.0/largeList/R/operatorOverload.R |only largeList-0.2.0/largeList/man/getList.Rd |only largeList-0.2.0/largeList/man/getListLength.Rd |only largeList-0.2.0/largeList/man/getListName.Rd |only largeList-0.2.0/largeList/man/largeList.Rd | 122 ++---- largeList-0.2.0/largeList/man/length.largeList.Rd |only largeList-0.2.0/largeList/man/modifyInList.Rd |only largeList-0.2.0/largeList/man/modifyNameInList.Rd |only largeList-0.2.0/largeList/man/names-set-.largeList.Rd |only largeList-0.2.0/largeList/man/names.largeList.Rd |only largeList-0.2.0/largeList/man/print.largeList.Rd |only largeList-0.2.0/largeList/man/readList.Rd |only largeList-0.2.0/largeList/man/removeFromList.Rd |only largeList-0.2.0/largeList/man/saveList.Rd |only largeList-0.2.0/largeList/man/sub-.largeList.Rd |only largeList-0.2.0/largeList/man/sub-sub-.largeList.Rd |only largeList-0.2.0/largeList/man/sub-subset-.largeList.Rd |only largeList-0.2.0/largeList/man/subset-.largeList.Rd |only largeList-0.2.0/largeList/src/checkType.cpp |only largeList-0.2.0/largeList/src/getListLength.cpp | 22 - largeList-0.2.0/largeList/src/getListName.cpp | 47 +- largeList-0.2.0/largeList/src/largeList.h | 50 +- largeList-0.2.0/largeList/src/modifyInList.cpp |only largeList-0.2.0/largeList/src/modifyNameInList.cpp |only largeList-0.2.0/largeList/src/readList.cpp | 174 ++++----- largeList-0.2.0/largeList/src/readObject.cpp | 157 ++++---- largeList-0.2.0/largeList/src/removeFromList.cpp | 213 +++++------ largeList-0.2.0/largeList/src/saveList.cpp | 190 ++++----- largeList-0.2.0/largeList/src/serializedLength.cpp |only largeList-0.2.0/largeList/src/utils.cpp | 325 ++++++++++------- largeList-0.2.0/largeList/src/writeObject.cpp | 123 +++--- 37 files changed, 814 insertions(+), 689 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors. The package has been developed and tested for binary data from GENEActiv and GENEA devices and .csv-export data from Actigraph devices. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Severine Sabia [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.2-8 dated 2016-05-24 and 1.2-10 dated 2016-08-28
DESCRIPTION | 8 MD5 | 56 - NAMESPACE | 2 R/POSIXtime2iso8601.R |only R/chartime2iso8601.R |only R/g.analyse.R | 1834 ++++++++++++++++++------------------- R/g.calibrate.R | 1045 ++++++++++----------- R/g.detecmidnight.R | 68 + R/g.getbout.R | 111 +- R/g.getmeta.R | 2222 +++++++++++++++++++++++----------------------- R/g.impute.R | 377 +++---- R/g.metric.R | 60 - R/g.part1.R | 629 ++++++------- R/g.part2.R | 308 +++--- R/g.part3.R | 163 +-- R/g.part4.R | 9 R/g.shell.GGIR.R | 55 - R/g.sib.det.R | 27 R/g.sib.plot.R | 24 R/g.sib.sum.R | 23 R/iso8601chartime2POSIX.R |only inst/NEWS.Rd | 19 man/GGIR-package.Rd | 16 man/g.analyse.Rd | 27 man/g.getbout.Rd |only man/g.getmeta.Rd | 27 man/g.impute.Rd | 159 +-- man/g.part1.Rd | 20 man/g.part2.Rd | 20 man/g.part3.Rd | 5 man/g.shell.GGIR.Rd | 5 31 files changed, 3780 insertions(+), 3539 deletions(-)
More information about censusGeography at CRAN
Permanent link
Title: Access to Clarifai API
Description: Get description of images from Clarifai API. For more information,
see http://clarifai.com. Clarifai uses a large deep learning cloud to come
up with descriptive labels of the things in an image. It also provides how
confident it is about each of the labels.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between clarifai versions 0.3.1 dated 2016-08-11 and 0.4.0 dated 2016-08-28
DESCRIPTION | 6 +-- MD5 | 47 ++++++++++++++----------- NAMESPACE | 1 NEWS.md | 8 ++++ R/clarifai.R | 69 +++++++++++++++++++++++++++++++++++++- R/feedback.R | 23 +++++++----- R/get_color.R | 19 +++------- R/get_color_urls.R |only R/get_info.R | 13 +++---- R/get_langs.R | 13 +++---- R/get_token.R | 12 ++---- R/get_usage.R | 15 +++----- R/tag_image_urls.R | 53 +++++++++++++++++------------ R/tag_images.R | 35 +++++++++---------- man/clarifai_GET.Rd |only man/clarifai_POST.Rd |only man/clarifai_check_results.Rd |only man/feedback.Rd | 18 ++++++--- man/get_color.Rd | 4 +- man/get_color_urls.Rd |only man/get_info.Rd | 5 ++ man/get_langs.Rd | 5 ++ man/get_token.Rd | 5 ++ man/get_usage.Rd | 7 ++- man/tag_image_urls.Rd | 27 +++++++++++--- man/tag_images.Rd | 14 ++++++- tests/testthat/clarifai_secret_id | 2 - 27 files changed, 264 insertions(+), 137 deletions(-)
Title: Conduct Univariate and Bivariate Wavelet Analyses
Description: This is a port of the WTC MATLAB package written by Aslak Grinsted
and the wavelet program written by Christopher Torrence and Gibert P.
Compo. This package can be used to perform univariate and bivariate
(cross-wavelet, wavelet coherence, wavelet clustering) analyses.
Author: Tarik C. Gouhier, Aslak Grinsted, Viliam Simko
Maintainer: Tarik C. Gouhier <tarik.gouhier@gmail.com>
Diff between biwavelet versions 0.20.7 dated 2016-06-02 and 0.20.10 dated 2016-08-28
DESCRIPTION | 8 +++--- MD5 | 18 +++++++-------- R/plot.biwavelet.R | 31 ++++++++++++++++++-------- R/wtc.R | 53 ++++++++++++++++++++++++---------------------- README.md | 2 - inst/CITATION | 6 ++--- inst/NEWS.Rd | 30 ++++++++++++++++++++++++++ man/plot.biwavelet.Rd | 12 ++++++---- man/wtc.Rd | 14 ++++++------ src/rcpp_row_quantile.cpp | 6 ++++- 10 files changed, 114 insertions(+), 66 deletions(-)
Title: Discrete Prolate Spheroidal (Slepian) Sequence Regression
Smoothers
Description: Interface for creation of 'slp' class smoother objects for
use in Generalized Additive Models (as implemented by packages
'gam' and 'mgcv').
Author: Wesley Burr, with contributions from Karim Rahim
Maintainer: Wesley Burr <wesley.burr@gmail.com>
Diff between slp versions 1.0-3 dated 2014-07-19 and 1.0-5 dated 2016-08-28
DESCRIPTION | 6 ++--- MD5 | 12 +++++------ NAMESPACE | 1 R/slp-gam.R | 56 ++++++++++++++++++++++++++++++++--------------------- man/slp-gam.Rd | 4 ++- man/slp-package.Rd | 4 +-- src/dpss.f90 | 4 +-- 7 files changed, 51 insertions(+), 36 deletions(-)
Title: A Server-Side File System Viewer for Shiny
Description: Provides functionality for client-side navigation of
the server side file system in shiny apps. In case the app is running
locally this gives the user direct access to the file system without the
need to "download" files to a temporary location. Both file and folder
selection as well as file saving is available.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between shinyFiles versions 0.6.0 dated 2015-03-26 and 0.6.2 dated 2016-08-28
DESCRIPTION | 11 ++--- MD5 | 42 ++++++++++---------- NAMESPACE | 2 R/aaa.R | 20 ++++++++- R/dirchoose.R | 9 +--- R/filechoose.R | 16 +++---- R/filesave.R | 7 +-- README.md | 5 +- inst/example/server.R | 2 inst/www/shinyFiles.js | 4 + inst/www/styles.css | 20 +++++---- man/dirCreator.Rd | 8 +-- man/dirGetter.Rd | 10 ++-- man/fileGetter.Rd | 16 +++---- man/formatFiletype.Rd | 4 - man/getVolumes.Rd | 6 +- man/shinyFiles-buttons.Rd | 86 +++++++++++++++++++----------------------- man/shinyFiles-observers.Rd | 89 ++++++++++++++++++++------------------------ man/shinyFiles-parsers.Rd | 44 +++++++++------------ man/shinyFilesExample.Rd | 23 +++-------- man/traverseDirs.Rd | 12 ++--- man/updateChildren.Rd | 4 - 22 files changed, 218 insertions(+), 222 deletions(-)
Title: Multivariate Nonparametric Methods
Description: A collection of multivariate nonparametric methods, selected in part to support an MS level course in nonparametric statistical methods. Methods include adjustments for multiple comparisons, implementation of multivariate Mann-Whitney-Wilcoxon testing, inversion of these tests to produce a confidence region, some permutation tests for linear models, and some algorithms for calculating exact probabilities associated with one- and two- stage testing involving Mann-Whitney-Wilcoxon statistics.
Author: John E. Kolassa & Stephane Jankowski
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between MultNonParam versions 1.2.1 dated 2015-10-07 and 1.2.3 dated 2016-08-28
DESCRIPTION | 8 ++++---- MD5 | 21 ++++++++++++++------- R/functions.R | 34 ---------------------------------- R/probest.R |only R/symscorestat.R | 12 ++++++++---- inst/Makefile | 4 ++++ inst/lastinput |only inst/probest.R |only inst/temp.csv |only inst/test.csv |only inst/testaov.f90 |only inst/testprobest.f90 |only src/aovp.f90 | 3 ++- src/probest.f90 | 15 ++++++++++----- src/signtestperm.f90 | 29 ++++++++++++++++++++--------- 15 files changed, 62 insertions(+), 64 deletions(-)
Title: Conditional Random Fields
Description: Implements modeling and computational tools for conditional
random fields (CRF) model as well as other probabilistic undirected
graphical models of discrete data with pairwise and unary potentials.
Author: Ling-Yun Wu [aut, cre]
Maintainer: Ling-Yun Wu <wulingyun@gmail.com>
Diff between CRF versions 0.3-10 dated 2016-06-04 and 0.3-11 dated 2016-08-28
DESCRIPTION | 15 +++++++++------ MD5 | 25 +++++++++++++++---------- R/CRF-package.R | 8 ++++---- README.md |only build |only data/Chain.RData |binary data/Clique.RData |binary data/Loop.RData |binary data/Rain.RData |binary data/Small.RData |binary data/Tree.RData |binary inst |only man/CRF-package.Rd | 4 ++-- man/Rain.Rd | 4 ++-- vignettes |only 15 files changed, 32 insertions(+), 24 deletions(-)
Title: R Tools for Inferring New Immunoglobulin Alleles from Rep-Seq
Data
Description: Infers the V genotype of an individual from immunoglobulin (Ig)
repertoire-sequencing (Rep-Seq) data, including detection of any novel
alleles. This information is then used to correct existing V allele calls
from among the sample sequences.
Author: Daniel Gadala-Maria [aut, cre],
Jason Vander Heiden [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Daniel Gadala-Maria <daniel.gadala-maria@yale.edu>
Diff between tigger versions 0.2.7 dated 2016-07-24 and 0.2.8 dated 2016-08-28
DESCRIPTION | 17 ++++++++--------- MD5 | 10 +++++----- NAMESPACE | 6 ++++-- NEWS.md | 6 ++++++ R/tigger.R | 7 +++---- inst/doc/Tigger-Vignette.pdf |binary 6 files changed, 26 insertions(+), 20 deletions(-)
Title: Statistical Modeling
Description: A collection of algorithms and functions to aid statistical modeling. Includes growth curve comparisons, limiting dilution analysis (aka ELDA), mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss quadrature and a secure convergence algorithm for nonlinear models. Includes advanced generalized linear model functions that implement secure convergence, dispersion modeling and Tweedie power-law families.
Author: Gordon Smyth [cre, aut], Yifang Hu [ctb], Peter Dunn [ctb], Belinda Phipson [ctb], Yunshun Chen [ctb]
Maintainer: Gordon Smyth <smyth@wehi.edu.au>
Diff between statmod versions 1.4.25 dated 2016-08-05 and 1.4.26 dated 2016-08-28
statmod-1.4.25/statmod/src/gaussq.f |only statmod-1.4.26/statmod/DESCRIPTION | 8 +- statmod-1.4.26/statmod/MD5 | 10 +-- statmod-1.4.26/statmod/R/gaussquad.R | 54 +++++++++---------- statmod-1.4.26/statmod/inst/NEWS | 4 + statmod-1.4.26/statmod/src/gaussq2.f |only statmod-1.4.26/statmod/tests/statmod-Tests.Rout.save | 10 +-- 7 files changed, 45 insertions(+), 41 deletions(-)
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, ctb],
Wouter Thielen [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between quantmod versions 0.4-5 dated 2015-07-24 and 0.4-6 dated 2016-08-28
DESCRIPTION | 10 +++---- MD5 | 16 +++++------ R/SymbolLookup.R | 4 -- R/addTA.R | 2 - R/getOptionChain.R | 59 ++++++++++++++------------------------------ R/getSymbols.R | 2 - man/OHLC.Transformations.Rd | 15 +++++++++++ man/quantmod-package.Rd | 8 ++--- man/setSymbolLookup.Rd | 3 -- 9 files changed, 53 insertions(+), 66 deletions(-)
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu <chong@purdue.edu>
Maintainer: Chong Gu <chong@purdue.edu>
Diff between gss versions 2.1-5 dated 2015-07-02 and 2.1-6 dated 2016-08-28
ChangeLog | 6 ++++++ DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- src/dcore.f | 2 +- src/ddeev.f | 2 +- src/deval.f | 2 +- src/dgold.f | 2 +- src/dmudr.f | 2 +- src/dmudr0.f | 2 +- src/dmudr1.f | 2 +- src/dsidr.f | 2 +- src/dsidr0.f | 2 +- src/dtrev.f | 2 +- src/gaussq.f | 4 ++-- 14 files changed, 35 insertions(+), 29 deletions(-)
Title: Estimation and Testing of Average Hazard Ratios
Description: Methods for estimation of multivariate average hazard ratios as
defined by Kalbfleisch and Prentice. The underlying survival functions of the
event of interest in each group can be estimated using either the (weighted)
Kaplan-Meier estimator or the Aalen-Johansen estimator for the transition
probabilities in Markov multi-state models. Right-censored and left-truncated
data is supported. Moreover, the difference in restricted mean survival can be
estimated.
Author: Matthias Brueckner <matthias.brueckner@posteo.de>
Maintainer: Matthias Brueckner <matthias.brueckner@posteo.de>
Diff between AHR versions 1.4.1 dated 2016-06-17 and 1.4.2 dated 2016-08-28
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/Makevars | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Read Spectral Data from Foreign Files
Description: Functions for reading and writing foreign files containing
spectral data from spectrometers and their associated software, and output
from simulation models in common use. As well as functions for exchange
of spectral data with other R packages.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.9 dated 2016-08-14 and 0.4.10 dated 2016-08-28
DESCRIPTION | 17 MD5 | 28 NAMESPACE | 1 NEWS | 9 R/read-avaspec-csv.r | 64 R/read-libradtran-vesa.r | 2 R/read-licor-prn.r | 4 R/read-macam-dta.r | 2 R/read-oojaz-file.r | 8 R/read-ooss-file.r | 8 R/read-tuv-file.r | 2 inst/doc/user-guide.pdf | 2846 +++++++++++++++++------------------ man/read_avaspec_csv.Rd | 6 tests/testthat/test-oo.R | 2 vignettes/user-guide-concordance.tex | 2 15 files changed, 1548 insertions(+), 1453 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: R Interface to 'EPP-Lab', a Java Program for Exploratory
Projection Pursuit
Description: An R Interface to 'EPP-lab' v1.0. 'EPP-lab' is a Java program for
projection pursuit using genetic algorithms written by Alain Berro and S. Larabi
Marie-Sainte and is included in the package. The 'EPP-lab' sources are available
under https://github.com/fischuu/EPP-lab.git.
Author: Daniel Fischer, Alain Berro, Klaus Nordhausen, Anne Ruiz-Gazen
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
Diff between REPPlab versions 0.9.3 dated 2015-11-30 and 0.9.4 dated 2016-08-28
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/REPPlab-package.R | 2 +- R/summary.epplab.R | 5 +++-- data/ReliabilityData.rda |binary inst/ChangeLog | 4 ++++ man/REPPlab-package.Rd | 2 +- man/summary.epplab.Rd | 4 +++- 8 files changed, 24 insertions(+), 17 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-21 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-25 1.2
2013-01-29 1.0
2012-05-22 0.8
2011-12-31 0.6.1
2011-12-30 0.6
2011-12-20 0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-02 0.1.0
Title: Robust Sparse K-Means
Description: This RSKC package contains a function RSKC which runs the robust sparse K-means clustering algorithm.
Author: Yumi Kondo
Maintainer: Yumi Kondo <y.kondo@stat.ubc.ca>
Diff between RSKC versions 2.4.1 dated 2014-06-15 and 2.4.2 dated 2016-08-28
DESCRIPTION | 12 ++++++------ MD5 | 13 +++++++------ NAMESPACE | 8 ++++++++ R/CER.R | 13 ++++++++----- inst |only man/RSKC.Rd | 2 ++ man/mfeat.Rd | 2 +- man/optdigit.Rd | 2 +- 8 files changed, 33 insertions(+), 19 deletions(-)
Title: Extract Text and Data from PDF Documents
Description: Utilities based on libpoppler for extracting text,
fonts, attachments and metadata from a pdf file. Also implements
rendering of PDF to bitmaps on supported platforms.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between pdftools versions 0.4 dated 2016-08-12 and 0.5 dated 2016-08-28
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ src/Makevars.win | 9 +++++---- tools/winlibs.R | 6 +++--- 5 files changed, 18 insertions(+), 14 deletions(-)
Title: PANIC Tests of Nonstationarity
Description: A methodology that makes use of the factor structure of large
dimensional panels to understand the nature of nonstationarity inherent
in data. This is referred to as PANIC, Panel Analysis of Nonstationarity
in Idiosyncratic and Common Components.
PANIC (2004)<doi:10.1111/j.1468-0262.2004.00528.x> includes
valid pooling methods that allow panel tests to be constructed.
PANIC (2004) can detect whether the nonstationarity in a series is
pervasive, or variable specific, or both.
PANIC (2010) <doi:10.1017/s0266466609990478> includes
two new tests on the idiosyncratic component that estimates the pooled
autoregressive coefficient and sample moment, respectively. The PANIC
model approximates the number of factors based on
Bai and Ng (2002) <doi:10.1111/1468-0262.00273>.
Author: Steve Bronder <sbronder@stevebronder.com>
Maintainer: Steve Bronder <sbronder@stevebronder.com>
Diff between PANICr versions 0.0.0.5 dated 2015-02-05 and 0.1.3 dated 2016-08-28
PANICr-0.0.0.5/PANICr/R/NIPAagg1.R |only PANICr-0.0.0.5/PANICr/R/NIPAagg2.R |only PANICr-0.0.0.5/PANICr/R/NIPAagg3.R |only PANICr-0.0.0.5/PANICr/data/NIPAagg1.rda |only PANICr-0.0.0.5/PANICr/data/NIPAagg2.rda |only PANICr-0.0.0.5/PANICr/data/NIPAagg3.rda |only PANICr-0.0.0.5/PANICr/man/NIPAagg1.Rd |only PANICr-0.0.0.5/PANICr/man/NIPAagg2.Rd |only PANICr-0.0.0.5/PANICr/man/NIPAagg3.Rd |only PANICr-0.1.3/PANICr/DESCRIPTION | 37 - PANICr-0.1.3/PANICr/MD5 | 139 +++-- PANICr-0.1.3/PANICr/NAMESPACE | 27 + PANICr-0.1.3/PANICr/R/MCMCfacstuffzzz.R | 310 ++++++------ PANICr-0.1.3/PANICr/R/MCMCpanic10.R | 705 +++++++++++++++-------------- PANICr-0.1.3/PANICr/R/NIPA_agg_9.R |only PANICr-0.1.3/PANICr/R/NIPAagg5.R |only PANICr-0.1.3/PANICr/R/adf04.r | 119 ++-- PANICr-0.1.3/PANICr/R/adf10.r | 5 PANICr-0.1.3/PANICr/R/adfc2.R | 2 PANICr-0.1.3/PANICr/R/adfnc.R | 2 PANICr-0.1.3/PANICr/R/adfp.r | 18 PANICr-0.1.3/PANICr/R/cPANIC.r | 334 +++++++------ PANICr-0.1.3/PANICr/R/getnfac.r | 89 ++- PANICr-0.1.3/PANICr/R/glsd.r | 9 PANICr-0.1.3/PANICr/R/lagn.R | 9 PANICr-0.1.3/PANICr/R/lm1.R | 2 PANICr-0.1.3/PANICr/R/minindc.r | 6 PANICr-0.1.3/PANICr/R/mydiff.r | 8 PANICr-0.1.3/PANICr/R/myols.r | 5 PANICr-0.1.3/PANICr/R/nuisance.r | 60 +- PANICr-0.1.3/PANICr/R/nw.r | 104 ++-- PANICr-0.1.3/PANICr/R/panic10b.r | 416 ++++++++--------- PANICr-0.1.3/PANICr/R/panic_generics.R |only PANICr-0.1.3/PANICr/R/pc.R | 48 - PANICr-0.1.3/PANICr/R/pool10.r | 23 PANICr-0.1.3/PANICr/R/poolcoint.R | 11 PANICr-0.1.3/PANICr/R/s2ar.r | 6 PANICr-0.1.3/PANICr/R/sysdata.rda |binary PANICr-0.1.3/PANICr/README.md | 18 PANICr-0.1.3/PANICr/build/vignette.rds |binary PANICr-0.1.3/PANICr/data/NIPA_agg_5.rda |only PANICr-0.1.3/PANICr/data/NIPA_agg_9.rda |only PANICr-0.1.3/PANICr/data/adfc2.rda |only PANICr-0.1.3/PANICr/data/adfnc.rda |only PANICr-0.1.3/PANICr/data/coint0.rda |only PANICr-0.1.3/PANICr/data/datalist |only PANICr-0.1.3/PANICr/data/lm1.rda |only PANICr-0.1.3/PANICr/inst/doc/PANICr.R |only PANICr-0.1.3/PANICr/inst/doc/PANICr.Rmd | 184 +++++++ PANICr-0.1.3/PANICr/inst/doc/PANICr.html | 352 ++++++++++++++ PANICr-0.1.3/PANICr/inst/test_data |only PANICr-0.1.3/PANICr/man/MCMCpanic04.Rd | 51 +- PANICr-0.1.3/PANICr/man/MCMCpanic10.Rd | 44 + PANICr-0.1.3/PANICr/man/NIPA_agg_5.Rd |only PANICr-0.1.3/PANICr/man/NIPA_agg_9.Rd |only PANICr-0.1.3/PANICr/man/adf.Rd | 7 PANICr-0.1.3/PANICr/man/adf04.Rd | 7 PANICr-0.1.3/PANICr/man/adfc2.Rd | 3 PANICr-0.1.3/PANICr/man/adfnc.Rd | 3 PANICr-0.1.3/PANICr/man/adfp.Rd | 17 PANICr-0.1.3/PANICr/man/coint0.Rd | 3 PANICr-0.1.3/PANICr/man/getnfac.Rd | 40 - PANICr-0.1.3/PANICr/man/glsd.Rd | 11 PANICr-0.1.3/PANICr/man/lagn.Rd | 9 PANICr-0.1.3/PANICr/man/lm1.Rd | 3 PANICr-0.1.3/PANICr/man/minindc.Rd | 7 PANICr-0.1.3/PANICr/man/mydiff.Rd | 9 PANICr-0.1.3/PANICr/man/myols.Rd | 7 PANICr-0.1.3/PANICr/man/nuisance.Rd | 5 PANICr-0.1.3/PANICr/man/nw.Rd | 7 PANICr-0.1.3/PANICr/man/panic04.Rd | 56 +- PANICr-0.1.3/PANICr/man/panic10.Rd | 64 +- PANICr-0.1.3/PANICr/man/pc.Rd | 11 PANICr-0.1.3/PANICr/man/pool.Rd | 13 PANICr-0.1.3/PANICr/man/poolcoint.Rd | 13 PANICr-0.1.3/PANICr/man/s2ar.Rd | 9 PANICr-0.1.3/PANICr/man/trimr.Rd | 3 PANICr-0.1.3/PANICr/tests |only PANICr-0.1.3/PANICr/vignettes/NIPAagg1.rda |only PANICr-0.1.3/PANICr/vignettes/NIPAagg2.rda |only PANICr-0.1.3/PANICr/vignettes/NIPAagg3.rda |only PANICr-0.1.3/PANICr/vignettes/PANICr.Rmd | 184 +++++++ 82 files changed, 2283 insertions(+), 1351 deletions(-)
Title: Interface to Popular R Functions for Data Science Pipelines
Description:
Interface to popular R functions with formulas and data,
such as 'lm', so they can be included painlessly in data
science pipelines implemented by 'magrittr'
with the operator %>%.
Author: Roberto Bertolusso
Maintainer: Roberto Bertolusso <rbertolusso@rice.edu>
Diff between intubate versions 0.99.2 dated 2016-07-28 and 1.0.0 dated 2016-08-28
intubate-0.99.2/intubate/R/function_formula_data.R |only intubate-0.99.2/intubate/R/function_model_data.R |only intubate-0.99.2/intubate/R/function_object_data.R |only intubate-0.99.2/intubate/R/function_x_data.R |only intubate-0.99.2/intubate/R/non_standard_cases.R |only intubate-0.99.2/intubate/man/ntbt_aggregate.Rd |only intubate-0.99.2/intubate/man/ntbt_alias.Rd |only intubate-0.99.2/intubate/man/ntbt_ansari.test.Rd |only intubate-0.99.2/intubate/man/ntbt_aov.Rd |only intubate-0.99.2/intubate/man/ntbt_barchart.Rd |only intubate-0.99.2/intubate/man/ntbt_bartlett.test.Rd |only intubate-0.99.2/intubate/man/ntbt_boxplot.Rd |only intubate-0.99.2/intubate/man/ntbt_bwplot.Rd |only intubate-0.99.2/intubate/man/ntbt_cch.Rd |only intubate-0.99.2/intubate/man/ntbt_cdplot.Rd |only intubate-0.99.2/intubate/man/ntbt_cloud.Rd |only intubate-0.99.2/intubate/man/ntbt_contourplot.Rd |only intubate-0.99.2/intubate/man/ntbt_coplot.Rd |only intubate-0.99.2/intubate/man/ntbt_cor.test.Rd |only intubate-0.99.2/intubate/man/ntbt_corresp.Rd |only intubate-0.99.2/intubate/man/ntbt_coxph.Rd |only intubate-0.99.2/intubate/man/ntbt_cppls.Rd |only intubate-0.99.2/intubate/man/ntbt_densityplot.Rd |only intubate-0.99.2/intubate/man/ntbt_dotplot.Rd |only intubate-0.99.2/intubate/man/ntbt_finegray.Rd |only intubate-0.99.2/intubate/man/ntbt_fligner.test.Rd |only intubate-0.99.2/intubate/man/ntbt_friedman.test.Rd |only intubate-0.99.2/intubate/man/ntbt_ftable.Rd |only intubate-0.99.2/intubate/man/ntbt_function_formula_data.Rd |only intubate-0.99.2/intubate/man/ntbt_gam.Rd |only intubate-0.99.2/intubate/man/ntbt_getInitial.Rd |only intubate-0.99.2/intubate/man/ntbt_glm.Rd |only intubate-0.99.2/intubate/man/ntbt_glm.nb.Rd |only intubate-0.99.2/intubate/man/ntbt_gls.Rd |only intubate-0.99.2/intubate/man/ntbt_histogram.Rd |only intubate-0.99.2/intubate/man/ntbt_kruskal.test.Rd |only intubate-0.99.2/intubate/man/ntbt_lda.Rd |only intubate-0.99.2/intubate/man/ntbt_levelplot.Rd |only intubate-0.99.2/intubate/man/ntbt_lm.Rd |only intubate-0.99.2/intubate/man/ntbt_lm.gls.Rd |only intubate-0.99.2/intubate/man/ntbt_lm.ridge.Rd |only intubate-0.99.2/intubate/man/ntbt_lmList.Rd |only intubate-0.99.2/intubate/man/ntbt_lme.Rd |only intubate-0.99.2/intubate/man/ntbt_loess.Rd |only intubate-0.99.2/intubate/man/ntbt_loglm.Rd |only intubate-0.99.2/intubate/man/ntbt_logtrans.Rd |only intubate-0.99.2/intubate/man/ntbt_lqs.Rd |only intubate-0.99.2/intubate/man/ntbt_model.frame.Rd |only intubate-0.99.2/intubate/man/ntbt_model.matrix.Rd |only intubate-0.99.2/intubate/man/ntbt_mood.test.Rd |only intubate-0.99.2/intubate/man/ntbt_mosaicplot.Rd |only intubate-0.99.2/intubate/man/ntbt_multinom.Rd |only intubate-0.99.2/intubate/man/ntbt_mvr.Rd |only intubate-0.99.2/intubate/man/ntbt_nlme.Rd |only intubate-0.99.2/intubate/man/ntbt_nls.Rd |only intubate-0.99.2/intubate/man/ntbt_nlsList.Rd |only intubate-0.99.2/intubate/man/ntbt_nnet.Rd |only intubate-0.99.2/intubate/man/ntbt_oneway.Rd |only intubate-0.99.2/intubate/man/ntbt_oneway.test.Rd |only intubate-0.99.2/intubate/man/ntbt_pairs.Rd |only intubate-0.99.2/intubate/man/ntbt_parallelplot.Rd |only intubate-0.99.2/intubate/man/ntbt_pcr.Rd |only intubate-0.99.2/intubate/man/ntbt_plot.Rd |only intubate-0.99.2/intubate/man/ntbt_plsr.Rd |only intubate-0.99.2/intubate/man/ntbt_polr.Rd |only intubate-0.99.2/intubate/man/ntbt_ppr.Rd |only intubate-0.99.2/intubate/man/ntbt_prcomp.Rd |only intubate-0.99.2/intubate/man/ntbt_princomp.Rd |only intubate-0.99.2/intubate/man/ntbt_pyears.Rd |only intubate-0.99.2/intubate/man/ntbt_qda.Rd |only intubate-0.99.2/intubate/man/ntbt_qq.Rd |only intubate-0.99.2/intubate/man/ntbt_qqmath.Rd |only intubate-0.99.2/intubate/man/ntbt_quade.test.Rd |only intubate-0.99.2/intubate/man/ntbt_regsubsets.Rd |only intubate-0.99.2/intubate/man/ntbt_replications.Rd |only intubate-0.99.2/intubate/man/ntbt_rlm.Rd |only intubate-0.99.2/intubate/man/ntbt_rpart.Rd |only intubate-0.99.2/intubate/man/ntbt_spineplot.Rd |only intubate-0.99.2/intubate/man/ntbt_splom.Rd |only intubate-0.99.2/intubate/man/ntbt_stripchart.Rd |only intubate-0.99.2/intubate/man/ntbt_stripplot.Rd |only intubate-0.99.2/intubate/man/ntbt_sunflowerplot.Rd |only intubate-0.99.2/intubate/man/ntbt_survConcordance.Rd |only intubate-0.99.2/intubate/man/ntbt_survSplit.Rd |only intubate-0.99.2/intubate/man/ntbt_survexp.Rd |only intubate-0.99.2/intubate/man/ntbt_survfit.Rd |only intubate-0.99.2/intubate/man/ntbt_t.test.Rd |only intubate-0.99.2/intubate/man/ntbt_tmd.Rd |only intubate-0.99.2/intubate/man/ntbt_var.test.Rd |only intubate-0.99.2/intubate/man/ntbt_wilcox.test.Rd |only intubate-0.99.2/intubate/man/ntbt_wireframe.Rd |only intubate-0.99.2/intubate/man/ntbt_xtabs.Rd |only intubate-0.99.2/intubate/man/ntbt_xyplot.Rd |only intubate-1.0.0/intubate/ChangeLog | 38 + intubate-1.0.0/intubate/DESCRIPTION | 18 intubate-1.0.0/intubate/MD5 | 201 +++++----- intubate-1.0.0/intubate/NAMESPACE | 143 ++++++- intubate-1.0.0/intubate/R/interfaces.R |only intubate-1.0.0/intubate/R/intubate.R |only intubate-1.0.0/intubate/README.md |only intubate-1.0.0/intubate/build |only intubate-1.0.0/intubate/inst/COPYRIGHTS | 6 intubate-1.0.0/intubate/inst/doc |only intubate-1.0.0/intubate/man/AER.Rd |only intubate-1.0.0/intubate/man/CORElearn.Rd |only intubate-1.0.0/intubate/man/EnvStats.Rd |only intubate-1.0.0/intubate/man/Hmisc.Rd |only intubate-1.0.0/intubate/man/MASS.Rd |only intubate-1.0.0/intubate/man/MCMCglmm.Rd |only intubate-1.0.0/intubate/man/RRF.Rd |only intubate-1.0.0/intubate/man/RWeka.Rd |only intubate-1.0.0/intubate/man/Rchoice.Rd |only intubate-1.0.0/intubate/man/SwarmSVM.Rd |only intubate-1.0.0/intubate/man/adabag.Rd |only intubate-1.0.0/intubate/man/aod.Rd |only intubate-1.0.0/intubate/man/ape.Rd |only intubate-1.0.0/intubate/man/arm.Rd |only intubate-1.0.0/intubate/man/betareg.Rd |only intubate-1.0.0/intubate/man/brglm.Rd |only intubate-1.0.0/intubate/man/caper.Rd |only intubate-1.0.0/intubate/man/car.Rd |only intubate-1.0.0/intubate/man/caret.Rd |only intubate-1.0.0/intubate/man/coin.Rd |only intubate-1.0.0/intubate/man/drc.Rd |only intubate-1.0.0/intubate/man/e1071.Rd |only intubate-1.0.0/intubate/man/earth.Rd |only intubate-1.0.0/intubate/man/experimental.Rd |only intubate-1.0.0/intubate/man/fGarch.Rd |only intubate-1.0.0/intubate/man/flexmix.Rd |only intubate-1.0.0/intubate/man/forecast.Rd |only intubate-1.0.0/intubate/man/frontier.Rd |only intubate-1.0.0/intubate/man/gam.Rd |only intubate-1.0.0/intubate/man/gbm.Rd |only intubate-1.0.0/intubate/man/gee.Rd |only intubate-1.0.0/intubate/man/glmnet.Rd |only intubate-1.0.0/intubate/man/glmx.Rd |only intubate-1.0.0/intubate/man/gmnl.Rd |only intubate-1.0.0/intubate/man/gplots.Rd |only intubate-1.0.0/intubate/man/graphics.Rd |only intubate-1.0.0/intubate/man/gss.Rd |only intubate-1.0.0/intubate/man/hdm.Rd |only intubate-1.0.0/intubate/man/iRegression.Rd |only intubate-1.0.0/intubate/man/intubate-package.Rd | 254 ++++++++++--- intubate-1.0.0/intubate/man/intubate.Rd |only intubate-1.0.0/intubate/man/ipred.Rd |only intubate-1.0.0/intubate/man/ivfixed.Rd |only intubate-1.0.0/intubate/man/kernlab.Rd |only intubate-1.0.0/intubate/man/kknn.Rd |only intubate-1.0.0/intubate/man/klaR.Rd |only intubate-1.0.0/intubate/man/lars.Rd |only intubate-1.0.0/intubate/man/lattice.Rd |only intubate-1.0.0/intubate/man/latticeExtra.Rd |only intubate-1.0.0/intubate/man/leaps.Rd |only intubate-1.0.0/intubate/man/lfe.Rd |only intubate-1.0.0/intubate/man/lme4.Rd |only intubate-1.0.0/intubate/man/lmtest.Rd |only intubate-1.0.0/intubate/man/mda.Rd |only intubate-1.0.0/intubate/man/metafor.Rd |only intubate-1.0.0/intubate/man/mgcv.Rd |only intubate-1.0.0/intubate/man/mhurdle.Rd |only intubate-1.0.0/intubate/man/minpack.lm.Rd |only intubate-1.0.0/intubate/man/mlogit.Rd |only intubate-1.0.0/intubate/man/mnlogit.Rd |only intubate-1.0.0/intubate/man/modeltools.Rd |only intubate-1.0.0/intubate/man/nlme.Rd |only intubate-1.0.0/intubate/man/nlreg.Rd |only intubate-1.0.0/intubate/man/nnet.Rd |only intubate-1.0.0/intubate/man/ordinal.Rd |only intubate-1.0.0/intubate/man/pROC.Rd |only intubate-1.0.0/intubate/man/party.Rd |only intubate-1.0.0/intubate/man/partykit.Rd |only intubate-1.0.0/intubate/man/plotrix.Rd |only intubate-1.0.0/intubate/man/pls.Rd |only intubate-1.0.0/intubate/man/pscl.Rd |only intubate-1.0.0/intubate/man/psychomix.Rd |only intubate-1.0.0/intubate/man/psychotools.Rd |only intubate-1.0.0/intubate/man/psychotree.Rd |only intubate-1.0.0/intubate/man/quantreg.Rd |only intubate-1.0.0/intubate/man/randomForest.Rd |only intubate-1.0.0/intubate/man/rminer.Rd |only intubate-1.0.0/intubate/man/rms.Rd |only intubate-1.0.0/intubate/man/robustbase.Rd |only intubate-1.0.0/intubate/man/rpart.Rd |only intubate-1.0.0/intubate/man/sampleSelection.Rd |only intubate-1.0.0/intubate/man/sem.Rd |only intubate-1.0.0/intubate/man/spBayes.Rd |only intubate-1.0.0/intubate/man/stats.Rd |only intubate-1.0.0/intubate/man/strucchange.Rd |only intubate-1.0.0/intubate/man/survey.Rd |only intubate-1.0.0/intubate/man/survival.Rd |only intubate-1.0.0/intubate/man/systemfit.Rd |only intubate-1.0.0/intubate/man/tree.Rd |only intubate-1.0.0/intubate/man/vcd.Rd |only intubate-1.0.0/intubate/man/vegan.Rd |only intubate-1.0.0/intubate/vignettes |only 195 files changed, 488 insertions(+), 172 deletions(-)
Title: Case-Control Analysis of Multi-Allelic Loci
Description: Data sets and functions for chi-squared Hardy-Weinberg and case-control
association tests of highly polymorphic genetic data [e.g., human leukocyte antigen
(HLA) data]. Performs association tests at multiple levels of polymorphism
(haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach
JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a
common class to account for sparse cells in tables as described by Hollenbach JA,
Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.
Author: Derek Pappas <dpappas@chori.org>, Steve Mack <sjmack@chori.org>, Jill
Hollenbach <Jill.Hollenbach@ucsf.edu>
Maintainer: Steve Mack <sjmack@chori.org>
Diff between BIGDAWG versions 1.4.0 dated 2016-05-14 and 1.5.4 dated 2016-08-28
BIGDAWG-1.4.0/BIGDAWG/data |only BIGDAWG-1.5.4/BIGDAWG/DESCRIPTION | 12 BIGDAWG-1.5.4/BIGDAWG/MD5 | 61 + BIGDAWG-1.5.4/BIGDAWG/NAMESPACE | 2 BIGDAWG-1.5.4/BIGDAWG/NEWS | 210 +++--- BIGDAWG-1.5.4/BIGDAWG/R/A_ExonPtnAlign_functions.R | 22 BIGDAWG-1.5.4/BIGDAWG/R/A_wrapper.R |only BIGDAWG-1.5.4/BIGDAWG/R/BIGDAWG.R | 292 ++------ BIGDAWG-1.5.4/BIGDAWG/R/CheckRelease.R | 100 +- BIGDAWG-1.5.4/BIGDAWG/R/HWE.R | 4 BIGDAWG-1.5.4/BIGDAWG/R/HWE_wrapper.R |only BIGDAWG-1.5.4/BIGDAWG/R/H_wrapper.R |only BIGDAWG-1.5.4/BIGDAWG/R/L_wrapper.R |only BIGDAWG-1.5.4/BIGDAWG/R/check_functions.R | 396 ++++++----- BIGDAWG-1.5.4/BIGDAWG/R/data.R | 26 BIGDAWG-1.5.4/BIGDAWG/R/general_functions.R | 703 ++++++++++----------- BIGDAWG-1.5.4/BIGDAWG/R/sysdata.rda |binary BIGDAWG-1.5.4/BIGDAWG/R/update_wrapper.R | 192 ++--- BIGDAWG-1.5.4/BIGDAWG/build/vignette.rds |binary BIGDAWG-1.5.4/BIGDAWG/inst/doc/BIGDAWG.Rmd | 444 +++++++------ BIGDAWG-1.5.4/BIGDAWG/inst/doc/BIGDAWG.html | 526 ++++++++------- BIGDAWG-1.5.4/BIGDAWG/man/A.wrapper.Rd |only BIGDAWG-1.5.4/BIGDAWG/man/AlignObj.Create.Rd | 44 - BIGDAWG-1.5.4/BIGDAWG/man/AlignObj.Update.Rd | 44 - BIGDAWG-1.5.4/BIGDAWG/man/BIGDAWG.Rd | 14 BIGDAWG-1.5.4/BIGDAWG/man/ExonPtnAlign.Create.Rd | 40 - BIGDAWG-1.5.4/BIGDAWG/man/GetFiles.Rd | 36 - BIGDAWG-1.5.4/BIGDAWG/man/H.wrapper.Rd |only BIGDAWG-1.5.4/BIGDAWG/man/HWE.Rd |only BIGDAWG-1.5.4/BIGDAWG/man/HWE.wrapper.Rd | 44 - BIGDAWG-1.5.4/BIGDAWG/man/L.wrapper.Rd |only BIGDAWG-1.5.4/BIGDAWG/man/PgrpExtract.Rd | 40 - BIGDAWG-1.5.4/BIGDAWG/man/PgrpFormat.Rd | 40 - BIGDAWG-1.5.4/BIGDAWG/man/PreCheck.Rd | 52 - BIGDAWG-1.5.4/BIGDAWG/man/UpdateRelease.Rd | 42 - BIGDAWG-1.5.4/BIGDAWG/vignettes/BIGDAWG.Rmd | 444 +++++++------ 36 files changed, 1946 insertions(+), 1884 deletions(-)