Title: Phase I Control Charts (with Emphasis on Distribution-Free
Methods)
Description: Statistical methods for retrospectively detecting changes in location and/or dispersion of univariate and multivariate variables. Data can be individual (one observation at each instant of time) or subgrouped (more than one observation at each instant of time). Control limits are computed, often using a permutation approach, so that a prescribed false alarm probability is guaranteed without making any parametric assumptions on the stable (in-control) distribution.
Author: Giovanna Capizzi and Guido Masarotto
Maintainer: Giovanna Capizzi <giovanna.capizzi@unipd.it>
Diff between dfphase1 versions 1.0 dated 2016-09-22 and 1.0.1 dated 2016-09-25
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/rsp.R | 2 +- build/partial.rdb |binary man/colonscopy.Rd | 2 +- man/mshewhart.Rd | 8 ++++---- src/multi.cpp | 50 +++++++++++++++++++++++++------------------------- src/shewhart.cpp | 6 +++--- 8 files changed, 44 insertions(+), 44 deletions(-)
Title: Write Data Frames to Xls Files
Description: Writes data frames to xls files. It supports
multiple sheets and basic formatting.
Author: Guido van Steen
Maintainer: Guido van Steen <vansteen@users.sourceforge.net>
Diff between dataframes2xls versions 0.4.6 dated 2014-11-25 and 0.4.7 dated 2016-09-25
DESCRIPTION | 14 +++++++------- LICENSE | 6 +++--- MD5 | 6 +++--- NAMESPACE | 2 +- 4 files changed, 14 insertions(+), 14 deletions(-)
More information about dataframes2xls at CRAN
Permanent link
Title: Optimal and Fast Univariate k-Means Clustering
Description: A dynamic programming algorithm for optimal one-dimensional
k-means clustering. The algorithm minimizes the sum of squares of
within-cluster distances. As an alternative to heuristic k-means algorithms,
this method guarantees optimality and reproducibility. Its advantage in
efficiency and accuracy over k-means is increasingly pronounced as the
number of clusters k increases.
Author: Joe Song [aut, cre], Haizhou Wang [aut]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between Ckmeans.1d.dp versions 3.4.6-1 dated 2016-08-30 and 3.4.6-2 dated 2016-09-25
DESCRIPTION | 20 +++++++++++++++----- MD5 | 13 +++++++------ NAMESPACE | 1 + NEWS | 6 ++++++ R/Ckmeans.1d.dp.R | 20 ++++++++++++++++++++ man/Ckmeans.1d.dp-package.Rd | 10 ++++------ man/Ckmeans.1d.dp.Rd | 18 +++++++++++------- man/ahist.Rd |only 8 files changed, 64 insertions(+), 24 deletions(-)
Title: Data Transformation and Labelled Data Utility Functions
Description: Collection of miscellaneous utility functions (especially intended
for people coming from other statistical software packages like 'SPSS', and/
or who are new to R), supporting following common tasks when working with
data : 1) Reading and writing data between R and other statistical software
packages like 'SPSS', 'SAS' or 'Stata' and working with labelled data; this
includes easy ways to get and set label attributes, to convert labelled
vectors into factors (and vice versa), or to deal with multiple declared
missing values etc. 2) Data transformation tasks like recoding,
dichotomizing or grouping variables, setting and replacing missing values.
The data transformation functions also support labelled data.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjmisc versions 1.8 dated 2016-05-19 and 2.0.0 dated 2016-09-25
sjmisc-1.8/sjmisc/R/converge_ok.R |only sjmisc-1.8/sjmisc/R/cramer.R |only sjmisc-1.8/sjmisc/R/cronb.R |only sjmisc-1.8/sjmisc/R/cv.R |only sjmisc-1.8/sjmisc/R/eta_sq.R |only sjmisc-1.8/sjmisc/R/get_na_flags.R |only sjmisc-1.8/sjmisc/R/gof.R |only sjmisc-1.8/sjmisc/R/icc.R |only sjmisc-1.8/sjmisc/R/labelled.R |only sjmisc-1.8/sjmisc/R/mean_n.R |only sjmisc-1.8/sjmisc/R/mic.R |only sjmisc-1.8/sjmisc/R/mwu.R |only sjmisc-1.8/sjmisc/R/overdisp.R |only sjmisc-1.8/sjmisc/R/phi.R |only sjmisc-1.8/sjmisc/R/pseudo_r2.R |only sjmisc-1.8/sjmisc/R/reliab_test.R |only sjmisc-1.8/sjmisc/R/rmse.R |only sjmisc-1.8/sjmisc/R/samplesize_lme.R |only sjmisc-1.8/sjmisc/R/se.R |only sjmisc-1.8/sjmisc/R/sjStatistics.R |only sjmisc-1.8/sjmisc/R/std_b.R |only sjmisc-1.8/sjmisc/R/to_na.R |only sjmisc-1.8/sjmisc/R/weight.R |only sjmisc-1.8/sjmisc/man/chisq_gof.Rd |only sjmisc-1.8/sjmisc/man/cod.Rd |only sjmisc-1.8/sjmisc/man/converge_ok.Rd |only sjmisc-1.8/sjmisc/man/cramer.Rd |only sjmisc-1.8/sjmisc/man/cronb.Rd |only sjmisc-1.8/sjmisc/man/cv.Rd |only sjmisc-1.8/sjmisc/man/deff.Rd |only sjmisc-1.8/sjmisc/man/eta_sq.Rd |only sjmisc-1.8/sjmisc/man/get_frq.Rd |only sjmisc-1.8/sjmisc/man/get_na_flags.Rd |only sjmisc-1.8/sjmisc/man/get_re_var.Rd |only sjmisc-1.8/sjmisc/man/hoslem_gof.Rd |only sjmisc-1.8/sjmisc/man/icc.Rd |only sjmisc-1.8/sjmisc/man/labelled.Rd |only sjmisc-1.8/sjmisc/man/levene_test.Rd |only sjmisc-1.8/sjmisc/man/mean_n.Rd |only sjmisc-1.8/sjmisc/man/mic.Rd |only sjmisc-1.8/sjmisc/man/mwu.Rd |only sjmisc-1.8/sjmisc/man/overdisp.Rd |only sjmisc-1.8/sjmisc/man/phi.Rd |only sjmisc-1.8/sjmisc/man/r2.Rd |only sjmisc-1.8/sjmisc/man/re_var.Rd |only sjmisc-1.8/sjmisc/man/reliab_test.Rd |only sjmisc-1.8/sjmisc/man/rmse.Rd |only sjmisc-1.8/sjmisc/man/se.Rd |only sjmisc-1.8/sjmisc/man/smpsize_lmm.Rd |only sjmisc-1.8/sjmisc/man/std_beta.Rd |only sjmisc-1.8/sjmisc/man/table_values.Rd |only sjmisc-1.8/sjmisc/man/to_na.Rd |only sjmisc-1.8/sjmisc/man/weight.Rd |only sjmisc-1.8/sjmisc/man/weight2.Rd |only sjmisc-1.8/sjmisc/man/wtd_sd.Rd |only sjmisc-1.8/sjmisc/man/wtd_se.Rd |only sjmisc-2.0.0/sjmisc/DESCRIPTION | 32 +- sjmisc-2.0.0/sjmisc/MD5 | 261 ++++++++----------- sjmisc-2.0.0/sjmisc/NAMESPACE | 198 ++++++++------ sjmisc-2.0.0/sjmisc/NEWS | 362 ++++++++------------------- sjmisc-2.0.0/sjmisc/NEWS.md | 62 ++-- sjmisc-2.0.0/sjmisc/R/S3-methods.R | 231 ++--------------- sjmisc-2.0.0/sjmisc/R/add_labels.R | 281 ++++++++++++-------- sjmisc-2.0.0/sjmisc/R/as_labelled.R | 57 +--- sjmisc-2.0.0/sjmisc/R/big_mark.R |only sjmisc-2.0.0/sjmisc/R/copy_labels.R | 146 +++++----- sjmisc-2.0.0/sjmisc/R/dicho.R | 99 +++---- sjmisc-2.0.0/sjmisc/R/drop_labels.R | 139 +++++----- sjmisc-2.0.0/sjmisc/R/fill_labels.R | 69 ++--- sjmisc-2.0.0/sjmisc/R/frq.R | 276 +++++++++----------- sjmisc-2.0.0/sjmisc/R/get_label.R | 51 ++- sjmisc-2.0.0/sjmisc/R/get_labels.R | 100 ++++--- sjmisc-2.0.0/sjmisc/R/get_na.R | 121 +++++---- sjmisc-2.0.0/sjmisc/R/get_note.R | 18 - sjmisc-2.0.0/sjmisc/R/get_values.R | 50 ++- sjmisc-2.0.0/sjmisc/R/group_str.R | 43 --- sjmisc-2.0.0/sjmisc/R/group_var.R | 113 +++++--- sjmisc-2.0.0/sjmisc/R/helpfunctions.R | 53 +++ sjmisc-2.0.0/sjmisc/R/is_empty.R | 172 ++++++++---- sjmisc-2.0.0/sjmisc/R/is_even.R | 24 + sjmisc-2.0.0/sjmisc/R/is_labelled.R | 25 - sjmisc-2.0.0/sjmisc/R/is_odd.R | 23 + sjmisc-2.0.0/sjmisc/R/merge_df.R | 24 - sjmisc-2.0.0/sjmisc/R/merge_imputations.R |only sjmisc-2.0.0/sjmisc/R/prop_table.R |only sjmisc-2.0.0/sjmisc/R/read_write.R | 338 +++++++++++++------------ sjmisc-2.0.0/sjmisc/R/rec.R | 258 ++++++------------- sjmisc-2.0.0/sjmisc/R/rec_pattern.R | 122 ++++----- sjmisc-2.0.0/sjmisc/R/recode_to.R |only sjmisc-2.0.0/sjmisc/R/ref_lvl.R | 185 ++++++------- sjmisc-2.0.0/sjmisc/R/remove_all_labels.R | 27 +- sjmisc-2.0.0/sjmisc/R/remove_labels.R | 216 ++++++++-------- sjmisc-2.0.0/sjmisc/R/replace_na.R | 234 ++++++++++------- sjmisc-2.0.0/sjmisc/R/set_label.R | 9 sjmisc-2.0.0/sjmisc/R/set_labels.R | 105 ++++--- sjmisc-2.0.0/sjmisc/R/set_na.R | 258 ++++++------------- sjmisc-2.0.0/sjmisc/R/split_var.R | 229 ++++++++--------- sjmisc-2.0.0/sjmisc/R/spread_coef.R |only sjmisc-2.0.0/sjmisc/R/str_contains.R | 168 +++++++----- sjmisc-2.0.0/sjmisc/R/str_pos.R | 274 +++++++++----------- sjmisc-2.0.0/sjmisc/R/to_dummy.R | 208 +++++++-------- sjmisc-2.0.0/sjmisc/R/to_factor.R | 270 +++++++++----------- sjmisc-2.0.0/sjmisc/R/to_label.R | 231 ++++++++++++++--- sjmisc-2.0.0/sjmisc/R/to_long.R | 4 sjmisc-2.0.0/sjmisc/R/to_value.R | 248 ++++++++++-------- sjmisc-2.0.0/sjmisc/R/trim.R | 32 ++ sjmisc-2.0.0/sjmisc/R/unlabel.R | 112 ++++---- sjmisc-2.0.0/sjmisc/R/word_wrap.R | 130 ++++----- sjmisc-2.0.0/sjmisc/R/zap_labels.R | 154 +++++++---- sjmisc-2.0.0/sjmisc/README.md | 87 +++--- sjmisc-2.0.0/sjmisc/build/partial.rdb |binary sjmisc-2.0.0/sjmisc/inst/CITATION | 18 - sjmisc-2.0.0/sjmisc/man/add_labels.Rd | 50 ++- sjmisc-2.0.0/sjmisc/man/as_labelled.Rd | 3 sjmisc-2.0.0/sjmisc/man/big_mark.Rd |only sjmisc-2.0.0/sjmisc/man/dicho.Rd | 41 +-- sjmisc-2.0.0/sjmisc/man/drop_labels.Rd | 25 + sjmisc-2.0.0/sjmisc/man/empty_cols.Rd |only sjmisc-2.0.0/sjmisc/man/fill_labels.Rd | 27 -- sjmisc-2.0.0/sjmisc/man/flat_table.Rd |only sjmisc-2.0.0/sjmisc/man/frq.Rd | 39 +- sjmisc-2.0.0/sjmisc/man/get_label.Rd | 20 + sjmisc-2.0.0/sjmisc/man/get_labels.Rd | 38 +- sjmisc-2.0.0/sjmisc/man/get_na.Rd | 69 ++--- sjmisc-2.0.0/sjmisc/man/get_note.Rd | 12 sjmisc-2.0.0/sjmisc/man/get_values.Rd | 17 - sjmisc-2.0.0/sjmisc/man/group_labels.Rd | 13 sjmisc-2.0.0/sjmisc/man/group_str.Rd | 17 - sjmisc-2.0.0/sjmisc/man/group_var.Rd | 18 - sjmisc-2.0.0/sjmisc/man/is_even.Rd | 3 sjmisc-2.0.0/sjmisc/man/is_labelled.Rd | 2 sjmisc-2.0.0/sjmisc/man/is_odd.Rd | 3 sjmisc-2.0.0/sjmisc/man/lbl_df.Rd | 23 - sjmisc-2.0.0/sjmisc/man/merge_df.Rd | 9 sjmisc-2.0.0/sjmisc/man/merge_imputations.Rd |only sjmisc-2.0.0/sjmisc/man/read_sas.Rd | 12 sjmisc-2.0.0/sjmisc/man/read_spss.Rd | 89 ++---- sjmisc-2.0.0/sjmisc/man/read_stata.Rd | 12 sjmisc-2.0.0/sjmisc/man/rec.Rd | 50 ++- sjmisc-2.0.0/sjmisc/man/rec_pattern.Rd | 2 sjmisc-2.0.0/sjmisc/man/recode_to.Rd | 2 sjmisc-2.0.0/sjmisc/man/ref_lvl.Rd | 4 sjmisc-2.0.0/sjmisc/man/remove_labels.Rd | 17 - sjmisc-2.0.0/sjmisc/man/replace_na.Rd | 64 ++++ sjmisc-2.0.0/sjmisc/man/set_label.Rd | 7 sjmisc-2.0.0/sjmisc/man/set_labels.Rd | 53 ++- sjmisc-2.0.0/sjmisc/man/set_na.Rd | 88 ++---- sjmisc-2.0.0/sjmisc/man/set_note.Rd | 6 sjmisc-2.0.0/sjmisc/man/sjmisc-package.Rd | 67 ++-- sjmisc-2.0.0/sjmisc/man/split_var.Rd | 5 sjmisc-2.0.0/sjmisc/man/spread_coef.Rd |only sjmisc-2.0.0/sjmisc/man/str_contains.Rd | 38 ++ sjmisc-2.0.0/sjmisc/man/str_pos.Rd | 2 sjmisc-2.0.0/sjmisc/man/to_character.Rd |only sjmisc-2.0.0/sjmisc/man/to_dummy.Rd | 9 sjmisc-2.0.0/sjmisc/man/to_factor.Rd | 33 -- sjmisc-2.0.0/sjmisc/man/to_label.Rd | 60 +++- sjmisc-2.0.0/sjmisc/man/to_value.Rd | 20 + sjmisc-2.0.0/sjmisc/man/trim.Rd | 11 sjmisc-2.0.0/sjmisc/man/unlabel.Rd | 10 sjmisc-2.0.0/sjmisc/man/write_sas.Rd |only sjmisc-2.0.0/sjmisc/man/write_spss.Rd | 7 sjmisc-2.0.0/sjmisc/man/write_stata.Rd | 10 sjmisc-2.0.0/sjmisc/man/zap_labels.Rd | 12 sjmisc-2.0.0/sjmisc/man/zap_na_tags.Rd |only sjmisc-2.0.0/sjmisc/man/zap_unlabelled.Rd | 12 166 files changed, 4221 insertions(+), 3857 deletions(-)
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that
the user is probably willing to make: 'import()' and 'export()' determine
the data structure from the file extension, reasonable defaults are used for
data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is
natively supported (including from SSL/HTTPS), compressed files can be read
directly without explicit decompression, and fast import packages are used where
appropriate. An additional convenience function, 'convert()', provides a simple
method for converting between file types.
Author: Jason Becker [ctb],
Chung-hong Chan [aut],
Geoffrey CH Chan [ctb],
Thomas J. Leeper [aut, cre],
Christopher Gandrud [ctb],
Andrew MacDonald [ctb],
Ista Zahn [ctb],
Stanislaus Stadlmann [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between rio versions 0.4.12 dated 2016-08-10 and 0.4.16 dated 2016-09-25
rio-0.4.12/rio/NEWS |only rio-0.4.12/rio/R/unsupported.R |only rio-0.4.12/rio/inst/examples/example2.csvy |only rio-0.4.12/rio/inst/examples/example3.csvy |only rio-0.4.16/rio/DESCRIPTION | 26 +- rio-0.4.16/rio/MD5 | 70 +++---- rio-0.4.16/rio/NAMESPACE | 209 +++++++++++++--------- rio-0.4.16/rio/NEWS.md |only rio-0.4.16/rio/R/compression.R | 5 rio-0.4.16/rio/R/convert.R | 35 +++ rio-0.4.16/rio/R/export.R | 94 ++++++++- rio-0.4.16/rio/R/export_methods.R | 116 ++++++++---- rio-0.4.16/rio/R/extensions.R |only rio-0.4.16/rio/R/gather_attrs.R | 13 + rio-0.4.16/rio/R/import.R | 104 +++++++++- rio-0.4.16/rio/R/import_methods.R | 122 ++++++++++-- rio-0.4.16/rio/R/rio.R |only rio-0.4.16/rio/R/utils.R | 5 rio-0.4.16/rio/README.md | 34 +-- rio-0.4.16/rio/inst/doc/rio.R | 44 ++-- rio-0.4.16/rio/inst/doc/rio.Rmd | 51 ++--- rio-0.4.16/rio/inst/doc/rio.html | 47 ++-- rio-0.4.16/rio/inst/examples/example.csvy | 38 ++-- rio-0.4.16/rio/inst/examples/mtcars.ods |only rio-0.4.16/rio/inst/examples/twotables.html |only rio-0.4.16/rio/man/convert.Rd | 96 +++++----- rio-0.4.16/rio/man/export.Rd | 71 ++++--- rio-0.4.16/rio/man/extensions.Rd | 40 +++- rio-0.4.16/rio/man/gather_attrs.Rd | 19 +- rio-0.4.16/rio/man/import.Rd | 45 +++- rio-0.4.16/rio/man/rio.Rd | 11 + rio-0.4.16/rio/tests/testthat/test_compress.R | 4 rio-0.4.16/rio/tests/testthat/test_convert.R | 32 +-- rio-0.4.16/rio/tests/testthat/test_errors.R | 8 rio-0.4.16/rio/tests/testthat/test_extensions.R |only rio-0.4.16/rio/tests/testthat/test_format_dta.R | 11 - rio-0.4.16/rio/tests/testthat/test_format_html.R | 7 rio-0.4.16/rio/tests/testthat/test_format_ods.R | 7 rio-0.4.16/rio/tests/testthat/test_gather_attrs.R | 4 rio-0.4.16/rio/tests/testthat/test_remote.R | 2 rio-0.4.16/rio/vignettes/rio.Rmd | 51 ++--- 41 files changed, 950 insertions(+), 471 deletions(-)
Title: Data Analysis in Ecology
Description: Miscellaneous functions for data analysis in ecology, with special emphasis on spatial data.
Author: Patrick Giraudoux <patrick.giraudoux@univ-fcomte.fr>
Maintainer: Patrick Giraudoux <patrick.giraudoux@univ-fcomte.fr>
Diff between pgirmess versions 1.6.4 dated 2016-01-31 and 1.6.5 dated 2016-09-25
pgirmess-1.6.4/pgirmess/man/expandpol.rd |only pgirmess-1.6.5/pgirmess/DESCRIPTION | 10 +++++----- pgirmess-1.6.5/pgirmess/MD5 | 20 +++++++++++--------- pgirmess-1.6.5/pgirmess/NAMESPACE | 10 +++++----- pgirmess-1.6.5/pgirmess/R/CI.r | 15 ++++++++------- pgirmess-1.6.5/pgirmess/R/findR.R |only pgirmess-1.6.5/pgirmess/data/preybiom.rda |binary pgirmess-1.6.5/pgirmess/data/siegelp179.rda |binary pgirmess-1.6.5/pgirmess/man/CI.rd | 28 +++++++++++++++------------- pgirmess-1.6.5/pgirmess/man/expandpoly.rd |only pgirmess-1.6.5/pgirmess/man/findR.rd |only pgirmess-1.6.5/pgirmess/man/kruskalmc.Rd | 10 +++++----- pgirmess-1.6.5/pgirmess/man/polycirc.rd | 3 +-- 13 files changed, 50 insertions(+), 46 deletions(-)
Title: Meta-Analysis Package for R
Description: A comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat, GOSH plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures (e.g., due to phylogenetic relatedness) can also be conducted.
Author: Wolfgang Viechtbauer [aut, cre]
Maintainer: Wolfgang Viechtbauer <wvb@metafor-project.org>
Diff between metafor versions 1.9-8 dated 2015-09-28 and 1.9-9 dated 2016-09-25
metafor-1.9-8/metafor/R/baujat.rma.mh.r |only metafor-1.9-8/metafor/R/baujat.rma.peto.r |only metafor-1.9-8/metafor/R/baujat.rma.uni.r |only metafor-1.9-8/metafor/R/head.list.rma.r |only metafor-1.9-8/metafor/R/zzz.R |only metafor-1.9-8/metafor/tests/test-all.R |only metafor-1.9-8/metafor/tests/testthat/Rplots.pdf |only metafor-1.9-8/metafor/tests/testthat/test_confint.r |only metafor-1.9-8/metafor/tests/testthat/test_escalc.r |only metafor-1.9-8/metafor/tests/testthat/test_handling_of_edge_cases_due_to_zeros.r |only metafor-1.9-8/metafor/tests/testthat/test_metan_vs_rma.mh_with_dat.bcg.r |only metafor-1.9-8/metafor/tests/testthat/test_metan_vs_rma.peto_with_dat.bcg.r |only metafor-1.9-8/metafor/tests/testthat/test_metan_vs_rma.uni_with_dat.bcg.r |only metafor-1.9-8/metafor/tests/testthat/test_regression_with_rma.r |only metafor-1.9-8/metafor/tests/testthat/test_rma_error_handling.r |only metafor-1.9-8/metafor/tests/testthat/test_rma_handling_nas.r |only metafor-1.9-8/metafor/tests/testthat/test_rma_vs_direct_computation.r |only metafor-1.9-8/metafor/tests/testthat/test_rma_vs_lm_and_lme.r |only metafor-1.9-8/metafor/tests/testthat/test_rma_weights.r |only metafor-1.9-9/metafor/DESCRIPTION | 20 metafor-1.9-9/metafor/MD5 | 646 - metafor-1.9-9/metafor/NAMESPACE | 228 metafor-1.9-9/metafor/NEWS | 2673 +++--- metafor-1.9-9/metafor/R/AIC.rma.r | 84 metafor-1.9-9/metafor/R/BIC.rma.r | 73 metafor-1.9-9/metafor/R/addpoly.default.r | 384 metafor-1.9-9/metafor/R/addpoly.r | 5 metafor-1.9-9/metafor/R/addpoly.rma.r | 83 metafor-1.9-9/metafor/R/anova.rma.r | 456 - metafor-1.9-9/metafor/R/baujat.r | 5 metafor-1.9-9/metafor/R/baujat.rma.r |only metafor-1.9-9/metafor/R/bldiag.r | 49 metafor-1.9-9/metafor/R/blup.r | 5 metafor-1.9-9/metafor/R/blup.rma.uni.r | 174 metafor-1.9-9/metafor/R/coef.permutest.rma.uni.r | 30 metafor-1.9-9/metafor/R/coef.rma.r | 22 metafor-1.9-9/metafor/R/coef.summary.rma.r | 37 metafor-1.9-9/metafor/R/confint.rma.glmm.r | 15 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metafor-1.9-9/metafor/man/dat.gibson2002.Rd | 128 metafor-1.9-9/metafor/man/dat.hackshaw1998.Rd | 76 metafor-1.9-9/metafor/man/dat.hart1999.Rd | 126 metafor-1.9-9/metafor/man/dat.hasselblad1998.Rd | 229 metafor-1.9-9/metafor/man/dat.hine1989.Rd | 80 metafor-1.9-9/metafor/man/dat.ishak2007.Rd | 122 metafor-1.9-9/metafor/man/dat.konstantopoulos2011.Rd | 122 metafor-1.9-9/metafor/man/dat.lee2004.Rd | 66 metafor-1.9-9/metafor/man/dat.li2007.Rd |only metafor-1.9-9/metafor/man/dat.linde2005.Rd | 120 metafor-1.9-9/metafor/man/dat.mcdaniel1994.Rd | 130 metafor-1.9-9/metafor/man/dat.molloy2014.Rd | 112 metafor-1.9-9/metafor/man/dat.nielweise2007.Rd | 88 metafor-1.9-9/metafor/man/dat.nielweise2008.Rd | 88 metafor-1.9-9/metafor/man/dat.normand1999.Rd | 94 metafor-1.9-9/metafor/man/dat.pignon2000.Rd | 104 metafor-1.9-9/metafor/man/dat.pritz1997.Rd | 92 metafor-1.9-9/metafor/man/dat.raudenbush1985.Rd | 98 metafor-1.9-9/metafor/man/dat.riley2003.Rd | 88 metafor-1.9-9/metafor/man/dat.senn2013.Rd | 299 metafor-1.9-9/metafor/man/dat.yusuf1985.Rd | 82 metafor-1.9-9/metafor/man/escalc.Rd | 1027 +- metafor-1.9-9/metafor/man/fitstats.Rd | 155 metafor-1.9-9/metafor/man/fitted.rma.Rd | 83 metafor-1.9-9/metafor/man/forest.Rd | 72 metafor-1.9-9/metafor/man/forest.cumul.rma.Rd | 190 metafor-1.9-9/metafor/man/forest.default.Rd | 214 metafor-1.9-9/metafor/man/forest.rma.Rd | 424 metafor-1.9-9/metafor/man/fsn.Rd | 137 metafor-1.9-9/metafor/man/funnel.Rd | 309 metafor-1.9-9/metafor/man/gosh.Rd |only metafor-1.9-9/metafor/man/hc.Rd | 135 metafor-1.9-9/metafor/man/influence.rma.mv.Rd | 84 metafor-1.9-9/metafor/man/influence.rma.uni.Rd | 221 metafor-1.9-9/metafor/man/labbe.Rd | 124 metafor-1.9-9/metafor/man/leave1out.Rd | 171 metafor-1.9-9/metafor/man/llplot.Rd | 126 metafor-1.9-9/metafor/man/metafor-package.Rd | 176 metafor-1.9-9/metafor/man/metafor.news.Rd | 48 metafor-1.9-9/metafor/man/model.matrix.rma.Rd | 73 metafor-1.9-9/metafor/man/permutest.Rd | 236 metafor-1.9-9/metafor/man/plot.cumul.rma.Rd | 135 metafor-1.9-9/metafor/man/plot.gosh.rma.Rd |only metafor-1.9-9/metafor/man/plot.infl.rma.uni.Rd | 133 metafor-1.9-9/metafor/man/plot.rma.Rd | 109 metafor-1.9-9/metafor/man/predict.rma.Rd | 237 metafor-1.9-9/metafor/man/print.anova.rma.Rd | 92 metafor-1.9-9/metafor/man/print.confint.rma.Rd | 74 metafor-1.9-9/metafor/man/print.escalc.Rd | 137 metafor-1.9-9/metafor/man/print.fsn.Rd | 64 metafor-1.9-9/metafor/man/print.hc.rma.uni.Rd | 78 metafor-1.9-9/metafor/man/print.list.rma.Rd | 58 metafor-1.9-9/metafor/man/print.permutest.rma.uni.Rd | 78 metafor-1.9-9/metafor/man/print.ranktest.rma.Rd | 72 metafor-1.9-9/metafor/man/print.regtest.rma.Rd | 82 metafor-1.9-9/metafor/man/print.rma.uni.Rd | 172 metafor-1.9-9/metafor/man/print.robust.rma.Rd | 80 metafor-1.9-9/metafor/man/profile.rma.Rd | 206 metafor-1.9-9/metafor/man/qqnorm.rma.Rd | 148 metafor-1.9-9/metafor/man/radial.Rd | 159 metafor-1.9-9/metafor/man/ranef.Rd |only metafor-1.9-9/metafor/man/ranktest.Rd | 107 metafor-1.9-9/metafor/man/regtest.Rd | 215 metafor-1.9-9/metafor/man/replmiss.Rd | 64 metafor-1.9-9/metafor/man/residuals.rma.Rd | 165 metafor-1.9-9/metafor/man/rma.glmm.Rd | 441 - metafor-1.9-9/metafor/man/rma.mh.Rd | 265 metafor-1.9-9/metafor/man/rma.mv.Rd | 468 - metafor-1.9-9/metafor/man/rma.peto.Rd | 207 metafor-1.9-9/metafor/man/rma.uni.Rd | 626 - metafor-1.9-9/metafor/man/robust.Rd | 210 metafor-1.9-9/metafor/man/to.long.Rd | 201 metafor-1.9-9/metafor/man/to.table.Rd | 189 metafor-1.9-9/metafor/man/transf.Rd | 222 metafor-1.9-9/metafor/man/trimfill.Rd | 141 metafor-1.9-9/metafor/man/update.rma.Rd | 119 metafor-1.9-9/metafor/man/vcov.rma.Rd | 95 metafor-1.9-9/metafor/man/weights.rma.Rd | 91 metafor-1.9-9/metafor/tests/testthat.R |only metafor-1.9-9/metafor/tests/testthat/test_analysis_example_berkey1995.r | 134 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_berkey1998.r | 140 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_dersimonian2007.r | 106 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_gleser2009.r | 444 - metafor-1.9-9/metafor/tests/testthat/test_analysis_example_henmi2010.r |only metafor-1.9-9/metafor/tests/testthat/test_analysis_example_jackson2014.r |only metafor-1.9-9/metafor/tests/testthat/test_analysis_example_konstantopoulos2011.r | 287 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_law2016.r |only metafor-1.9-9/metafor/tests/testthat/test_analysis_example_lipsey2001.r | 216 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_miller1978.r | 179 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_morris2008.r | 134 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_normand1999.r | 214 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_raudenbush1985.r | 169 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_raudenbush2009.r | 275 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_rothman2008.r | 732 - metafor-1.9-9/metafor/tests/testthat/test_analysis_example_stijnen2010.r | 405 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_vanhouwelingen1993.r | 99 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_vanhouwelingen2002.r | 361 metafor-1.9-9/metafor/tests/testthat/test_analysis_example_viechtbauer2005.r |only metafor-1.9-9/metafor/tests/testthat/test_analysis_example_viechtbauer2007a.r |only metafor-1.9-9/metafor/tests/testthat/test_analysis_example_viechtbauer2007b.r |only metafor-1.9-9/metafor/tests/testthat/test_analysis_example_yusuf1985.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_confint.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_escalc.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_fitstats.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_fsn.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_funnel.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_handling_of_edge_cases_due_to_zeros.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_head_tail_list_rma.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_influence.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_metan_vs_rma.mh_with_dat.bcg.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_metan_vs_rma.peto_with_dat.bcg.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_metan_vs_rma.uni_with_dat.bcg.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_permutest.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_plot_rma.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_pub_bias.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_residuals.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_rma_error_handling.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_rma_handling_nas.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_rma_mv.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_rma_uni.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_rma_vs_direct_computation.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_robust.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_to_long_to_table.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_transf.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_update.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_vcov.r |only metafor-1.9-9/metafor/tests/testthat/test_misc_weights.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_baujat_plot.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_contour-enhanced_funnel_plot.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_cumulative_forest_plot.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_forest_plot_with_subgroups.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_funnel_plot_variations.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_funnel_plot_with_trim_and_fill.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_gosh.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_labbe_plot.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_meta-analytic_scatterplot.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_normal_qq_plots.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_plot_of_cumulative_results.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_plot_of_influence_diagnostics.r |only metafor-1.9-9/metafor/tests/testthat/test_plots_radial_plot.r |only metafor-1.9-9/metafor/tests/testthat/test_tips_regression_with_rma.r |only metafor-1.9-9/metafor/tests/testthat/test_tips_rma_vs_lm_and_lme.r |only metafor-1.9-9/metafor/vignettes/metafor.pdf.asis | 4 metafor-1.9-9/metafor/vignettes/metafor_diagram.pdf.asis | 4 367 files changed, 37464 insertions(+), 31107 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading and writing foreign files containing
spectral data from spectrometers and their associated software, and output
from simulation models in common use. As well as functions for exchange
of spectral data with other R packages.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.10 dated 2016-08-28 and 0.4.11 dated 2016-09-25
DESCRIPTION | 14 MD5 | 65 NAMESPACE | 1 NEWS | 9 R/read-avaspec-csv.r | 2 R/read-csi-dat.r |only R/read-libradtran-vesa.r | 2 R/read-licor-prn.r | 27 R/read-macam-dta.r | 2 R/read-oojaz-file.r | 2 R/read-oopi-file.r | 2 R/read-ooss-file.r | 2 R/read-tuv-file.r | 2 README.md | 11 inst/CITATION |only inst/doc/user-guide.R | 8 inst/doc/user-guide.Rnw | 21 inst/doc/user-guide.pdf | 4517 ++++++++++++----------- inst/staticdocs/README.md |only inst/staticdocs/index.r | 7 man/photobiologyInOut-package.Rd | 2 man/read_avaspec_csv.Rd | 2 man/read_csi_dat.Rd |only man/read_libradtran_vesa.Rd | 2 man/read_licor_prn.Rd | 4 man/read_macam_dta.Rd | 2 man/read_oo_jazirrad.Rd | 2 man/read_oo_pidata.Rd | 2 man/read_oo_ssirrad.Rd | 2 man/read_tuv_usrout.Rd | 2 tests/testthat/data-test/readr-read-table-2.txt |only tests/testthat/data-test/readr-read-table.txt |only tests/testthat/data-test/spectrum-licor-long.PRN |only tests/testthat/test-licor.R | 16 vignettes/data-vignettes/cr6-day.dat |only vignettes/data-vignettes/cr6-hour.dat |only vignettes/user-guide-concordance.tex | 17 vignettes/user-guide.Rnw | 21 38 files changed, 2548 insertions(+), 2220 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Time Series Analysis and Control Package
Description: Functions for statistical analysis, prediction and control of time series.
Author: The Institute of Statistical Mathematics
Maintainer: Masami Saga <msaga@mtb.biglobe.ne.jp>
Diff between timsac versions 1.3.3 dated 2014-07-31 and 1.3.5 dated 2016-09-25
timsac-1.3.3/timsac/inst/doc/index.html |only timsac-1.3.3/timsac/inst/doc/timsac-manual.pdf |only timsac-1.3.5/timsac/DESCRIPTION | 11 timsac-1.3.5/timsac/MD5 | 116 - timsac-1.3.5/timsac/NAMESPACE | 4 timsac-1.3.5/timsac/R/timsac.R | 12 timsac-1.3.5/timsac/data/Airpollution.rda |binary timsac-1.3.5/timsac/data/Amerikamaru.rda |binary timsac-1.3.5/timsac/data/Blsallfood.rda |binary timsac-1.3.5/timsac/data/Canadianlynx.rda |binary timsac-1.3.5/timsac/data/LaborData.rda |binary timsac-1.3.5/timsac/data/Powerplant.rda |binary timsac-1.3.5/timsac/data/bispecData.rda |binary timsac-1.3.5/timsac/data/locarData.rda |binary timsac-1.3.5/timsac/data/nonstData.rda |binary timsac-1.3.5/timsac/inst/doc/changes.txt | 16 timsac-1.3.5/timsac/man/decomp.Rd | 10 timsac-1.3.5/timsac/man/timsac-package.Rd | 1 timsac-1.3.5/timsac/src/auspecf.f | 23 timsac-1.3.5/timsac/src/autarmf.f | 814 ++++++---- timsac-1.3.5/timsac/src/autcorf.f | 25 timsac-1.3.5/timsac/src/bayseaf.f | 989 ++++++++---- timsac-1.3.5/timsac/src/bispecf.f | 271 ++- timsac-1.3.5/timsac/src/blocarf.f | 117 - timsac-1.3.5/timsac/src/blomarf.f | 227 +- timsac-1.3.5/timsac/src/bsubst.c | 23 timsac-1.3.5/timsac/src/bsubstf.f | 546 ++++--- timsac-1.3.5/timsac/src/canarmf.f | 503 +++--- timsac-1.3.5/timsac/src/canocaf.f | 934 +++++++----- timsac-1.3.5/timsac/src/comsub.f | 1904 ++++++++++++++++--------- timsac-1.3.5/timsac/src/covgenf.f | 103 - timsac-1.3.5/timsac/src/decomp6f.f | 1029 +++++++++---- timsac-1.3.5/timsac/src/exsarf.f | 433 +++-- timsac-1.3.5/timsac/src/fftcorf.f | 71 timsac-1.3.5/timsac/src/fpeautf.f | 54 timsac-1.3.5/timsac/src/fpecf.f | 115 - timsac-1.3.5/timsac/src/markovf.f | 1560 +++++++++++++------- timsac-1.3.5/timsac/src/mlocarf.f | 142 + timsac-1.3.5/timsac/src/mlomarf.f | 183 +- timsac-1.3.5/timsac/src/mulbarf.f | 47 timsac-1.3.5/timsac/src/mulcorf.f | 71 timsac-1.3.5/timsac/src/mulfref.f | 129 + timsac-1.3.5/timsac/src/mulmarf.f | 51 timsac-1.3.5/timsac/src/mulnosf.f | 45 timsac-1.3.5/timsac/src/mulrspf.f | 118 + timsac-1.3.5/timsac/src/mulspef.f | 129 + timsac-1.3.5/timsac/src/nonstf.f | 364 ++-- timsac-1.3.5/timsac/src/optdesf.f | 293 ++- timsac-1.3.5/timsac/src/optsimf.f | 139 + timsac-1.3.5/timsac/src/perarsf.f | 73 timsac-1.3.5/timsac/src/prdctrf.f | 441 +++-- timsac-1.3.5/timsac/src/raspecf.f | 84 - timsac-1.3.5/timsac/src/sglfref.f | 71 timsac-1.3.5/timsac/src/simconf.f | 265 ++- timsac-1.3.5/timsac/src/spgrhf.f | 165 +- timsac-1.3.5/timsac/src/thirmof.f | 159 +- timsac-1.3.5/timsac/src/unibarf.f | 50 timsac-1.3.5/timsac/src/unimarf.f | 44 timsac-1.3.5/timsac/src/wnoisef.f | 140 + timsac-1.3.5/timsac/src/xsarmaf.f | 345 ++-- 60 files changed, 8533 insertions(+), 4926 deletions(-)
Title: Programming with Big Data -- Scalable Linear Algebra Packages
Description: Utilizing scalable linear algebra packages mainly
including BLACS, PBLAS, and ScaLAPACK in double precision via
pbdMPI based on ScaLAPACK version 2.0.2.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
George Ostrouchov [aut],
Pragneshkumar Patel [aut],
Brian Ripley [ctb] (Solaris & Mac)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdSLAP versions 0.2-1 dated 2016-01-22 and 0.2-2 dated 2016-09-25
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 41 +++++++++++++++++++++-------------------- inst/CITATION | 8 ++++---- src/BLACS/Bdef_wcc.h |only src/BLACS/blacs2sys_.c | 5 +++++ src/BLACS/blacs_get_.c | 10 ++++++++++ src/BLACS/blacs_init_.c | 4 ++++ src/BLACS/dgamn2d_.c | 7 +++++++ src/BLACS/dgamx2d_.c | 7 +++++++ src/BLACS/dgsum2d_.c | 3 +++ src/BLACS/igamn2d_.c | 9 +++++++++ src/BLACS/igamx2d_.c | 9 +++++++++ src/BLACS/igsum2d_.c | 3 +++ src/BLACS/sys2blacs_.c | 4 ++++ src/Makevars.in | 4 ++-- src/Makevars.win | 4 ++-- src/REDIST/pgemraux.c | 3 ++- src/REDIST/redist.h | 5 +++++ src/SLmake.inc.org | 4 ++-- src/SLmake.inc.win | 6 +++--- src/TOOLS/SL_gridreshape.c | 4 ++++ 22 files changed, 115 insertions(+), 38 deletions(-)
Title: Multiple Logistic Regression for 3D Chromatin Domain Border
Analysis
Description: We propose a multiple logistic regression model to assess the influences of genomic features such as DNA-binding proteins and functional elements on topological domain borders.
Author: Raphael Mourad
Maintainer: Raphael Mourad <raphael.mourad@ibcg.biotoul.fr>
Diff between HiCfeat versions 1.1 dated 2016-04-28 and 1.2 dated 2016-09-25
DESCRIPTION | 10 - MD5 | 12 +- NAMESPACE | 1 R/BorderAnalysisFun.R | 239 +++++++++++++++++++---------------------------- build/partial.rdb |binary man/HiCfeat-package.Rd | 2 man/borderAnalysisFun.Rd | 7 - 7 files changed, 112 insertions(+), 159 deletions(-)