Mon, 03 Oct 2016

Package RSurveillance updated to version 0.2.0 with previous version 0.1.0 dated 2014-12-08

Title: Design and Analysis of Disease Surveillance Activities
Description: A range of functions for the design and analysis of disease surveillance activities. These functions were originally developed for animal health surveillance activities but can be equally applied to aquatic animal, wildlife, plant and human health surveillance activities. Utilities are included for sample size calculation and analysis of representative surveys for disease freedom, risk-based studies for disease freedom and for prevalence estimation.
Author: Evan Sergeant
Maintainer: Evan Sergeant <evan@ausvet.com.au>

Diff between RSurveillance versions 0.1.0 dated 2014-12-08 and 0.2.0 dated 2016-10-03

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Package paleofire updated to version 1.1.9 with previous version 1.1.8 dated 2015-12-21

Title: Analysis of Charcoal Records from the Global Charcoal Database
Description: Tools to extract and analyse charcoal sedimentary data stored in the Global Charcoal Database. Main functionalities includes data extraction and sites selection, transformation and interpolation of the charcoal records as well as compositing.
Author: Global Paleofire Working Group <paleofire@univ-fcomte.fr>
Maintainer: Olivier Blarquez <blarquez@gmail.com>

Diff between paleofire versions 1.1.8 dated 2015-12-21 and 1.1.9 dated 2016-10-03

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Package neuropsychology updated to version 0.2.4 with previous version 0.1 dated 2016-09-21

Title: An R Toolbox for Psychologists, Neuropsychologists and Neuroscientists
Description: An R package containing free datasets as well as several statistical functions useful in psychology, neuropsychology and neuroscience.
Author: Dominique Makowski [aut, cre], Phillip Alday [ctb]
Maintainer: Dominique Makowski <dom.makowski@gmail.com>

Diff between neuropsychology versions 0.1 dated 2016-09-21 and 0.2.4 dated 2016-10-03

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More information about neuropsychology at CRAN
Permanent link

Package MetaLandSim updated to version 0.5.4 with previous version 0.5.3 dated 2016-08-01

Title: Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species occurrence in dynamic landscapes, simulate future landscape occupation and evaluate range expansion when new empty patches are available (e.g. as a result of climate change).
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>

Diff between MetaLandSim versions 0.5.3 dated 2016-08-01 and 0.5.4 dated 2016-10-03

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More information about MetaLandSim at CRAN
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New package LabourMarketAreas with initial version 2.0
Package: LabourMarketAreas
Type: Package
Title: Identification, Tuning, Visualisation and Analysis of Labour Market Areas
Version: 2.0
Date: 2016-09-22
Author: Daniela Ichim, Luisa Franconi, Michele D'Alo', Guido van den Heuvel
Maintainer: Luisa Franconi <franconi@istat.it>
Description: Produces Labour Market Areas from commuting flows and provides tools for automatic tuning based on spatial contiguity. It also allows for analyses and visualisation of the new functional geography.
Depends: R (>= 3.01), data.table (>= 1.9.6)
Imports: maptools, rgdal, rgeos, sp, spdep, methods
License: GPL (>= 2)
LazyData: true
NeedsCompilation: no
Packaged: 2016-10-03 13:00:49 UTC; brunero
Repository: CRAN
Date/Publication: 2016-10-03 23:55:57

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New package corehunter with initial version 3.0.0
Package: corehunter
Title: Fast and Flexible Core Subset Selection
Version: 3.0.0
Date: 2016-09-29
Authors@R: c(person("Herman", "De Beukelaer", email = "herman.debeukelaer@gmail.com", role = c("aut", "cre")), person("Guy", "Davenport", email = "daveneti@gmail.com", role = "aut"), person("Veerle", "Fack", email = "veerle.fack@ugent.be", role = "ths"))
Description: Interface to the Core Hunter software for core subset selection. Cores can be constructed based on genetic marker data, phenotypic traits, a precomputed distance matrix, or any combination of these. Various measures are included such as Modified Rogers' distance and Shannon's diversity index (for genotypes) and Gower's distance (for phenotypes). Core Hunter can also optimize a weighted combination of multiple measures, to bring the different perspectives closer together.
Depends: R (>= 3.2.3), rJava (>= 0.9-8)
Imports: naturalsort (>= 0.1.2), methods
SystemRequirements: Java JRE 8 or higher
License: MIT + file LICENSE
LazyData: true
RoxygenNote: 5.0.1
Suggests: testthat, StatMatch
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2016-10-03 12:57:59 UTC; hdbeukel
Author: Herman De Beukelaer [aut, cre], Guy Davenport [aut], Veerle Fack [ths]
Maintainer: Herman De Beukelaer <herman.debeukelaer@gmail.com>
Repository: CRAN
Date/Publication: 2016-10-04 00:14:17

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Package strvalidator updated to version 1.8.0 with previous version 1.7.0 dated 2016-07-05

Title: Process Control and Internal Validation of Forensic STR Kits
Description: An open source platform for validation and process control. Tools to analyse data from internal validation of forensic short tandem repeat (STR) kits are provided. The tools are developed to provide the necessary data to conform with guidelines for internal validation issued by the European Network of Forensic Science Institutes (ENFSI) DNA Working Group, and the Scientific Working Group on DNA Analysis Methods (SWGDAM). A front-end graphical user interface is provided. More information about each function can be found in the respective help documentation.
Author: Oskar Hansson
Maintainer: Oskar Hansson <oskar.hansson@fhi.no>

Diff between strvalidator versions 1.7.0 dated 2016-07-05 and 1.8.0 dated 2016-10-03

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Package SHELF updated to version 1.2.1 with previous version 1.2.0 dated 2016-08-17

Title: Tools to Support the Sheffield Elicitation Framework
Description: Implements various methods for eliciting a probability distribution for a single parameter from an expert or a group of experts. The expert provides a small number of probability judgements, corresponding to points on his or her cumulative distribution function. A range of parametric distributions can then be fitted and displayed, with feedback provided in the form of fitted probabilities and percentiles. A graphical interface for the roulette elicitation method is also provided. For multiple experts, a weighted linear pool can be calculated. Also includes functions for eliciting beliefs about population distributions.
Author: Jeremy Oakley
Maintainer: Jeremy Oakley <j.oakley@sheffield.ac.uk>

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Package rscorecard updated to version 0.2.8 with previous version 0.2.5 dated 2016-05-18

Title: A Method to Download Department of Education College Scorecard Data
Description: A method to download Department of Education College Scorecard data using the public API. It is based on the dplyr model of piped commands to select and filter data in a single chained function call. An API key from the U.S. Department of Education is required.
Author: Benjamin Skinner [aut, cre]
Maintainer: Benjamin Skinner <b.skinner@vanderbilt.edu>

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Package rfPermute updated to version 2.1.5 with previous version 2.1.1 dated 2016-08-04

Title: Estimate Permutation p-Values for Random Forest Importance Metrics
Description: Estimate significance of importance metrics for a Random Forest model by permuting the response variable. Produces null distribution of importance metrics for each predictor variable and p-value of observed. Provides summary and visualization functions for 'randomForest' results.
Author: Eric Archer [aut, cre]
Maintainer: Eric Archer <eric.archer@noaa.gov>

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Package RDocumentation updated to version 0.7.0 with previous version 0.6 dated 2016-09-28

Title: Integrate R with 'RDocumentation.org'
Description: Wraps around the default help functionality in R. Instead of plain documentation files, documentation will now show up as it does on 'RDocumentation.org', a platform that shows R documentation from CRAN, GitHub and Bioconductor, together with informative stats to assess the package quality and possibilities to discuss packages.
Author: Jonathan Cornelissen <jonathan@datacamp.com>
Maintainer: Ludovic Vannoorenberghe <ludovic@datacamp.com>

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Package rangeBuilder updated to version 1.3 with previous version 1.2 dated 2016-04-14

Title: Occurrence Filtering, Geographic and Taxonomic Standardization and Generation of Species Range Polygons
Description: Provides tools for filtering occurrence records, generating alpha-hull-derived range polygons and mapping species richness.
Author: Pascal Title
Maintainer: Pascal Title <ptitle@umich.edu>

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Package paco updated to version 0.3.0 with previous version 0.2.3 dated 2015-11-10

Title: Procrustes Application to Cophylogenetic Analysis
Description: Procrustes analyses to infer co-phylogenetic matching between pairs of (ultrametric) phylogenetic trees.
Author: Juan Antonio Balbuena <j.a.balbuena@uv.es>, Timothee Poisot <tim@poisotlab.io>, Matthew Hutchinson <matthewhutchinson15@gmail.com>, Fernando Cagua <fernando@cagua.co>
Maintainer: Matthew Hutchinson <matthewhutchinson15@gmail.com>

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Package mrds updated to version 2.1.17 with previous version 2.1.16 dated 2016-08-10

Title: Mark-Recapture Distance Sampling
Description: Animal abundance estimation via conventional, multiple covariate and mark-recapture distance sampling (CDS/MCDS/MRDS). Detection function fitting is performed via maximum likelihood. Also included are diagnostics and plotting for fitted detection functions. Abundance estimation is via a Horvitz-Thompson-like estimator.
Author: Jeff Laake <jeff.laake@noaa.gov>, David Borchers <dlb@st-and.ac.uk>, Len Thomas <len.thomas@st-and.ac.uk>, David Miller <dave@ninepointeightone.net> and Jon Bishop
Maintainer: Laura Marshall <lhm@st-andrews.ac.uk>

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Package gets updated to version 0.9 with previous version 0.8 dated 2016-06-28

Title: General-to-Specific (GETS) Modelling and Indicator Saturation Methods
Description: Automated General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean.
Author: Genaro Sucarrat [aut, cre], Felix Pretis [aut], James Reade [aut]
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>

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Package FedData updated to version 2.3.0 with previous version 2.2.0 dated 2016-09-26

Title: Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from several federated data sources (mainly sources maintained by the US Federal government). Currently, the package allows for retrieval of five datasets: The National Elevation Dataset digital elevation models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic (SSURGO) database from the National Cooperative Soil Survey (NCSS), which is led by the Natural Resources Conservation Service (NRCS) under the USDA; the Global Historical Climatology Network (GHCN), coordinated by National Climatic Data Center at NOAA; the Daymet gridded estimates of daily weather parameters for North America, version 3, available from the Oak Ridge National Laboratory's Distributed Active Archive Center (DAAC); and the International Tree Ring Data Bank. Additional data sources are in the works, global soils (HWSD), MODIS satellite data products, the National Atlas (US), Natural Earth, and WorldClim.
Author: R. Kyle Bocinsky [aut, cre], Dylan Beaudette [ctb], Scott Chamberlain [ctb]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>

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Package dtwclust updated to version 2.3.0 with previous version 2.2.1 dated 2016-09-04

Title: Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance
Description: Time series clustering along with optimized techniques related to the Dynamic Time Warping distance and its corresponding lower bounds. Implementations of partitional, hierarchical, fuzzy, k-Shape and TADPole clustering are available. Functionality can be easily extended with custom distance measures and centroid definitions.
Author: Alexis Sarda-Espinosa
Maintainer: Alexis Sarda <alexis.sarda@gmail.com>

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Package dsm updated to version 2.2.13 with previous version 2.2.12 dated 2016-08-11

Title: Density Surface Modelling of Distance Sampling Data
Description: Density surface modelling of line transect data. A Generalized Additive Model-based approach is used to calculate spatially-explicit estimates of animal abundance from distance sampling (also presence/absence and strip transect) data. Several utility functions are provided for model checking, plotting and variance estimation.
Author: David L. Miller, Eric Rexstad, Louise Burt, Mark V. Bravington, Sharon Hedley.
Maintainer: Laura Marshall <lhm@st-andrews.ac.uk>

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Package dlsem updated to version 1.4 with previous version 1.3.2 dated 2016-09-16

Title: Distributed-Lag Structural Equation Modelling with Second-Order Polynomial Lag Shapes
Description: Estimation and path analysis functionalities for structural equation models with second-order polynomial lag shapes.
Author: Alessandro Magrini
Maintainer: Alessandro Magrini <magrini@disia.unifi.it>

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Package blscrapeR updated to version 1.0.1 with previous version 0.4.2 dated 2016-07-29

Title: An API Wrapper for the Bureau of Labor Statistics (BLS)
Description: Scrapes various data from the Bureau of Labor Statistics, which is the statistical branch of the United States Department of Labor. The package has additional functions to help parse, analyze and visualize the data.
Author: Kris Eberwein [aut, cre]
Maintainer: Kris Eberwein <eberwein@knights.ucf.edu>

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Package BAMMtools updated to version 2.1.5 with previous version 2.1.4 dated 2016-06-13

Title: Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees
Description: Provides functions for analyzing and visualizing complex macroevolutionary dynamics on phylogenetic trees. It is a companion package to the command line program BAMM (Bayesian Analysis of Macroevolutionary Mixtures) and is entirely oriented towards the analysis, interpretation, and visualization of evolutionary rates. Functionality includes visualization of rate shifts on phylogenies, estimating evolutionary rates through time, comparing posterior distributions of evolutionary rates across clades, comparing diversification models using Bayes factors, and more.
Author: Dan Rabosky, Mike Grundler, Pascal Title, Carlos Anderson, Jeff Shi, Joseph Brown, Huateng Huang, Jon Mitchell
Maintainer: Pascal Title <ptitle@umich.edu>

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Package spcr updated to version 2.0 with previous version 1.2.1 dated 2014-12-04

Title: Sparse Principal Component Regression
Description: The sparse principal component regression is computed. The regularization parameters are optimized by cross-validation.
Author: Shuichi Kawano
Maintainer: Shuichi Kawano <skawano@uec.ac.jp>

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Package pcrsim updated to version 1.0.1 with previous version 1.0.0 dated 2016-04-21

Title: Simulation of the Forensic DNA Process
Description: Simulate the forensic DNA process: generate random or fixed DNA profiles, create forensic samples including mixtures of diploid and haploid cells, simulate DNA extraction, normalization, degradation, amplification including stutters and inter-locus balance, and capillary electrophoresis. DNA profiles are visualized as electropherograms and saved in tables. The command pcrsim() opens up a graphical user interface which allow the user to create projects, to enter, load, and save parameters required for the simulation. The simulation is transparent and the parameters used in each step of the simulation can be viewed in the result tables.
Author: Oskar Hansson
Maintainer: Oskar Hansson <oskar.hansson@fhi.no>

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Package tigerhitteR updated to version 1.1.0 with previous version 1.0.2 dated 2016-07-07

Title: Pre-Process of Time Series Data Set in R
Description: Pre-process for discrete time series data set which is not continuous at the column of 'date'. Refilling records of missing 'date' and other columns to the hollow data set so that final data set is able to be dealt with time series analysis.
Author: Will Kuan <aiien61will@gmail.com>
Maintainer: Will Kuan <aiien61will@gmail.com>

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Package kernlab updated to version 0.9-25 with previous version 0.9-24 dated 2016-03-29

Title: Kernel-Based Machine Learning Lab
Description: Kernel-based machine learning methods for classification, regression, clustering, novelty detection, quantile regression and dimensionality reduction. Among other methods 'kernlab' includes Support Vector Machines, Spectral Clustering, Kernel PCA, Gaussian Processes and a QP solver.
Author: Alexandros Karatzoglou [aut, cre], Alex Smola [aut], Kurt Hornik [aut]
Maintainer: Alexandros Karatzoglou <alexandros.karatzoglou@gmail.com>

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Package BDgraph updated to version 2.28 with previous version 2.27 dated 2016-04-22

Title: Bayesian Structure Learning in Graphical Models using Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models with both continuous and discrete variables.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>

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Package trelliscope updated to version 0.9.7 with previous version 0.9.4 dated 2016-03-25

Title: Create and Navigate Large Multi-Panel Visual Displays
Description: An extension of Trellis Display that enables creation, organization, and interactive viewing of multi-panel displays created against potentially very large data sets. The dynamic viewer tiles panels of a display across the screen in a web browser and allows the user to interactively page through the panels and sort and filter them based on "cognostic" metrics computed for each panel. Panels can be created using many of R's plotting capabilities, including base R graphics, 'lattice', 'ggplot2', and many 'htmlwidgets'. Conditioning is handled through the 'datadr' package, which enables 'Trelliscope' displays with potentially millions of panels to be created against terabytes of data on systems like 'Hadoop'. While designed to scale, 'Trelliscope' displays can also be very useful for small data sets.
Author: Ryan Hafen [aut, cre], Jeremiah Rounds [ctb], Barret Schloerke [ctb], Landon Sego [ctb]
Maintainer: Ryan Hafen <rhafen@gmail.com>

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Package stremr updated to version 0.2 with previous version 0.1 dated 2016-10-01

Title: Streamlined Estimation of Survival for Static, Dynamic and Stochastic Treatment and Monitoring Regimes
Description: Analysis of longitudinal time-to-event or time-to-failure data. Estimates the counterfactual discrete survival curve under static, dynamic and stochastic interventions on treatment (exposure) and monitoring events over time. Estimators (IPW, MSM-IPW, GCOMP, longitudinal TMLE) adjust for measured time-varying confounding and informative right-censoring. Model fitting can be performed either with GLM or H2O-3 machine learning libraries, including the ensemble-based SuperLearner ('h2oEnsemble'). The exposure, monitoring and censoring variables can be coded as either binary, categorical or continuous. Each can be multivariate (e.g., can use more than one column of dummy indicators for different censoring events). The input data needs to be in long format.
Author: Oleg Sofrygin [aut, cre], Mark J. van der Laan [aut], Romain Neugebauer [aut]
Maintainer: Oleg Sofrygin <oleg.sofrygin@gmail.com>

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Package RcppGSL updated to version 0.3.1 with previous version 0.3.0 dated 2015-08-30

Title: 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Description: 'Rcpp' integration for 'GNU GSL' vectors and matrices The 'GNU Scientific Library' (or 'GSL') is a collection of numerical routines for scientific computing. It is particularly useful for C and C++ programs as it provides a standard C interface to a wide range of mathematical routines such as special functions, permutations, combinations, fast fourier transforms, eigensystems, random numbers, quadrature, random distributions, quasi-random sequences, Monte Carlo integration, N-tuples, differential equations, simulated annealing, numerical differentiation, interpolation, series acceleration, Chebyshev approximations, root-finding, discrete Hankel transforms physical constants, basis splines and wavelets. There are over 1000 functions in total with an extensive test suite. The 'RcppGSL' package provides an easy-to-use interface between 'GSL' data structures and R using concepts from 'Rcpp' which is itself a package that eases the interfaces between R and C++. This package also serves as a prime example of how to build a package that uses 'Rcpp' to connect to another third-party library. The 'autoconf' script, 'inline' plugin and example package can all be used as a stanza to write a similar package against another library.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppGSL versions 0.3.0 dated 2015-08-30 and 0.3.1 dated 2016-10-03

 RcppGSL-0.3.0/RcppGSL/R/unit.test.R                   |only
 RcppGSL-0.3.0/RcppGSL/inst/unitTests/runTests.R       |only
 RcppGSL-0.3.1/RcppGSL/ChangeLog                       |   17 ++++
 RcppGSL-0.3.1/RcppGSL/DESCRIPTION                     |    8 +-
 RcppGSL-0.3.1/RcppGSL/MD5                             |   32 +++-----
 RcppGSL-0.3.1/RcppGSL/README.md                       |   69 +++++++++++++++++
 RcppGSL-0.3.1/RcppGSL/build/vignette.rds              |binary
 RcppGSL-0.3.1/RcppGSL/inst/NEWS.Rd                    |   14 +++
 RcppGSL-0.3.1/RcppGSL/inst/doc/RcppGSL-intro.R        |    6 -
 RcppGSL-0.3.1/RcppGSL/inst/doc/RcppGSL-intro.Rnw      |    6 -
 RcppGSL-0.3.1/RcppGSL/inst/doc/RcppGSL-intro.pdf      |binary
 RcppGSL-0.3.1/RcppGSL/inst/doc/RcppGSL-unitTests.R    |   12 +--
 RcppGSL-0.3.1/RcppGSL/inst/doc/RcppGSL-unitTests.Rnw  |   12 +--
 RcppGSL-0.3.1/RcppGSL/inst/doc/RcppGSL-unitTests.pdf  |binary
 RcppGSL-0.3.1/RcppGSL/tests/doRUnit.R                 |   70 ++++++++++--------
 RcppGSL-0.3.1/RcppGSL/vignettes/RcppGSL-intro.Rnw     |    6 -
 RcppGSL-0.3.1/RcppGSL/vignettes/RcppGSL-unitTests.Rnw |   12 +--
 RcppGSL-0.3.1/RcppGSL/vignettes/buildVignette.R       |    2 
 18 files changed, 182 insertions(+), 84 deletions(-)

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New package meteoland with initial version 0.4.3
Package: meteoland
Type: Package
Title: Landscape Meteorology Tools
Version: 0.4.3
Date: 2016-09-28
Author: Miquel De Caceres, Nicolas Martin, Antoine Cabon
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Description: Functions to estimate weather variables at any position of a landscape.
License: GPL (>= 2)
LazyData: TRUE
Depends: R (>= 2.10), sp, qmap
Imports: spdep, rgdal, ncdf4, ncdf4.helpers, methods, Rcpp (>= 0.11.0)
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2016-10-02 21:05:48 UTC; miquelcaceres
Repository: CRAN
Date/Publication: 2016-10-03 08:17:46

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New package janitor with initial version 0.2.0
Package: janitor
Title: Simple Tools for Examining and Cleaning Dirty Data
Version: 0.2.0
Authors@R: c(person("Sam", "Firke", email = "samuel.firke@gmail.com", role = c("aut", "cre")), person("Chris", "Haid", email = "chrishaid@gmail.com", role = "ctb"))
Description: The main janitor functions can: perfectly format data.frame column names; isolate duplicate records; and provide quick one- and two-variable tabulations (i.e., frequency tables and crosstabs). Other janitor functions nicely format the results of these tabulations. These tabulate-and-report functions approximate popular features of SPSS and Microsoft Excel. This package follows the principles of the "tidyverse" and works well with the pipe function %>%. janitor was built with beginning-to-intermediate R users in mind and is optimized for user-friendliness. Advanced R users can already do everything covered here, but with janitor they can do it faster and save their thinking for the fun stuff.
URL: https://github.com/sfirke/janitor
BugReports: https://github.com/sfirke/janitor/issues
Depends: R (>= 3.1.2)
Imports: dplyr, tidyr, magrittr
License: MIT + file LICENSE
LazyData: true
RoxygenNote: 5.0.1
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-10-02 19:13:25 UTC; SFirke
Author: Sam Firke [aut, cre], Chris Haid [ctb]
Maintainer: Sam Firke <samuel.firke@gmail.com>
Repository: CRAN
Date/Publication: 2016-10-03 08:17:44

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Package hunspell updated to version 2.1 with previous version 2.0 dated 2016-09-08

Title: High-Performance Stemmer, Tokenizer, and Spell Checker for R
Description: A spell checker and morphological analyzer library designed for languages with rich morphology and complex word compounding or character encoding. The package can check and analyze individual words as well as search for incorrect words within a text, latex, html or xml document. Use the 'devtools' package to spell check R documentation with 'hunspell'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

Diff between hunspell versions 2.0 dated 2016-09-08 and 2.1 dated 2016-10-03

 DESCRIPTION                |    6 ++--
 MD5                        |   18 ++++++-------
 NEWS                       |    7 ++++-
 R/hunspell.R               |    2 -
 inst/doc/intro.R           |   17 +++++++++---
 inst/doc/intro.Rmd         |   60 ++++++++++++++++++++++++++++-----------------
 inst/doc/intro.html        |   56 +++++++++++++++++-------------------------
 man/hunspell.Rd            |    2 -
 src/hunspell/suggestmgr.cc |    4 +--
 vignettes/intro.Rmd        |   34 ++++++++++++-------------
 10 files changed, 112 insertions(+), 94 deletions(-)

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New package GSMX with initial version 0.1
Package: GSMX
Type: Package
Title: Multivariate Genomic Selection
Version: 0.1
Date: 2016-9-25
Author: Zhenyu Jia
Maintainer: Zhenyu Jia <ajia.ucr@gmail.com>
Imports: stats, MASS, psych
Description: Estimating trait heritability and handling overfitting. This package includes a collection of functions for (1) estimating genetic variance-covariances and calculate trait heritability; and (2) handling overfitting by calculating the variance components and the heritability through cross validation.
Depends: R (>= 3.0.0)
License: GPL (>= 2)
LazyLoad: no
NeedsCompilation: no
Packaged: 2016-10-03 04:26:27 UTC; ch263
Repository: CRAN
Date/Publication: 2016-10-03 08:17:34

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Package arulesViz updated to version 1.2-0 with previous version 1.1-1 dated 2016-04-14

Title: Visualizing Association Rules and Frequent Itemsets
Description: Extends package arules with various visualization techniques for association rules and itemsets. The package also includes several interactive visualizations for rule exploration.
Author: Michael Hahsler and Sudheer Chelluboina
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between arulesViz versions 1.1-1 dated 2016-04-14 and 1.2-0 dated 2016-10-03

 DESCRIPTION            |   10 +++----
 MD5                    |   31 +++++++++++++----------
 NAMESPACE              |   21 +++++++---------
 NEWS.md                |only
 R/AAAhelpers.R         |    5 +++
 R/AAAparameter.R       |    8 +++---
 R/graph.R              |    2 -
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 R/matrix.R             |    2 -
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 README.md              |    8 +++---
 inst/doc/arulesViz.pdf |binary
 man/inspectDT.Rd       |only
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 man/plotly_arules.Rd   |only
 19 files changed, 130 insertions(+), 118 deletions(-)

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