Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing,
manipulating and analyzing transaction data and patterns (frequent
itemsets and association rules). Also provides interfaces to
C implementations of the association mining algorithms Apriori and Eclat
by C. Borgelt.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph],
Christian Borgelt [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.4-2 dated 2016-08-06 and 1.5-0 dated 2016-10-02
arules-1.4-2/arules/src/listops.c |only arules-1.4-2/arules/src/listops.h |only arules-1.4-2/arules/src/nstats.c |only arules-1.4-2/arules/src/nstats.h |only arules-1.4-2/arules/src/params.c |only arules-1.4-2/arules/src/params.h |only arules-1.4-2/arules/src/scan.c |only arules-1.4-2/arules/src/scan.h |only arules-1.5-0/arules/DESCRIPTION | 8 +- arules-1.5-0/arules/MD5 | 58 +++++++--------- arules-1.5-0/arules/NAMESPACE | 3 arules-1.5-0/arules/NEWS.md |only arules-1.5-0/arules/R/AllClasses.R | 6 + arules-1.5-0/arules/R/apriori.R | 2 arules-1.5-0/arules/R/inspect.R | 19 +++-- arules-1.5-0/arules/R/is.redundant.R | 2 arules-1.5-0/arules/R/itemMatrix.R | 12 ++- arules-1.5-0/arules/R/plot.R |only arules-1.5-0/arules/R/ruleInduction.R | 5 + arules-1.5-0/arules/README.md | 51 ++++++++------ arules-1.5-0/arules/inst/doc/arules.pdf |binary arules-1.5-0/arules/man/ASparameter-class.Rd | 6 + arules-1.5-0/arules/man/apriori.Rd | 30 ++++++-- arules-1.5-0/arules/man/associations-class.Rd | 1 arules-1.5-0/arules/man/eclat.Rd | 4 + arules-1.5-0/arules/man/is.redundant.Rd | 24 ++++-- arules-1.5-0/arules/man/itemMatrix-class.Rd | 1 arules-1.5-0/arules/man/weclat.Rd | 13 ++- arules-1.5-0/arules/src/rapriori.c | 55 ++++++++++++--- arules-1.5-0/arules/src/rapriori.h | 1 arules-1.5-0/arules/src/reclat.c | 2 arules-1.5-0/arules/tests/testthat/test-apriori.R | 22 ++---- arules-1.5-0/arules/tests/testthat/test-associations.R | 13 ++- arules-1.5-0/arules/tests/testthat/test-measures.R | 18 +++- arules-1.5-0/arules/tests/testthat/test-ruleInduction.R | 34 +++------ 35 files changed, 244 insertions(+), 146 deletions(-)
Title: Fast R and C++ Access to NIfTI Images
Description: Provides very fast access to images stored in the NIfTI-1 file
format <http://nifti.nimh.nih.gov/nifti-1>, with seamless synchronisation
between compiled C and interpreted R code. Not to be confused with
'RNiftyReg', which provides tools for image registration.
Author: Jon Clayden [cre, aut],
Bob Cox [aut],
Mark Jenkinson [aut],
Rick Reynolds [ctb],
Kate Fissell [ctb],
Jean-loup Gailly [cph],
Mark Adler [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNifti versions 0.2.1 dated 2016-09-20 and 0.2.2 dated 2016-10-02
DESCRIPTION | 25 +++++++++++++++++++------ MD5 | 9 +++++---- NEWS | 9 ++++++++- R/xform.R | 14 ++++++++++---- inst/COPYRIGHTS |only tests/testthat/test-10-xform.R | 3 +++ 6 files changed, 45 insertions(+), 15 deletions(-)
Title: Isotope Pattern, Profile and Centroid Calculation for Mass
Spectrometry
Description: Fast and very memory-efficient calculation of isotope patterns,
subsequent convolution to theoretical envelopes (profiles) plus valley
detection and centroidization or intensoid calculation. Batch processing,
resolution interpolation, wrapper, adduct calculations and molecular
formula parsing.
Author: Martin Loos, Christian Gerber
Maintainer: Martin Loos <mloos@looscomputing.ch>
Diff between enviPat versions 2.1 dated 2016-03-14 and 2.2 dated 2016-10-02
DESCRIPTION | 10 ++++---- MD5 | 16 ++++++------- NEWS | 9 ++++++- R/check_chemform.R | 57 ++++++++++++++++++++++++++++------------------- R/enviPat.R | 2 - data/adducts.rda |binary data/isotopes.rda |binary data/resolution_list.rda |binary man/check_chemform.Rd | 17 +++++++------- 9 files changed, 65 insertions(+), 46 deletions(-)
Title: Divide and Recombine for Large, Complex Data
Description: Methods for dividing data into subsets, applying analytical
methods to the subsets, and recombining the results. Comes with a generic
MapReduce interface as well. Works with key-value pairs stored in memory,
on local disk, or on HDFS, in the latter case using the R and Hadoop
Integrated Programming Environment (RHIPE).
Author: Ryan Hafen [aut, cre],
Landon Sego [ctb]
Maintainer: Ryan Hafen <rhafen@gmail.com>
Diff between datadr versions 0.8.5 dated 2016-03-16 and 0.8.6 dated 2016-10-02
DESCRIPTION | 10 +++++----- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 5 ++++- R/datadr-package.R | 2 +- R/dataops_read.R | 3 +-- R/ddo_ddf_kvHDFS.R | 4 +++- R/divSpec_condDiv.R | 4 ++-- R/divSpec_rrDiv.R | 2 +- R/divide.R | 2 +- R/divide_df.R | 3 ++- R/recombine.R | 2 +- README.md | 23 +++++++++++------------ man/condDiv.Rd | 2 +- man/datadr-package.Rd | 2 +- man/divide.Rd | 2 +- man/makeExtractable.Rd | 4 +++- man/readHDFStextFile.Rd | 2 +- man/recombine.Rd | 2 +- man/rrDiv.Rd | 2 +- 19 files changed, 59 insertions(+), 53 deletions(-)
Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation
(DES) package for R. Designed to be a generic framework, it leverages the
power of 'Rcpp' to boost the performance, turning DES in R feasible. As a
noteworthy characteristic, 'simmer' exploits the concept of trajectory: a
common path in the simulation model for entities of the same type.
Author: Bart Smeets [aut, cph],
Iñaki Ucar [aut, cph, cre]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer versions 3.4.2 dated 2016-09-03 and 3.4.3 dated 2016-10-02
DESCRIPTION | 15 LICENSE | 2 MD5 | 146 +++---- NEWS.md | 16 R/RcppExports.R | 2 R/convenience_funcs.R | 54 +- R/plot.R | 142 +++---- R/simulator.R | 194 ++++----- R/trajectory.R | 203 ++++------ R/utils.R | 26 - R/wrap.R | 52 +- TODO | 1 inst/doc/A-introduction.html | 74 ++- inst/doc/B-terminology.html | 4 inst/doc/C-trajectories.html | 50 +- inst/doc/D-bank-1.html | 4 inst/doc/E-queueing-systems.html | 4 inst/doc/F-ctmc.html | 4 man/add_generator.Rd | 18 man/add_resource.Rd | 8 man/batch.Rd | 6 man/branch.Rd | 2 man/clone.Rd | 4 man/create_trajectory.Rd | 16 man/from.Rd | 8 man/from_to.Rd | 8 man/plot_resource_utilization.Rd | 2 man/renege_in.Rd | 2 man/reset.Rd | 2 man/seize.Rd | 8 man/set_attribute.Rd | 2 man/simmer.Rd | 10 man/timeout.Rd | 4 man/wrap.Rd | 8 src/RcppExports.cpp | 416 ++++++++++----------- src/activity.cpp | 10 src/activity.h | 249 ++++++------ src/entity.h | 6 src/policy.cpp | 4 src/policy.h | 13 src/process.cpp | 54 +- src/process.h | 81 ++-- src/resource.cpp | 24 - src/resource.h | 92 ++-- src/simmer.h | 2 src/simmer_rcpp.cpp | 18 src/simulator.h | 67 +-- src/stats.h | 12 tests/testthat.R | 2 tests/testthat/test-chaining.R | 8 tests/testthat/test-convenience-funcs.R | 24 - tests/testthat/test-plot.R | 32 - tests/testthat/test-simmer-generator.R | 72 +-- tests/testthat/test-simmer-resource-preemption.R | 112 ++--- tests/testthat/test-simmer-resource-priorities.R | 46 +- tests/testthat/test-simmer-resource-schedule.R | 91 ++-- tests/testthat/test-simmer-resource.R | 100 ++--- tests/testthat/test-simmer.R | 84 ++-- tests/testthat/test-simulation-1.R | 56 +- tests/testthat/test-simulation-2.R | 12 tests/testthat/test-trajectory-batch-separate.R | 210 ++++++---- tests/testthat/test-trajectory-branch.R | 38 - tests/testthat/test-trajectory-clone-synchronize.R | 64 +-- tests/testthat/test-trajectory-leave.R | 24 - tests/testthat/test-trajectory-renege.R | 193 ++++++--- tests/testthat/test-trajectory-rollback.R | 60 +-- tests/testthat/test-trajectory-seize-release.R | 78 ++- tests/testthat/test-trajectory-select.R | 86 ++-- tests/testthat/test-trajectory-setattribute.R | 55 +- tests/testthat/test-trajectory-setprioritization.R | 32 - tests/testthat/test-trajectory-timeout.R | 16 tests/testthat/test-trajectory.R | 154 +++---- tests/testthat/test-util-funcs.R | 2 tests/testthat/test-wrap.R | 60 +-- 74 files changed, 2004 insertions(+), 1856 deletions(-)
Title: Estimate Quantitative Genetics Parameters from Generalised
Linear Mixed Models
Description: Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observed phenotypic mean, phenotypic variance and additive genetic variance.
Author: Pierre de Villemereuil <bonamy@horus.ens.fr>
Maintainer: Pierre de Villemereuil <bonamy@horus.ens.fr>
Diff between QGglmm versions 0.5 dated 2016-09-28 and 0.5.1 dated 2016-10-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/doc/QGglmmHowTo.Rnw | 6 +++--- inst/doc/QGglmmHowTo.pdf |binary vignettes/QGglmmHowTo.Rnw | 6 +++--- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.8 dated 2016-08-31 and 1.9 dated 2016-10-02
DESCRIPTION | 8 +++--- MD5 | 60 ++++++++++++++++++++++++++-------------------------- R/mif.R | 2 - R/mif2.R | 17 ++++++++++---- build/partial.rdb |binary inst/NEWS | 20 +++++++++++++++++ inst/NEWS.Rd | 11 +++++++++ man/abc.Rd | 2 - man/basic_probes.Rd | 3 -- man/gompertz.Rd | 2 - man/kalman.Rd | 2 - man/mif2.Rd | 4 +-- man/package.Rd | 14 ++++++------ man/pfilter.Rd | 2 - man/pmcmc.Rd | 2 - man/pomp.Rd | 20 ++++++++--------- man/probe.Rd | 2 - man/ricker.Rd | 2 - man/sir.Rd | 4 +-- src/SSA_simulator.c | 2 - src/dmeasure.c | 2 - src/dprior.c | 2 - src/euler.c | 4 +-- src/initstate.c | 2 - src/partrans.c | 2 - src/pomp_fun.c | 17 ++++++++++++-- src/rmeasure.c | 2 - src/rprior.c | 2 - src/skeleton.c | 2 - src/ssa.c | 10 +++++++- src/trajectory.c | 5 ++-- 31 files changed, 142 insertions(+), 87 deletions(-)
Title: Goodness-of-Fit Tests for Copulae
Description: Several GoF tests for Copulae are provided. A new hybrid test is implemented which supports all of the individual tests. Estimation methods for the margins are provided. All the tests support parameter estimation and predefined values. The parameters are estimated by pseudo maximum likelihood but if it fails the estimation switches automatically to inversion of Kendall's tau. All the tests support automatized parallelization of the bootstrapping tasks.
Author: Ostap Okhrin <ostap.okhrin@tu-dresden.de>,
Simon Trimborn <simon.trimborn@wiwi.hu-berlin.de>,
Shulin Zhang <slzhang@swufe.edu.cn>,
Qian M. Zhou <qmzhou@sfu.ca>
Maintainer: Simon Trimborn <simon.trimborn@wiwi.hu-berlin.de>
Diff between gofCopula versions 0.2-2 dated 2016-09-22 and 0.2-3 dated 2016-10-02
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- R/Tstats.R | 2 +- R/goftime.R | 2 +- R/tests.R | 12 ++++++------ R/tests_CheckTime.R | 12 ++++++------ R/tests_copula_helper.R | 34 +++++++++++++++------------------- R/tests_copula_new.R | 20 ++++++++++---------- R/tests_vine11.R | 4 ++-- R/tests_vine12.R | 4 ++-- R/tests_vine2.R | 7 ++++--- 12 files changed, 64 insertions(+), 67 deletions(-)
More information about fixedTimeEvents at CRAN
Permanent link
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Description: Tools to analyze the embryo growth and the sexualisation thermal reaction norms.
Author: Marc Girondot <marc.girondot@u-psud.fr>
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between embryogrowth versions 6.3 dated 2016-07-18 and 6.4 dated 2016-10-02
DESCRIPTION | 8 MD5 | 67 - NAMESPACE | 1 NEWS | 20 R/GenerateAnchor.R | 3 R/STRN.R | 4 R/STRN_fit.R | 3 R/embryogrowth-package.R | 4 R/info.nests.R | 1526 +++++++++++++++++++------------------- R/plot.NestsResult.R | 9 R/plot.tsd.R | 37 R/plotR.R | 49 - R/plotR_hist.R | 9 R/predict.tsd.R | 2 R/searchR.R | 14 R/tsd.R | 2 R/web.tsd.R |only data/DatabaseTSD.rda |binary data/nest.rda |binary data/resultNest_4p.rda |binary data/resultNest_4p_transition.rda |binary data/resultNest_4p_weight.rda |binary data/resultNest_6p.rda |binary data/resultNest_newp.rda |binary data/tempConst.rda |binary inst |only man/GenerateAnchor.Rd | 3 man/embryogrowth-package.Rd | 4 man/info.nests.Rd | 20 man/plotR.Rd | 28 man/plotR_hist.Rd | 8 man/predict.tsd.Rd | 2 man/searchR.Rd | 14 man/tsd.Rd | 2 man/web.tsd.Rd |only 35 files changed, 967 insertions(+), 872 deletions(-)