Thu, 15 Sep 2016

Package Tides updated to version 1.2 with previous version 1.1 dated 2015-02-04

Title: Quasi-Periodic Time Series Characteristics
Description: Calculate Characteristics of Quasi-Periodic Time Series, e.g. Estuarine Water Levels.
Author: Tom Cox <tom.cox@uantwerp.be>
Maintainer: Tom Cox <tom.cox@uantwerp.be>

Diff between Tides versions 1.1 dated 2015-02-04 and 1.2 dated 2016-09-15

 ChangeLog          |    2 ++
 DESCRIPTION        |   10 +++++-----
 MD5                |   19 +++++++++++--------
 NAMESPACE          |    3 ++-
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 12 files changed, 57 insertions(+), 38 deletions(-)

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New package qrencoder with initial version 0.1.0
Package: qrencoder
Title: Quick Response Code (QR Code) / Matrix Barcode Creator
Version: 0.1.0
Authors@R: c( person("Bob", "Rudis", email = "bob@rud.is", role = c("aut", "cre")), person("Kentaro", "Fukuchi", role=("ctb"), comment="libqrencoder") )
Maintainer: Bob Rudis <bob@rud.is>
Description: Quick Response codes (QR codes) are a type of matrix bar code and can be used to authenticate transactions, provide access to multi-factor authentication services and enable general data transfer in an image. QR codes use four standardized encoding modes (numeric, alphanumeric, byte/binary, and kanji) to efficiently store data. Matrix barcode generation is performed efficiently in C via the included 'libqrencoder' library created by Kentaro Fukuchi.
Depends: R (>= 3.1.0), raster
License: GPL-2
LazyData: true
Suggests: testthat
LinkingTo: Rcpp
Imports: Rcpp, base64enc, png
URL: http://github.com/hrbrmstr/qrencoder
BugReports: https://github.com/hrbrmstr/qrencoder/issues
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-09-15 22:05:22 UTC; bob
Author: Bob Rudis [aut, cre], Kentaro Fukuchi [ctb] (libqrencoder)
Repository: CRAN
Date/Publication: 2016-09-16 01:50:10

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Package mmod updated to version 1.3.2 with previous version 1.3.1 dated 2015-08-27

Title: Modern Measures of Population Differentiation
Description: Provides functions for measuring population divergence from genotypic data.
Author: David Winter [aut, cre], Peter Green [ctb], Zhian Kamvar [ctb], Thierry Gosselin [ctb]
Maintainer: David Winter <david.winter@gmail.com>

Diff between mmod versions 1.3.1 dated 2015-08-27 and 1.3.2 dated 2016-09-15

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Package forcats updated to version 0.1.1 with previous version 0.1.0 dated 2016-08-29

Title: Tools for Working with Categorical Variables (Factors)
Description: Helpers for reordering factor levels (including moving specified levels to front, ordering by first appearance, reversing, and randomly shuffling), and tools for modifying factor levels (including collapsing rare levels into other, 'anonymising', and manually 'recoding').
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between forcats versions 0.1.0 dated 2016-08-29 and 0.1.1 dated 2016-09-15

 DESCRIPTION                    |   11 +++--
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 README.md                      |   80 ++++++++++++++++++++++++++++++-----------
 tests/testthat/test-fct_lump.R |    7 ++-
 5 files changed, 74 insertions(+), 31 deletions(-)

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New package BalanceCheck with initial version 0.1
Package: BalanceCheck
Version: 0.1
Date: 2016-9-11
Title: Balance Check for Multiple Covariates in Matched Observational Studies
Author: Hao Chen and Dylan Small
Maintainer: Hao Chen <hxchen@ucdavis.edu>
Depends: R (>= 3.0.1)
Description: Two practical tests are provided for assessing whether multiple covariates in a treatment group and a matched control group are balanced in observational studies.
License: GPL (>= 2)
Imports: ade4, mvtnorm
NeedsCompilation: no
Packaged: 2016-09-15 22:39:39 UTC; haochen
Repository: CRAN
Date/Publication: 2016-09-16 01:52:52

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Package tuneR updated to version 1.3.0 with previous version 1.2.1 dated 2014-04-07

Title: Analysis of Music and Speech
Description: Analyze music and speech, extract features like MFCCs, handle wave files and their representation in various ways, read mp3, read midi, perform steps of a transcription, ... Also contains functions ported from the 'rastamat' 'Matlab' package.
Author: Uwe Ligges <ligges@statistik.tu-dortmund.de> with contributions from Sebastian Krey, Olaf Mersmann, Sarah Schnackenberg, Guillaume Guenard, Andrea Preusser, Anita Thieler, Johanna Mielke and Claus Weihs, as well as code fragments and ideas from the former package 'sound' by Matthias Heymann and functions from 'rastamat' by Daniel P. W. Ellis. The included parts of the libmad MPEG audio decoder library are authored by Underbit Technologies.
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>

Diff between tuneR versions 1.2.1 dated 2014-04-07 and 1.3.0 dated 2016-09-15

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Package SIDES updated to version 1.5 with previous version 1.4 dated 2016-08-16

Title: Subgroup Identification Based on Differential Effect Search
Description: Provides function to apply "Subgroup Identification based on Differential Effect Search" (SIDES) method proposed by Lipkovich et al. (2011) <doi:10.1002/sim.4289>.
Author: Marie-Karelle Riviere
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>

Diff between SIDES versions 1.4 dated 2016-08-16 and 1.5 dated 2016-09-15

 DESCRIPTION             |   13 ++--
 MD5                     |   10 +--
 NAMESPACE               |    3 
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 man/SIDES-package.Rd    |    4 -
 man/simulation_SIDES.Rd |  153 ++++++++++++++++++++++++------------------------
 6 files changed, 105 insertions(+), 105 deletions(-)

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New package rFTRLProximal with initial version 1.0.0
Package: rFTRLProximal
Type: Package
Title: FTRL-Proximal Algorithm
Version: 1.0.0
Author: Author: Yachen Yan [aut, cre]
Description: An efficient C++ based implementation of "Follow The (Proximally) Regularized Leader" online learning algorithm. This algorithm was proposed in McMahan et al. (2013) <DOI:10.1145/2487575.2488200>.
URL: http://github.com/yanyachen/rFTRLProximal
BugReports: http://github.com/yanyachen/rFTRLProximal/issues
Depends: R (>= 2.10)
Imports: stats, utils, data.table (>= 1.9.6), Matrix, FeatureHashing, magrittr, foreach, Rcpp, RcppProgress
Suggests: rBayesianOptimization, MLmetrics
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
License: GPL-2
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Maintainer: Yachen Yan <yanyachen21@gmail.com>
Packaged: 2016-09-15 16:28:48 UTC; Administrator
Repository: CRAN
Date/Publication: 2016-09-15 21:57:16

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Package pcaPA updated to version 2.0.1 with previous version 2.0 dated 2016-09-14

Title: Parallel Analysis for Ordinal and Numeric Data using Polychoric and Pearson Correlations with S3 Classes
Description: A set of functions to perform parallel analysis for principal components analysis intended mainly for large data sets. It performs a parallel analysis of continuous, ordered (including dichotomous/binary as a special case) or mixed type of data associated with a principal components analysis. Polychoric correlations among ordered variables, Pearson correlations among continuous variables and polyserial correlation between mixed type variables (one ordered and one continuous) are used. Whenever the use of polyserial or polychoric correlations yields a non positive definite correlation matrix, the resulting matrix is transformed into the nearest positive definite matrix. This is a continued work based on a previous version developed at the Colombian Institute for the evaluation of education - ICFES.
Author: Carlos A. Arias <caariasr22@gmail.com> and Victor H. Cervantes <Herulor@gmail.com>.
Maintainer: Carlos A. Arias <caariasr22@gmail.com>

Diff between pcaPA versions 2.0 dated 2016-09-14 and 2.0.1 dated 2016-09-15

 DESCRIPTION         |    8 ++++----
 MD5                 |    4 ++--
 src/Cpolychoric.cpp |    5 +++++
 3 files changed, 11 insertions(+), 6 deletions(-)

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Package ctv updated to version 0.8-2 with previous version 0.8-1 dated 2015-01-10

Title: CRAN Task Views
Description: Infrastructure for task views to CRAN-style repositories: Querying task views and installing the associated packages (client-side tools), generating HTML pages and storing task view information in the repository (server-side tools).
Author: Achim Zeileis [aut, cre], Kurt Hornik [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>

Diff between ctv versions 0.8-1 dated 2015-01-10 and 0.8-2 dated 2016-09-15

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 inst/ctv/Multivariate.ctv              |   21 
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New package PEGroupTesting with initial version 1.0
Package: PEGroupTesting
Type: Package
Title: Population Proportion Estimation using Group Testing
Version: 1.0
Depends: R (>= 3.1.0)
Imports: stats
Date: 2016-09-12
Author: Qingyang Zhang, Yanchuan Li
Maintainer: Qingyang Zhang <qz008@uark.edu>
Description: The population proportion using group testing can be estimated by different methods. Four functions including p.mle(), p.gart(), p.burrow() and p.order() are provided to implement four estimating methods including the maximum likelihood estimate, Gart's estimate, Burrow's estimate, and order statistic estimate.
License: GPL-2
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2016-09-15 14:19:19 UTC; qingyangzhang
Repository: CRAN
Date/Publication: 2016-09-15 17:49:30

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Package hit updated to version 0.3.1 with previous version 0.3.0 dated 2016-08-29

Title: Hierarchical Inference Testing
Description: Hierarchical inference testing (HIT) for (generalized) linear models with correlated covariates applicable to high-dimensional settings.
Author: Jonas Klasen [aut, cre]
Maintainer: Jonas Klasen <qtcat@gmx.de>

Diff between hit versions 0.3.0 dated 2016-08-29 and 0.3.1 dated 2016-09-15

 DESCRIPTION              |    9 ++++-----
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 NEWS.md                  |   12 ++++++++++--
 R/anova.R                |    4 ++--
 R/hierarchy.R            |   22 +++++++++++-----------
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New package MetaboQC with initial version 1.0
Package: MetaboQC
Type: Package
Title: Normalize Metabolomic Data using QC Signal
Version: 1.0
Date: 2016-09-15
Author: Monica Calderon-Santiago
Maintainer: Monica Calderon-Santiago <b42casam@uco.es>
Description: Takes QC signal for each day and normalize metabolomic data that has been acquired in a certain period of time. At least three QC per day are required.
License: GPL-2
Depends: R (>= 3.1.3)
Imports: plyr
RoxygenNote: 5.0.1
Packaged: 2016-09-15 14:07:32 UTC; M<c3><b3>nica
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-09-15 17:49:28

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Package DiceOptim updated to version 2.0 with previous version 1.5 dated 2015-03-10

Title: Kriging-Based Optimization for Computer Experiments
Description: Efficient Global Optimization (EGO) algorithm and adaptations for parallel infill (multipoint EI), problems with noise, and problems with constraints.
Author: V. Picheny, D. Ginsbourger, O. Roustant, with contributions by M. Binois, C. Chevalier, S. Marmin, and T. Wagner
Maintainer: V. Picheny <victor.picheny@toulouse.inra.fr>

Diff between DiceOptim versions 1.5 dated 2015-03-10 and 2.0 dated 2016-09-15

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Package TreeBUGS updated to version 0.6.3 with previous version 0.6.1 dated 2016-09-02

Title: Hierarchical Multinomial Processing Tree Modeling
Description: User-friendly analysis of hierarchical multinomial processing tree (MPT) models that are often used in cognitive psychology. Implements the latent-trait MPT approach (Klauer, 2010) <DOI:10.1007/s11336-009-9141-0> and the beta-MPT approach (Smith & Batchelder, 2010) <DOI:10.1016/j.jmp.2009.06.007> to model heterogeneity of participants. MPT models are conveniently specified by an .eqn-file as used by other MPT software and data are provided by a .csv-file or directly in R. Models are either fitted by calling JAGS or by an MPT-tailored Gibbs sampler in C++ (only for nonhierarchical and beta MPT models). Provides tests of heterogeneity and MPT-tailored summaries and plotting functions.
Author: Daniel Heck [aut, cre], Nina Arnold [aut, dtc], Denis Arnold [aut]
Maintainer: Daniel Heck <heck@uni-mannheim.de>

Diff between TreeBUGS versions 0.6.1 dated 2016-09-02 and 0.6.3 dated 2016-09-15

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Package spectral updated to version 1.0.1 with previous version 1.0 dated 2016-09-13

Title: Common Methods of Spectral Data Analysis
Description: Fourier and Hilbert transforms are utilized to perform several types of spectral analysis on the supplied data. Also fragmented and irregularly spaced data can be processed. A user friendly interface helps to interpret the results.
Author: Martin Seilmayer
Maintainer: Martin Seilmayer <m.seilmayer@hzdr.de>

Diff between spectral versions 1.0 dated 2016-09-13 and 1.0.1 dated 2016-09-15

 DESCRIPTION              |    6 ++---
 MD5                      |    6 ++---
 R/examples/lombExample.R |   52 +++++++++++++++++++++++------------------------
 src/lmb.cpp              |   34 +++++++++++++++---------------
 4 files changed, 49 insertions(+), 49 deletions(-)

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New package sonar with initial version 1.0.2
Package: sonar
Type: Package
Title: Fundamental Formulas for Sonar
Version: 1.0.2
Encoding: UTF-8
Authors@R: c(person(given = "Jose", family = "Gama", role = c("aut","cre"),email = "rxprtgama@gmail.com") )
Description: Formulas for calculating sound velocity, water pressure, depth, density, absorption and sonar equations.
License: GPL (>= 3)
Depends: R (>= 2.7.0)
Packaged: 2016-09-15 12:23:40 UTC; mk
Author: Jose Gama [aut, cre]
Maintainer: Jose Gama <rxprtgama@gmail.com>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-09-15 15:46:37

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Package RStata updated to version 1.1.0 with previous version 1.0.0 dated 2015-12-07

Title: A Bit of Glue Between R and Stata
Description: A simple R -> Stata interface allowing the user to execute Stata commands (both inline and from a .do file) from R.
Author: Luca Braglia [aut, cre]
Maintainer: Luca Braglia <lbraglia@gmail.com>

Diff between RStata versions 1.0.0 dated 2015-12-07 and 1.1.0 dated 2016-09-15

 DESCRIPTION        |    6 +++---
 MD5                |   12 ++++++------
 NEWS               |    8 ++++++++
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 7 files changed, 42 insertions(+), 53 deletions(-)

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New package r2glmm with initial version 0.1.0
Package: r2glmm
Type: Package
Title: Computes R Squared for Mixed (Multilevel) Models
Date: 2016-09-14
Version: 0.1.0
Authors@R: person("Byron", "Jaeger", email = "byron.jaeger@gmail.com", role = c("aut", "cre"))
Description: The model R squared and semi-partial R squared for the linear and generalized linear mixed model (LMM and GLMM) are computed with confidence limits. The R squared measure from Edwards et.al (2008) <DOI:10.1002/sim.3429> is extended to the GLMM using penalized quasi-likelihood (PQL) estimation (see Jaeger et al. 2016 <DOI:10.1080/02664763.2016.1193725>). Three methods of computation are provided and described as follows. Firstly, The Kenward-Roger approach. Due to some inconsistency between the 'pbkrtest' package and the 'glmmPQL' function, the Kenward-Roger approach in the 'r2glmm' package is limited to the LMM. Secondly, The method introduced by Nakagawa and Schielzeth (2013) <DOI:10.1111/j.2041-210x.2012.00261.x> and later extended by Johnson (2014) <DOI:10.1111/2041-210X.12225>. The 'r2glmm' package only computes marginal R squared for the LMM and does not generalize the statistic to the GLMM; however, confidence limits and semi-partial R squared for fixed effects are useful additions. Lastly, an approach using standardized generalized variance (SGV) can be used for covariance model selection. Package installation instructions can be found in the readme file.
Imports: mgcv, lmerTest, Matrix, pbkrtest, ggplot2, afex, stats, MASS, dplyr
Suggests: lme4, nlme, testthat
License: GPL-2
LazyData: TRUE
RoxygenNote: 5.0.1
URL: https://github.com/bcjaeger/r2glmm
BugReports: https://github.com/bcjaeger/r2glmm/issues
NeedsCompilation: no
Packaged: 2016-09-15 13:38:35 UTC; Byron
Author: Byron Jaeger [aut, cre]
Maintainer: Byron Jaeger <byron.jaeger@gmail.com>
Repository: CRAN
Date/Publication: 2016-09-15 16:16:53

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New package hkclustering with initial version 1.0
Package: hkclustering
Type: Package
Title: Ensemble Clustering using K Means and Hierarchical Clustering
Version: 1.0
Date: 2016-09-02
Author: Kaloyan Stoyanov <kaloyans@profusion.com>
Maintainer: Rolando Medellin <rolandom@profusion.com>
Description: Implements an ensemble algorithm for clustering combining a k-means and a hierarchical clustering approach.
Imports: cluster
License: GPL-2
Packaged: 2016-09-15 08:52:01 UTC; RolandoM
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-09-15 15:46:35

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New package GRS.test with initial version 1.0
Package: GRS.test
Type: Package
Title: GRS Test for Portfolio Efficiency and Its Statistical Power Analysis
Version: 1.0
Date: 2016-09-11
Author: Jae H. Kim
Maintainer: Jae H. Kim <J.Kim@latrobe.edu.au>
Description: Computational resources for test proposed by Gibbons, Ross, Shanken (1989)<DOI:10.2307/1913625>.
License: GPL-2
NeedsCompilation: no
Packaged: 2016-09-15 13:58:07 UTC; JKim
Repository: CRAN
Date/Publication: 2016-09-15 16:16:51

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New package DRR with initial version 0.0.2
Package: DRR
Title: Dimensionality Reduction via Regression
Version: 0.0.2
Authors@R: person("Guido", "Kraemer", email = "gkraemer@bgc-jena.mpg.de", role = c("aut","cre"))
Description: An Implementation of Dimensionality Reduction via Regression using Kernel Ridge Regression.
License: GPL-3
Imports: stats, methods
Suggests: knitr
VignetteBuilder: knitr
LazyData: true
Depends: kernlab, CVST, Matrix
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-15 09:54:12 UTC; gkraemer
Author: Guido Kraemer [aut, cre]
Maintainer: Guido Kraemer <gkraemer@bgc-jena.mpg.de>
Repository: CRAN
Date/Publication: 2016-09-15 15:46:27

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Package aws updated to version 1.9-6 with previous version 1.9-4 dated 2014-03-05

Title: Adaptive Weights Smoothing
Description: Collection of R-functions implementing the Propagation-Separation Approach to adaptive smoothing as described in "J. Polzehl and V. Spokoiny (2006) <DOI:10.1007/s00440-005-0464-1>" and "J. Polzehl and V. Spokoiny (2004) <DOI:10.20347/WIAS.PREPRINT.998>".
Author: Joerg Polzehl [aut, cre], Felix Anker [ctb]
Maintainer: Joerg Polzehl <joerg.polzehl@wias-berlin.de>

Diff between aws versions 1.9-4 dated 2014-03-05 and 1.9-6 dated 2016-09-15

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Package anytime updated to version 0.0.2 with previous version 0.0.1 dated 2016-09-13

Title: Anything to 'POSIXct' or 'Date' Converter
Description: Convert input in any one of character, integer, numeric, factor, or type into 'POSIXct' (or 'Date') objects, using one of a number of predefined formats, and relying on Boost facilities for date and time parsing.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between anytime versions 0.0.1 dated 2016-09-13 and 0.0.2 dated 2016-09-15

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Package fmri updated to version 1.7-2 with previous version 1.5-1 dated 2014-06-18

Title: Analysis of fMRI Experiments
Description: Contains R-functions to perform an fMRI analysis as described in Tabelow et al. (2006) <DOI:10.1016/j.neuroimage.2006.06.029>, Polzehl et al. (2010) <DOI:10.1016/j.neuroimage.2010.04.241>, Tabelow and Polzehl (2011) <DOI:10.18637/jss.v044.i11>.
Author: Karsten Tabelow [aut, cre], Joerg Polzehl [aut], Brandon Whitcher [ctb], Dames Sibylle [ctb]
Maintainer: Karsten Tabelow <tabelow@wias-berlin.de>

Diff between fmri versions 1.5-1 dated 2014-06-18 and 1.7-2 dated 2016-09-15

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 32 files changed, 2112 insertions(+), 1578 deletions(-)

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Package aSPU updated to version 1.43 with previous version 1.42 dated 2016-05-03

Title: Adaptive Sum of Powered Score Test
Description: R codes for the (adaptive) Sum of Powered Score ('SPU' and 'aSPU') tests, inverse variance weighted Sum of Powered score ('SPUw' and 'aSPUw') tests and gene-based and some pathway based association tests (Pathway based Sum of Powered Score tests ('SPUpath'), adaptive 'SPUpath' ('aSPUpath') test, 'GEEaSPU' test for multiple traits - single 'SNP' (single-nucleotide-polymorphism) association in generalized estimation equations, 'MTaSPUs' test for multiple traits - single 'SNP' association with Genome Wide Association Studies ('GWAS') summary statistics, Gene-based Association Test that uses an extended Simes procedure ('GATES'), Hybrid Set-based Test ('HYST') and extended version of 'GATES' test for pathway-based association testing ('GATES-Simes'). ). The tests can be used with genetic and other data sets with covariates. The response variable is binary or quantitative. Summary; (1) Single trait-'SNP' set association with individual-level data ('aSPU', 'aSPUw', 'aSPUr'), (2) Single trait-'SNP' set association with summary statistics ('aSPUs'), (3) Single trait-pathway association with individual-level data ('aSPUpath'), (4) Single trait-pathway association with summary statistics ('aSPUsPath'), (5) Multiple traits-single 'SNP' association with individual-level data ('GEEaSPU'), (6) Multiple traits- single SNP association with summary statistics ('MTaSPUs'), (7) Multiple traits-`SNP' set association with summary statistics(`MTaSPUsSet'), (8) Multiple traits-pathway association with summary statistics(`MTaSPUsSetPath').
Author: Il-Youp Kwak and others (See Author(s) in each function manual)
Maintainer: Il-Youp Kwak <ikwak@umn.edu>

Diff between aSPU versions 1.42 dated 2016-05-03 and 1.43 dated 2016-09-15

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Package adimpro updated to version 0.8.2 with previous version 0.7.8 dated 2012-11-13

Title: Adaptive Smoothing of Digital Images
Description: Implements tools for manipulation of digital images and the Propagation Separation approach by Polzehl and Spokoiny (2006) <DOI:10.1007/s00440-005-0464-1> for smoothing digital images, see Polzehl and Tabelow (2007) <DOI:10.18637/jss.v019.i01>.
Author: Karsten Tabelow <tabelow@wias-berlin.de>, Joerg Polzehl <polzehl@wias-berlin.de>
Maintainer: Karsten Tabelow <tabelow@wias-berlin.de>

Diff between adimpro versions 0.7.8 dated 2012-11-13 and 0.8.2 dated 2016-09-15

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 31 files changed, 1148 insertions(+), 623 deletions(-)

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Package jug updated to version 0.1.4 with previous version 0.1.3 dated 2016-07-28

Title: A Simple Web Framework for R
Description: A set of functions to ease the building of web APIs.
Author: Bart Smeets [aut, cre]
Maintainer: Bart Smeets <bartsmeets86@gmail.com>

Diff between jug versions 0.1.3 dated 2016-07-28 and 0.1.4 dated 2016-09-15

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Package enpls updated to version 4.5 with previous version 4.0 dated 2016-08-29

Title: Ensemble Partial Least Squares Regression
Description: An algorithmic framework for measuring feature importance, outlier detection, and ensemble modeling based on (sparse) partial least squares regressions.
Author: Nan Xiao <me@nanx.me>, Dong-Sheng Cao <oriental-cds@163.com>, Miao-Zhu Li <miaozhu.li@duke.edu>, Qing-Song Xu <qsxu@csu.edu.cn>
Maintainer: Nan Xiao <me@nanx.me>

Diff between enpls versions 4.0 dated 2016-08-29 and 4.5 dated 2016-09-15

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Package BAT updated to version 1.5.4 with previous version 1.5.3 dated 2016-08-13

Title: Biodiversity Assessment Tools
Description: Includes algorithms to assess alpha and beta diversity in all their dimensions (taxon, phylogenetic and functional diversity), whether communities are completely sampled or not. It allows performing a number of analyses based on either species identities or phylogenetic/functional trees depicting species relationships.
Author: Pedro Cardoso, Francois Rigal, Jose Carlos Carvalho
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>

Diff between BAT versions 1.5.3 dated 2016-08-13 and 1.5.4 dated 2016-09-15

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New package profmem with initial version 0.4.0
Package: profmem
Version: 0.4.0
Title: Simple Memory Profiling for R
Imports: utils
Suggests: R.rsp, markdown, microbenchmark
VignetteBuilder: R.rsp
Authors@R: c(person("Henrik", "Bengtsson", role=c("aut", "cre", "cph"), email = "henrikb@braju.com"))
Description: A simple and light-weight API for memory profiling of R expressions. The profiling is built on top of R's built-in memory profiler ('utils::Rprofmem()'), which records every memory allocation done by R (also native code).
License: LGPL (>= 2.1)
LazyLoad: TRUE
URL: https://github.com/HenrikBengtsson/profmem
BugReports: https://github.com/HenrikBengtsson/profmem/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-15 05:23:47 UTC; hb
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Repository: CRAN
Date/Publication: 2016-09-15 08:14:15

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Package lowmemtkmeans updated to version 0.1.1 with previous version 0.1.0 dated 2016-09-07

Title: Low Memory Use Trimmed K-Means
Description: Performs the trimmed k-means clustering algorithm with lower memory use. It also provides a number of utility functions such as BIC calculations.
Author: Andrew Thomas Jones, Hien Duy Nguyen
Maintainer: Andrew Thomas Jones <andrewthomasjones@gmail.com>

Diff between lowmemtkmeans versions 0.1.0 dated 2016-09-07 and 0.1.1 dated 2016-09-15

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Package fdasrvf updated to version 1.7.0 with previous version 1.6.2 dated 2016-08-22

Title: Elastic Functional Data Analysis
Description: Functions to support functional data analysis using the square root velocity framework.
Author: J. Derek Tucker <jdtuck@sandia.gov>
Maintainer: J. Derek Tucker <jdtuck@sandia.gov>

Diff between fdasrvf versions 1.6.2 dated 2016-08-22 and 1.7.0 dated 2016-09-15

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