Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive pre-built widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
JJ Allaire [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/shared/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/shared/jqueryui/1.10.4/AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Stefan Petre [ctb, cph] (Bootstrap-datepicker library),
Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),
Dave Gandy [ctb, cph] (Font-Awesome font),
Brian Reavis [ctb, cph] (selectize.js library),
Kristopher Michael Kowal [ctb, cph] (es5-shim library),
es5-shim contributors [ctb, cph] (es5-shim library),
Denis Ineshin [ctb, cph] (ion.rangeSlider library),
Sami Samhuri [ctb, cph] (Javascript strftime library),
SpryMedia Limited [ctb, cph] (DataTables library),
John Fraser [ctb, cph] (showdown.js library),
John Gruber [ctb, cph] (showdown.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shiny versions 0.13.2 dated 2016-03-28 and 0.14 dated 2016-09-09
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Title: Accesses Weather Data from the Iowa Environment Mesonet
Description: Allows to get weather data from Automated Surface Observing System (ASOS) stations (airports) in the
whole world thanks to the Iowa Environment Mesonet website.
Author: Maëlle Salmon [aut, cre],
Brooke Anderson [ctb] (Brooke Anderson reviewed the package for
rOpenSci, see https://github.com/ropensci/onboarding/issues/39.)
Maintainer: Maëlle Salmon <maelle.salmon@yahoo.se>
Diff between riem versions 0.1.0 dated 2016-05-28 and 0.1.1 dated 2016-09-09
DESCRIPTION | 14 - MD5 | 31 +-- NAMESPACE | 2 NEWS.md |only R/measures.R | 194 +++++++++++++----------- R/networks.R | 38 ++-- R/stations.R | 70 ++++---- build/vignette.rds |binary inst/doc/riem_package.R | 20 +- inst/doc/riem_package.Rmd | 22 +- inst/doc/riem_package.html | 330 ++++++----------------------------------- man/riem_measures.Rd | 114 +++++++------- man/riem_networks.Rd | 40 ++-- man/riem_stations.Rd | 52 +++--- tests/testthat/test-measures.R | 4 tests/testthat/test-networks.R | 4 vignettes/riem_package.Rmd | 22 +- 17 files changed, 390 insertions(+), 567 deletions(-)
Title: R Database Interface
Description: A database interface definition for communication
between R and relational database management systems. All
classes in this package are virtual and need to be extended by
the various R/DBMS implementations.
Author: R Special Interest Group on Databases (R-SIG-DB) [aut],
Hadley Wickham [aut],
Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between DBI versions 0.5 dated 2016-08-11 and 0.5-1 dated 2016-09-09
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NEWS.md | 7 ++++++- R/DBConnection.R | 4 ++-- R/DBResult.R | 2 +- inst/doc/DBI-proposal.html | 2 +- inst/doc/backend.html | 4 ++-- man/DBIspec.Rd | 31 +++++++++++++++++++++++++++++++ man/dbDataType.Rd | 10 +++++----- man/dbFetch.Rd | 2 +- man/dbGetException.Rd | 4 ++-- man/dbGetInfo.Rd | 10 +++++----- man/dbIsValid.Rd | 10 +++++----- 13 files changed, 78 insertions(+), 42 deletions(-)
Title: Approximate String Matching and String Distance Functions
Description: Implements an approximate string matching version of R's native
'match' function. Can calculate various string distances based on edits
(Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), qgrams (q-
gram, cosine, jaccard distance) or heuristic metrics (Jaro, Jaro-Winkler). An
implementation of soundex is provided as well. Distances can be computed between
character vectors while taking proper care of encoding or between integer
vectors representing generic sequences.
Author: Mark van der Loo [aut, cre],
Jan van der Laan [ctb],
R Core Team [ctb],
Nick Logan [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between stringdist versions 0.9.4.1 dated 2016-01-02 and 0.9.4.2 dated 2016-09-09
DESCRIPTION | 12 ++-- MD5 | 26 +++++----- NEWS | 93 ++++++++++++++++++++++++++------------ R/doc_encoding.R | 2 R/doc_parallel.R | 2 R/stringdist.R | 14 +++-- inst/CITATION | 2 man/stringdist-encoding.Rd | 2 man/stringdist-parallelization.Rd | 2 src/Rstringdist.c | 14 +++-- src/dist.h | 2 src/qgram.c | 35 ++++++++++---- src/stringdist.c | 7 +- tests/testthat/testStringdist.R | 6 ++ 14 files changed, 142 insertions(+), 77 deletions(-)
Title: Software Tools for the Statistical Analysis of Network Data
Description: An integrated set of tools for the representation, visualization, analysis, and simulation of network data. For an introduction, type help(package='statnet').
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut],
Skye Bender-deMoll [aut],
Martina Morris [aut, cre]
Maintainer: Martina Morris <morrism@u.washington.edu>
Diff between statnet versions 2016.4 dated 2016-04-04 and 2016.9 dated 2016-09-09
DESCRIPTION | 16 ++++++++-------- MD5 | 2 +- 2 files changed, 9 insertions(+), 9 deletions(-)
Title: UCA Rcmdr Plug-in
Description: Some extension to Rcmdr (R Commander) made by R-UCA project and used in teaching statistics at University of Cadiz (UCA).
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.UCA versions 2.0-5 dated 2016-01-12 and 3.0-1 dated 2016-09-09
ChangeLog | 3 + DESCRIPTION | 12 +++---- MD5 | 22 ++++++------- NAMESPACE | 2 + R/RcmdrPlugin.UCA.R | 45 ++++++++++++++++++++++++---- inst/etc/menus.txt | 13 +++++--- inst/po/es/LC_MESSAGES/R-RcmdrPlugin.UCA.mo |binary man/RcmdrPlugin.UCA-internal.Rd | 2 + man/RcmdrPlugin.UCA-package.Rd | 4 +- man/RcmdrPlugin.UCA.es-package.Rd | 4 +- po/R-RcmdrPlugin.UCA-es.po | 26 +++++++++++----- po/R-RcmdrPlugin.UCA.pot | 22 ++++++++++--- 12 files changed, 112 insertions(+), 43 deletions(-)
More information about RcmdrPlugin.UCA at CRAN
Permanent link
Title: Function for Generating Random Names and a Dataset
Description: Function for generating random gender and ethnicity correct first and/or last names. Names are chosen proportionally based upon their probability of appearing in a large scale data base of real names.
Author: Damian W. Betebenner <dbetebenner@nciea.org>
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between randomNames versions 0.1-0 dated 2015-07-24 and 0.2-0 dated 2016-09-09
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/randomNames.R | 34 +++++++++++++++++++--------------- inst/CITATION | 14 +++++++------- inst/NEWS | 5 +++++ man/randomNames-package.Rd | 6 +++--- man/randomNames.Rd | 39 +++++++++++++++++++++------------------ 7 files changed, 67 insertions(+), 55 deletions(-)
Title: Utilities for the Simulation and Analysis of Random Fields
Description: Various utilities are provided that might be used in spatial statistics and elsewhere. It delivers a method for solving linear equations that checks the sparsity of the matrix before any algorithm is used. Furthermore, it includes the Struve functions.
Author: Martin Schlather [aut, cre], Reinhard Furrer [ctb], Martin Kroll [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFieldsUtils versions 0.2.1.1 dated 2016-06-29 and 0.3.2 dated 2016-09-09
RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/cleanup |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/configure |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/configure.ac |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/configure.win |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/inst/include/Error_utils.h |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/inst/include/Struve.h |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/inst/include/own.h |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/src/Error_utils.h |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/src/Makevars.in |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/src/Makevars.win |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/src/R_init.cc |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/src/R_init.h |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/src/Struve.h |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/src/sqrt.cc |only RandomFieldsUtils-0.2.1.1/RandomFieldsUtils/src/struve.cc |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/DESCRIPTION | 6 RandomFieldsUtils-0.3.2/RandomFieldsUtils/MD5 | 93 +- RandomFieldsUtils-0.3.2/RandomFieldsUtils/NAMESPACE | 5 RandomFieldsUtils-0.3.2/RandomFieldsUtils/R/RFutils.R | 110 ++ RandomFieldsUtils-0.3.2/RandomFieldsUtils/R/maths.R |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/R/zzz.R | 14 RandomFieldsUtils-0.3.2/RandomFieldsUtils/inst/CITATION | 2 RandomFieldsUtils-0.3.2/RandomFieldsUtils/inst/include/Basic_utils.h | 11 RandomFieldsUtils-0.3.2/RandomFieldsUtils/inst/include/General_utils.h | 36 RandomFieldsUtils-0.3.2/RandomFieldsUtils/inst/include/Options_utils.h | 27 RandomFieldsUtils-0.3.2/RandomFieldsUtils/inst/include/Solve.h | 51 - RandomFieldsUtils-0.3.2/RandomFieldsUtils/inst/include/errors_messages.h |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/inst/include/init_RandomFieldsUtils.h |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/inst/include/kleinkram.h | 25 RandomFieldsUtils-0.3.2/RandomFieldsUtils/inst/include/win_linux_aux.h |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/Print.Rd | 4 RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/RFoptions.Rd | 27 RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/Struve.Rd | 4 RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/cholPosDef.Rd | 2 RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/fileexists.Rd |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/gauss.Rd |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/hostname.Rd |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/matern.Rd |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/nonstwm.Rd |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/orderx.Rd |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/sleep.Rd |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/solvePosDef.Rd | 12 RandomFieldsUtils-0.3.2/RandomFieldsUtils/man/sortx.Rd |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/Basic_utils.h | 13 RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/General_utils.h | 36 RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/Makevars |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/Options_utils.h | 27 RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/RFoptions.cc | 22 RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/RandomFieldsUtils.h | 26 RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/Solve.h | 51 - RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/bckslvmodified.f | 2 RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/cholmodified.f | 115 +- RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/errors_messages.h |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/init_RandomFieldsUtils.cc |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/init_RandomFieldsUtils.h |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/kleinkram.cc | 123 +-- RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/kleinkram.h | 25 RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/maths.cc |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/options.cc | 18 RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/own.cc |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/solve.cc | 398 +++++++--- RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/sort.cc |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/spamown.f | 10 RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/utils.cc |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/win_linux_aux.cc |only RandomFieldsUtils-0.3.2/RandomFieldsUtils/src/win_linux_aux.h |only 66 files changed, 810 insertions(+), 485 deletions(-)
More information about RandomFieldsUtils at CRAN
Permanent link
Title: Helpers for Parameters in Black-Box Optimization, Tuning and
Machine Learning
Description: Functions for parameter descriptions and operations in black-box
optimization, tuning and machine learning. Parameters can be described
(type, constraints, defaults, etc.), combined to parameter sets and can in
general be programmed on. A useful OptPath object (archive) to log function
evaluations is also provided.
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Jakob Bossek [aut],
Daniel Horn [aut],
Karin Schork [ctb],
Jakob Richter [aut],
Pascal Kerschke [aut]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Diff between ParamHelpers versions 1.8 dated 2016-07-19 and 1.9 dated 2016-09-09
DESCRIPTION | 10 LICENSE | 1 MD5 | 84 ++--- NAMESPACE | 19 + NEWS | 9 R/OptPath_plotYTraces.R | 10 R/OptPath_setter.R | 4 R/ParamSet.R | 32 +- R/aParam.R | 43 ++ R/checkParamSet.R |only R/convertDiscrete.R | 2 R/evaluateParamExpressions.R |only R/getBounds.R | 147 +++++++-- R/getDefaults.R | 114 ++++++- R/getParamIds.R | 12 R/getParamLengths.R | 45 ++ R/getRequiredParamNames.R | 2 R/hasExpression.R |only R/isFeasible.R | 42 +- R/makeLearnerParamFuns.R | 119 +++++-- R/makeParamFuns.R | 392 ++++++++++++++++++++----- R/paramValueToString.R | 15 R/updateParVals.R | 18 - R/utils.R | 2 man/LearnerParam.Rd | 30 + man/Param.Rd | 34 +- man/addOptPathEl.Rd | 4 man/checkParamSet.Rd |only man/evaluateParamExpressions.Rd |only man/getDefaults.Rd | 32 +- man/getLower.Rd | 37 +- man/getParamLengths.Rd | 18 - man/hasExpression.Rd |only man/isFeasible.Rd | 1 man/makeParamSet.Rd | 18 + man/renderYTraces.Rd | 4 man/updateParVals.Rd | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test_LearnerParam.R | 16 - tests/testthat/test_Param.R | 17 - tests/testthat/test_convertDiscrete.R | 10 tests/testthat/test_evaluateParamExpressions.R |only tests/testthat/test_getDefaults.R | 40 ++ tests/testthat/test_hasExpression.R |only tests/testthat/test_isFeasible.R | 72 ++++ tests/testthat/test_paramValueToString.R | 2 tests/testthat/test_updateParVals.R | 27 + 47 files changed, 1200 insertions(+), 285 deletions(-)
Title: Access to Open Street Map Raster Images
Description: Accesses high resolution raster maps using the OpenStreetMap
protocol. Dozens of road, satellite, and topographic map servers are directly
supported, including Apple, Mapnik, Bing, and stamen. Additionally raster maps
may be constructed using custom tile servers. Maps can be
plotted using either base graphics, or ggplot2. This package is not affiliated
with the OpenStreetMap.org mapping project.
Author: Ian Fellows, using the JMapViewer library by Jan Peter Stotz
Maintainer: Ian Fellows <ian@fellstat.com>
Diff between OpenStreetMap versions 0.3.2 dated 2015-10-09 and 0.3.3 dated 2016-09-09
OpenStreetMap-0.3.2/OpenStreetMap/java/org/openstreetmap/gui/jmapviewer/tilesources/MapQuestAerialTileSource.java |only OpenStreetMap-0.3.2/OpenStreetMap/java/org/openstreetmap/gui/jmapviewer/tilesources/MapQuestTileSource.java |only OpenStreetMap-0.3.2/OpenStreetMap/man/setCloudMadeKey.Rd |only OpenStreetMap-0.3.3/OpenStreetMap/DESCRIPTION | 22 +- OpenStreetMap-0.3.3/OpenStreetMap/MD5 | 57 +++--- OpenStreetMap-0.3.3/OpenStreetMap/NAMESPACE | 3 OpenStreetMap-0.3.3/OpenStreetMap/R/osm.R | 88 ++++++---- OpenStreetMap-0.3.3/OpenStreetMap/R/zzz.R | 23 ++ OpenStreetMap-0.3.3/OpenStreetMap/inst/java/JMapViewer.jar |binary OpenStreetMap-0.3.3/OpenStreetMap/inst/java/RTileController.jar |binary OpenStreetMap-0.3.3/OpenStreetMap/java/RTileController.java | 22 -- OpenStreetMap-0.3.3/OpenStreetMap/java/org/openstreetmap/gui/jmapviewer/Demo.java | 16 - OpenStreetMap-0.3.3/OpenStreetMap/java/org/openstreetmap/gui/jmapviewer/MemoryTileCache.java | 2 OpenStreetMap-0.3.3/OpenStreetMap/java/org/openstreetmap/gui/jmapviewer/tilesources/OsmTileSource.java | 54 +++++- OpenStreetMap-0.3.3/OpenStreetMap/man/LA_places.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/autoplot.OpenStreetMap.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/autoplot.osmtile.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/getMapInfo.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/launchMapHelper.Rd | 4 OpenStreetMap-0.3.3/OpenStreetMap/man/longlat.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/openmap.Rd | 53 ++++-- OpenStreetMap-0.3.3/OpenStreetMap/man/openproj.Rd | 14 - OpenStreetMap-0.3.3/OpenStreetMap/man/osm.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/osmtile.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/plot.OpenStreetMap.Rd | 50 ++--- OpenStreetMap-0.3.3/OpenStreetMap/man/plot.osmtile.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/print.OpenStreetMap.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/projectMercator.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/raster-OpenStreetMap-method.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/raster-osmtile-method.Rd | 2 OpenStreetMap-0.3.3/OpenStreetMap/man/states.Rd | 2 31 files changed, 264 insertions(+), 170 deletions(-)
Title: Individual Tree Growth Modeling
Description: Individual tree model is an instrument to support the decision with
regard to forest management. This package provides functions that let you work
with data for this model. Also other support functions and extension related to
this model are available.
Author: Clayton Vieira Fraga Filho, Miqueias Fernandes
Maintainer: Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>
Diff between ITGM versions 0.1 dated 2016-08-09 and 0.2 dated 2016-09-09
DESCRIPTION | 6 +++--- MD5 | 9 +++++++-- NAMESPACE | 2 ++ R/getModelosLiteraturaExclusivos.R |only R/getModelosLiteraturaGenericos.R |only README.md |only man/getModelosLiteraturaExclusivos.Rd |only man/getModelosLiteraturaGenericos.Rd |only 8 files changed, 12 insertions(+), 5 deletions(-)
Title: Geometric Morphometric Analyses of 2D/3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams, Michael Collyer, Antigoni Kaliontzopoulou, Emma Sherratt
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 3.0.2 dated 2016-07-19 and 3.0.3 dated 2016-09-09
DESCRIPTION | 9 - MD5 | 56 ++++--- NAMESPACE | 5 NEWS | 21 ++ R/advanced.procD.lm.r | 1 R/bilat.symmetry.r | 166 +++++++++++++---------- R/compare.pls.r |only R/coords.subset.R |only R/define.sliders.r | 40 ++++- R/geomorph.support.code.r | 281 +++++++++++++++++++++++++++++++++------- R/geomorph.utils.r | 62 ++++++-- R/modularity.test.r | 4 R/morphol.disparity.r | 6 R/procD.allometry.r | 1 R/procD.lm.r | 1 R/procD.pgls.r | 1 R/readland.tps.r | 1 R/shape.predictor.r |only R/trajectory.analysis.r | 9 - R/warpRefMesh.r | 3 man/bilat.symmetry.Rd | 106 ++++++++------- man/compare.pls.Rd |only man/coords.subset.Rd |only man/define.sliders.Rd | 17 ++ man/geomorph-package.Rd | 2 man/modularity.test.Rd | 4 man/mshape.Rd | 2 man/plot.trajectory.analysis.Rd | 2 man/print.compare.pls.Rd |only man/shape.predictor.Rd |only man/summary.compare.pls.Rd |only man/trajectory.analysis.Rd | 5 man/warpRefMesh.Rd | 1 33 files changed, 567 insertions(+), 239 deletions(-)
Title: Fitting Univariate Censored Linear Regression Model with
Autoregressive Errors
Description: It fits an univariate left or right censored linear regression model
with autoregressive errors under the normal distribution. It provides estimates
and standard errors of the parameters, prediction of future observations and
it supports missing values on the dependent variable.
It also performs influence diagnostic through local influence for three possible
perturbation schemes.
Author: Fernanda L. Schumacher, Victor H. Lachos and Christian E. Galarza
Maintainer: Fernanda L. Schumacher <fernandalschumacher@gmail.com>
Diff between ARCensReg versions 1.0 dated 2016-05-16 and 2.0 dated 2016-09-09
DESCRIPTION | 13 + MD5 | 20 ++ NAMESPACE | 9 - R/auxfunctions.R | 343 ++++++++++++++++++++++++++++++++++--------------- R/finalfunction.R | 27 ++- R/finalfunctionDiag.R |only R/finalfunctionGerar.R |only R/princfunction.R | 234 +++++++++++++++++++++++++-------- R/princfunctionDiag.R |only R/princfunctionGerar.R |only data/phosphorus.txt.gz |only man/InfDiag.Rd |only man/arcensreg.Rd | 58 +++----- man/phosphorus.Rd |only man/rARCens.Rd |only 15 files changed, 494 insertions(+), 210 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to help safely and efficiently organize Monte Carlo simulations in R.
The package controls the structure and back-end of Monte Carlo simulations
by utilizing a general generate-analyse-summarise strategy. The functions provided control
common simulation issues such as re-simulating non-convergent results, support parallel
back-end and MPI distributed computations, save and restore temporary files,
aggregate results across independent nodes, and provide native support for debugging.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 1.1 dated 2016-08-10 and 1.2 dated 2016-09-09
DESCRIPTION | 7 ++--- MD5 | 17 +++++++------- R/SimDesign.R | 4 +++ R/SimFunctions.R | 18 +++++++++----- R/runSimulation.R | 12 +++++++++ R/zzz.R |only man/SimDesign.Rd | 5 ++++ man/SimFunctions.Rd | 18 +++++++++----- man/runSimulation.Rd | 5 ++++ tests/tests/test-SimDesign.R | 52 ++++++++++++++++++++++++++++++++++++++----- 10 files changed, 107 insertions(+), 31 deletions(-)
Title: Interaction Between R and REDCap
Description: Encapsulates functions to streamline calls from R to the REDCap
API. REDCap (Research Electronic Data CAPture) is a web application for
building and managing online surveys and databases developed at Vanderbilt
University. The Application Programming Interface (API) offers an avenue
to access and modify data programmatically, improving the capacity for
literate and reproducible programming.
Author: Will Beasley [aut, cre],
David Bard [ctb],
Thomas Wilson [ctb],
John J Aponte [ctb],
Rollie Parrish [ctb],
Benjamin Nutter [ctb],
Andrew Peters [ctb],
Hao Zhu [ctb]
Maintainer: Will Beasley <wibeasley@hotmail.com>
Diff between REDCapR versions 0.9.3 dated 2015-08-26 and 0.9.7 dated 2016-09-09
REDCapR-0.9.3/REDCapR/R/create_batch_glossary.R |only REDCapR-0.9.3/REDCapR/R/metadata_utilities.R |only REDCapR-0.9.3/REDCapR/R/project_simple.R |only REDCapR-0.9.3/REDCapR/R/redcap_column_sanitize.R |only REDCapR-0.9.3/REDCapR/R/redcap_download_file_oneshot.R |only REDCapR-0.9.3/REDCapR/R/redcap_metadata_read.R |only REDCapR-0.9.3/REDCapR/R/redcap_project.R |only REDCapR-0.9.3/REDCapR/R/redcap_read.R |only REDCapR-0.9.3/REDCapR/R/redcap_read_oneshot.R |only REDCapR-0.9.3/REDCapR/R/redcap_upload_file_oneshot.R |only REDCapR-0.9.3/REDCapR/R/redcap_write.R |only REDCapR-0.9.3/REDCapR/R/redcap_write_oneshot.R |only REDCapR-0.9.3/REDCapR/R/retrieve_token.R |only REDCapR-0.9.3/REDCapR/R/validate_for_write.R |only REDCapR-0.9.3/REDCapR/inst/ssl_certs |only REDCapR-0.9.3/REDCapR/inst/test_data |only REDCapR-0.9.3/REDCapR/tests/manual/test-stress_test_serial.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-create_batch_glossary.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-file_oneshot.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-metadata_read.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-metadata_utilities.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-read_batch_longitudinal.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-read_batch_simple.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-read_errors.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-read_oneshot.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-read_russian.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-retrieve_token.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-validate_for_write.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-write_batch.R |only REDCapR-0.9.3/REDCapR/tests/testthat/test-write_oneshot.R |only REDCapR-0.9.7/REDCapR/DESCRIPTION | 23 REDCapR-0.9.7/REDCapR/MD5 | 175 +- REDCapR-0.9.7/REDCapR/NAMESPACE | 4 REDCapR-0.9.7/REDCapR/NEWS | 32 REDCapR-0.9.7/REDCapR/R/REDCapR-package.R | 25 REDCapR-0.9.7/REDCapR/R/create-batch-glossary.R |only REDCapR-0.9.7/REDCapR/R/metadata-utilities.R |only REDCapR-0.9.7/REDCapR/R/project-simple.R |only REDCapR-0.9.7/REDCapR/R/redcap-column-sanitize.R |only REDCapR-0.9.7/REDCapR/R/redcap-download-file-oneshot.R |only REDCapR-0.9.7/REDCapR/R/redcap-metadata-read.R |only REDCapR-0.9.7/REDCapR/R/redcap-project.R |only REDCapR-0.9.7/REDCapR/R/redcap-read-oneshot.R |only REDCapR-0.9.7/REDCapR/R/redcap-read.R |only REDCapR-0.9.7/REDCapR/R/redcap-upload-file-oneshot.R |only REDCapR-0.9.7/REDCapR/R/redcap-write-oneshot.R |only REDCapR-0.9.7/REDCapR/R/redcap-write.R |only REDCapR-0.9.7/REDCapR/R/retrieve-credential.R |only REDCapR-0.9.7/REDCapR/R/retrieve-token.R |only REDCapR-0.9.7/REDCapR/R/utilities.R | 1 REDCapR-0.9.7/REDCapR/R/validate-for-write.R |only REDCapR-0.9.7/REDCapR/README.md | 67 REDCapR-0.9.7/REDCapR/build/vignette.rds |binary REDCapR-0.9.7/REDCapR/inst/doc/BasicREDCapROperations.R | 2 REDCapR-0.9.7/REDCapR/inst/doc/BasicREDCapROperations.Rmd | 13 REDCapR-0.9.7/REDCapR/inst/doc/BasicREDCapROperations.html | 253 +-- REDCapR-0.9.7/REDCapR/inst/doc/SecurityDatabase.Rmd | 338 +++- REDCapR-0.9.7/REDCapR/inst/doc/SecurityDatabase.html | 391 +++-- REDCapR-0.9.7/REDCapR/inst/doc/TroubleshootingApiCalls.Rmd | 201 +- REDCapR-0.9.7/REDCapR/inst/doc/TroubleshootingApiCalls.html | 695 +++------- REDCapR-0.9.7/REDCapR/inst/misc/bad.credentials |only REDCapR-0.9.7/REDCapR/inst/misc/conflicting-rows.credentials |only REDCapR-0.9.7/REDCapR/inst/misc/example.credentials |only REDCapR-0.9.7/REDCapR/inst/misc/out-of-order.credentials |only REDCapR-0.9.7/REDCapR/inst/misc/zero-rows.credentials |only REDCapR-0.9.7/REDCapR/inst/test-data |only REDCapR-0.9.7/REDCapR/man/REDCapR-package.Rd | 33 REDCapR-0.9.7/REDCapR/man/create_batch_glossary.Rd | 10 REDCapR-0.9.7/REDCapR/man/metadata_utilities.Rd | 18 REDCapR-0.9.7/REDCapR/man/redcap_column_sanitize.Rd | 8 REDCapR-0.9.7/REDCapR/man/redcap_download_file_oneshot.Rd | 45 REDCapR-0.9.7/REDCapR/man/redcap_metadata_read.Rd | 14 REDCapR-0.9.7/REDCapR/man/redcap_project.Rd | 30 REDCapR-0.9.7/REDCapR/man/redcap_read.Rd | 36 REDCapR-0.9.7/REDCapR/man/redcap_read_oneshot.Rd | 64 REDCapR-0.9.7/REDCapR/man/redcap_upload_file_oneshot.Rd | 53 REDCapR-0.9.7/REDCapR/man/redcap_write.Rd | 47 REDCapR-0.9.7/REDCapR/man/redcap_write_oneshot.Rd | 38 REDCapR-0.9.7/REDCapR/man/replace_nas_with_explicit.Rd | 4 REDCapR-0.9.7/REDCapR/man/retrieve_credential.Rd |only REDCapR-0.9.7/REDCapR/man/retrieve_token.Rd | 61 REDCapR-0.9.7/REDCapR/man/validate_for_write.Rd | 14 REDCapR-0.9.7/REDCapR/tests/manual/test-could-not-connect-rate.R | 2 REDCapR-0.9.7/REDCapR/tests/manual/test-stress-test-serial.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-column-sanitize.R | 3 REDCapR-0.9.7/REDCapR/tests/testthat/test-create-batch-glossary.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-file-oneshot.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-metadata-read.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-metadata-utilities.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-project.R | 4 REDCapR-0.9.7/REDCapR/tests/testthat/test-read-batch-longitudinal.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-read-batch-simple.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-read-errors.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-read-oneshot.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-read-russian.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-retrieve-credential-local.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-retrieve-credential-mssql.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-retrieve-token.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-utilities.R | 4 REDCapR-0.9.7/REDCapR/tests/testthat/test-validate-for-write.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-write-batch.R |only REDCapR-0.9.7/REDCapR/tests/testthat/test-write-oneshot.R |only REDCapR-0.9.7/REDCapR/vignettes/BasicREDCapROperations.Rmd | 13 REDCapR-0.9.7/REDCapR/vignettes/SecurityDatabase.Rmd | 338 +++- REDCapR-0.9.7/REDCapR/vignettes/TroubleshootingApiCalls.Rmd | 201 +- 105 files changed, 1809 insertions(+), 1451 deletions(-)
Title: An R Interface to the Oniguruma Regular Expression Library
Description: Provides an alternative to R's built-in functionality for handling
regular expressions, based on the Oniguruma library. Offers first-class
compiled regex objects, partial matching and function-based substitutions,
amongst other features.
Author: Jon Clayden, based on Onigmo by K. Kosako and K. Takata
Maintainer: Jon Clayden <code@clayden.org>
Diff between ore versions 1.4.0 dated 2016-05-07 and 1.5.0 dated 2016-09-09
DESCRIPTION | 8 ++-- MD5 | 22 ++++++------ NAMESPACE | 6 ++- NEWS | 12 ++++++ R/match.R | 71 ++++++++++++++++++++++++++++++++--------- README.md | 2 - man/matches.Rd | 12 ++++-- man/ore.search.Rd | 19 ++++++++-- src/match.c | 5 +- src/split.c | 2 - src/subst.c | 4 -- tests/testthat/test-10-match.R | 12 ++++++ 12 files changed, 125 insertions(+), 50 deletions(-)
Title: Computerized Adaptive Testing with Multidimensional Item
Response Theory
Description: Provides tools to generate an HTML interface for creating adaptive
and non-adaptive educational and psychological tests using the shiny
package. Suitable for applying unidimensional and multidimensional
computerized adaptive tests using item response theory methodology and for
creating simple questionnaires forms to collect response data directly in R.
Package also contains tools useful for performing Monte Carlo simulations
for studying the behaviour of computerized adaptive test banks.
Author: Phil Chalmers [aut, cre, cph]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirtCAT versions 1.0 dated 2016-07-26 and 1.1 dated 2016-09-09
DESCRIPTION | 7 -- MD5 | 33 +++++----- NEWS.md | 28 +++++++++ R/PersonClass.R | 2 R/ShinyGUIClass.R | 21 +++++- R/createShinyGUI.R | 2 R/mirtCAT.R | 32 +++++++++- R/mirtCAT_preamble.R | 14 +++- R/server.R | 130 +++++++++++++++++++++--------------------- R/ui.R | 6 + R/util.R | 35 ++++++++++- R/zzz-methods.R | 4 - README.md | 2 build/vignette.rds |binary man/mirtCAT.Rd | 32 +++++++++- tests/GUI-tests/GUI-tests.R | 74 +++++++++++++++++++++-- tests/GUI-tests/bootstrap.css |only tests/GUI-tests/www |only 18 files changed, 318 insertions(+), 104 deletions(-)
Title: Procedures for Automated Interpolation
Description: Provides classes and methods for automated
spatial interpolation.
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>, Jon Olav Skoien
<jon.skoien@gmail.com> with contributions from Olivier Baume, A.Chorti, D.T.
Hristopulos, H. Kazianka, S.J. Melles, G. Spiliopoulos
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between intamap versions 1.3-37 dated 2013-11-25 and 1.4-1 dated 2016-09-09
DESCRIPTION | 24 - MD5 | 84 ++--- NAMESPACE | 17 - R/common.R | 2 R/default.R | 144 ++++---- R/estimateAnisotropy.R | 4 R/init.R | 26 + R/interpolate.R | 613 ++++++++++++++++++------------------- R/pointKriging.R | 4 R/spCopPred.R | 24 - R/transGaussian.R | 4 R/yamamoto.R | 8 man/bayesCopula.Rd | 6 man/blockPredict.Rd | 3 man/checkSetup.Rd | 99 +++-- man/coarsenGrid.Rd | 4 man/conformProjections.Rd | 3 man/copulaEstimation.Rd | 7 man/createIntamapObject.Rd | 303 +++++++++--------- man/estimateAnisotropy.Rd | 242 +++++++------- man/estimateParameters.Rd | 5 man/estimateTimeModel.Rd | 62 ++- man/generateTimeModels.Rd | 113 +++--- man/getIntamapParams.Rd | 3 man/getInterpolationMethodNames.Rd | 4 man/intObs.Rd | 3 man/intamap-package.Rd | 445 +++++++++++++------------- man/intamapExampleObject.Rd | 5 man/interpolate.Rd | 2 man/methodParameters.Rd | 5 man/plotIntamap.Rd | 144 ++++---- man/postProcess.Rd | 78 ++-- man/preProcess.Rd | 111 +++--- man/predictTime.Rd | 68 ++-- man/rotateAnisotropicData.Rd | 131 +++---- man/spatialPredict.Rd | 5 man/summaryIntamap.rd | 87 ++--- man/timeModels.Rd | 55 +-- man/unbiasedKrige.Rd | 3 man/yamamotoKrige.rd | 170 +++++----- tests/anisotropyTest.R | 12 tests/block.R | 2 tests/interpolate.R | 124 ++++--- 43 files changed, 1667 insertions(+), 1591 deletions(-)
Title: Robust Geostatistical Analysis of Spatial Data
Description: Provides functions for efficiently fitting linear models with
spatially correlated errors by robust and Gaussian (Restricted)
Maximum Likelihood and for computing robust and customary point
and block external-drift Kriging predictions, along with utility
functions for variogram modelling in ad hoc geostatistical analyses,
model building, model evaluation by cross-validation and for
unbiased back-transformation of Kriging predictions of
log-transformed data.
Author: Andreas Papritz [cre, aut],
Cornelia Schwierz [ctb]
Maintainer: Andreas Papritz <andreas.papritz@env.ethz.ch>
Diff between georob versions 0.3-0 dated 2016-09-08 and 0.3-1 dated 2016-09-09
georob-0.3-0/georob/demo |only georob-0.3-1/georob/ChangeLog | 6 georob-0.3-1/georob/DESCRIPTION | 6 georob-0.3-1/georob/MD5 | 24 georob-0.3-1/georob/NEWS | 3 georob-0.3-1/georob/R/georob.private.functions.R | 526 ++++++++++----- georob-0.3-1/georob/inst/doc/georob_vignette.R | 301 ++++---- georob-0.3-1/georob/inst/doc/georob_vignette.Rnw | 146 ++-- georob-0.3-1/georob/inst/doc/georob_vignette.pdf |binary georob-0.3-1/georob/man/fit.variogram.model.Rd | 9 georob-0.3-1/georob/vignettes/0-overview-zinc-meuse.pdf |binary georob-0.3-1/georob/vignettes/georob_vignette.Rnw | 146 ++-- georob-0.3-1/georob/vignettes/r_coalash_objects.RData |only georob-0.3-1/georob/vignettes/r_meuse_zinc_objects.RData |only 14 files changed, 740 insertions(+), 427 deletions(-)
Title: Forest Growth Model Utilities
Description: Growth models and forest production require existing data
manipulation and the creation of new data, structured from basic forest
inventory data. The purpose of this package is provide functions to support
these activities.
Author: Clayton Vieira Fraga Filho,
Ana Paula Simiqueli,
Gilson Fernandes da Silva,
Miqueias Fernandes,
Wagner Amorim da Silva Altoe
Maintainer: Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>
Diff between Fgmutils versions 0.8 dated 2016-08-07 and 0.9 dated 2016-09-09
DESCRIPTION | 8 +-- MD5 | 74 +++++++++++++++++++++++++++-- NAMESPACE | 40 +++++++++++++++ NEWS | 23 +++++++++ R/avaliaEstimativas.R |only R/avaliaVolumeAvancado.R |only R/calculaVolumeDefault.R |only R/contemParametros.R |only R/criaModeloExclusivo.R |only R/criaModeloGenerico.R |only R/estatisticas.R |only R/estatisticasBIAS.R |only R/estatisticasBiasPERCENTUAL.R |only R/estatisticasCE.R |only R/estatisticasCORR.R |only R/estatisticasCV.R |only R/estatisticasCorrPERCENTUAL.R |only R/estatisticasCvPERCENTUAL.R |only R/estatisticasMAE.R |only R/estatisticasR2.R |only R/estatisticasRMSE.R |only R/estatisticasRRMSE.R |only R/estatisticasResiduoPERCENTUAL.R |only R/estatisticasResiduos.R |only R/estatisticasRmsePERCENTUAL.R |only R/geraModelo.R |only R/getBaseOfAjust.R |only R/getColumnsOfAjust.R |only R/getColumnsOfBase.R |only R/getFormulaExclusivaOfAjust.R |only R/getGraphicHistogram.R |only R/getGraphicObservadoXEstimado.R |only R/getGraphicResiduoAbs.R |only R/getGraphicResiduoPerc.R |only R/getParametrosOfModel.R |only R/getggplot2GraphicObservadoXEstimado.R |only R/predizer.R |only R/salvaModelo.R |only man/avaliaEstimativas.Rd |only man/avaliaVolumeAvancado.Rd |only man/calculaVolumeDefault.Rd |only man/contemParametros.Rd |only man/criaModeloExclusivo.Rd |only man/criaModeloGenerico.Rd |only man/estatisticas.Rd |only man/estatisticasBIAS.Rd |only man/estatisticasBiasPERCENTUAL.Rd |only man/estatisticasCE.Rd |only man/estatisticasCORR.Rd |only man/estatisticasCV.Rd |only man/estatisticasCorrPERCENTUAL.Rd |only man/estatisticasCvPERCENTUAL.Rd |only man/estatisticasMAE.Rd |only man/estatisticasR2.Rd |only man/estatisticasRMSE.Rd |only man/estatisticasRRMSE.Rd |only man/estatisticasResiduoPERCENTUAL.Rd |only man/estatisticasResiduos.Rd |only man/estatisticasRmsePERCENTUAL.Rd |only man/geraModelo.Rd |only man/getBaseOfAjust.Rd |only man/getColumnsOfAjust.Rd |only man/getColumnsOfBase.Rd |only man/getFormulaExclusivaOfAjust.Rd |only man/getGraphicHistogram.Rd |only man/getGraphicObservadoXEstimado.Rd |only man/getGraphicResiduoAbs.Rd |only man/getGraphicResiduoPerc.Rd |only man/getParametrosOfModel.Rd |only man/getggplot2GraphicObservadoXEstimado.Rd |only man/predizer.Rd |only man/salvaModelo.Rd |only 72 files changed, 138 insertions(+), 7 deletions(-)
Title: Interpolation of Data with Variable Spatial Support
Description: Geostatistical interpolation of data with irregular spatial support such as runoff related data or data from administrative units.
Author: Jon Olav Skoien
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between rtop versions 0.5-5 dated 2015-07-27 and 0.5-9 dated 2016-09-09
DESCRIPTION | 14 +- MD5 | 62 ++++----- NAMESPACE | 1 R/checkVario.R | 53 +++++--- R/discAreas.R | 2 R/fitVariogram.R | 4 R/krige.R | 271 +++++++++++++++++++++++------------------ R/riverNetwork.R | 7 + R/rtop.R | 19 ++ R/rtopCluster.R | 6 R/rtopSim.R | 76 +++++++++-- R/sceua.R | 10 + R/varMat.R | 30 +++- inst/CITATION |only man/checkVario.Rd | 30 ++-- man/createRtopObject.Rd | 11 + man/downloadRtopExampleData.rd | 7 + man/gDist.Rd | 3 man/getRtopParams.Rd | 8 - man/netProp-deprecated.rd |only man/netProp.rd | 2 man/rtop-package.Rd | 2 man/rtopCluster.Rd | 3 man/rtopDisc.Rd | 154 ++++++++++++----------- man/rtopFitVariogram.Rd | 15 +- man/rtopKrige.Rd | 6 man/rtopSim.Rd | 22 ++- man/rtopVariogram.Rd | 13 + man/sceua.Rd | 21 +-- man/useRtopWithIntamap.Rd | 10 + man/varMat.Rd | 19 ++ src/vred.f | 2 tests/rtop.R | 23 ++- 33 files changed, 579 insertions(+), 327 deletions(-)
Title: R Interface to the Protocol Buffers API (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our paper
in the Journal of Statistical Software (2016, v71i02). Either version 2 or 3
of the Protocol Buffers API is supported.
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.5 dated 2016-08-29 and 0.4.6 dated 2016-09-09
ChangeLog | 23 +++++++++++++++++ DESCRIPTION | 10 +++---- MD5 | 26 +++++++++---------- R/rexp_obj.R | 9 +++++- README.md | 48 +++++++++++++++++++++++++++++++----- inst/NEWS.Rd | 34 +++++++++++++++++++++---- inst/doc/RProtoBuf-intro.pdf |binary inst/doc/RProtoBuf-paper.Rnw | 2 - inst/doc/RProtoBuf-paper.pdf |binary inst/doc/RProtoBuf-quickref.pdf |binary inst/doc/RProtoBuf-unitTests.pdf |binary inst/unitTests/runit.serialize_pb.R | 6 +++- vignettes/RProtoBuf-paper.Rnw | 2 - vignettes/figures/fig-SER.pdf |binary 14 files changed, 124 insertions(+), 36 deletions(-)
Title: Import 'Stata' Data Files
Description: Function to read and write the 'Stata' file format.
Author: Jan Marvin Garbuszus [aut],
Sebastian Jeworutzki [aut, cre],
R Core Team [cph],
Magnus Thor Torfason [ctb]
Maintainer: Sebastian Jeworutzki <Sebastian.Jeworutzki@ruhr-uni-bochum.de>
Diff between readstata13 versions 0.8.4 dated 2016-09-06 and 0.8.5 dated 2016-09-09
readstata13-0.8.4/readstata13/man/stata_pre13_save.Rd |only readstata13-0.8.5/readstata13/DESCRIPTION | 6 readstata13-0.8.5/readstata13/MD5 | 27 ++-- readstata13-0.8.5/readstata13/NAMESPACE | 1 readstata13-0.8.5/readstata13/NEWS | 3 readstata13-0.8.5/readstata13/R/RcppExports.R | 5 readstata13-0.8.5/readstata13/R/read.R | 2 readstata13-0.8.5/readstata13/README.md | 8 - readstata13-0.8.5/readstata13/inst/include/swap_endian.h | 7 - readstata13-0.8.5/readstata13/man/read.dta13.Rd | 6 readstata13-0.8.5/readstata13/src/rcpp_pre13_savestata.cpp | 54 ++++---- readstata13-0.8.5/readstata13/src/rcpp_savestata.cpp | 79 ++++++------- readstata13-0.8.5/readstata13/src/read_dta.cpp | 45 ++++--- readstata13-0.8.5/readstata13/tests/testthat/test_read.R | 2 readstata13-0.8.5/readstata13/tests/testthat/test_save.R | 3 15 files changed, 128 insertions(+), 120 deletions(-)
Title: Functions for Visualising Sets of Ontological Terms
Description: Functions for visualising sets of ontological terms using the graphviz layout system.
Author: Daniel Greene <dg333@cam.ac.uk>
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between ontologyPlot versions 1.0 dated 2016-01-11 and 1.3 dated 2016-09-09
ontologyPlot-1.0/ontologyPlot/inst/doc/ontologyPlot-guide.R |only ontologyPlot-1.0/ontologyPlot/inst/doc/ontologyPlot-guide.Rmd |only ontologyPlot-1.0/ontologyPlot/inst/doc/ontologyPlot-guide.html |only ontologyPlot-1.0/ontologyPlot/vignettes/ontologyPlot-guide.Rmd |only ontologyPlot-1.3/ontologyPlot/DESCRIPTION | 10 ontologyPlot-1.3/ontologyPlot/MD5 | 41 + ontologyPlot-1.3/ontologyPlot/NAMESPACE | 20 ontologyPlot-1.3/ontologyPlot/R/annotation_grid.R |only ontologyPlot-1.3/ontologyPlot/R/attributes.R | 28 - ontologyPlot-1.3/ontologyPlot/R/data.R | 7 ontologyPlot-1.3/ontologyPlot/R/graphs.R | 220 +++++++--- ontologyPlot-1.3/ontologyPlot/R/sets.R | 96 +--- ontologyPlot-1.3/ontologyPlot/build/vignette.rds |binary ontologyPlot-1.3/ontologyPlot/inst/doc/plotting-ontological-terms.R |only ontologyPlot-1.3/ontologyPlot/inst/doc/plotting-ontological-terms.Rmd |only ontologyPlot-1.3/ontologyPlot/inst/doc/plotting-ontological-terms.html |only ontologyPlot-1.3/ontologyPlot/inst/doc/plotting-term-grids.R |only ontologyPlot-1.3/ontologyPlot/inst/doc/plotting-term-grids.Rmd |only ontologyPlot-1.3/ontologyPlot/inst/doc/plotting-term-grids.html |only ontologyPlot-1.3/ontologyPlot/man/annotation_grid.Rd |only ontologyPlot-1.3/ontologyPlot/man/colour_by_term_set.Rd | 7 ontologyPlot-1.3/ontologyPlot/man/dot_string.Rd |only ontologyPlot-1.3/ontologyPlot/man/get_ontology_plot.Rd |only ontologyPlot-1.3/ontologyPlot/man/grid_terms.Rd |only ontologyPlot-1.3/ontologyPlot/man/onto_plot.Rd | 19 ontologyPlot-1.3/ontologyPlot/man/ontologyPlot-package.Rd | 2 ontologyPlot-1.3/ontologyPlot/man/plot_annotation_grid.Rd |only ontologyPlot-1.3/ontologyPlot/man/to_svg_string.Rd |only ontologyPlot-1.3/ontologyPlot/man/write_dot.Rd | 6 ontologyPlot-1.3/ontologyPlot/vignettes/plotting-ontological-terms.Rmd |only ontologyPlot-1.3/ontologyPlot/vignettes/plotting-term-grids.Rmd |only 31 files changed, 291 insertions(+), 165 deletions(-)
Title: Manage, Analyse and Simulate Hyperspectral Data
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut],
Hanna Meyer [aut],
Joerg Bendix [aut]
Maintainer: Lukas W. Lehnert <lukaslehnert@googlemail.com>
Diff between hsdar versions 0.4.1 dated 2016-02-23 and 0.5.0 dated 2016-09-09
ChangeLog | 24 DESCRIPTION | 16 MD5 | 101 R/AAAClasses.R | 10 R/continuum_features_properties.R | 7 R/continuum_transform.R | 137 R/distance.R | 18 R/multicore_funtions.R |only R/nri.R | 4 R/nri_glm.R | 88 R/nri_multivariate.R | 5 R/nri_plot.R | 16 R/nri_subset.R |only R/speclib_fwhm.R |only R/speclib_index.R | 10 R/speclib_mask.R | 5 R/speclib_merge.R | 3 R/speclib_subset.R | 4 R/spectral_resampling.R | 8 R/spectral_resampling_response_functions.R | 14 R/spectral_resampling_sensorCharacteristics.R | 16 R/vegindex.R | 9 R/zzz.R | 1 build/hsdar.pdf |binary build/vignette.rds |binary data/Sentinel2A_response.csv.xz |only data/cancer_spectra.RData |binary data/spectral_data.RData |binary inst/doc/Hsdar-intro.R | 324 + inst/doc/Hsdar-intro.Rnw | 192 - inst/doc/Hsdar-intro.pdf |binary inst/doc/References.pdf |binary man/hsdar_parallel.Rd |only man/normalized.ratio.index.best.perfomance.Rd | 6 man/plot.glm.normalized.ratio.index.Rd | 8 man/response_functions.Rd | 2 man/subset_nri.Rd |only man/subset_speclib.Rd | 6 man/vegindex.Rd | 6 man/wavelength.Rd | 14 src/LIDF.f90 | 104 src/MODULE_PRO4SAIL.f90 | 38 src/PRO4SAIL.f90 | 524 +-- src/adminparallel.f90 |only src/apply_response.f90 | 7 src/c2lablas.f | 3 src/dataSpec_P5B_PROSAIL.f90 | 4390 +++++++++++++------------- src/dataSpec_P5B_PROSPECT.f90 | 202 - src/dladgen.f | 42 src/main_PROSAIL.f90 | 214 - src/main_PROSPECT.f90 | 2 src/prospect_5B.f90 | 56 src/tav_abs.f90 | 12 src/volscatt.f90 | 86 vignettes/Hsdar-intro.Rnw | 192 - 55 files changed, 3600 insertions(+), 3326 deletions(-)
Title: Empirical CDF for Heavy Tailed Data
Description: Computes and plots a transformed empirical CDF (ecdf) as a
diagnostic for heavy tailed data, specifically data with power law decay on the
tails. Routines for annotating the plot, comparing data to a model, fitting a
nonparametric model, and some multivariate extensions are given.
Author: John P Nolan <jpnolan@american.edu>
Maintainer: John P Nolan <jpnolan@american.edu>
Diff between ecdfHT versions 0.1.0 dated 2016-09-01 and 0.1.1 dated 2016-09-09
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Bayesian Estimation of Mixtures of Multivariate Bernoulli
Distributions
Description: Fully Bayesian inference for estimating the number of clusters and related parameters to heterogeneous binary data.
Author: Panagiotis Papastamoulis
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>
Diff between BayesBinMix versions 1.2 dated 2016-04-23 and 1.3 dated 2016-09-09
DESCRIPTION | 8 MD5 | 15 - NAMESPACE | 2 R/coupledMetropolis.R | 281 +++++++++++++++++++++++++++++------ man/BayesBinMix-package.Rd | 4 man/allocationSamplerBinMix.Rd | 18 +- man/coupledMetropolis.Rd | 16 + man/dealWithLabelSwitching.Rd | 6 man/dealWithLabelSwitchingMissing.Rd |only 9 files changed, 283 insertions(+), 67 deletions(-)
Title: Obtain Alpha-Outlier Regions for Well-Known Probability
Distributions
Description: Given the parameters of a distribution, the package uses the concept of alpha-outliers by Davies and Gather (1993) to flag outliers in a data set. See Davies, L.; Gather, U. (1993): The identification of multiple outliers, JASA, 88 423, 782-792, <doi:10.1080/01621459.1993.10476339> for details.
Author: Andre Rehage, Sonja Kuhnt
Maintainer: Andre Rehage <rehage@statistik.tu-dortmund.de>
Diff between alphaOutlier versions 1.1.0 dated 2015-07-01 and 1.2.0 dated 2016-09-09
DESCRIPTION | 13 +++++++------ MD5 | 10 ++++++---- NAMESPACE | 21 +++------------------ NEWS | 7 +++++++ R/aout.kernel.R |only man/aout.conttab.Rd | 2 +- man/aout.kernel.Rd |only 7 files changed, 24 insertions(+), 29 deletions(-)
Title: Functions for Calculating Ontological Similarities
Description: Functions for calculating semantic similarities between ontological terms or sets of ontological terms based on term information content and assessing statistical significance of similarity in the context of a collection of sets of ontological terms.
Author: Daniel Greene
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between ontologySimilarity versions 2.0 dated 2016-08-05 and 2.1 dated 2016-09-09
ontologySimilarity-2.0/ontologySimilarity/src/RcppExports.h |only ontologySimilarity-2.1/ontologySimilarity/DESCRIPTION | 8 ontologySimilarity-2.1/ontologySimilarity/MD5 | 39 - ontologySimilarity-2.1/ontologySimilarity/R/RcppExports.R |only ontologySimilarity-2.1/ontologySimilarity/R/data.R |only ontologySimilarity-2.1/ontologySimilarity/R/functions.R | 8 ontologySimilarity-2.1/ontologySimilarity/R/group-sim.R | 14 ontologySimilarity-2.1/ontologySimilarity/R/term-set-sim.R | 12 ontologySimilarity-2.1/ontologySimilarity/build/vignette.rds |binary ontologySimilarity-2.1/ontologySimilarity/data |only ontologySimilarity-2.1/ontologySimilarity/inst/doc/ontologySimilarity-GO-example.R |only ontologySimilarity-2.1/ontologySimilarity/inst/doc/ontologySimilarity-GO-example.Rmd |only ontologySimilarity-2.1/ontologySimilarity/inst/doc/ontologySimilarity-GO-example.html |only ontologySimilarity-2.1/ontologySimilarity/inst/doc/ontologySimilarity-examples.R | 2 ontologySimilarity-2.1/ontologySimilarity/inst/doc/ontologySimilarity-examples.Rmd | 8 ontologySimilarity-2.1/ontologySimilarity/inst/doc/ontologySimilarity-examples.html | 16 ontologySimilarity-2.1/ontologySimilarity/inst/doc/ontologySimilarity-introduction.Rmd | 4 ontologySimilarity-2.1/ontologySimilarity/inst/doc/ontologySimilarity-introduction.html | 8 ontologySimilarity-2.1/ontologySimilarity/man/GO_IC.Rd |only ontologySimilarity-2.1/ontologySimilarity/man/gene_GO_terms.Rd |only ontologySimilarity-2.1/ontologySimilarity/src/Interface.cpp |only ontologySimilarity-2.1/ontologySimilarity/src/Interface.h |only ontologySimilarity-2.1/ontologySimilarity/src/RcppExports.cpp | 297 +++------- ontologySimilarity-2.1/ontologySimilarity/vignettes/ontologySimilarity-GO-example.Rmd |only ontologySimilarity-2.1/ontologySimilarity/vignettes/ontologySimilarity-examples.Rmd | 8 ontologySimilarity-2.1/ontologySimilarity/vignettes/ontologySimilarity-introduction.Rmd | 4 26 files changed, 158 insertions(+), 270 deletions(-)
More information about ontologySimilarity at CRAN
Permanent link
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre],
Michael Dietze [aut],
Christoph Burow [aut, trl, dtc],
Margret C. Fuchs [aut],
Christoph Schmidt [aut],
Manfred Fischer [aut, trl],
Johannes Friedrich [aut],
Norbert Mercier [aut],
Rachel K. Smedley [aut],
Julie Durcan [aut],
Georgina King [aut],
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between Luminescence versions 0.6.2 dated 2016-09-01 and 0.6.4 dated 2016-09-09
DESCRIPTION | 10 +-- MD5 | 60 ++++++++++----------- NEWS | 73 +++----------------------- R/Luminescence-package.R | 6 +- R/RcppExports.R | 2 R/analyse_baSAR.R | 8 +- R/analyse_pIRIRSequence.R | 9 ++- R/get_Quote.R | 2 R/plot_AbanicoPlot.R | 16 ++--- R/report_RLum.R | 23 ++++---- inst/NEWS.Rd | 91 ++------------------------------- man/Luminescence-package.Rd | 6 +- man/Risoe.BINfileData2RLum.Analysis.Rd | 2 man/analyse_baSAR.Rd | 2 man/analyse_pIRIRSequence.Rd | 2 man/calc_MinDose.Rd | 2 man/calc_OSLLxTxRatio.Rd | 2 man/calc_gSGC.Rd | 2 man/get_Quote.Rd | 2 man/merge_RLum.Data.Curve.Rd | 2 man/merge_Risoe.BINfileData.Rd | 2 man/plot_AbanicoPlot.Rd | 2 man/plot_DRTResults.Rd | 2 man/plot_GrowthCurve.Rd | 2 man/plot_KDE.Rd | 2 man/plot_RLum.Analysis.Rd | 2 man/plot_RLum.Data.Spectrum.Rd | 2 man/plot_RLum.Rd | 2 man/read_XSYG2R.Rd | 2 man/report_RLum.Rd | 2 src/RcppExports.cpp | 18 +++--- 31 files changed, 118 insertions(+), 242 deletions(-)
Title: Quantile Universal Threshold
Description: Selection of a threshold parameter for GLM-lasso and Square-root lasso to obtain a sparse model
with a good compromise between high true positive rate and low false discovery rate.
Author: Jairo Diaz Rodriguez, Sylvain Sardy, Caroline Giacobino, Nick Hengartner.
Maintainer: Jairo Diaz Rodriguez<jairo.diaz@unige.ch>
Diff between qut versions 1.0.1 dated 2015-11-23 and 1.1 dated 2016-09-09
qut-1.0.1/qut/data/leukemia.rda |only qut-1.0.1/qut/man/leukemia.Rd |only qut-1.1/qut/DESCRIPTION | 14 ++--- qut-1.1/qut/MD5 | 36 +++++++------- qut-1.1/qut/NAMESPACE | 4 - qut-1.1/qut/R/coef.qut.R | 2 qut-1.1/qut/R/lambdaqut.R | 96 ++++++++++++++++++++++++++------------ qut-1.1/qut/R/predict.qut.R | 14 +++-- qut-1.1/qut/R/qut.R | 81 ++++++++++++++++++++++---------- qut-1.1/qut/R/sigmaqut.R | 4 + qut-1.1/qut/R/slimsd.R |only qut-1.1/qut/data/chemometrics.rda |only qut-1.1/qut/data/datalist | 3 - qut-1.1/qut/data/internetAd.rda |only qut-1.1/qut/data/riboflavin.rda |binary qut-1.1/qut/man/chemometrics.Rd |only qut-1.1/qut/man/internetAd.Rd |only qut-1.1/qut/man/lambdaqut.Rd | 15 ++++- qut-1.1/qut/man/predict.qut.Rd | 14 +---- qut-1.1/qut/man/qut-package.Rd | 10 +-- qut-1.1/qut/man/qut.Rd | 33 +++++-------- qut-1.1/qut/man/sigmarcv.Rd | 2 qut-1.1/qut/man/slimsd.Rd |only 23 files changed, 208 insertions(+), 120 deletions(-)
Title: Recursive Partitioning Based on Psychometric Models
Description: Recursive partitioning based on psychometric models,
employing the general MOB algorithm (from package partykit) to obtain
Bradley-Terry trees, Rasch trees, rating scale and partial credit trees, and
MPT trees.
Author: Achim Zeileis [aut, cre],
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Basil Komboz [aut],
Julia Kopf [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between psychotree versions 0.15-0 dated 2015-01-19 and 0.15-1 dated 2016-09-09
psychotree-0.15-0/psychotree/inst/PCModel.R |only psychotree-0.15-0/psychotree/inst/RSModel.R |only psychotree-0.15-0/psychotree/inst/RaschModel.R |only psychotree-0.15-0/psychotree/inst/btReg.R |only psychotree-0.15-0/psychotree/inst/old-bttree.R |only psychotree-0.15-0/psychotree/inst/old-pctree.R |only psychotree-0.15-0/psychotree/inst/old-raschtree.R |only psychotree-0.15-0/psychotree/inst/old-rstree.R |only psychotree-0.15-1/psychotree/DESCRIPTION | 16 +- psychotree-0.15-1/psychotree/MD5 | 50 +++----- psychotree-0.15-1/psychotree/NAMESPACE | 1 psychotree-0.15-1/psychotree/NEWS | 10 + psychotree-0.15-1/psychotree/build/partial.rdb |only psychotree-0.15-1/psychotree/build/vignette.rds |binary psychotree-0.15-1/psychotree/data/CEMSChoice.rda |binary psychotree-0.15-1/psychotree/data/DIFSim.rda |binary psychotree-0.15-1/psychotree/data/DIFSimPC.rda |only psychotree-0.15-1/psychotree/data/EuropeanValuesStudy.rda |binary psychotree-0.15-1/psychotree/data/SPISA.rda |binary psychotree-0.15-1/psychotree/data/Topmodel2007.rda |binary psychotree-0.15-1/psychotree/inst/CITATION | 56 ++++++---- psychotree-0.15-1/psychotree/inst/doc/raschtree.pdf |binary psychotree-0.15-1/psychotree/man/DIFSim.Rd | 48 +++++--- psychotree-0.15-1/psychotree/man/EuropeanValuesStudy.Rd | 3 psychotree-0.15-1/psychotree/man/SPISA.Rd | 2 psychotree-0.15-1/psychotree/man/bttree.Rd | 6 - psychotree-0.15-1/psychotree/man/mpttree.Rd | 23 +--- psychotree-0.15-1/psychotree/man/pctree.Rd | 21 ++- psychotree-0.15-1/psychotree/man/raschtree.Rd | 15 +- psychotree-0.15-1/psychotree/man/rstree.Rd | 14 +- psychotree-0.15-1/psychotree/tests/Examples/psychotree-Ex.Rout.save | 37 ++++-- 31 files changed, 178 insertions(+), 124 deletions(-)
Title: Analysing Inbreeding Based on Genetic Markers
Description: A framework for analysing inbreeding and heterozygosity-fitness
correlations (HFCs) based on microsatellite and SNP markers.
Author: Martin A. Stoffel [aut, cre],
Mareike Esser [aut],
Joseph Hoffman [aut],
Marty Kardos [aut]
Maintainer: Martin A. Stoffel <martin.adam.stoffel@gmail.com>
Diff between inbreedR versions 0.3.1 dated 2016-03-21 and 0.3.2 dated 2016-09-09
DESCRIPTION | 6 MD5 | 18 README.md | 2 build/vignette.rds |binary inst/CITATION | 18 inst/doc/inbreedR_step_by_step.R | 298 ++++++------- inst/doc/inbreedR_step_by_step.Rmd | 663 +++++++++++++++--------------- inst/doc/inbreedR_step_by_step.html | 793 ++++++++++++++++++------------------ vignettes/bibliography.bib | 19 vignettes/inbreedR_step_by_step.Rmd | 17 10 files changed, 973 insertions(+), 861 deletions(-)
Title: Alluvial Diagrams
Description: Creating alluvial diagrams (also known as parallel sets plots) for multivariate
and time series-like data.
Author: Michal Bojanowski [aut, cre],
Robin Edwards [aut]
Maintainer: Michal Bojanowski <michal2992@gmail.com>
Diff between alluvial versions 0.1-1 dated 2016-08-02 and 0.1-2 dated 2016-09-09
alluvial-0.1-1/alluvial/inst/tests |only alluvial-0.1-2/alluvial/DESCRIPTION | 11 +-- alluvial-0.1-2/alluvial/MD5 | 15 +++- alluvial-0.1-2/alluvial/NEWS.md |only alluvial-0.1-2/alluvial/README.md | 81 ++++++++++++++++++++++++- alluvial-0.1-2/alluvial/build |only alluvial-0.1-2/alluvial/inst/doc |only alluvial-0.1-2/alluvial/tests/testall.R | 2 alluvial-0.1-2/alluvial/tests/testthat |only alluvial-0.1-2/alluvial/vignettes/alluvial.Rmd | 16 +++- 10 files changed, 107 insertions(+), 18 deletions(-)
Title: Tropical Fisheries Analysis with R
Description: Fish stock assessment methods and fisheries models based on the FAO
Manual "Introduction to tropical fish stock assessment" by P. Sparre and
S.C. Venema <http://www.fao.org/docrep/W5449E/W5449E00.htm>. Focus is the
analysis of length-frequency data and data poor fisheries.
Author: Tobias K. Mildenberger, Marc H. Taylor, Matthias Wolff
Maintainer: Tobias K. Mildenberger <t.k.mildenberger@gmail.com>
Diff between TropFishR versions 0.1 dated 2016-07-03 and 1.0.0 dated 2016-09-09
TropFishR-0.1/TropFishR/R/trout.R |only TropFishR-0.1/TropFishR/data/trout.rda |only TropFishR-0.1/TropFishR/man/trout.Rd |only TropFishR-1.0.0/TropFishR/DESCRIPTION | 16 TropFishR-1.0.0/TropFishR/MD5 | 125 +-- TropFishR-1.0.0/TropFishR/NAMESPACE | 24 TropFishR-1.0.0/TropFishR/R/ELEFAN.R | 211 +++-- TropFishR-1.0.0/TropFishR/R/ELEFAN_GA.R |only TropFishR-1.0.0/TropFishR/R/ELEFAN_SA.R |only TropFishR-1.0.0/TropFishR/R/M_empirical.R | 12 TropFishR-1.0.0/TropFishR/R/VBGF.R | 83 +- TropFishR-1.0.0/TropFishR/R/catchCurve.R | 81 +- TropFishR-1.0.0/TropFishR/R/date2yeardec.R |only TropFishR-1.0.0/TropFishR/R/gillnetfit.R |only TropFishR-1.0.0/TropFishR/R/goatfish.R | 4 TropFishR-1.0.0/TropFishR/R/growth_length_age.R | 161 +++- TropFishR-1.0.0/TropFishR/R/haddock.R | 2 TropFishR-1.0.0/TropFishR/R/lfqFitCurves.R | 339 +++------ TropFishR-1.0.0/TropFishR/R/lfqRestructure.R | 334 +++----- TropFishR-1.0.0/TropFishR/R/plot.catchCurve.R | 5 TropFishR-1.0.0/TropFishR/R/plot.lfq.R | 275 +++---- TropFishR-1.0.0/TropFishR/R/plot.predict_mod.R | 20 TropFishR-1.0.0/TropFishR/R/plot.prod_mod_ts.R | 2 TropFishR-1.0.0/TropFishR/R/plot.select.R | 7 TropFishR-1.0.0/TropFishR/R/plot.select_Millar.R | 84 +- TropFishR-1.0.0/TropFishR/R/powell_wetherall.R | 66 + TropFishR-1.0.0/TropFishR/R/predict_mod.R | 752 ++++++-------------- TropFishR-1.0.0/TropFishR/R/prod_mod_ts.R | 1 TropFishR-1.0.0/TropFishR/R/rcurves_Millar.R |only TropFishR-1.0.0/TropFishR/R/recruitment.R | 16 TropFishR-1.0.0/TropFishR/R/rtypes_Millar.R | 6 TropFishR-1.0.0/TropFishR/R/select_Millar.R | 230 +++--- TropFishR-1.0.0/TropFishR/R/synLFQ1.R | 8 TropFishR-1.0.0/TropFishR/R/synLFQ2.R | 5 TropFishR-1.0.0/TropFishR/R/synLFQ3.R | 2 TropFishR-1.0.0/TropFishR/R/synLFQ4.R |only TropFishR-1.0.0/TropFishR/R/synLFQ5.R |only TropFishR-1.0.0/TropFishR/R/yeardec2date.R |only TropFishR-1.0.0/TropFishR/R/ypr.R |only TropFishR-1.0.0/TropFishR/R/ypr_sel.R |only TropFishR-1.0.0/TropFishR/README.md | 29 TropFishR-1.0.0/TropFishR/data/synLFQ1.rda |binary TropFishR-1.0.0/TropFishR/data/synLFQ2.rda |binary TropFishR-1.0.0/TropFishR/data/synLFQ4.rda |only TropFishR-1.0.0/TropFishR/data/synLFQ5.rda |only TropFishR-1.0.0/TropFishR/man/ELEFAN.Rd | 97 +- TropFishR-1.0.0/TropFishR/man/ELEFAN_GA.Rd |only TropFishR-1.0.0/TropFishR/man/ELEFAN_SA.Rd |only TropFishR-1.0.0/TropFishR/man/M_empirical.Rd | 8 TropFishR-1.0.0/TropFishR/man/VBGF.Rd | 37 TropFishR-1.0.0/TropFishR/man/catchCurve.Rd | 27 TropFishR-1.0.0/TropFishR/man/date2yeardec.Rd |only TropFishR-1.0.0/TropFishR/man/gillnetfit.Rd |only TropFishR-1.0.0/TropFishR/man/goatfish.Rd | 4 TropFishR-1.0.0/TropFishR/man/growth_length_age.Rd | 46 - TropFishR-1.0.0/TropFishR/man/haddock.Rd | 2 TropFishR-1.0.0/TropFishR/man/lfqFitCurves.Rd | 81 +- TropFishR-1.0.0/TropFishR/man/lfqRestructure.Rd | 62 + TropFishR-1.0.0/TropFishR/man/plot.lfq.Rd | 72 + TropFishR-1.0.0/TropFishR/man/plot.predict_mod.Rd | 5 TropFishR-1.0.0/TropFishR/man/plot.select_Millar.Rd | 23 TropFishR-1.0.0/TropFishR/man/powell_wetherall.Rd | 13 TropFishR-1.0.0/TropFishR/man/predict_mod.Rd | 61 - TropFishR-1.0.0/TropFishR/man/prod_mod_ts.Rd | 1 TropFishR-1.0.0/TropFishR/man/rcurves_Millar.Rd |only TropFishR-1.0.0/TropFishR/man/recruitment.Rd | 16 TropFishR-1.0.0/TropFishR/man/rtypes_Millar.Rd | 4 TropFishR-1.0.0/TropFishR/man/select_Millar.Rd | 30 TropFishR-1.0.0/TropFishR/man/synLFQ1.Rd | 8 TropFishR-1.0.0/TropFishR/man/synLFQ2.Rd | 5 TropFishR-1.0.0/TropFishR/man/synLFQ3.Rd | 2 TropFishR-1.0.0/TropFishR/man/synLFQ4.Rd |only TropFishR-1.0.0/TropFishR/man/synLFQ5.Rd |only TropFishR-1.0.0/TropFishR/man/yeardec2date.Rd |only TropFishR-1.0.0/TropFishR/man/ypr.Rd |only TropFishR-1.0.0/TropFishR/man/ypr_sel.Rd |only 76 files changed, 1789 insertions(+), 1715 deletions(-)
Title: Infrastructure for Psychometric Modeling
Description: Infrastructure for psychometric modeling such as data classes
(for item response data and paired comparisons), basic model fitting
functions (for Bradley-Terry, Rasch, partial credit, rating scale,
multinomial processing tree models), extractor functions for different types
of parameters (item, person, threshold, discrimination), unified inference
and visualizations, and various datasets for illustration. Intended as a
common lightweight and efficient toolbox for psychometric modeling and a
common building block for fitting psychometric mixture models in package
"psychomix" and trees based on psychometric models in package "psychotree".
Author: Achim Zeileis [aut, cre],
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Basil Komboz [aut],
Julia Kopf [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between psychotools versions 0.4-1 dated 2016-07-26 and 0.4-2 dated 2016-09-09
DESCRIPTION | 14 +++++++------- MD5 | 18 ++++++++++-------- NEWS | 10 ++++++++++ build/partial.rdb |binary data/MemoryDeficits.rda |binary data/PairClustering.rda |only inst/CITATION | 4 ++-- man/PairClustering.Rd |only man/StereotypeThreat.Rd | 2 +- src/esf.c | 2 +- tests/Examples/psychotools-Ex.Rout.save | 25 +++++++++++++++++++++++-- 11 files changed, 54 insertions(+), 21 deletions(-)
Title: Calculate Accurate Precision-Recall and Receiver Operator
Characteristics Curves
Description: Accurate calculations and visualization of Precision-Recall and Receiver Operator Characteristics
curves.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.4.0 dated 2016-06-24 and 0.5.0 dated 2016-09-09
DESCRIPTION | 8 - MD5 | 53 +++--- NAMESPACE | 9 + R/RcppExports.R | 2 R/etc_utils_autoplot.R | 50 ++++-- R/etc_utils_plot.R | 65 +++++--- R/etc_utils_validate_args.R | 17 ++ R/g_auc.R | 3 R/g_fortify.R | 1 R/g_part.R |only R/g_pauc.R |only R/g_print.R | 19 ++ R/main_evalmod.R | 3 R/mm1_create_mmdat.R | 2 R/pl2_pipeline_main_rocprc.R | 6 R/pl5_create_curves.R | 4 R/pl6_calc_average.R | 2 README.md | 63 +++++++- build/vignette.rds |binary inst/CITATION |only inst/doc/introduction.R | 69 +++++---- inst/doc/introduction.Rmd | 158 ++++++++++++-------- inst/doc/introduction.html | 321 +++++++++++++++++++++++++----------------- man/auc.Rd | 8 - man/part.Rd |only man/pauc.Rd |only src/RcppExports.cpp | 74 ++++----- tests/testthat/test_g_part.R |only tests/testthat/test_g_pauc.R |only tests/testthat/test_g_print.R | 32 ++++ vignettes/introduction.Rmd | 158 ++++++++++++-------- 31 files changed, 732 insertions(+), 395 deletions(-)
Title: Testing Workbench for Precision-Recall Curves
Description: A testing workbench for evaluating Precision-Recall curves under various conditions.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between prcbench versions 0.4.0 dated 2016-06-15 and 0.5.0 dated 2016-09-09
DESCRIPTION | 8 ++++---- MD5 | 34 ++++++++++++++++++---------------- R/tool_zzz.R | 20 ++++++++++++++------ README.md | 37 ++++++++++++++++++++++++------------- build/vignette.rds |binary data/C1DATA.rda |binary data/C2DATA.rda |binary data/C3DATA.rda |binary data/C4DATA.rda |binary inst/CITATION |only inst/doc/introduction.html | 28 ++++++++++++++-------------- java/auc2/auc2.iml |only man/ToolAUCCalculator.Rd | 3 ++- man/ToolIFBase.Rd | 3 ++- man/ToolPRROC.Rd | 3 ++- man/ToolPerfMeas.Rd | 3 ++- man/ToolROCR.Rd | 3 ++- man/Toolprecrec.Rd | 3 ++- tests/testthat/test_data_curve.R | 4 ++-- 19 files changed, 88 insertions(+), 61 deletions(-)
More information about PlasmaMutationDetector at CRAN
Permanent link
Title: Functions for Generating Restricted Permutations of Data
Description: A set of restricted permutation designs for freely exchangeable, line transects (time series), and spatial grid designs plus permutation of blocks (groups of samples) is provided. 'permute' also allows split-plot designs, in which the whole-plots or split-plots or both can be freely-exchangeable or one of the restricted designs. The 'permute' package is modelled after the permutation schemes of 'Canoco 3.1' (and later) by Cajo ter Braak.
Author: Gavin L. Simpson [aut, cph, cre],
R Core Team [cph],
Douglas M. Bates [ctb],
Jari Oksanen [ctb]
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between permute versions 0.9-0 dated 2016-01-24 and 0.9-4 dated 2016-09-09
DESCRIPTION | 8 +- MD5 | 55 +++++++------- NAMESPACE | 6 + R/allPerms.R | 4 - R/as.allPerms.R |only R/getFoo-methods.R | 21 +++++ R/nobs-methods.R | 4 + R/setFoo-methods.R | 5 - R/shuffle.R | 11 ++ R/shuffleSet.R | 6 - README.md | 8 -- build/vignette.rds |binary inst/ChangeLog | 15 +++ inst/NEWS | 22 +++++ inst/doc/permutations.pdf |binary man/allPerms.Rd | 7 + man/check.Rd | 2 man/get-methods.Rd | 10 ++ man/nobs.Rd | 9 ++ man/shuffle.Rd | 4 - man/shuffleSet.Rd | 4 - tests/Examples/permute-Ex.Rout.save | 14 +-- tests/testthat/test-allPerms.R | 9 ++ tests/testthat/test-as-methods.R | 7 + tests/testthat/test-get-methods.R | 20 +++++ tests/testthat/test-how.R | 6 + tests/testthat/test-nobs.R | 7 + tests/testthat/test-shuffle.R | 57 ++++++++++++++- tests/testthat/test-shuffleSet.R | 136 ++++++++++++++++++++++++++++++++++++ 29 files changed, 398 insertions(+), 59 deletions(-)
Title: Leland Wilkinson's Algorithm for Detecting Multidimensional
Outliers
Description: An implementation of an algorithm for outlier detection that can handle a) data with a mixed categorical and continuous variables, b) many columns of data, c) many rows of data, d) outliers that mask other outliers, and e) both unidimensional and multidimensional datasets. Unlike ad hoc methods found in many machine learning papers, HDoutliers is based on a distributional model that uses probabilities to determine outliers.
Author: Leland Wilkinson [aut], Chris Fraley [cre]
Maintainer: Chris Fraley <cfraley@tableau.com>
Diff between HDoutliers versions 0.5 dated 2016-07-18 and 0.8 dated 2016-09-09
HDoutliers-0.5/HDoutliers/vignettes |only HDoutliers-0.8/HDoutliers/CHANGELOG |only HDoutliers-0.8/HDoutliers/DESCRIPTION | 8 ++++---- HDoutliers-0.8/HDoutliers/MD5 | 7 ++++--- HDoutliers-0.8/HDoutliers/R/HDoutliers.R | 6 ++++-- HDoutliers-0.8/HDoutliers/inst |only 6 files changed, 12 insertions(+), 9 deletions(-)
Title: Forecasting Functions for Time Series and Linear Models
Description: Methods and tools for displaying and analysing
univariate time series forecasts including exponential smoothing
via state space models and automatic ARIMA modelling.
Author: Rob Hyndman [aut, cre, cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between forecast versions 7.1 dated 2016-04-14 and 7.2 dated 2016-09-09
forecast-7.1/forecast/man/rw.f.Rd |only forecast-7.2/forecast/ChangeLog | 15 forecast-7.2/forecast/DESCRIPTION | 6 forecast-7.2/forecast/MD5 | 106 ++- forecast-7.2/forecast/NAMESPACE | 18 forecast-7.2/forecast/R/DM2.R | 9 forecast-7.2/forecast/R/HoltWintersNew.R | 46 + forecast-7.2/forecast/R/acf.R | 9 forecast-7.2/forecast/R/arfima.R | 4 forecast-7.2/forecast/R/arima.R | 164 +++-- forecast-7.2/forecast/R/bats.R | 9 forecast-7.2/forecast/R/errors.R | 35 - forecast-7.2/forecast/R/ets.R | 38 - forecast-7.2/forecast/R/etsforecast.R | 56 + forecast-7.2/forecast/R/forecast.R | 76 ++ forecast-7.2/forecast/R/forecast2.R | 508 ++++++------------ forecast-7.2/forecast/R/forecastTBATS.R | 5 forecast-7.2/forecast/R/ggplot.R | 238 +++++++- forecast-7.2/forecast/R/lm.R | 81 +- forecast-7.2/forecast/R/mforecast.R | 10 forecast-7.2/forecast/R/msts.R | 16 forecast-7.2/forecast/R/naive.R |only forecast-7.2/forecast/R/newarima2.R | 118 ++-- forecast-7.2/forecast/R/nnetar.R | 23 forecast-7.2/forecast/R/seasadj.R |only forecast-7.2/forecast/R/season.R | 51 - forecast-7.2/forecast/R/simulate.R | 45 - forecast-7.2/forecast/R/spline.R | 4 forecast-7.2/forecast/R/tbats.R | 9 forecast-7.2/forecast/R/theta.R |only forecast-7.2/forecast/man/arfima.Rd | 5 forecast-7.2/forecast/man/arima.Rd | 28 forecast-7.2/forecast/man/auto.arima.Rd | 16 forecast-7.2/forecast/man/autoplot.ts.Rd | 4 forecast-7.2/forecast/man/croston.Rd | 13 forecast-7.2/forecast/man/diebold.mariano.test.Rd | 8 forecast-7.2/forecast/man/ets.Rd | 2 forecast-7.2/forecast/man/fitted.Arima.Rd | 15 forecast-7.2/forecast/man/fitted.bats.Rd |only forecast-7.2/forecast/man/fitted.ets.Rd |only forecast-7.2/forecast/man/fitted.nnetar.Rd |only forecast-7.2/forecast/man/fitted.tbats.Rd |only forecast-7.2/forecast/man/forecast.stl.Rd | 13 forecast-7.2/forecast/man/forecastplot.Rd | 8 forecast-7.2/forecast/man/geom_forecast.Rd | 1 forecast-7.2/forecast/man/gglagplot.Rd |only forecast-7.2/forecast/man/meanf.Rd | 7 forecast-7.2/forecast/man/msts.Rd | 2 forecast-7.2/forecast/man/naive.Rd | 33 - forecast-7.2/forecast/man/nnetar.Rd | 15 forecast-7.2/forecast/man/seas.adj.Rd | 3 forecast-7.2/forecast/man/seasonplot.Rd | 8 forecast-7.2/forecast/man/ses.Rd | 24 forecast-7.2/forecast/man/spline.f.Rd | 7 forecast-7.2/forecast/man/theta.Rd | 13 forecast-7.2/forecast/man/ts.display.Rd | 6 forecast-7.2/forecast/tests/testthat/test-hfitted.R |only forecast-7.2/forecast/tests/testthat/test-mforecast.R | 3 forecast-7.2/forecast/tests/testthat/test-tslm.R | 3 59 files changed, 1099 insertions(+), 837 deletions(-)
Title: A Flexible Modelling Environment for Inverse Modelling,
Sensitivity, Identifiability and Monte Carlo Analysis
Description: Provides functions to help in fitting models to data, to
perform Monte Carlo, sensitivity and identifiability analysis. It is
intended to work with models be written as a set of differential
equations that are solved either by an integration routine from
package 'deSolve', or a steady-state solver from package
'rootSolve'. However, the methods can also be used with other types of
functions.
Author: Karline Soetaert <karline.soetaert@nioz.nl>,
Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between FME versions 1.3.2 dated 2014-11-03 and 1.3.5 dated 2016-09-09
DESCRIPTION | 18 MD5 | 22 - NAMESPACE | 101 +++-- R/modFit.R | 691 +++++++++++++++++++------------------ R/sensFun.R | 2 build/vignette.rds |binary inst/CITATION | 2 inst/doc/examples/Logist.R | 163 ++++---- man/FME.Rd | 14 man/modCost.Rd | 659 +++++++++++++++++------------------ man/modFit.Rd | 837 ++++++++++++++++++++++----------------------- vignettes/vignettes.bib | 1 12 files changed, 1283 insertions(+), 1227 deletions(-)
Title: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and
K-Medoids Clustering
Description: Gaussian mixture models, k-means, mini-batch-kmeans and k-medoids
clustering with the option to plot, validate, predict (new data) and estimate the
optimal number of clusters. The package takes advantage of 'RcppArmadillo' to
speed up the computationally intensive parts of the functions.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between ClusterR versions 1.0.0 dated 2016-09-06 and 1.0.1 dated 2016-09-09
DESCRIPTION | 8 - MD5 | 29 ++-- R/clustering_functions.R | 183 +++++++++++++++++++++-------- inst/doc/the_clusterR_package.R | 116 ++++++++++-------- inst/doc/the_clusterR_package.Rmd | 42 ++++-- inst/doc/the_clusterR_package.html | 66 +++------- man/GMM.Rd | 2 man/KMeans_arma.Rd | 2 man/Optimal_Clusters_GMM.Rd | 2 man/predict_GMM.Rd | 2 man/predict_KMeans.Rd | 4 man/tryCatch_GMM.Rd |only man/tryCatch_KMEANS_arma.Rd |only man/tryCatch_optimal_clust_GMM.Rd |only src/kmeans_miniBatchKmeans_GMM_Medoids.cpp | 28 ++-- tests/testthat/test-gmm.R | 157 +++++++++++++++++------- vignettes/the_clusterR_package.Rmd | 42 ++++-- 17 files changed, 427 insertions(+), 256 deletions(-)