Title: Discover and Install Useful RStudio Addins
Description: Browse through a continuously updated list of existing RStudio
addins and install/uninstall their corresponding packages.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between addinslist versions 0.1 dated 2016-05-04 and 0.2 dated 2016-09-28
DESCRIPTION | 6 +++--- MD5 | 9 ++++++--- NEWS.md |only R/utils.R | 2 +- README.md | 50 +++++++++++++++++++++++++++++++++++++++++--------- inst/media |only 6 files changed, 51 insertions(+), 16 deletions(-)
Title: Tools for Preprocessing Visual World Data
Description: Gaze data from the Visual World Paradigm requires significant
preprocessing prior to plotting and analyzing the data. This package
provides functions for preparing visual world eye-tracking data for
statistical analysis and plotting. It can prepare data for linear
analyses (e.g., ANOVA, Gaussian-family LMER, Gaussian-family GAMM) as
well as logistic analyses (e.g., binomial-family LMER and binomial-family GAMM).
Additionally, it contains various plotting functions for creating grand average and
conditional average plots. See the vignette for samples of the functionality.
Currently, the functions in this package are designed for handling data
collected with SR Research Eyelink eye trackers using Sample Reports created
in SR Research Data Viewer; however, in subsequent releases we would like
to add functionality for data collected with other systems.
Author: Vincent Porretta [aut, cre],
Aki-Juhani Kyröläinen [aut],
Jacolien van Rij [ctb],
Juhani Järvikivi [ctb]
Maintainer: Vincent Porretta <vincentporretta@gmail.com>
Diff between VWPre versions 0.7.0 dated 2016-06-19 and 0.9.0 dated 2016-09-28
VWPre-0.7.0/VWPre/inst/doc/SR_Example.R |only VWPre-0.7.0/VWPre/inst/doc/SR_Example.Rmd |only VWPre-0.7.0/VWPre/inst/doc/SR_Example.html |only VWPre-0.7.0/VWPre/vignettes/SR_Example.Rmd |only VWPre-0.9.0/VWPre/DESCRIPTION | 12 VWPre-0.9.0/VWPre/MD5 | 92 - VWPre-0.9.0/VWPre/NAMESPACE | 63 VWPre-0.9.0/VWPre/R/VWPre.R | 197 +- VWPre-0.9.0/VWPre/R/calculations.R | 838 +++++----- VWPre-0.9.0/VWPre/R/dataset.r | 4 VWPre-0.9.0/VWPre/R/diagnostics.R | 967 ++++++------ VWPre-0.9.0/VWPre/R/fasttrack.R | 232 +-- VWPre-0.9.0/VWPre/R/formatting.R | 861 +++++------ VWPre-0.9.0/VWPre/R/formatting_ias.R |only VWPre-0.9.0/VWPre/R/plotting.R | 1297 ++++++++--------- VWPre-0.9.0/VWPre/R/utilities.R | 642 ++++---- VWPre-0.9.0/VWPre/R/zzz.R | 47 VWPre-0.9.0/VWPre/README | 55 VWPre-0.9.0/VWPre/build/vignette.rds |binary VWPre-0.9.0/VWPre/data/VWdat.rda |binary VWPre-0.9.0/VWPre/inst/NEWS | 36 VWPre-0.9.0/VWPre/inst/doc/SR_Basic_Preprocessing.R |only VWPre-0.9.0/VWPre/inst/doc/SR_Basic_Preprocessing.Rmd |only VWPre-0.9.0/VWPre/inst/doc/SR_Basic_Preprocessing.html |only VWPre-0.9.0/VWPre/inst/doc/SR_Interest_Areas.R |only VWPre-0.9.0/VWPre/inst/doc/SR_Interest_Areas.Rmd |only VWPre-0.9.0/VWPre/inst/doc/SR_Interest_Areas.html |only VWPre-0.9.0/VWPre/inst/doc/SR_Message_Alignment.R |only VWPre-0.9.0/VWPre/inst/doc/SR_Message_Alignment.Rmd |only VWPre-0.9.0/VWPre/inst/doc/SR_Message_Alignment.html |only VWPre-0.9.0/VWPre/inst/doc/SR_Plotting.R |only VWPre-0.9.0/VWPre/inst/doc/SR_Plotting.Rmd |only VWPre-0.9.0/VWPre/inst/doc/SR_Plotting.html |only VWPre-0.9.0/VWPre/man/VWPre.Rd | 233 +-- VWPre-0.9.0/VWPre/man/VWdat.Rd | 4 VWPre-0.9.0/VWPre/man/align_msg.Rd |only VWPre-0.9.0/VWPre/man/bin_prop.Rd | 90 - VWPre-0.9.0/VWPre/man/check_ia.Rd | 54 VWPre-0.9.0/VWPre/man/check_msg_time.Rd |only VWPre-0.9.0/VWPre/man/check_samples_per_bin.Rd | 56 VWPre-0.9.0/VWPre/man/check_time_series.Rd | 11 VWPre-0.9.0/VWPre/man/create_binomial.Rd | 83 - VWPre-0.9.0/VWPre/man/create_time_series.Rd | 24 VWPre-0.9.0/VWPre/man/custom_ia.Rd |only VWPre-0.9.0/VWPre/man/fasttrack.Rd | 154 +- VWPre-0.9.0/VWPre/man/plot_avg.Rd | 2 VWPre-0.9.0/VWPre/man/plot_avg_contour.Rd | 7 VWPre-0.9.0/VWPre/man/plot_transformation_app.Rd | 41 VWPre-0.9.0/VWPre/man/prep_data.Rd | 14 VWPre-0.9.0/VWPre/man/recode_ia.Rd | 78 - VWPre-0.9.0/VWPre/man/relabel_na.Rd | 2 VWPre-0.9.0/VWPre/man/rename_columns.Rd | 66 VWPre-0.9.0/VWPre/man/select_recorded_eye.Rd | 2 VWPre-0.9.0/VWPre/man/transform_to_elogit.Rd | 108 - VWPre-0.9.0/VWPre/vignettes/IAdat.rda |only VWPre-0.9.0/VWPre/vignettes/IAreport.txt |only VWPre-0.9.0/VWPre/vignettes/SR_Basic_Preprocessing.Rmd |only VWPre-0.9.0/VWPre/vignettes/SR_Interest_Areas.Rmd |only VWPre-0.9.0/VWPre/vignettes/SR_Message_Alignment.Rmd |only VWPre-0.9.0/VWPre/vignettes/SR_Plotting.Rmd |only 60 files changed, 3286 insertions(+), 3086 deletions(-)
Title: Generate PMML for Various Models
Description: The Predictive Model Markup Language (PMML) is an XML-based
language which provides a way for applications to define statistical and
data mining models and to share models between PMML compliant applications.
More information about PMML and the Data Mining Group can be found at http://
www.dmg.org. The generated PMML can be imported into any PMML consuming
application, such as the Zementis ADAPA and UPPI scoring engines which allow for
predictive models built in R to be deployed and executed on site, in the cloud
(Amazon, IBM, and FICO), in-database (IBM Netezza, Pivotal, Sybase IQ, Teradata
and Teradata Aster) or Hadoop (Datameer and Hive).
Author: Graham Williams, Tridivesh Jena, Wen Ching Lin, Michael Hahsler
(arules), Zementis Inc, Hemant Ishwaran, Udaya B. Kogalur, Rajarshi Guha,
Dmitriy Bolotov
Maintainer: Tridivesh Jena <rpmmlsupport@zementis.net>
Diff between pmml versions 1.5.0 dated 2015-08-05 and 1.5.1 dated 2016-09-28
DESCRIPTION | 34 +++++++++++++++++----------------- MD5 | 38 +++++++++++++++++++------------------- inst/ChangeLog | 3 +++ man/addOutputField.Rd | 26 +++++++++++++------------- man/functionToPMML.Rd | 11 ++++++----- man/makeIntervals.Rd | 9 +++++---- man/makeOutputNodes.Rd | 6 +++--- man/makeValues.Rd | 4 ++-- man/pmml.ada.Rd | 2 +- man/pmml.arules.Rd | 2 +- man/pmml.coxph.Rd | 2 +- man/pmml.cv.glmnet.Rd | 2 +- man/pmml.ksvm.Rd | 2 +- man/pmml.multinom.Rd | 2 +- man/pmml.naiveBayes.Rd | 2 +- man/pmml.nnet.Rd | 2 +- man/pmml.randomForest.Rd | 2 +- man/pmml.rfsrc.Rd | 2 +- man/pmml.rpart.Rd | 2 +- man/pmml.svm.Rd | 2 +- 20 files changed, 80 insertions(+), 75 deletions(-)
Title: Full Factorials, Orthogonal Arrays and Base Utilities for DoE
Packages
Description: Package DoE.base creates full factorial experimental designs and designs based on orthogonal arrays for (industrial) experiments. Additionally, it provides utility functions for the class design, which is also used by other packages for designed experiments.
Author: Ulrike Groemping [aut, cre],
Boyko Amarov [ctb],
Hongquan Xu [ctb]
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between DoE.base versions 0.28 dated 2016-03-10 and 0.29 dated 2016-09-28
DESCRIPTION | 14 ++++++++------ MD5 | 39 +++++++++++++++++++++++---------------- NAMESPACE | 14 ++++++++------ R/ICFT.R |only R/ICFTs.R |only R/P2.2.R |only R/corrPlot.R |only R/fac.design.R | 15 ++++++++++++--- R/plot.design.R | 16 +++++++++++----- R/rerandomize.R | 4 +++- R/rotations.R |only R/show.oas.R | 5 ++++- R/sysdata.rda |binary R/tupleSel.R | 6 +++--- inst/NEWS | 25 +++++++++++++++++++++++++ man/ICFTs.Rd |only man/corrPlot.Rd |only man/expansive.replace.Rd | 2 +- man/generalized.word.length.Rd | 2 ++ man/getblock.Rd | 8 +++++--- man/oacat.Rd | 20 ++++++++++---------- man/plot.design.Rd | 5 +++-- man/show.oas.Rd | 20 +++++++++++++------- man/utilities.Rd | 6 ++++++ 24 files changed, 137 insertions(+), 64 deletions(-)
Title: Applied Statistical Time Series Analysis
Description: Contains data sets and scripts to accompany Time Series Analysis and Its Applications: With R Examples by Shumway and Stoffer, fourth edition.
Author: David Stoffer
Maintainer: David Stoffer <stoffer@pitt.edu>
Diff between astsa versions 1.5 dated 2016-07-31 and 1.6 dated 2016-09-28
ChangeLog | 10 +++++++++- DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++++----- data/chicken.rda |only data/globtemp.rda |only data/globtempl.rda |only man/astsa-package.Rd | 4 ++-- man/chicken.Rd |only man/globtemp.Rd |only man/globtempl.Rd |only man/gtemp.Rd | 6 +++--- man/gtemp2.Rd | 4 ++-- 12 files changed, 31 insertions(+), 17 deletions(-)
More information about RDocumentation at CRAN
Permanent link
Title: High Dimensional Multiclass Classification Using Sparse Group
Lasso
Description: Multinomial logistic regression with sparse group lasso penalty.
Simultaneous feature selection and parameter estimation for classification.
Suitable for high dimensional multiclass classification with many classes. The
algorithm computes the sparse group lasso penalized maximum likelihood estimate.
Use of parallel computing for cross validation and subsampling is supported through
the 'foreach' and 'doParallel' packages. Development version is on GitHub, please
report package issues on GitHub.
Author: Martin Vincent
Maintainer: Martin Vincent <martin.vincent.dk@gmail.com>
Diff between msgl versions 2.2.1 dated 2016-09-10 and 2.3.0 dated 2016-09-28
msgl-2.2.1/msgl/man/msgl.c.config.Rd |only msgl-2.2.1/msgl/src/pkg_c_config.h |only msgl-2.3.0/msgl/DESCRIPTION | 20 +++--- msgl-2.3.0/msgl/MD5 | 42 ++++++------- msgl-2.3.0/msgl/NAMESPACE | 2 msgl-2.3.0/msgl/R/msgl_config.R | 76 ++++++++++-------------- msgl-2.3.0/msgl/R/msgl_cv.R | 58 ++++++++++++++---- msgl-2.3.0/msgl/R/msgl_subsampling.R | 58 ++++++++++++++++-- msgl-2.3.0/msgl/R/startup.R | 10 +-- msgl-2.3.0/msgl/inst/NEWS.Rd | 6 + msgl-2.3.0/msgl/inst/doc/quick-start.Rmd | 63 ++++++++++--------- msgl-2.3.0/msgl/inst/doc/quick-start.html | 64 +++++++++----------- msgl-2.3.0/msgl/man/msgl.algorithm.config.Rd | 4 - msgl-2.3.0/msgl/man/msgl.cv.Rd | 11 ++- msgl-2.3.0/msgl/man/msgl.subsampling.Rd | 8 +- msgl-2.3.0/msgl/src/rmsgl.cpp | 1 msgl-2.3.0/msgl/tests/msgl_configuration_test.R | 2 msgl-2.3.0/msgl/tests/msgl_cv_test_1.R | 8 -- msgl-2.3.0/msgl/tests/msgl_cv_test_2.R | 8 -- msgl-2.3.0/msgl/tests/msgl_cv_test_3.R | 8 -- msgl-2.3.0/msgl/tests/msgl_cv_test_4.R | 9 -- msgl-2.3.0/msgl/tests/msgl_sub_test_1.R | 22 +++++- msgl-2.3.0/msgl/vignettes/quick-start.Rmd | 63 ++++++++++--------- 23 files changed, 301 insertions(+), 242 deletions(-)
Title: Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')
Description: Wrapper functions that interface with 'FSL' (http://
fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between fslr versions 1.9.2.1 dated 2016-09-06 and 2.0 dated 2016-09-28
fslr-1.9.2.1/fslr/R/applyEmptyImageDimensions.R |only fslr-1.9.2.1/fslr/R/breaker.R |only fslr-1.9.2.1/fslr/R/check_mask.R |only fslr-1.9.2.1/fslr/R/check_nifti.R |only fslr-1.9.2.1/fslr/R/check_outfile.R |only fslr-1.9.2.1/fslr/R/checkimg.R |only fslr-1.9.2.1/fslr/R/checknii.R |only fslr-1.9.2.1/fslr/R/checkniigz.R |only fslr-1.9.2.1/fslr/R/copyNIfTIHeader.R |only fslr-1.9.2.1/fslr/R/double_ortho.R |only fslr-1.9.2.1/fslr/R/dropEmptyImageDimensions.R |only fslr-1.9.2.1/fslr/R/file_imgext.R |only fslr-1.9.2.1/fslr/R/finite_img.R |only fslr-1.9.2.1/fslr/R/getEmptyImageDimensions.R |only fslr-1.9.2.1/fslr/R/maskEmptyImageDimensions.R |only fslr-1.9.2.1/fslr/R/mask_img.R |only fslr-1.9.2.1/fslr/R/niftiarr.R |only fslr-1.9.2.1/fslr/R/nii.stub.R |only fslr-1.9.2.1/fslr/R/ortho2.R |only fslr-1.9.2.1/fslr/R/ortho_diff.R |only fslr-1.9.2.1/fslr/R/overlay2.R |only fslr-1.9.2.1/fslr/R/parse_img_ext.R |only fslr-1.9.2.1/fslr/R/quantile_img.R |only fslr-1.9.2.1/fslr/R/readNIfTI2.R |only fslr-1.9.2.1/fslr/R/remake_img.R |only fslr-1.9.2.1/fslr/R/replace_dropped_dimensions.R |only fslr-1.9.2.1/fslr/R/rescale_img.R |only fslr-1.9.2.1/fslr/R/robust_window.R |only fslr-1.9.2.1/fslr/R/same_dims.R |only fslr-1.9.2.1/fslr/R/tempimg.R |only fslr-1.9.2.1/fslr/R/window_img.R |only fslr-1.9.2.1/fslr/R/writenii.R |only fslr-1.9.2.1/fslr/R/zero_pad.R |only fslr-1.9.2.1/fslr/R/zlimmer.R |only fslr-1.9.2.1/fslr/man/applyEmptyImageDimensions.Rd |only fslr-1.9.2.1/fslr/man/breaker.Rd |only fslr-1.9.2.1/fslr/man/check_mask.Rd |only fslr-1.9.2.1/fslr/man/check_mask_fail.Rd |only fslr-1.9.2.1/fslr/man/check_nifti-methods.Rd |only fslr-1.9.2.1/fslr/man/check_outfile.Rd |only fslr-1.9.2.1/fslr/man/checkimg-methods.Rd |only fslr-1.9.2.1/fslr/man/checknii-methods.Rd |only fslr-1.9.2.1/fslr/man/checkniigz-methods.Rd |only fslr-1.9.2.1/fslr/man/cog.Rd |only fslr-1.9.2.1/fslr/man/colorbar.Rd |only fslr-1.9.2.1/fslr/man/copyNIfTIHeader.Rd |only fslr-1.9.2.1/fslr/man/datatype.Rd |only fslr-1.9.2.1/fslr/man/double_ortho.Rd |only fslr-1.9.2.1/fslr/man/dropEmptyImageDimensions.Rd |only fslr-1.9.2.1/fslr/man/file_imgext.Rd |only fslr-1.9.2.1/fslr/man/finite_img-methods.Rd |only fslr-1.9.2.1/fslr/man/getEmptyImageDimensions.Rd |only fslr-1.9.2.1/fslr/man/maskEmptyImageDimensions.Rd |only fslr-1.9.2.1/fslr/man/mask_img.Rd |only fslr-1.9.2.1/fslr/man/multi_overlay.Rd |only fslr-1.9.2.1/fslr/man/newnii.Rd |only fslr-1.9.2.1/fslr/man/niftiarr.Rd |only fslr-1.9.2.1/fslr/man/nii.stub.Rd |only fslr-1.9.2.1/fslr/man/ortho2.Rd |only fslr-1.9.2.1/fslr/man/ortho_diff.Rd |only fslr-1.9.2.1/fslr/man/parse_img_ext.Rd |only fslr-1.9.2.1/fslr/man/quantile_img.Rd |only fslr-1.9.2.1/fslr/man/readNIfTI2.Rd |only fslr-1.9.2.1/fslr/man/remake_img.Rd |only fslr-1.9.2.1/fslr/man/replace_dropped_dimensions.Rd |only fslr-1.9.2.1/fslr/man/rescale_img.Rd |only fslr-1.9.2.1/fslr/man/robust_window.Rd |only fslr-1.9.2.1/fslr/man/same_dims.Rd |only fslr-1.9.2.1/fslr/man/tempimg.Rd |only fslr-1.9.2.1/fslr/man/window_img.Rd |only fslr-1.9.2.1/fslr/man/writeNIfTI2.Rd |only fslr-1.9.2.1/fslr/man/xyz.Rd |only fslr-1.9.2.1/fslr/man/zero_pad.Rd |only fslr-1.9.2.1/fslr/man/zlimmer.Rd |only fslr-1.9.2.1/fslr/man/zscore_img.Rd |only fslr-2.0/fslr/DESCRIPTION | 8 - fslr-2.0/fslr/MD5 | 104 +++----------------- fslr-2.0/fslr/NAMESPACE | 79 --------------- fslr-2.0/fslr/R/fsl_version.R |only fslr-2.0/fslr/R/fslhd.R | 64 +++--------- fslr-2.0/fslr/inst/CITATION |only fslr-2.0/fslr/inst/doc/dti_data.R | 5 fslr-2.0/fslr/inst/doc/dti_data.Rmd | 7 + fslr-2.0/fslr/inst/doc/dti_data.html | 17 ++- fslr-2.0/fslr/inst/doc/fslr.R | 5 fslr-2.0/fslr/inst/doc/fslr.Rmd | 10 + fslr-2.0/fslr/inst/doc/fslr.html | 46 ++++++++ fslr-2.0/fslr/man/fsl_version.Rd |only fslr-2.0/fslr/man/get.fsl.Rd | 3 fslr-2.0/fslr/man/have.fsl.Rd | 3 fslr-2.0/fslr/vignettes/dti_data.Rmd | 7 + fslr-2.0/fslr/vignettes/fslr.Rmd | 10 + 92 files changed, 148 insertions(+), 220 deletions(-)
Title: Wrapper Functions for 'Freesurfer'
Description: Wrapper functions that interface with 'Freesurfer' (https://
surfer.nmr.mgh.harvard.edu/), a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with
'Freesurfer' completely in R, where you pass R objects of class 'nifti',
implemented by package 'oro.nifti', and the function executes an 'Freesurfer'
command and returns an R object of class 'nifti' or necessary output.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between freesurfer versions 0.9.8 dated 2016-09-07 and 1.0 dated 2016-09-28
freesurfer-0.9.8/freesurfer/README.md |only freesurfer-1.0/freesurfer/DESCRIPTION | 22 +- freesurfer-1.0/freesurfer/MD5 | 90 ++++++++--- freesurfer-1.0/freesurfer/NAMESPACE | 40 ++++- freesurfer-1.0/freesurfer/R/aparcs_to_bg.R |only freesurfer-1.0/freesurfer/R/aparcstats2table.R | 30 --- freesurfer-1.0/freesurfer/R/asegstats2table.R | 3 freesurfer-1.0/freesurfer/R/check_fs_result.R |only freesurfer-1.0/freesurfer/R/checkmnc.R | 6 freesurfer-1.0/freesurfer/R/construct_subj_dir.R |only freesurfer-1.0/freesurfer/R/freesurfer_read3.R |only freesurfer-1.0/freesurfer/R/fs_cmd.R | 14 + freesurfer-1.0/freesurfer/R/fs_help.R | 5 freesurfer-1.0/freesurfer/R/fs_setup.R | 124 +++++++++++++--- freesurfer-1.0/freesurfer/R/fs_version.R |only freesurfer-1.0/freesurfer/R/mnc2nii.R | 5 freesurfer-1.0/freesurfer/R/mri_surf2surf.R |only freesurfer-1.0/freesurfer/R/mris_convert.R |only freesurfer-1.0/freesurfer/R/mris_euler_number.R |only freesurfer-1.0/freesurfer/R/nii2mnc.R | 11 - freesurfer-1.0/freesurfer/R/nu_correct.R | 9 - freesurfer-1.0/freesurfer/R/read_aseg_stats.R |only freesurfer-1.0/freesurfer/R/read_fs_table.R | 4 freesurfer-1.0/freesurfer/R/recon.R | 9 - freesurfer-1.0/freesurfer/R/recon_all.R | 2 freesurfer-1.0/freesurfer/R/recon_manual.R | 54 ++++++ freesurfer-1.0/freesurfer/R/reconner.R | 9 - freesurfer-1.0/freesurfer/R/run_check_fs_cmd.R |only freesurfer-1.0/freesurfer/R/surf_convert.R |only freesurfer-1.0/freesurfer/R/trac_all.R |only freesurfer-1.0/freesurfer/R/trac_manual.R |only freesurfer-1.0/freesurfer/R/tracker.R |only freesurfer-1.0/freesurfer/inst |only freesurfer-1.0/freesurfer/man/aparcs_to_bg.Rd |only freesurfer-1.0/freesurfer/man/aparcstats2table.Rd | 1 freesurfer-1.0/freesurfer/man/check_fs_result.Rd |only freesurfer-1.0/freesurfer/man/construct_subj_dir.Rd |only freesurfer-1.0/freesurfer/man/freesurfer_read3.Rd |only freesurfer-1.0/freesurfer/man/freesurfer_read3_con.Rd |only freesurfer-1.0/freesurfer/man/freesurfer_read_curv.Rd |only freesurfer-1.0/freesurfer/man/freesurfer_read_surf.Rd |only freesurfer-1.0/freesurfer/man/freesurferdir.Rd | 3 freesurfer-1.0/freesurfer/man/fs_cmd.Rd | 7 freesurfer-1.0/freesurfer/man/fs_help.Rd | 4 freesurfer-1.0/freesurfer/man/fs_subj_dir.Rd |only freesurfer-1.0/freesurfer/man/fs_version.Rd |only freesurfer-1.0/freesurfer/man/get_fs.Rd | 8 - freesurfer-1.0/freesurfer/man/mri_surf2surf.Rd |only freesurfer-1.0/freesurfer/man/mri_surf2surf.help.Rd |only freesurfer-1.0/freesurfer/man/mris_convert.Rd |only freesurfer-1.0/freesurfer/man/mris_convert.help.Rd |only freesurfer-1.0/freesurfer/man/mris_euler_number.Rd |only freesurfer-1.0/freesurfer/man/mris_euler_number.help.Rd |only freesurfer-1.0/freesurfer/man/nii2mnc.help.Rd | 2 freesurfer-1.0/freesurfer/man/read_aseg_stats.Rd |only freesurfer-1.0/freesurfer/man/read_fs_table.Rd | 5 freesurfer-1.0/freesurfer/man/recon.Rd | 17 +- freesurfer-1.0/freesurfer/man/recon_manual.Rd | 15 + freesurfer-1.0/freesurfer/man/reconner.Rd | 2 freesurfer-1.0/freesurfer/man/run_check_fs_cmd.Rd |only freesurfer-1.0/freesurfer/man/set_fs_subj_dir.Rd |only freesurfer-1.0/freesurfer/man/surf_convert.Rd |only freesurfer-1.0/freesurfer/man/trac_all.Rd |only freesurfer-1.0/freesurfer/man/trac_manual.Rd |only freesurfer-1.0/freesurfer/man/tracker.Rd |only 65 files changed, 357 insertions(+), 144 deletions(-)
Title: Create Cartograms with R
Description: Construct continuous and non-contiguous area cartograms.
Author: Sebastian Jeworutzki [aut, cre],
Timothee Giraud [ctb],
Nicolas Lambert [ctb],
Roger Bivand [cph],
Edzer Pebesma [cph]
Maintainer: Sebastian Jeworutzki <sebastian.jeworutzki@ruhr-uni-bochum.de>
Diff between cartogram versions 0.0.1 dated 2016-08-30 and 0.0.2 dated 2016-09-28
DESCRIPTION | 25 +++- MD5 | 13 +- NAMESPACE | 8 - R/cartogram.R | 238 +++++++++++++++++++++++++++++++++++++++-------- R/nc_cartogram.R |only README.md | 57 +++++++++++ man/cartogram.Rd | 12 +- man/checkPolygonsGEOS.Rd |only man/nc_cartogram.Rd |only 9 files changed, 296 insertions(+), 57 deletions(-)
Title: Matrices Backed by Binary PED Files (PLINK)
Description: A matrix-like data structure that allows for efficient,
convenient, and scalable subsetting of binary genotype/phenotype files
generated by PLINK (http://pngu.mgh.harvard.edu/~purcell/plink/), the whole
genome association analysis toolset, without loading the entire file into
memory.
Author: Alexander Grueneberg [aut, cre],
Lian Lian [ctb],
Gustavo de los Campos [ctb]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>
Diff between BEDMatrix versions 1.2.0 dated 2016-03-04 and 1.3.0 dated 2016-09-28
BEDMatrix-1.2.0/BEDMatrix/inst/extdata/standalone.bed |only BEDMatrix-1.3.0/BEDMatrix/DESCRIPTION | 8 - BEDMatrix-1.3.0/BEDMatrix/MD5 | 19 +- BEDMatrix-1.3.0/BEDMatrix/NAMESPACE | 1 BEDMatrix-1.3.0/BEDMatrix/NEWS.md | 10 + BEDMatrix-1.3.0/BEDMatrix/R/BEDMatrix.R | 103 ++++++++------ BEDMatrix-1.3.0/BEDMatrix/README.md | 21 +- BEDMatrix-1.3.0/BEDMatrix/man/BEDMatrix.Rd | 39 +++-- BEDMatrix-1.3.0/BEDMatrix/man/examples |only BEDMatrix-1.3.0/BEDMatrix/src/BEDMatrix.cpp | 47 +++--- BEDMatrix-1.3.0/BEDMatrix/tests/testthat/standalone.bed |only BEDMatrix-1.3.0/BEDMatrix/tests/testthat/test-BEDMatrix.R | 15 +- 12 files changed, 168 insertions(+), 95 deletions(-)
Title: Assigning Ancestry Based on Population References
Description: Assigns genetic ancestry to an individual and
studies relationships between local and global populations.
Author: Tiago R Magalhaes, Eoghan T O'Halloran
Maintainer: Eoghan T O'Halloran <eoghan.ohalloran2@mail.dcu.ie>
Diff between AncestryMapper versions 1.2 dated 2015-02-03 and 2.0 dated 2016-09-28
AncestryMapper-1.2/AncestryMapper/R/CalculateAMIds.R |only AncestryMapper-1.2/AncestryMapper/R/plotAMids.R |only AncestryMapper-1.2/AncestryMapper/inst/doc/AncestryMapper1.2.Rmd |only AncestryMapper-1.2/AncestryMapper/inst/doc/AncestryMapper1.2.html |only AncestryMapper-1.2/AncestryMapper/inst/doc/AncestryMapper_tutorial_1.2.pdf |only AncestryMapper-1.2/AncestryMapper/inst/extdata/HGDP.500SNPs.ped |only AncestryMapper-1.2/AncestryMapper/inst/extdata/HGDP.Phenotypes.txt |only AncestryMapper-1.2/AncestryMapper/inst/extdata/HGDP.References.txt |only AncestryMapper-1.2/AncestryMapper/vignettes/AncestryMapper1.2.Rmd |only AncestryMapper-2.0/AncestryMapper/DESCRIPTION | 21 - AncestryMapper-2.0/AncestryMapper/MD5 | 196 +++++++++- AncestryMapper-2.0/AncestryMapper/NAMESPACE | 16 AncestryMapper-2.0/AncestryMapper/NEWS |only AncestryMapper-2.0/AncestryMapper/R/CorphenoMaker.R |only AncestryMapper-2.0/AncestryMapper/R/Plot_AncestryMapper.R |only AncestryMapper-2.0/AncestryMapper/R/R_AMids_distanceToArithmeticMedoids_SingleMedoids.R |only AncestryMapper-2.0/AncestryMapper/R/R_CalculateAMIds.R |only AncestryMapper-2.0/AncestryMapper/R/R_CreateMedoids.R |only AncestryMapper-2.0/AncestryMapper/build/vignette.rds |binary AncestryMapper-2.0/AncestryMapper/data |only AncestryMapper-2.0/AncestryMapper/inst/doc/AncestryMapper2.0.R |only AncestryMapper-2.0/AncestryMapper/inst/doc/AncestryMapper2.0.Rmd |only AncestryMapper-2.0/AncestryMapper/inst/doc/AncestryMapper2.0.html |only AncestryMapper-2.0/AncestryMapper/inst/doc/AncestryMapper_tutorial_2.0.pdf |only AncestryMapper-2.0/AncestryMapper/inst/extdata/All-00.bed |only AncestryMapper-2.0/AncestryMapper/inst/extdata/All-00.bim |only AncestryMapper-2.0/AncestryMapper/inst/extdata/All-00.fam |only AncestryMapper-2.0/AncestryMapper/inst/extdata/CorPheno |only AncestryMapper-2.0/AncestryMapper/inst/extdata/Demo.snplist |only AncestryMapper-2.0/AncestryMapper/inst/extdata/Demo.tfam |only AncestryMapper-2.0/AncestryMapper/inst/extdata/Demo.tped |only AncestryMapper-2.0/AncestryMapper/inst/extdata/Example.phenoId |only AncestryMapper-2.0/AncestryMapper/inst/extdata/Example.phenoValues |only AncestryMapper-2.0/AncestryMapper/inst/extdata/HGDP_500SNPs.ped |only AncestryMapper-2.0/AncestryMapper/inst/extdata/HGDP_References.txt |only AncestryMapper-2.0/AncestryMapper/inst/extdata/IndRm |only AncestryMapper-2.0/AncestryMapper/inst/extdata/Prep.bed |only AncestryMapper-2.0/AncestryMapper/inst/extdata/Prep.bim |only AncestryMapper-2.0/AncestryMapper/inst/extdata/Prep.fam |only AncestryMapper-2.0/AncestryMapper/man/AncestryMapper2.0-package.Rd |only AncestryMapper-2.0/AncestryMapper/man/MinMaxFreq.Rd |only AncestryMapper-2.0/AncestryMapper/man/arithmeticRefsMedoids.Rd |only AncestryMapper-2.0/AncestryMapper/man/calculateAMids.Rd | 40 +- AncestryMapper-2.0/AncestryMapper/man/calculateAMidsArith.Rd |only AncestryMapper-2.0/AncestryMapper/man/createMedoid.Rd |only AncestryMapper-2.0/AncestryMapper/man/plotAMids.Rd | 81 ++-- AncestryMapper-2.0/AncestryMapper/man/refAdd.Rd |only AncestryMapper-2.0/AncestryMapper/vignettes/AncestryMapper2.0.Rmd |only AncestryMapper-2.0/AncestryMapper/vignettes/index.html |only 49 files changed, 283 insertions(+), 71 deletions(-)
More information about AncestryMapper at CRAN
Permanent link
Title: Wrapper Functions for 'SPM' (Statistical Parametric Mapping)
Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'
Description: Installs 'SPM12' to the R library directory and has associated
functions for 'fMRI' and general imaging utilities, called through 'MATLAB'.
Author: John Muschelli
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between spm12r versions 1.1.1 dated 2015-11-03 and 2.0 dated 2016-09-28
DESCRIPTION | 18 +++--- MD5 | 80 +++++++++++++++--------------- NAMESPACE | 24 ++++++--- R/acpc_reorient.R | 52 +++++++++----------- R/bwconncomp.R |only R/check_filename.R | 4 - R/group_xyz.R | 18 +++--- R/install_spm12.R | 15 +++-- R/ntime_points.R | 2 R/run_spm12_script.R | 9 +-- R/spm12_coregister.R | 46 ++++++++--------- R/spm12_normalize.R | 31 +++++------- R/spm12_normalize_est.R | 16 ++---- R/spm12_normalize_write.R | 32 +++++------- R/spm12_realign.R | 70 +++++++++++++-------------- R/spm12_realign_est.R | 56 ++++++++++----------- R/spm12_script.R | 18 +++--- R/spm12_segment.R | 2 R/spm12_slice_timing.R | 111 ++++++++++++++++++++++++------------------- R/spm12_smooth.R | 20 +++---- R/spm_bwlabel.R | 13 ++--- R/spm_probs_to_seg.R | 4 - man/acpc_reorient.Rd | 8 +-- man/bwconncomp.Rd |only man/filename_check.Rd | 2 man/group_xyz.Rd | 2 man/install_spm12.Rd | 8 ++- man/ntime_points.Rd | 2 man/run_spm12_script.Rd | 4 - man/spm12_coregister.Rd | 2 man/spm12_normalize.Rd | 2 man/spm12_normalize_est.Rd | 2 man/spm12_normalize_write.Rd | 2 man/spm12_realign.Rd | 2 man/spm12_realign_est.Rd | 2 man/spm12_script.Rd | 2 man/spm12_segment.Rd | 4 - man/spm12_slice_timing.Rd | 2 man/spm12_smooth.Rd | 2 man/spm_bwlabel.Rd | 6 +- man/spm_dir.Rd | 2 man/spm_probs_to_seg.Rd | 8 +-- 42 files changed, 366 insertions(+), 339 deletions(-)
Title: Generic Sparse Group Lasso Solver
Description: Fast generic solver for sparse group lasso optimization
problems. The loss (objective) function must be defined in a C++ module.
The optimization problem is solved using a coordinate gradient
descent algorithm. The algorithm is applicable to a broad class of convex
loss functions. Convergence of the algorithm is established (see reference). Use of parallel computing for cross validation and subsampling is supported through
the 'foreach' and 'doParallel' packages. Development version is on github, please report package issues on github. Development version is on github, please report package issues on github.
Author: Martin Vincent
Maintainer: Martin Vincent <martin.vincent.dk@gmail.com>
Diff between sglOptim versions 1.2.2 dated 2016-09-10 and 1.3.0 dated 2016-09-28
sglOptim-1.2.2/sglOptim/inst/include/sgl/subsampling.h |only sglOptim-1.2.2/sglOptim/tests/G_openmp_test.R |only sglOptim-1.3.0/sglOptim/DESCRIPTION | 21 - sglOptim-1.3.0/sglOptim/MD5 | 67 ++-- sglOptim-1.3.0/sglOptim/NAMESPACE | 8 sglOptim-1.3.0/sglOptim/R/prepare_args.R | 97 +++++ sglOptim-1.3.0/sglOptim/R/sgl_cv.R | 89 +++-- sglOptim-1.3.0/sglOptim/R/sgl_navigate.R | 4 sglOptim-1.3.0/sglOptim/R/sgl_subsampling.R | 164 +++++++++- sglOptim-1.3.0/sglOptim/R/startup.R | 9 sglOptim-1.3.0/sglOptim/inst/NEWS.Rd | 3 sglOptim-1.3.0/sglOptim/inst/include/rtools/get_value.h | 41 -- sglOptim-1.3.0/sglOptim/inst/include/rtools/rObject_def.h | 29 + sglOptim-1.3.0/sglOptim/inst/include/sgl.h | 18 - sglOptim-1.3.0/sglOptim/inst/include/sgl/RInterface/sgl_subsampling.h | 90 ++--- sglOptim-1.3.0/sglOptim/inst/include/sgl/RInterface/sgl_test.h | 34 +- sglOptim-1.3.0/sglOptim/inst/include/sgl/interface_basic.h | 111 ++++-- sglOptim-1.3.0/sglOptim/inst/include/sgl/objective/sgl_matrix_data.h | 24 - sglOptim-1.3.0/sglOptim/inst/include/sgl/sgl_optimizer.h | 2 sglOptim-1.3.0/sglOptim/inst/include/sgl/sgl_tester.h | 2 sglOptim-1.3.0/sglOptim/man/create.sgldata.Rd | 3 sglOptim-1.3.0/sglOptim/man/prepare.args.Rd | 3 sglOptim-1.3.0/sglOptim/man/prepare.args.sgldata.Rd | 7 sglOptim-1.3.0/sglOptim/man/rearrange.sgldata.Rd | 3 sglOptim-1.3.0/sglOptim/man/sgl_cv.Rd | 11 sglOptim-1.3.0/sglOptim/man/sgl_subsampling.Rd | 9 sglOptim-1.3.0/sglOptim/man/subsample.Rd |only sglOptim-1.3.0/sglOptim/man/subsample.sgldata.Rd |only sglOptim-1.3.0/sglOptim/src/pkg_c_config.h | 7 sglOptim-1.3.0/sglOptim/tests/D_cv_test_1.R | 7 sglOptim-1.3.0/sglOptim/tests/D_cv_test_2.R | 8 sglOptim-1.3.0/sglOptim/tests/D_cv_test_3.R | 8 sglOptim-1.3.0/sglOptim/tests/D_cv_test_4.R | 6 sglOptim-1.3.0/sglOptim/tests/E_subsampling_test_1.R | 4 sglOptim-1.3.0/sglOptim/tests/E_subsampling_test_2.R | 4 sglOptim-1.3.0/sglOptim/tests/E_subsampling_test_3.R | 4 sglOptim-1.3.0/sglOptim/tests/G_parallel_test.R |only 37 files changed, 548 insertions(+), 349 deletions(-)
Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction risk of species according to the IUCN (International Union for Conservation of Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between red versions 0.1.0 dated 2016-08-23 and 0.1.1 dated 2016-09-28
DESCRIPTION | 12 ++-- MD5 | 34 ++++++------ NAMESPACE | 2 R/red.R | 138 +++++++++++++++++++++++++------------------------- data/data.records.rda |binary data/data.sp.rda |binary man/aoo.Rd | 8 +- man/eoo.Rd | 2 man/kml.Rd | 2 man/map.draw.Rd | 6 +- man/map.easy.Rd | 2 man/map.habitat.Rd | 2 man/map.points.Rd | 4 - man/map.sdm.Rd | 4 - man/outliers.Rd | 2 man/raster.reduce.Rd | 6 +- man/red.setup.Rd | 6 +- man/thin.Rd | 2 18 files changed, 116 insertions(+), 116 deletions(-)
Title: Estimate Quantitative Genetics Parameters from Generalised
Linear Mixed Models
Description: Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observed phenotypic mean, phenotypic variance and additive genetic variance.
Author: Pierre de Villemereuil <bonamy@horus.ens.fr>
Maintainer: Pierre de Villemereuil <bonamy@horus.ens.fr>
Diff between QGglmm versions 0.4 dated 2016-07-13 and 0.5 dated 2016-09-28
DESCRIPTION | 8 ++-- MD5 | 51 +++++++++++++++++++++---------- NAMESPACE | 2 - NEWS.md |only R/source.R | 84 ++++++++++++++++++++++++++++++---------------------- R/source.icc.R |only R/source.mv.R | 28 +++++++++-------- R/source.ordinal.R |only README.md | 11 +++++- build |only inst/doc |only man/QGicc.Rd |only man/QGlink.funcs.Rd | 2 - man/QGmean.Rd | 8 ++-- man/QGmvicc.Rd |only man/QGmvmean.Rd | 4 +- man/QGmvparams.Rd | 4 +- man/QGmvpred.Rd | 4 +- man/QGmvpsi.Rd | 4 +- man/QGparams.Rd | 30 +++++++++++++----- man/QGpred.Rd | 10 +++--- man/QGpsi.Rd | 8 ++-- man/QGvar.dist.Rd | 8 ++-- man/QGvar.exp.Rd | 8 ++-- man/QGvcov.Rd | 4 +- vignettes |only 26 files changed, 167 insertions(+), 111 deletions(-)
Title: Methods for Graphical Models and Causal Inference
Description: Functions for causal structure
learning and causal inference using graphical models. The main algorithms
for causal structure learning are PC (for observational data without hidden
variables), FCI and RFCI (for observational data with hidden variables),
and GIES (for a mix of data from observational studies
(i.e. observational data) and data from experiments
involving interventions (i.e. interventional data) without hidden
variables). For causal inference the IDA algorithm, the Generalized
Backdoor Criterion (GBC) and the Generalized Adjustment Criterion (GAC)
are implemented.
Author: Markus Kalisch [aut, cre], Alain Hauser [aut], Martin Maechler [aut],
Diego Colombo [ctb], Doris Entner [ctb], Patrik Hoyer [ctb], Antti Hyttinen [ctb],
Jonas Peters [ctb], Nicoletta Andri [ctb], Emilija Perkovic [ctb], Preetam Nandy [ctb],
Philipp Ruetimann [ctb], Daniel Stekhoven [ctb], Manuel Schuerch [ctb]
Maintainer: Markus Kalisch <kalisch@stat.math.ethz.ch>
Diff between pcalg versions 2.4-2 dated 2016-09-26 and 2.4-3 dated 2016-09-28
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ build/vignette.rds |binary inst/doc/pcalgDoc.pdf |binary man/unifDAG.Rd | 10 +++++----- tests/test_gSquareBin.R | 6 +++--- vignettes/Mybib.bib | 2 +- 7 files changed, 18 insertions(+), 18 deletions(-)
Title: View Medical Research Images using the Papaya JavaScript Library
Description: Users pass images and objects of class 'nifti' from the 'oro.nifti'
package to a Papaya, an interactive lightweight JavaScript viewer.
Although many packages can view individual slices or projections of
image and matrix data, this package allows for quick and easy
interactive browsing of images. The viewer is based off of the
Mango software, which is a lightweight medical image viewer.
Author: John Muschelli
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between papayar versions 0.0.3 dated 2016-05-12 and 1.0 dated 2016-09-28
DESCRIPTION | 12 MD5 | 18 NAMESPACE | 3 R/embed_papaya.R | 12 R/papaya.R | 4 R/papaya_div.R |only inst/index.html | 5 inst/papaya.css | 2 inst/papaya.js | 3199 ++++++++++++++++++++++++++++-------------------------- man/papaya.Rd | 2 man/papaya_div.Rd |only 11 files changed, 1707 insertions(+), 1550 deletions(-)
Title: Chinese Text Segmentation
Description: Chinese text segmentation, keyword extraction and speech tagging
For R.
Author: Qin Wenfeng, and the authors of CppJieba for the included version of
CppJieba
Maintainer: Qin Wenfeng <mail@qinwenfeng.com>
Diff between jiebaR versions 0.8.1 dated 2016-04-18 and 0.9.1 dated 2016-09-28
jiebaR-0.8.1/jiebaR/man/filecoding.Rd |only jiebaR-0.8.1/jiebaR/vignettes/mystyle.css |only jiebaR-0.9.1/jiebaR/DESCRIPTION | 10 jiebaR-0.9.1/jiebaR/MD5 | 126 +- jiebaR-0.9.1/jiebaR/NAMESPACE | 109 +- jiebaR-0.9.1/jiebaR/NEWS | 188 ++- jiebaR-0.9.1/jiebaR/R/RcppExports.R | 271 ++--- jiebaR-0.9.1/jiebaR/R/dict_tools.R | 114 +- jiebaR-0.9.1/jiebaR/R/filter.R | 92 - jiebaR-0.9.1/jiebaR/R/gen_idf.R | 59 - jiebaR-0.9.1/jiebaR/R/get_tuple.R | 62 - jiebaR-0.9.1/jiebaR/R/ham_dist.R |only jiebaR-0.9.1/jiebaR/R/jiebaR-package.r | 105 +- jiebaR-0.9.1/jiebaR/R/keywords.R | 203 +-- jiebaR-0.9.1/jiebaR/R/quick.R | 8 jiebaR-0.9.1/jiebaR/R/segment.R | 481 ++++----- jiebaR-0.9.1/jiebaR/R/simhash.R | 418 ++++---- jiebaR-0.9.1/jiebaR/R/tagger.R | 490 +++++---- jiebaR-0.9.1/jiebaR/R/util.R |only jiebaR-0.9.1/jiebaR/R/worker.R | 460 ++++----- jiebaR-0.9.1/jiebaR/R/worker_func.R | 96 + jiebaR-0.9.1/jiebaR/README.md | 8 jiebaR-0.9.1/jiebaR/build/vignette.rds |binary jiebaR-0.9.1/jiebaR/inst/doc/Quick_Start_Guide.R |only jiebaR-0.9.1/jiebaR/inst/doc/Quick_Start_Guide.Rmd | 350 +++--- jiebaR-0.9.1/jiebaR/inst/doc/Quick_Start_Guide.html | 511 +++++----- jiebaR-0.9.1/jiebaR/inst/include/lib/Jieba.hpp | 3 jiebaR-0.9.1/jiebaR/inst/include/lib/PosTagger.hpp | 19 jiebaR-0.9.1/jiebaR/inst/include/segtype-v4.hpp | 45 jiebaR-0.9.1/jiebaR/man/DICTPATH.Rd | 56 - jiebaR-0.9.1/jiebaR/man/apply_list.Rd |only jiebaR-0.9.1/jiebaR/man/distance.Rd | 89 - jiebaR-0.9.1/jiebaR/man/edit_dict.Rd | 66 - jiebaR-0.9.1/jiebaR/man/file_coding.Rd |only jiebaR-0.9.1/jiebaR/man/filter_segment.Rd | 46 jiebaR-0.9.1/jiebaR/man/freq.Rd | 48 jiebaR-0.9.1/jiebaR/man/get_idf.Rd | 55 - jiebaR-0.9.1/jiebaR/man/get_tuple.Rd | 44 jiebaR-0.9.1/jiebaR/man/jiebaR.Rd | 130 +- jiebaR-0.9.1/jiebaR/man/keywords.Rd | 89 - jiebaR-0.9.1/jiebaR/man/less-than-equals-.keywords.Rd | 58 - jiebaR-0.9.1/jiebaR/man/less-than-equals-.qseg.Rd | 118 +- jiebaR-0.9.1/jiebaR/man/less-than-equals-.segment.Rd | 58 - jiebaR-0.9.1/jiebaR/man/less-than-equals-.simhash.Rd | 58 - jiebaR-0.9.1/jiebaR/man/less-than-equals-.tagger.Rd | 58 - jiebaR-0.9.1/jiebaR/man/new_user_word.Rd | 43 jiebaR-0.9.1/jiebaR/man/print.jieba.Rd | 64 - jiebaR-0.9.1/jiebaR/man/query_threshold.Rd | 34 jiebaR-0.9.1/jiebaR/man/segment.Rd | 107 +- jiebaR-0.9.1/jiebaR/man/set_qsegmodel.Rd | 99 - jiebaR-0.9.1/jiebaR/man/show_dictpath.Rd | 34 jiebaR-0.9.1/jiebaR/man/simhash.Rd | 89 - jiebaR-0.9.1/jiebaR/man/simhash_dist.Rd |only jiebaR-0.9.1/jiebaR/man/tagging.Rd | 84 - jiebaR-0.9.1/jiebaR/man/tobin.Rd | 30 jiebaR-0.9.1/jiebaR/man/vector_tag.Rd |only jiebaR-0.9.1/jiebaR/man/words_locate.Rd | 43 jiebaR-0.9.1/jiebaR/man/worker.Rd | 316 +++--- jiebaR-0.9.1/jiebaR/src/RcppExports.cpp | 276 +++-- jiebaR-0.9.1/jiebaR/src/detect.cpp | 481 ++++----- jiebaR-0.9.1/jiebaR/src/get_idf.cpp | 2 jiebaR-0.9.1/jiebaR/src/init.c | 13 jiebaR-0.9.1/jiebaR/src/segtype-v4.cpp | 33 jiebaR-0.9.1/jiebaR/src/util.cpp |only jiebaR-0.9.1/jiebaR/tests/testthat/CPP_API/tests/testthat/test-cpp.R | 166 +-- jiebaR-0.9.1/jiebaR/tests/testthat/C_API/tests/testthat/test-c.R | 172 +-- jiebaR-0.9.1/jiebaR/tests/testthat/test-api.R | 46 jiebaR-0.9.1/jiebaR/tests/testthat/test-cut.R | 134 +- jiebaR-0.9.1/jiebaR/vignettes/Quick_Start_Guide.Rmd | 350 +++--- 69 files changed, 4049 insertions(+), 3768 deletions(-)
Title: A Most Informative Histogram-Like Model
Description: Using the MDL principle, it is possible to estimate
parameters for a histogram-like model. The package contains
the implementation of such an estimation method.
Author: Jouke Witteveen
Maintainer: Jouke Witteveen <j.witteveen@gmail.com>
Diff between histmdl versions 0.5-1 dated 2016-01-26 and 0.6-1 dated 2016-09-28
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/histmdl.R | 35 +++++++++++++++++++++-------------- 3 files changed, 27 insertions(+), 20 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-26 0.1.0
Title: Run 'R CMD check' from 'R' and Capture Results
Description: Run 'R CMD check' from 'R' programmatically, and capture the
results of the individual checks.
Author: Gabor Csardi
Maintainer: Gabor Csardi <gcsardi@mango-solutions.com>
Diff between rcmdcheck versions 1.1.0 dated 2016-04-16 and 1.2.1 dated 2016-09-28
rcmdcheck-1.1.0/rcmdcheck/R/R.R |only rcmdcheck-1.1.0/rcmdcheck/R/safe_check.R |only rcmdcheck-1.1.0/rcmdcheck/R/safe_system.R |only rcmdcheck-1.2.1/rcmdcheck/DESCRIPTION | 10 - rcmdcheck-1.2.1/rcmdcheck/MD5 | 32 +++-- rcmdcheck-1.2.1/rcmdcheck/NAMESPACE | 12 ++ rcmdcheck-1.2.1/rcmdcheck/R/build.R | 12 -- rcmdcheck-1.2.1/rcmdcheck/R/callback.R | 4 rcmdcheck-1.2.1/rcmdcheck/R/compare.R |only rcmdcheck-1.2.1/rcmdcheck/R/cran.R |only rcmdcheck-1.2.1/rcmdcheck/R/error.R |only rcmdcheck-1.2.1/rcmdcheck/R/package.R | 17 +-- rcmdcheck-1.2.1/rcmdcheck/R/parse.R | 102 ++++++++++++++++++- rcmdcheck-1.2.1/rcmdcheck/R/print.R | 57 ++++++++-- rcmdcheck-1.2.1/rcmdcheck/R/utils.R | 98 ++++++++++++++---- rcmdcheck-1.2.1/rcmdcheck/inst/NEWS.md | 21 +++ rcmdcheck-1.2.1/rcmdcheck/man/compare_checks.Rd |only rcmdcheck-1.2.1/rcmdcheck/man/compare_to_cran.Rd |only rcmdcheck-1.2.1/rcmdcheck/man/cran_check_flavours.Rd |only rcmdcheck-1.2.1/rcmdcheck/man/cran_check_results.Rd |only rcmdcheck-1.2.1/rcmdcheck/man/data_frame.Rd |only rcmdcheck-1.2.1/rcmdcheck/man/myrep.Rd |only rcmdcheck-1.2.1/rcmdcheck/man/parse_check.Rd |only rcmdcheck-1.2.1/rcmdcheck/man/parse_check_url.Rd |only 24 files changed, 298 insertions(+), 67 deletions(-)
Title: Circos 2D Track Plot
Description: A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.
Author: Hongen Zhang
Maintainer: Hongen Zhang <hzhang.henry@gmail.com>
Diff between RCircos versions 1.1.3 dated 2015-12-14 and 1.2.0 dated 2016-09-28
RCircos-1.1.3/RCircos/R/RCircos.R |only RCircos-1.1.3/RCircos/demo/RCircos.Tick.Demo.R |only RCircos-1.1.3/RCircos/man/RCircos.Add.Ideogram.Tick.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Get.Heatmap.ColorScales.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Get.Plot.Data.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Get.Plot.Ideogram.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Get.Plot.Parameters.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Get.Plot.Positions.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Initialize.Parameters.Rd |only RCircos-1.1.3/RCircos/man/RCircos.List.Parameters.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Reset.Plot.Ideogram.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Reset.Plot.Parameters.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Reset.Plot.Positions.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Set.Cytoband.data.Rd |only RCircos-1.1.3/RCircos/man/RCircos.Track.Positions.Rd |only RCircos-1.2.0/RCircos/DESCRIPTION | 10 RCircos-1.2.0/RCircos/MD5 | 182 +- RCircos-1.2.0/RCircos/NAMESPACE | 3 RCircos-1.2.0/RCircos/R/RCircosChromosomeIdeogram.R |only RCircos-1.2.0/RCircos/R/RCircosGenomicData.R |only RCircos-1.2.0/RCircos/R/RCircosHeatmap.R |only RCircos-1.2.0/RCircos/R/RCircosMain.R |only RCircos-1.2.0/RCircos/R/RCircosPlotDataTracks.R |only RCircos-1.2.0/RCircos/R/RCircosPlotParameters.R |only RCircos-1.2.0/RCircos/R/RCircosPlotPositions.R |only RCircos-1.2.0/RCircos/R/RCircosZoomPlot.R |only RCircos-1.2.0/RCircos/data/RCircos.Polygon.Data.RData |only RCircos-1.2.0/RCircos/data/UCSC.Baylor.3.4.Rat.cytoBandIdeogram.RData |binary RCircos-1.2.0/RCircos/data/UCSC.HG19.Human.CytoBandIdeogram.RData |binary RCircos-1.2.0/RCircos/data/UCSC.HG38.Human.CytoBandIdeogram.RData |only RCircos-1.2.0/RCircos/data/UCSC.Mouse.GRCm38.CytoBandIdeogram.RData |binary RCircos-1.2.0/RCircos/demo/00Index | 5 RCircos-1.2.0/RCircos/demo/RCircos.Area.Plot.Demo.R |only RCircos-1.2.0/RCircos/demo/RCircos.Chromosome.Tick.Demo.R |only RCircos-1.2.0/RCircos/demo/RCircos.Demo.Human.R | 206 +- RCircos-1.2.0/RCircos/demo/RCircos.Demo.Mouse.And.Rat.R | 132 - RCircos-1.2.0/RCircos/demo/RCircos.Gene.Connector.Demo.R | 88 - RCircos-1.2.0/RCircos/demo/RCircos.Heatmap.Demo.R | 62 RCircos-1.2.0/RCircos/demo/RCircos.Histogram.Demo.R | 57 RCircos-1.2.0/RCircos/demo/RCircos.Layout.Demo.R | 84 - RCircos-1.2.0/RCircos/demo/RCircos.Line.Plot.Demo.R | 59 RCircos-1.2.0/RCircos/demo/RCircos.Link.Plot.Demo.R | 59 RCircos-1.2.0/RCircos/demo/RCircos.Polygon.Plot.Demo.R |only RCircos-1.2.0/RCircos/demo/RCircos.Ribbon.Plot.Demo.R | 55 RCircos-1.2.0/RCircos/demo/RCircos.Scatter.Plot.Demo.R | 60 RCircos-1.2.0/RCircos/demo/RCircos.Tile.Plot.Demo.R | 58 RCircos-1.2.0/RCircos/demo/RCircos.Zoom.Plot.Demo.R |only RCircos-1.2.0/RCircos/inst/doc/RCircos-manual.pdf |binary RCircos-1.2.0/RCircos/inst/doc/Using_RCircos.R | 50 RCircos-1.2.0/RCircos/inst/doc/Using_RCircos.Rnw | 802 +++++----- RCircos-1.2.0/RCircos/inst/doc/Using_RCircos.pdf |binary RCircos-1.2.0/RCircos/man/RCircos-package.Rd | 10 RCircos-1.2.0/RCircos/man/RCircos.Adjust.Scatter.Values.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Area.Highlight.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Area.Plot.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Chromosome.Ideogram.Plot.Rd | 89 - RCircos-1.2.0/RCircos/man/RCircos.Clear.Track.Rd | 87 - RCircos-1.2.0/RCircos/man/RCircos.Clear.Zoom.Area.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Customized.Shape.Plot.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Data.Point.Rd | 12 RCircos-1.2.0/RCircos/man/RCircos.Env.Rd | 6 RCircos-1.2.0/RCircos/man/RCircos.Gene.Connector.Plot.Rd | 67 RCircos-1.2.0/RCircos/man/RCircos.Gene.Name.Plot.Rd | 77 RCircos-1.2.0/RCircos/man/RCircos.Get.Arrow.Shape.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Chromosome.Order.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Core.Components.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Data.Point.Height.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Default.Parameters.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Gene.Label.Locations.Rd | 22 RCircos-1.2.0/RCircos/man/RCircos.Get.Gene.Name.Plot.Parameters.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Heatmap.Color.Scale.Location.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Heatmap.Color.Scale.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Heatmap.Data.Colors.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Link.Colors.Rd | 7 RCircos-1.2.0/RCircos/man/RCircos.Get.Paired.Points.Positions.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Plot.Boundary.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Plot.Colors.Rd | 2 RCircos-1.2.0/RCircos/man/RCircos.Get.Plot.Layers.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Polygon.Height.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Single.Point.Positions.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Start.End.Locations.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Track.Positions.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Zoom.Data.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Get.Zoom.Range.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Heatmap.Plot.Rd | 88 - RCircos-1.2.0/RCircos/man/RCircos.Histogram.Plot.Rd | 83 - RCircos-1.2.0/RCircos/man/RCircos.Initialize.Plot.Parameters.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Line.Plot.Rd | 85 - RCircos-1.2.0/RCircos/man/RCircos.Link.Line.Rd | 7 RCircos-1.2.0/RCircos/man/RCircos.Link.Plot.Rd | 71 RCircos-1.2.0/RCircos/man/RCircos.List.Plot.Parameters.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Multiple.Species.Core.Components.Rd | 43 RCircos-1.2.0/RCircos/man/RCircos.Multiple.Species.Dataset.Rd | 46 RCircos-1.2.0/RCircos/man/RCircos.Parallel.Line.Plot.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Plot.Heatmap.Color.Scale.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Point.Plot.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Polygon.Data.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Polygon.Plot.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Pseudo.Ideogram.From.Labels.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Pseudo.Ideogram.From.Table.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Reset.Core.Components.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Ribbon.Plot.Rd | 70 RCircos-1.2.0/RCircos/man/RCircos.Scatter.Plot.Rd | 91 - RCircos-1.2.0/RCircos/man/RCircos.Set.Base.Plot.Positions.Rd | 9 RCircos-1.2.0/RCircos/man/RCircos.Set.Core.Components.Rd | 41 RCircos-1.2.0/RCircos/man/RCircos.Set.Cytoband.Data.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Set.Plot.Area.Rd | 49 RCircos-1.2.0/RCircos/man/RCircos.Set.Zoom.Plot.Positions.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Sort.Genomic.Data.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Tile.Plot.Rd | 76 RCircos-1.2.0/RCircos/man/RCircos.Track.Outline.Rd | 78 RCircos-1.2.0/RCircos/man/RCircos.Validate.Cyto.Info.Rd | 27 RCircos-1.2.0/RCircos/man/RCircos.Validate.Genomic.Data.Rd | 31 RCircos-1.2.0/RCircos/man/RCircos.Validate.Genomic.Info.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Validate.Plot.Parameters.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Validate.Track.Positions.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Vertical.Line.Plot.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Workflow.Rd | 12 RCircos-1.2.0/RCircos/man/RCircos.Zoom.Area.Outline.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Zoom.Paired.Plot.Positions.Rd |only RCircos-1.2.0/RCircos/man/RCircos.Zoom.Single.Plot.Positions.Rd |only RCircos-1.2.0/RCircos/man/RCircos.ZoomIn.Chromosome.Rd |only RCircos-1.2.0/RCircos/man/RCircos.ZoomIn.Plot.Rd |only RCircos-1.2.0/RCircos/man/RCircos.ZoomOut.Chromosome.Rd |only RCircos-1.2.0/RCircos/man/RCircos.defaultBasePerUnits.Rd |only RCircos-1.2.0/RCircos/man/RCircos.defaultCharWidth.Rd |only RCircos-1.2.0/RCircos/man/RCircos.defaultChromPadding.Rd |only RCircos-1.2.0/RCircos/man/RCircos.defaultCircosUnits.Rd |only RCircos-1.2.0/RCircos/man/RCircos.defaultTextSize.Rd |only RCircos-1.2.0/RCircos/man/RCircos.heatmapColors.Rd |only RCircos-1.2.0/RCircos/man/RCircos.paddingConst.Rd |only RCircos-1.2.0/RCircos/man/RCircos.plotTypes.Rd |only RCircos-1.2.0/RCircos/man/UCSC.HG38.Human.CytoBandIdeogram.Rd |only RCircos-1.2.0/RCircos/vignettes/Using_RCircos.Rnw | 802 +++++----- 134 files changed, 2160 insertions(+), 1900 deletions(-)
Title: Linear Sparse Group Lasso
Description: Linear multiple output using sparse group lasso. The algorithm
finds the sparse group lasso penalized maximum likelihood estimator. This result
in feature and parameter selection, and parameter estimation.
Use of parallel computing for cross validation and subsampling is supported through
the 'foreach' and 'doParallel' packages. Development version is on github, please report package issues on
github.
Author: Martin Vincent
Maintainer: Martin Vincent <martin.vincent.dk@gmail.com>
Diff between lsgl versions 1.2.1 dated 2016-09-10 and 1.3.0 dated 2016-09-28
lsgl-1.2.1/lsgl/man/lsgl.c.config.Rd |only lsgl-1.3.0/lsgl/DESCRIPTION | 17 ++++----- lsgl-1.3.0/lsgl/MD5 | 31 ++++++++-------- lsgl-1.3.0/lsgl/NAMESPACE | 2 - lsgl-1.3.0/lsgl/R/lsgl_config.R | 10 ----- lsgl-1.3.0/lsgl/R/lsgl_cv.R | 45 ++++++++++++++++++++---- lsgl-1.3.0/lsgl/R/lsgl_subsampling.R | 37 ++++++++++++++++--- lsgl-1.3.0/lsgl/R/startup.R | 10 ++--- lsgl-1.3.0/lsgl/inst/NEWS.Rd | 6 ++- lsgl-1.3.0/lsgl/man/lsgl.cv.Rd | 21 +++++++++-- lsgl-1.3.0/lsgl/man/lsgl.subsampling.Rd | 21 +++++++++-- lsgl-1.3.0/lsgl/src/lsgl.cpp | 1 lsgl-1.3.0/lsgl/src/pkg_c_config.h | 9 ---- lsgl-1.3.0/lsgl/tests/B_lsgl_cv_test.R | 8 ++-- lsgl-1.3.0/lsgl/tests/B_lsgl_subsampling_test.R | 2 - lsgl-1.3.0/lsgl/tests/C_lsgl_omp_test.R | 15 +++----- lsgl-1.3.0/lsgl/tests/H_configuration_test.R | 2 - 17 files changed, 153 insertions(+), 84 deletions(-)
Title: 'GPU'/CPU Benchmarking in Debian-Based Systems
Description: 'GPU'/CPU Benchmarking on Debian-package based systems
This package benchmarks performance of a few standard linear algebra
operations (such as a matrix product and QR, SVD and LU decompositions)
across a number of different 'BLAS' libraries as well as a 'GPU' implementation.
To do so, it takes advantage of the ability to 'plug and play' different
'BLAS' implementations easily on a Debian and/or Ubuntu system. The current
version supports
- 'Reference BLAS' ('refblas') which are un-accelerated as a baseline
- Atlas which are tuned but typically configure single-threaded
- Atlas39 which are tuned and configured for multi-threaded mode
- 'Goto Blas' which are accelerated and multi-threaded
- 'Intel MKL' which is a commercial accelerated and multithreaded version.
As for 'GPU' computing, we use the CRAN package
- 'gputools'
For 'Goto Blas', the 'gotoblas2-helper' script from the ISM in Tokyo can be
used. For 'Intel MKL' we use the Revolution R packages from Ubuntu 9.10.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between gcbd versions 0.2.5 dated 2013-12-12 and 0.2.6 dated 2016-09-28
ChangeLog | 23 +++++++++++++++++++++++ DESCRIPTION | 39 +++++++++++++++++++-------------------- MD5 | 14 +++++++------- NAMESPACE | 11 ++++++++++- R/benchmark.R | 14 +++++++------- build/vignette.rds |binary inst/doc/gcbd.pdf |binary man/benchmark.Rd | 8 ++++---- 8 files changed, 70 insertions(+), 39 deletions(-)
Title: Ensemble Forecast Verification for Large Data Sets
Description: Set of tools to simplify application of atomic forecast
verification metrics for (comparative) verification of ensemble forecasts
to large data sets. The forecast metrics are imported from the
'SpecsVerification' package, and additional forecast metrics are provided
with this package. Alternatively, new user-defined forecast scores can be
implemented using the example scores provided and applied using the
functionality of this package.
Author: MeteoSwiss [aut, cph],
Jonas Bhend [cre],
Jacopo Ripoldi [ctb],
Claudia Mignani [ctb],
Irina Mahlstein [ctb],
Rebecca Hiller [ctb],
Christoph Spirig [ctb],
Mark Liniger [ctb],
Andreas Weigel [ctb],
Joaqu'in Bedia Jimenez [ctb],
Matteo De Felice [ctb]
Maintainer: Jonas Bhend <jonas.bhend@meteoswiss.ch>
Diff between easyVerification versions 0.2.0 dated 2016-01-25 and 0.3.0 dated 2016-09-28
easyVerification-0.2.0/easyVerification/R/zzz.R |only easyVerification-0.2.0/easyVerification/inst/doc/easyVerification.R |only easyVerification-0.3.0/easyVerification/DESCRIPTION | 38 +- easyVerification-0.3.0/easyVerification/MD5 | 68 ++-- easyVerification-0.3.0/easyVerification/NAMESPACE | 7 easyVerification-0.3.0/easyVerification/R/EnsErrorss.R | 24 - easyVerification-0.3.0/easyVerification/R/EnsRocss.R | 33 +- easyVerification-0.3.0/easyVerification/R/RcppExports.R | 2 easyVerification-0.3.0/easyVerification/R/climFairRpss.R |only easyVerification-0.3.0/easyVerification/R/convert2prob.R | 11 easyVerification-0.3.0/easyVerification/R/easyVerification.R | 2 easyVerification-0.3.0/easyVerification/R/generateRef.R |only easyVerification-0.3.0/easyVerification/R/veriApply.R | 153 ++++++--- easyVerification-0.3.0/easyVerification/R/veriUnwrap.R | 34 +- easyVerification-0.3.0/easyVerification/R/weisheimer.R |only easyVerification-0.3.0/easyVerification/build/vignette.rds |binary easyVerification-0.3.0/easyVerification/inst/doc/easyVerification.Rmd | 59 ++- easyVerification-0.3.0/easyVerification/man/Ens2AFC.Rd | 3 easyVerification-0.3.0/easyVerification/man/EnsCorr.Rd | 3 easyVerification-0.3.0/easyVerification/man/EnsError.Rd | 5 easyVerification-0.3.0/easyVerification/man/EnsErrorss.Rd | 20 - easyVerification-0.3.0/easyVerification/man/EnsIgn.Rd | 15 easyVerification-0.3.0/easyVerification/man/EnsRoca.Rd | 3 easyVerification-0.3.0/easyVerification/man/EnsRocss.Rd | 41 +- easyVerification-0.3.0/easyVerification/man/EnsSprErr.Rd | 3 easyVerification-0.3.0/easyVerification/man/FairSprErr.Rd | 7 easyVerification-0.3.0/easyVerification/man/climFairRpss.Rd |only easyVerification-0.3.0/easyVerification/man/convert2prob.Rd | 9 easyVerification-0.3.0/easyVerification/man/count2prob.Rd | 14 easyVerification-0.3.0/easyVerification/man/easyVerification.Rd | 2 easyVerification-0.3.0/easyVerification/man/generateRef.Rd |only easyVerification-0.3.0/easyVerification/man/toymodel.Rd | 25 - easyVerification-0.3.0/easyVerification/man/veriApply.Rd | 155 ++++++---- easyVerification-0.3.0/easyVerification/man/veriUnwrap.Rd | 52 ++- easyVerification-0.3.0/easyVerification/man/weisheimer.Rd |only easyVerification-0.3.0/easyVerification/src/RcppExports.cpp | 26 - easyVerification-0.3.0/easyVerification/tests/testthat/test_Error.R | 3 easyVerification-0.3.0/easyVerification/tests/testthat/test_generateRef.R |only easyVerification-0.3.0/easyVerification/tests/testthat/test_veriApply.R | 26 + easyVerification-0.3.0/easyVerification/vignettes/easyVerification.html |only 40 files changed, 518 insertions(+), 325 deletions(-)
More information about easyVerification at CRAN
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Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the new product development.
Subroutines include correlation reliability test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), non-parametric efficiency analysis measures: DDF (directional distance function), DEA (data envelopment analysis), HDF (hyperbolic distance function), SBM (slack-based measure), and SF (shortage function), benchmarking, risk analysis, technology adoption model, new product target setting, etc.
Author: Dong-Joon Lim, PhD
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>
Diff between DJL versions 2.5 dated 2016-08-18 and 2.6 dated 2016-09-28
DESCRIPTION | 6 - MD5 | 70 ++++++------ NAMESPACE | 4 NEWS | 23 ++++ R/DJL-internal.R | 251 ++++++++++++++++++++++------------------------ R/dm.ddf.R | 11 +- R/dm.dea.R | 16 +- R/dm.hdf.R | 33 +++--- R/dm.sbm.R | 8 - R/dm.sf.R | 12 +- R/map.soa.ddf.R | 104 ++++++++----------- R/map.soa.dea.R | 124 ++++++++++------------ R/map.soa.hdf.R |only R/map.soa.sbm.R | 124 ++++++++++------------ R/map.soa.sf.R | 99 +++++++----------- R/roc.dea.R | 242 ++++++++++++-------------------------------- R/roc.hdf.R |only R/roc.sf.R | 202 ++++++------------------------------- R/target.arrival.dea.R | 201 +++++++++--------------------------- R/target.arrival.hdf.R |only R/target.arrival.sf.R | 169 ++++-------------------------- R/target.spec.dea.R | 245 ++++++++++++++++++++++++-------------------- man/dm.ddf.Rd | 4 man/dm.dea.Rd | 5 man/dm.hdf.Rd | 4 man/dm.sbm.Rd | 4 man/dm.sf.Rd | 4 man/map.soa.ddf.Rd | 7 - man/map.soa.dea.Rd | 3 man/map.soa.hdf.Rd |only man/map.soa.sbm.Rd | 7 - man/map.soa.sf.Rd | 7 - man/roc.dea.Rd | 1 man/roc.hdf.Rd |only man/roc.sf.Rd | 12 +- man/target.arrival.dea.Rd | 9 + man/target.arrival.hdf.Rd |only man/target.arrival.sf.Rd | 7 - man/target.spec.dea.Rd | 3 39 files changed, 809 insertions(+), 1212 deletions(-)
Title: Functions for Thermal Comfort Research
Description: Functions to calculate various common and less common thermal comfort indices, convert physical variables, and evaluate the performance of thermal comfort indices.
Author: Marcel Schweiker [aut, cre] and Sophia Mueller [aut] and Michael Kleber [ctr] and Boris Kingma [ctr] and Masanori Shukuya [ctr]
Maintainer: Marcel Schweiker <marcel.schweiker@kit.edu>
Diff between comf versions 0.1.5 dated 2016-09-13 and 0.1.6 dated 2016-09-28
comf-0.1.5/comf/data/dfASHRAETableC1.RData |only comf-0.1.5/comf/man/dfASHRAETableC1.Rd |only comf-0.1.6/comf/DESCRIPTION | 8 ++--- comf-0.1.6/comf/MD5 | 35 ++++++++++++++------------ comf-0.1.6/comf/NEWS | 9 ++++++ comf-0.1.6/comf/R/ComfortIndices.r | 12 ++++---- comf-0.1.6/comf/R/dfASHRAETableG11.R |only comf-0.1.6/comf/R/dfISO7730AppE.R |only comf-0.1.6/comf/R/dfISO7730TableD1.R |only comf-0.1.6/comf/R/fct2Node.r | 5 ++- comf-0.1.6/comf/R/fctHelp.r | 2 - comf-0.1.6/comf/R/fctPMVPPD.r | 5 ++- comf-0.1.6/comf/data/dfASHRAETableG11.RData |only comf-0.1.6/comf/data/dfISO7730AppE.RData |only comf-0.1.6/comf/inst/doc/R_packages-comf.ltx | 22 +++------------- comf-0.1.6/comf/inst/doc/R_packages-comf.pdf |binary comf-0.1.6/comf/man/calcPMVadj.Rd | 5 --- comf-0.1.6/comf/man/calcPTSadj.Rd | 5 --- comf-0.1.6/comf/man/comf-package.Rd | 4 +- comf-0.1.6/comf/man/dfASHRAETableG11.Rd |only comf-0.1.6/comf/man/dfISO7730AppE.Rd |only comf-0.1.6/comf/man/dfISO7730TableD1.Rd | 4 +- comf-0.1.6/comf/vignettes/R_packages-comf.ltx | 22 +++------------- 23 files changed, 62 insertions(+), 76 deletions(-)