Title: Generalized Joint Attribute Modeling
Description: Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling.
Author: James S. Clark, Daniel Taylor-Rodriquez
Maintainer: James S. Clark <jimclark@duke.edu>
Diff between gjam versions 1.0 dated 2016-01-04 and 2.0 dated 2016-10-04
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Title: A Toolbox for Multivariate Meta-Analysis
Description: A toolbox for meta-analysis. This package includes a collection of functions for (1) implementing robust multivariate meta-analysis of continuous or binary outcomes; and (2) a bivariate Egger's test for detecting publication bias.
Author: Yong Chen [aut, cre],
Chuan Hong [aut],
Haitao Chu [ctb],
Yulun Liu [ctb]
Maintainer: Yong Chen <ychen.upenn@gmail.com>
Diff between xmeta versions 1.1-1 dated 2016-06-13 and 1.1-2 dated 2016-10-04
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/xmeta-package.Rd | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Modern Text Mining Framework for R
Description: Fast and memory-friendly tools for text vectorization,
topic modeling (LDA, LSA), word embeddings (GloVe), similarities.
This package provides a source-agnostic streaming API, which allows researchers
to perform analysis of collections of documents which are larger than available RAM.
All core functions are parallelized to benefit from multicore machines.
Author: Dmitriy Selivanov [aut, cre],
Lincoln Mullen [ctb]
Maintainer: Dmitriy Selivanov <selivanov.dmitriy@gmail.com>
Diff between text2vec versions 0.3.0 dated 2016-03-31 and 0.4.0 dated 2016-10-04
text2vec-0.3.0/text2vec/R/glove.R |only text2vec-0.3.0/text2vec/R/matrix.R |only text2vec-0.3.0/text2vec/R/similarity.R |only text2vec-0.3.0/text2vec/inst/doc/advanced.R |only text2vec-0.3.0/text2vec/inst/doc/advanced.Rmd |only text2vec-0.3.0/text2vec/inst/doc/advanced.html |only text2vec-0.3.0/text2vec/man/GloveFitter.Rd |only text2vec-0.3.0/text2vec/man/HashCorpus.Rd |only text2vec-0.3.0/text2vec/man/VocabCorpus.Rd |only text2vec-0.3.0/text2vec/man/VocabularyBuilder.Rd |only text2vec-0.3.0/text2vec/man/ilines.Rd |only text2vec-0.3.0/text2vec/src/sort.cpp |only text2vec-0.3.0/text2vec/tests/testthat/not-test-glove.R |only text2vec-0.3.0/text2vec/tests/testthat/not-test-perf.R |only text2vec-0.3.0/text2vec/vignettes/advanced.Rmd |only text2vec-0.4.0/text2vec/DESCRIPTION | 31 text2vec-0.4.0/text2vec/MD5 | 166 +- text2vec-0.4.0/text2vec/NAMESPACE | 47 text2vec-0.4.0/text2vec/NEWS.md |only text2vec-0.4.0/text2vec/R/RcppExports.R |only text2vec-0.4.0/text2vec/R/analogies.R | 82 - text2vec-0.4.0/text2vec/R/distance.R |only text2vec-0.4.0/text2vec/R/distance_RWMD.R |only text2vec-0.4.0/text2vec/R/dtm.R | 103 - 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text2vec-0.4.0/text2vec/src/VocabCorpus.cpp | 18 text2vec-0.4.0/text2vec/src/VocabCorpus.h | 309 ++-- text2vec-0.4.0/text2vec/src/Vocabulary.cpp | 18 text2vec-0.4.0/text2vec/src/Vocabulary.h | 192 +- text2vec-0.4.0/text2vec/src/matrix_utils.cpp |only text2vec-0.4.0/text2vec/src/text2vec.h | 29 text2vec-0.4.0/text2vec/src/uint_hash.cpp | 16 text2vec-0.4.0/text2vec/src/utils.cpp | 112 - text2vec-0.4.0/text2vec/tests/testthat/not-test-doc2vec.R | 104 - text2vec-0.4.0/text2vec/tests/testthat/test-distances.R |only text2vec-0.4.0/text2vec/tests/testthat/test-hash-corpus.R | 37 text2vec-0.4.0/text2vec/tests/testthat/test-iterators.R | 82 - text2vec-0.4.0/text2vec/tests/testthat/test-lsa.R |only text2vec-0.4.0/text2vec/tests/testthat/test-s3-interface.R |only text2vec-0.4.0/text2vec/tests/testthat/test-tcm.R | 24 text2vec-0.4.0/text2vec/tests/testthat/test-utils.R | 52 text2vec-0.4.0/text2vec/tests/testthat/test-vocab-corpus.R | 114 - text2vec-0.4.0/text2vec/tests/testthat/test-vocab-high-level.R | 30 text2vec-0.4.0/text2vec/tests/testthat/utf8.r |only text2vec-0.4.0/text2vec/vignettes/files-multicore.Rmd |only text2vec-0.4.0/text2vec/vignettes/glove.Rmd | 149 +- text2vec-0.4.0/text2vec/vignettes/text-vectorization.Rmd | 376 +++-- 108 files changed, 4250 insertions(+), 2426 deletions(-)
Title: Post-Processing of the Markov Chain Simulated by ChronoModel
Description: Provides a list of functions for the statistical analysis and the post-processing of the Markov Chains simulated by ChronoModel (see <http://www.chronomodel.fr> for more information). ChronoModel is a friendly software to construct a chronological model in a Bayesian framework. Its output is a sampled Markov chain from the posterior distribution of dates component the chronology.
Author: Anne Philippe and Marie-Anne Vibet
Maintainer: Anne Philippe <anne.philippe@univ-nantes.fr>
Diff between RChronoModel versions 0.2 dated 2016-06-21 and 0.3 dated 2016-10-04
DESCRIPTION | 13 - MD5 | 15 - NAMESPACE | 13 - R/prog.R | 480 +++++++++++++++++++++++++++++++++++-------- man/DatesHiatus.Rd |only man/MarginalStatistics.Rd | 2 man/MultiCredibleInterval.Rd | 2 man/MultiDatesPlot.Rd |only man/MultiHPD.Rd |only man/TempoActivityPlot.Rd |only man/TempoPlot.Rd |only 11 files changed, 418 insertions(+), 107 deletions(-)
Title: Persist Attributes Across Data Operations
Description: In base R, object attributes are lost when objects are modified by
common data operations such as subset, filter, slice, append, extract
etc. This packages allows objects to be marked as 'sticky' and have
attributes persisted during these operations or when inserted
into or extracted from recursive (i.e. list- or table-like) objects.
Author: Christopher Brown [aut, cre],
Decision Patterns [cph]
Maintainer: Christopher Brown <chris.brown@decisionpatterns.com>
Diff between sticky versions 0.3.3 dated 2016-09-26 and 0.3.6 dated 2016-10-04
sticky-0.3.3/sticky/inst/doc/sticky.R |only sticky-0.3.3/sticky/inst/doc/sticky.Rmd |only sticky-0.3.3/sticky/inst/doc/sticky.html |only sticky-0.3.3/sticky/vignettes/sticky.Rmd |only sticky-0.3.6/sticky/DESCRIPTION | 16 +++++------ sticky-0.3.6/sticky/MD5 | 34 ++++++++++++------------- sticky-0.3.6/sticky/NAMESPACE | 2 - sticky-0.3.6/sticky/NEWS | 31 ++++++++++++++++++---- sticky-0.3.6/sticky/R/append.R | 1 sticky-0.3.6/sticky/R/sticky.R | 10 +------ sticky-0.3.6/sticky/README.md | 12 ++++---- sticky-0.3.6/sticky/build/vignette.rds |binary sticky-0.3.6/sticky/inst/doc/introduction.R |only sticky-0.3.6/sticky/inst/doc/introduction.Rmd |only sticky-0.3.6/sticky/inst/doc/introduction.html |only sticky-0.3.6/sticky/man/append.Rd | 2 - sticky-0.3.6/sticky/man/extract.Rd | 2 - sticky-0.3.6/sticky/man/init.Rd | 5 ++- sticky-0.3.6/sticky/man/print.sticky.Rd | 6 ++-- sticky-0.3.6/sticky/man/sticky.Rd | 12 ++++---- sticky-0.3.6/sticky/man/subset.sticky.Rd | 2 - sticky-0.3.6/sticky/vignettes/introduction.Rmd |only 22 files changed, 75 insertions(+), 60 deletions(-)
Title: A Toolbox for the Analysis of Proteomics Data
Description: Tools for the statistical analysis and visualization of (relative
and absolute) quantitative (LFQ,TMT,HRM) Proteomics data.
Author: Erik Ahrne
Maintainer: Erik Ahrne <erik.ahrne@unibas.ch>
Diff between SafeQuant versions 2.2.2 dated 2016-01-07 and 2.3 dated 2016-10-04
SafeQuant-2.2.2/SafeQuant/exec/mFuzzClustering.R |only SafeQuant-2.2.2/SafeQuant/inst/testData |only SafeQuant-2.2.2/SafeQuant/inst/version |only SafeQuant-2.3/SafeQuant/DESCRIPTION | 12 SafeQuant-2.3/SafeQuant/MD5 | 201 ++-- SafeQuant-2.3/SafeQuant/NAMESPACE | 9 SafeQuant-2.3/SafeQuant/R/ExpressionAnalysis.R | 478 ++++++---- SafeQuant-2.3/SafeQuant/R/Graphics.R | 337 ++++++- SafeQuant-2.3/SafeQuant/R/Parser.R | 55 - SafeQuant-2.3/SafeQuant/R/SafeQuantAnalysis.R | 23 SafeQuant-2.3/SafeQuant/R/TMT.R | 296 ++++++ SafeQuant-2.3/SafeQuant/R/UserOptions.R | 136 +- SafeQuant-2.3/SafeQuant/README.md | 8 SafeQuant-2.3/SafeQuant/exec/installDependencies.R |only SafeQuant-2.3/SafeQuant/exec/safeQuant.R | 362 +++++-- SafeQuant-2.3/SafeQuant/inst/manuals/SafeQuant-man.pdf |binary SafeQuant-2.3/SafeQuant/inst/manuals/tsv_spreadsheet_help.docx |binary SafeQuant-2.3/SafeQuant/inst/manuals/tsv_spreadsheet_help.pdf |binary SafeQuant-2.3/SafeQuant/man/COLORS.Rd | 5 SafeQuant-2.3/SafeQuant/man/addIdQvalues.Rd | 4 SafeQuant-2.3/SafeQuant/man/addScaffoldPTMFAnnotations.Rd | 2 SafeQuant-2.3/SafeQuant/man/barplotMSSignal.Rd | 2 SafeQuant-2.3/SafeQuant/man/calibrationCurve.Rd | 2 SafeQuant-2.3/SafeQuant/man/createExpDesign.Rd | 4 SafeQuant-2.3/SafeQuant/man/createExpressionDataset.Rd | 2 SafeQuant-2.3/SafeQuant/man/createPairedExpDesign.Rd |only SafeQuant-2.3/SafeQuant/man/cvBoxplot.Rd | 2 SafeQuant-2.3/SafeQuant/man/expDesignTagToExpDesign.Rd | 18 SafeQuant-2.3/SafeQuant/man/export.Rd | 2 SafeQuant-2.3/SafeQuant/man/getAAProteinCoordinates.Rd | 2 SafeQuant-2.3/SafeQuant/man/getAllCV.Rd | 2 SafeQuant-2.3/SafeQuant/man/getAllEBayes.Rd | 10 SafeQuant-2.3/SafeQuant/man/getBaselineIntensity.Rd | 2 SafeQuant-2.3/SafeQuant/man/getCV.Rd | 2 SafeQuant-2.3/SafeQuant/man/getExpDesignProgenesisCsv.Rd | 2 SafeQuant-2.3/SafeQuant/man/getGlobalNormFactors.Rd | 4 SafeQuant-2.3/SafeQuant/man/getIBAQEset.Rd | 4 SafeQuant-2.3/SafeQuant/man/getIdLevelQvals.Rd | 2 SafeQuant-2.3/SafeQuant/man/getImpuritiesMatrix.Rd | 2 SafeQuant-2.3/SafeQuant/man/getIntSumPerProtein.Rd | 4 SafeQuant-2.3/SafeQuant/man/getLoocvFoldError.Rd | 2 SafeQuant-2.3/SafeQuant/man/getMaxIndex.Rd | 2 SafeQuant-2.3/SafeQuant/man/getMeanCenteredRange.Rd | 2 SafeQuant-2.3/SafeQuant/man/getModifProteinCoordinates.Rd | 2 SafeQuant-2.3/SafeQuant/man/getMotifX.Rd | 2 SafeQuant-2.3/SafeQuant/man/getNbDetectablePeptides.Rd | 2 SafeQuant-2.3/SafeQuant/man/getNbMisCleavages.Rd | 2 SafeQuant-2.3/SafeQuant/man/getNbPeptidesPerProtein.Rd | 2 SafeQuant-2.3/SafeQuant/man/getNbSpectraPerProtein.Rd | 2 SafeQuant-2.3/SafeQuant/man/getPeptides.Rd | 2 SafeQuant-2.3/SafeQuant/man/getRTNormFactors.Rd | 2 SafeQuant-2.3/SafeQuant/man/getRatios.Rd | 4 SafeQuant-2.3/SafeQuant/man/getScoreCutOff.Rd | 2 SafeQuant-2.3/SafeQuant/man/getSignalPerCondition.Rd | 2 SafeQuant-2.3/SafeQuant/man/getTopX.Rd | 2 SafeQuant-2.3/SafeQuant/man/getUserOptions.Rd | 2 SafeQuant-2.3/SafeQuant/man/globalNormalize.Rd | 2 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| 2 SafeQuant-2.3/SafeQuant/man/setNbSpectraPerProtein.Rd | 2 SafeQuant-2.3/SafeQuant/man/sqNormalize.Rd | 2 SafeQuant-2.3/SafeQuant/man/standardise.Rd | 2 SafeQuant-2.3/SafeQuant/man/stripACs.Rd | 2 SafeQuant-2.3/SafeQuant/tests/initTestSession.R | 33 SafeQuant-2.3/SafeQuant/tests/testData/scaffold_tmt10plex_calibMix_raw.xls |only SafeQuant-2.3/SafeQuant/tests/testExpressionAnalysis.R | 116 +- SafeQuant-2.3/SafeQuant/tests/testGraphics.R | 20 SafeQuant-2.3/SafeQuant/tests/testParser.R | 40 SafeQuant-2.3/SafeQuant/tests/testSafeQuantAnalysis.R | 21 SafeQuant-2.3/SafeQuant/tests/testTMT.R | 113 ++ 105 files changed, 1801 insertions(+), 897 deletions(-)
Title: Model Based Clustering, Classification and Discriminant Analysis
Using the Mixture of Generalized Hyperbolic Distributions
Description: Carries out model-based clustering, classification and discriminant analysis using five different models. The models are all based on the generalized hyperbolic distribution.The first model 'MGHD' is the classical mixture of generalized hyperbolic distributions. The 'MGHFA' is the mixture of generalized hyperbolic factor analyzers for high dimensional data sets. The 'MSGHD', mixture of multiple scaled generalized hyperbolic distributions. The 'cMSGHD' is a 'MSGHD' with convex contour plots. The 'MCGHD', mixture of coalesced generalized hyperbolic distributions is a new more flexible model.
Author: Cristina Tortora, Aisha ElSherbiny, Ryan P. Browne, Brian C. Franczak, and Paul D. McNicholas.
Maintainer: Cristina Tortora <grikris1@gmail.com>
Diff between MixGHD versions 1.8 dated 2015-09-24 and 2.0 dated 2016-10-04
MixGHD-1.8/MixGHD/R/usedSelection.R |only MixGHD-2.0/MixGHD/DESCRIPTION | 13 - MixGHD-2.0/MixGHD/MD5 | 41 ++-- MixGHD-2.0/MixGHD/NAMESPACE | 10 - MixGHD-2.0/MixGHD/R/DA.R | 12 - MixGHD-2.0/MixGHD/R/GHD.R | 355 +++++++++++++++++------------------- MixGHD-2.0/MixGHD/R/MCGHD.R | 127 ++++++++++++ MixGHD-2.0/MixGHD/R/MGHD.R | 82 ++++++++ MixGHD-2.0/MixGHD/R/MGHFA.R | 90 +++++++++ MixGHD-2.0/MixGHD/R/MSGHD.R | 97 +++++++++ MixGHD-2.0/MixGHD/R/cMSGHD.R | 95 +++++++++ MixGHD-2.0/MixGHD/R/contourpl.R |only MixGHD-2.0/MixGHD/man/ARI.Rd | 2 MixGHD-2.0/MixGHD/man/DA.Rd | 5 MixGHD-2.0/MixGHD/man/MCGHD.Rd | 4 MixGHD-2.0/MixGHD/man/MGHD.Rd | 4 MixGHD-2.0/MixGHD/man/MGHFA.Rd | 6 MixGHD-2.0/MixGHD/man/MSGHD.Rd | 6 MixGHD-2.0/MixGHD/man/cMSGHD.Rd | 4 MixGHD-2.0/MixGHD/man/contourpl.Rd |only MixGHD-2.0/MixGHD/src |only 21 files changed, 725 insertions(+), 228 deletions(-)
Title: Graph-Constrained Estimation and Hypothesis Tests
Description: Use the graph-constrained estimation (Grace) procedure to estimate graph-guided linear regression coefficients and use the Grace/GraceI/GraceR tests to perform graph-guided hypothesis tests on the association between the response and the predictors.
Author: Sen Zhao
Maintainer: Sen Zhao <sen-zhao@sen-zhao.com>
Diff between Grace versions 0.4.1 dated 2016-09-21 and 0.4.2 dated 2016-10-04
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/cvGrace.R | 2 +- R/grace.R | 2 +- R/grace.test.R | 2 +- R/make.L.R | 2 +- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Descriptive Statistics, Transition Plots, and More
Description: Tools for making the descriptive "Table 1" used in medical
articles, a transition plot for showing changes between categories, a method for
variable selection based on the SVD, Bézier lines with arrows complementing the
ones in the 'grid' package, and more.
Author: Max Gordon <max@gforge.se>
Maintainer: Max Gordon <max@gforge.se>
Diff between Gmisc versions 1.3.1 dated 2016-02-07 and 1.4 dated 2016-10-04
DESCRIPTION | 11 MD5 | 285 - NAMESPACE | 151 NEWS | 800 +-- R/Gmisc.R | 86 R/RcppExports.R | 2 R/assert.R |only R/bezierArrowGradient.R | 604 +- R/bezierArrowSmpl.R | 348 - R/bezier_private_functions.R | 802 +-- R/boxGrobs.R |only R/copyAllNewAttributes.R | 64 R/deprecated.R | 36 R/descriptionStats.R | 940 +-- R/docx_document.R | 630 +- R/fastDoCall.R | 118 R/figCaptionNo.R | 264 - R/getDescriptionStatsBy.R | 1040 ++-- R/getPval.R | 178 R/getSvdMostInfluential.R | 298 - R/insertRowAndKeepAttr.R | 146 R/mergeDesc.R | 418 - R/mergeLists.R | 196 R/private_functions.R | 578 +- R/transitionClass.R | 2372 +++++----- R/transitionClass_helpers.R | 836 +-- R/transitionPlot.R | 1058 ++-- R/transitionPlot_helpers.R | 1272 ++--- build/vignette.rds |binary inst/doc/Descriptives.R | 274 - inst/doc/Descriptives.Rmd | 390 - inst/doc/Descriptives.html | 1624 +++--- inst/doc/Grid-based_flowcharts.R |only inst/doc/Grid-based_flowcharts.Rmd |only inst/doc/Grid-based_flowcharts.html |only inst/doc/Transition-class.R | 184 inst/doc/Transition-class.Rmd | 274 - inst/doc/Transition-class.html | 394 - inst/doc/transitionPlot.R | 230 inst/doc/transitionPlot.Rmd | 350 - inst/doc/transitionPlot.html | 431 - inst/examples/bezierArrowGradient_example.R | 60 inst/examples/bezierArrowSmpl_example.R | 44 inst/examples/connectGrob_example.R |only inst/examples/data-SCB_example.R | 60 inst/examples/fastDoCall_ex.R | 52 inst/examples/getDescriptionStatsBy_example.R | 160 inst/examples/getSvdMostInfluential_example.R | 186 inst/examples/mergeLists_example.R | 6 inst/examples/transitionClass_example.R | 52 inst/extdata/Full_test_suite.Rmd | 362 - inst/include/Gmisc.h | 64 inst/rmarkdown/docx.css | 410 - inst/rmarkdown/templates/CONSORT_v2010_docx/skeleton/skeleton.Rmd | 240 - inst/rmarkdown/templates/STROBE_v4_docx/skeleton/skeleton.Rmd | 220 man/Gmisc-deprecated.Rd | 38 man/Gmisc-package.Rd | 102 man/Transition-class.Rd | 324 - man/assert.Rd |only man/bezierArrowGradient.Rd | 188 man/bezierArrowSmpl.Rd | 154 man/box.Rd |only man/boxPropGrob.Rd |only man/calculateLinesAndArrow.Rd | 92 man/connect.Rd |only man/copyAllNewAttributes.Rd | 72 man/describeFactors.Rd | 162 man/describeMean.Rd | 136 man/describeMedian.Rd | 130 man/describeProp.Rd | 128 man/docx_document.Rd | 164 man/fastDoCall.Rd | 136 man/figCapNo.Rd | 104 man/figCapNoLast.Rd | 52 man/figCapNoNext.Rd | 52 man/getAbsoluteWidth.Rd | 68 man/getBezierAdj4Arrw.Rd | 50 man/getDescriptionStatsBy.Rd | 450 - man/getGridVal.Rd | 50 man/getPval.Rd | 158 man/getSvdMostInfluential.Rd | 294 - man/getVectorAngle.Rd | 50 man/gnrlBezierPoints.Rd | 76 man/htmlTable_latex.Rd | 56 man/insertRowAndKeepAttr.Rd | 68 man/isHorizontal.Rd | 38 man/mergeDesc.Rd | 262 - man/mergeLists.Rd | 58 man/mergeLists_internal.Rd | 42 man/prCaptionFix.Rd | 38 man/prConvertShowMissing.Rd | 46 man/prDescGetAndValidateDefaultRef.Rd | 46 man/prDescGetMissing.Rd | 82 man/prFtpHeaderStyle.Rd | 54 man/prFtpOtherChanges.Rd | 38 man/prFtpOtherRemoval.Rd | 38 man/prFtpScriptRemoval.Rd | 38 man/prGetStatistics.Rd | 114 man/prGetTextGrobCex.Rd | 38 man/prGridPlotTitle.Rd | 60 man/prPasteVec.Rd | 32 man/prPushMarginViewport.Rd | 60 man/prSetMaxWidth.Rd | 44 man/prTcMatchClr.Rd | 58 man/prTcPlotArrows.Rd | 84 man/prTcPlotBoxColumn.Rd | 58 man/prTcValidateAndPrepClr.Rd | 58 man/prTpGetBoxPositions.Rd | 72 man/prTpGetBoxPropClr.Rd | 50 man/prTpGetBoxSizedTextGrob.Rd | 48 man/prTpGetColors.Rd | 66 man/prTpPlotArrows.Rd | 102 man/prTpPlotBox.Rd | 66 man/prTpPlotBoxes.Rd | 232 man/transitionPlot.Rd | 352 - man/validateAndConvertVectorInputs.Rd | 56 src/RcppExports.cpp | 18 tests/cpp_tests/visual_line_debugging.R | 134 tests/performance/bezierArrowProfiler.R | 46 tests/testthat.R | 6 tests/testthat/Rplots.pdf |binary tests/testthat/test-bezier.R | 204 tests/testthat/test-copyAllAttributes.R | 84 tests/testthat/test-descriptionStats.R | 296 - tests/testthat/test-docx_document.R | 354 - tests/testthat/test-fastDoCall.R | 92 tests/testthat/test-figCapNo.R | 96 tests/testthat/test-fig_caption.R | 54 tests/testthat/test-getDescriptionStats.R | 948 ++- tests/testthat/test-insertRowAndKeepAttr.R | 40 tests/testthat/test-mergeLists.R | 132 tests/testthat/test-transitionClass.R | 310 - tests/visual_tests/FTP_test/FTP_test.Rmd | 296 - tests/visual_tests/FTP_test/Setup_and_munge.R | 124 tests/visual_tests/Full_test_suite.Rmd | 362 - tests/visual_tests/Highlighting_test.Rmd | 48 tests/visual_tests/MathJax_test.Rmd | 44 tests/visual_tests/Max_width_test.Rmd | 28 tests/visual_tests/bezierArrowGradient_vtests.R | 126 tests/visual_tests/bezierArrowRcpp_vtests.R | 170 tests/visual_tests/bezierArrowSmpl_vtests.R | 210 tests/visual_tests/tansitionPlot_vtests.R | 344 - tests/visual_tests/test-bezier-adjustment.R | 262 - tests/visual_tests/transitionClass_vtest.R | 78 vignettes/Descriptives.Rmd | 390 - vignettes/Grid-based_flowcharts.Rmd |only vignettes/Transition-class.Rmd | 274 - vignettes/custom.css | 324 - vignettes/transitionPlot.Rmd | 350 - 149 files changed, 15898 insertions(+), 15730 deletions(-)
Title: Multi-Purpose Core Subset Selection
Description: Core Hunter is a tool to sample diverse, representative subsets from large germplasm
collections, with minimum redundancy. Such so-called core collections have applications in plant
breeding and genetic resource management in general. Core Hunter can construct cores based on
genetic marker data, phenotypic traits or precomputed distance matrices, optimizing one of many
provided evaluation measures depending on the precise purpose of the core (e.g. high diversity,
representativeness, or allelic richness). In addition, multiple measures can be simultaneously
optimized as part of a weighted index to bring the different perspectives closer together.
The Core Hunter library is implemented in Java 8 as an open source project (see
<http://www.corehunter.org>).
Author: Herman De Beukelaer [aut, cre],
Guy Davenport [aut],
Veerle Fack [ths]
Maintainer: Herman De Beukelaer <herman.debeukelaer@gmail.com>
Diff between corehunter versions 3.0.0 dated 2016-10-03 and 3.0.1 dated 2016-10-04
corehunter-3.0.0/corehunter/R/onLoad.R |only corehunter-3.0.1/corehunter/DESCRIPTION | 26 ++++++++++++++------------ corehunter-3.0.1/corehunter/MD5 | 14 +++++++------- corehunter-3.0.1/corehunter/NEWS.md | 10 ++++++++-- corehunter-3.0.1/corehunter/R/corehunter.R | 10 +++++++++- corehunter-3.0.1/corehunter/R/java.R | 22 ++++++++-------------- corehunter-3.0.1/corehunter/R/zzz.R |only corehunter-3.0.1/corehunter/README.md | 7 +++++-- corehunter-3.0.1/corehunter/man/corehunter.Rd | 10 +++++++++- 9 files changed, 60 insertions(+), 39 deletions(-)
Title: Methods for Changepoint Detection
Description: Implements various mainstream and specialised changepoint methods for finding single and multiple changepoints within data. Many popular non-parametric and frequentist methods are included. The cpt.mean(), cpt.var(), cpt.meanvar() functions should be your first point of call.
Author: Rebecca Killick [aut, cre],
Kaylea Haynes [aut],
Idris Eckley [ths, aut],
Paul Fearnhead [ctb, ths],
Jamie Lee [ctr]
Maintainer: Rebecca Killick <r.killick@lancs.ac.uk>
Diff between changepoint versions 2.2.1 dated 2016-02-26 and 2.2.2 dated 2016-10-04
DESCRIPTION | 10 MD5 | 43 ++- NAMESPACE | 1 NEWS | 16 + R/PELT_one_func_minseglen.R | 4 R/cpt.R | 5 R/cpt.class.R | 448 ++++++++++++++++++++++++++++++---------- R/exp.R | 10 R/gamma.R | 11 R/multiple.nonparametric.R | 17 + R/multiple.norm.R | 4 R/poisson.R | 10 R/single.nonparametric.R | 2 R/single.norm.R | 14 - R/zzz.R | 2 inst/CITATION | 2 man/BINSEG.Rd |only man/PELT.Rd |only man/changepoint-package.Rd | 4 man/class_input.Rd |only man/decision.Rd |only man/logLik-methods.Rd | 3 man/penalty_decision.Rd |only src/BinSeg_one_func_minseglen.c | 3 tests/testthat/test-examples.R | 11 25 files changed, 455 insertions(+), 165 deletions(-)
Title: Client for the YouTube API
Description: Get comments posted on YouTube videos, information on how many
times a video has been liked, search for videos with particular content, and
much more. You can also scrape captions from a few videos. To learn more about
the YouTube API, see <https://developers.google.com/youtube/v3/>.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between tuber versions 0.3.0 dated 2016-08-04 and 0.4.0 dated 2016-10-04
DESCRIPTION | 6 +- MD5 | 68 +++++++++++++------------- NAMESPACE | 2 NEWS.md | 7 ++ R/get_channel_stats.R | 2 R/get_comment_threads.R |only R/get_comments.R | 27 +++++++--- R/get_playlist_items.R | 24 ++++++--- R/get_playlists.R | 24 ++++++--- R/get_stats.R | 4 - R/get_subscriptions.R | 29 ++++++++--- R/list_abuse_report_reasons.R | 2 R/list_channel_activities.R | 25 +++++++-- R/list_channel_resources.R | 35 +++++++++---- R/list_channel_sections.R | 20 +++++-- R/list_channel_videos.R |only R/list_guidecats.R | 24 +++++++-- R/list_videocats.R | 21 +++++--- R/yt_oauth.R | 4 - inst/doc/tuber-ex.R | 24 +++++++++ inst/doc/tuber-ex.Rmd | 27 ++++++++++ inst/doc/tuber-ex.html | 28 +++++++++- man/get_comment_threads.Rd |only man/get_comments.Rd | 16 +++--- man/get_playlist_items.Rd | 10 ++- man/get_playlists.Rd | 12 +++- man/get_subscriptions.Rd | 14 +++-- man/list_channel_activities.Rd | 15 +++-- man/list_channel_resources.Rd | 17 ++++-- man/list_channel_sections.Rd | 11 +++- man/list_channel_videos.Rd |only man/list_guidecats.Rd | 10 ++- man/list_videocats.Rd | 12 +++- tests/testthat/test-list-channel-activities.R | 2 tests/testthat/test-list-channel-sections.R | 2 vignettes/tuber-ex.Rmd | 27 ++++++++++ vignettes/tuber-ex.md | 29 ++++++++++- 37 files changed, 435 insertions(+), 145 deletions(-)
Title: Subgroup Identification Based on Differential Effect Search
Description: Provides function to apply "Subgroup Identification based on Differential Effect Search" (SIDES) method proposed by Lipkovich et al. (2011) <doi:10.1002/sim.4289>.
Author: Marie-Karelle Riviere
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>
Diff between SIDES versions 1.6 dated 2016-09-27 and 1.7 dated 2016-10-04
DESCRIPTION | 8 +- MD5 | 10 +-- R/IDENTIFICATION.R | 8 +- R/SIDES_MAIN.R | 144 +++++++++++++++++++++++++++++++++++++++++++++------ R/TEST_STAT_PVAL.R | 3 + man/SIDES-package.Rd | 4 - 6 files changed, 146 insertions(+), 31 deletions(-)
Title: Rank Preserving Structural Failure Time Models
Description: Implements methods described by the paper Robins and Tsiatis (1991) <DOI:10.1080/03610929108830654>. These use g-estimation to estimate the causal effect of a treatment in a two-armed randomised control trial where non-compliance exists and is measured, under an assumption of an accelerated failure time model and no unmeasured confounders.
Author: Simon Bond [aut, cre] (primary author of code, secondary author of
vignette),
Annabel Allison [aut] (primary author of vignette, secondary author of
code)
Maintainer: Simon Bond <simon.bond@addenbrookes.nhs.uk>
Diff between rpsftm versions 1.0.0 dated 2016-09-13 and 1.0.1 dated 2016-10-04
DESCRIPTION | 16 MD5 | 73 +-- NAMESPACE | 34 - NEWS.md |only R/data.R | 42 - R/est_eqn.R | 78 +-- R/extract_z.R | 116 ++--- R/plot.rpsftm.R | 46 +- R/print.rpsftm.R | 50 +- R/rand.R | 46 +- R/rpsftm-package.R | 36 - R/rpsftm.R | 594 +++++++++++++-------------- R/summary.rpsftm.R | 58 +- R/terms.inner.R | 54 +- R/untreated.R | 94 ++-- README.md | 66 +-- build/vignette.rds |binary inst/doc/rpsftm_vignette.R | 138 +++--- inst/doc/rpsftm_vignette.Rmd | 578 +++++++++++++-------------- inst/doc/rpsftm_vignette.html | 724 +++++++++++++++++----------------- man/est_eqn.Rd | 80 +-- man/extract_z.Rd | 88 ++-- man/immdef.Rd | 62 +- man/plot.rpsftm.Rd | 46 +- man/print.rpsftm.Rd | 46 +- man/rand.Rd | 48 +- man/rpsftm-package.Rd | 52 +- man/rpsftm.Rd | 178 ++++---- man/summary.rpsftm.Rd | 46 +- man/terms.inner.Rd | 40 - man/untreated.Rd | 70 +-- tests/testthat.R | 8 tests/testthat/test_errors.R | 360 ++++++++-------- tests/testthat/test_rpsftm.R | 536 ++++++++++++------------- vignettes/dev/adjustedHR.Rmd | 216 +++++----- vignettes/dev/rpsftm_vignette_v1.Rmd | 574 +++++++++++++-------------- vignettes/dev/rpsftm_vignette_v2.Rmd | 744 +++++++++++++++++------------------ vignettes/rpsftm_vignette.Rmd | 578 +++++++++++++-------------- 38 files changed, 3310 insertions(+), 3305 deletions(-)
Title: Goodness of Fit Tests for High-Dimensional Linear Regression
Models
Description: Performs goodness of fits tests for both high and low-dimensional linear models.
It can test for a variety of model misspecifications including nonlinearity and heteroscedasticity.
In addition one can test the significance of potentially large groups of variables, and also
produce p-values for the significance of individual variables in high-dimensional linear
regression.
Author: Rajen Shah [aut, cre],
Peter Buhlmann [aut]
Maintainer: Rajen Shah <r.shah@statslab.cam.ac.uk>
Diff between RPtests versions 0.1.0 dated 2016-06-20 and 0.1.1 dated 2016-10-04
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/RPtest_single.R | 4 ++-- R/RcppExports.R | 2 +- man/RPtest_single.Rd | 2 +- src/RcppExports.cpp | 10 +++++----- 6 files changed, 17 insertions(+), 17 deletions(-)
Title: An API Generator for R
Description: Gives the ability to automatically generate and serve an HTTP API
from R functions using the annotations in the R documentation around your
functions.
Author: Trestle Technology, LLC [aut],
Jeff Allen [cre],
Frans van Dunné [ctb]
Maintainer: Jeff Allen <cran@trestletech.com>
Diff between plumber versions 0.2.4 dated 2016-04-14 and 0.3.1 dated 2016-10-04
plumber-0.2.4/plumber/tests/testthat/files/appender.R |only plumber-0.2.4/plumber/tests/testthat/files/filters-example.R |only plumber-0.2.4/plumber/tests/testthat/files/github-plumber.R |only plumber-0.3.1/plumber/DESCRIPTION | 27 ++-- plumber-0.3.1/plumber/MD5 | 53 ++++++--- plumber-0.3.1/plumber/NEWS.md | 17 +++ plumber-0.3.1/plumber/R/globals.R |only plumber-0.3.1/plumber/R/plumber.R | 42 ++++--- plumber-0.3.1/plumber/R/post-body.R | 25 ++++ plumber-0.3.1/plumber/R/query-string.R | 10 - plumber-0.3.1/plumber/R/response.R | 4 plumber-0.3.1/plumber/R/serializer-content-type.R |only plumber-0.3.1/plumber/R/serializer-html.R | 18 +-- plumber-0.3.1/plumber/R/serializer-json.R | 22 ++-- plumber-0.3.1/plumber/R/serializer-xml.R | 14 +- plumber-0.3.1/plumber/R/serializer.R | 18 ++- plumber-0.3.1/plumber/README.md | 18 +++ plumber-0.3.1/plumber/inst/examples/01-append |only plumber-0.3.1/plumber/inst/examples/02-filters |only plumber-0.3.1/plumber/inst/examples/03-github |only plumber-0.3.1/plumber/inst/examples/04-mean-sum |only plumber-0.3.1/plumber/inst/examples/05-static |only plumber-0.3.1/plumber/inst/examples/07-mailgun/mailgun.R | 2 plumber-0.3.1/plumber/inst/examples/08-identity |only plumber-0.3.1/plumber/inst/examples/09-content-type |only plumber-0.3.1/plumber/inst/hosted |only plumber-0.3.1/plumber/tests/testthat/files/content-type.R |only plumber-0.3.1/plumber/tests/testthat/files/serializer.R | 18 ++- plumber-0.3.1/plumber/tests/testthat/test-content-type.R |only plumber-0.3.1/plumber/tests/testthat/test-postbody.R |only plumber-0.3.1/plumber/tests/testthat/test-routing.R | 6 - plumber-0.3.1/plumber/tests/testthat/test-serializer-json.R | 4 plumber-0.3.1/plumber/tests/testthat/test-serializer.R | 60 ++++++++--- 33 files changed, 245 insertions(+), 113 deletions(-)
Title: Multi-State Markov and Hidden Markov Models in Continuous Time
Description: Functions for fitting continuous-time Markov and hidden
Markov multi-state models to longitudinal data. Designed for
processes observed at arbitrary times in continuous time (panel data)
but some other observation schemes are supported. Both Markov
transition rates and the hidden Markov output process can be modelled
in terms of covariates, which may be constant or piecewise-constant
in time.
Author: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between msm versions 1.6.1 dated 2016-03-09 and 1.6.4 dated 2016-10-04
msm-1.6.1/msm/src/doc |only msm-1.6.1/msm/vignettes/_region_.tex |only msm-1.6.4/msm/ChangeLog | 22 +++++ msm-1.6.4/msm/DESCRIPTION | 8 - msm-1.6.4/msm/MD5 | 123 +++++++++++++++++++++--------- msm-1.6.4/msm/R/pearson.R | 4 msm-1.6.4/msm/R/utils.R | 13 ++- msm-1.6.4/msm/build/vignette.rds |binary msm-1.6.4/msm/inst/NEWS | 23 +++++ msm-1.6.4/msm/inst/doc/msm-manual.R | 82 ++++++++++---------- msm-1.6.4/msm/inst/doc/msm-manual.pdf |binary msm-1.6.4/msm/man/surface.msm.Rd | 3 msm-1.6.4/msm/tests/testthat/test_utils.r | 1 msm-1.6.4/msm/vignettes/Sweave-local.sty |only msm-1.6.4/msm/vignettes/figures |only msm-1.6.4/msm/vignettes/msm-manual.Rnw |only msm-1.6.4/msm/vignettes/msm.bib |only 17 files changed, 196 insertions(+), 83 deletions(-)
Title: Fast and Simple MongoDB Client for R
Description: High-performance MongoDB client based on 'libmongoc' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, SSL
encryption and SASL authentication. The vignette gives a brief overview
of the available methods in the package.
Author: Jeroen Ooms [aut, cre],
MongoDB, Inc [cph] (Author of mongo-c-driver)
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between mongolite versions 0.9 dated 2016-09-26 and 0.9.1 dated 2016-10-04
DESCRIPTION | 8 ++++---- MD5 | 24 +++++++++++++----------- NAMESPACE | 2 ++ NEWS | 5 ++++- R/mongo.R | 16 ++++++++++++---- R/object.R | 31 +++++++++++++++++++++---------- R/ssl.R |only inst/doc/intro.Rmd | 2 +- inst/doc/intro.html | 6 +++--- man/mongo.Rd | 4 +++- man/ssl_options.Rd |only src/client.c | 36 ++++++++++++++++++++++++++++++++++-- src/collection.c | 5 +++-- vignettes/intro.Rmd | 2 +- 14 files changed, 101 insertions(+), 40 deletions(-)
Title: MINimal VALidation for Stoichiometric Reactions
Description: For a given set of stoichiometric reactions, this package
evaluates the mass and charge balance, extracts all reactants, products, orphan
metabolites, metabolite names and compartments. Also are included some options
to write models in TSV and SBML formats.
Author: Daniel Osorio [aut,cre], Janneth Gonzalez [aut], Andres Pinzon-Velasco [aut].
Maintainer: Daniel Osorio <dcosorioh@unal.edu.co>
Diff between minval versions 0.4 dated 2016-05-18 and 0.5 dated 2016-10-04
minval-0.4/minval/R/chebi.candidates.R |only minval-0.4/minval/R/chebi.formula.R |only minval-0.4/minval/R/chebi.id.R |only minval-0.4/minval/R/is.chebi.R |only minval-0.4/minval/R/is.validsyntax.R |only minval-0.4/minval/R/minval-internal.R |only minval-0.4/minval/R/orphan.products.R |only minval-0.4/minval/R/orphan.reactants.R |only minval-0.4/minval/R/toChEBI.R |only minval-0.4/minval/R/unbalanced.R |only minval-0.4/minval/data |only minval-0.4/minval/inst/tests/runit.chebi.formula.R |only minval-0.4/minval/inst/tests/runit.is.chebi.R |only minval-0.4/minval/inst/tests/runit.is.validsyntax.R |only minval-0.4/minval/inst/tests/runit.orphan.products.R |only minval-0.4/minval/inst/tests/runit.orphan.reactants.R |only minval-0.4/minval/inst/tests/runit.toChEBI.R |only minval-0.4/minval/inst/tests/runit.unbalanced.R |only minval-0.4/minval/man/chebi.Rd |only minval-0.4/minval/man/chebi.candidates.Rd |only minval-0.4/minval/man/chebi.formula.Rd |only minval-0.4/minval/man/chebi.id.Rd |only minval-0.4/minval/man/glugln.Rd |only minval-0.4/minval/man/is.chebi.Rd |only minval-0.4/minval/man/is.validsyntax.Rd |only minval-0.4/minval/man/minval-package.Rd |only minval-0.4/minval/man/orphan.products.Rd |only minval-0.4/minval/man/orphan.reactants.Rd |only minval-0.4/minval/man/toChEBI.Rd |only minval-0.4/minval/man/unbalanced.Rd |only minval-0.5/minval/DESCRIPTION | 18 +- minval-0.5/minval/MD5 | 95 ++++++-------- minval-0.5/minval/NAMESPACE | 26 +++ minval-0.5/minval/NEWS | 5 minval-0.5/minval/R/compartments.R | 49 +++++-- minval-0.5/minval/R/convert2sbml.R |only minval-0.5/minval/R/convert2sbmlR.R |only minval-0.5/minval/R/getChEBI.R |only minval-0.5/minval/R/isBalanced.R |only minval-0.5/minval/R/isValidSyntax.R |only minval-0.5/minval/R/mapReactions.R |only minval-0.5/minval/R/metabolites.R | 71 +++++++--- minval-0.5/minval/R/minvalInternal.R |only minval-0.5/minval/R/orphanProducts.R |only minval-0.5/minval/R/orphanReactants.R |only minval-0.5/minval/R/products.R | 66 +++++++-- minval-0.5/minval/R/reactants.R | 62 ++++++--- minval-0.5/minval/R/stoichiometricMatrix.R |only minval-0.5/minval/R/writeTSVmod.R |only minval-0.5/minval/R/xls2sbml.R |only minval-0.5/minval/README.md | 54 ++++--- minval-0.5/minval/inst/extdata |only minval-0.5/minval/inst/tests/runit.compartments.R | 2 minval-0.5/minval/inst/tests/runit.isBalanced.R |only minval-0.5/minval/inst/tests/runit.isValidSyntax.R |only minval-0.5/minval/inst/tests/runit.metabolites.R | 2 minval-0.5/minval/inst/tests/runit.orphanProducts.R |only minval-0.5/minval/inst/tests/runit.orphanReactants.R |only minval-0.5/minval/inst/tests/runit.products.R | 2 minval-0.5/minval/inst/tests/runit.reactants.R | 3 minval-0.5/minval/inst/tests/runit.stoichiometricMatrix.R |only minval-0.5/minval/man/compartments.Rd | 58 +++++--- minval-0.5/minval/man/convert2sbml.Rd |only minval-0.5/minval/man/convert2sbmlR.Rd |only minval-0.5/minval/man/getChEBI.Rd |only minval-0.5/minval/man/isBalanced.Rd |only minval-0.5/minval/man/isValidSyntax.Rd |only minval-0.5/minval/man/mapReactions.Rd |only minval-0.5/minval/man/metabolites.Rd | 83 +++++++----- minval-0.5/minval/man/orphanProducts.Rd |only minval-0.5/minval/man/orphanReactants.Rd |only minval-0.5/minval/man/products.Rd | 64 +++++---- minval-0.5/minval/man/reactants.Rd | 65 +++++---- minval-0.5/minval/man/stoichiometricMatrix.Rd |only minval-0.5/minval/man/writeTSVmod.Rd |only minval-0.5/minval/man/xls2sbml.Rd |only 76 files changed, 476 insertions(+), 249 deletions(-)
Title: A Package for Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data, in
particular representation, manipulation and simulation of multistate
data - the Lexis suite of functions, which includes interfaces to
'mstate', 'etm' and 'cmprsk' packages.
Also contains functions for Age-Period-Cohort and Lee-Carter
modeling and a function for interval censored data and some useful
functions for tabulation and plotting, as well some epidemiological
datasets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <bxc@steno.dk>
Diff between Epi versions 2.0 dated 2016-01-06 and 2.7 dated 2016-10-04
Epi-2.0/Epi/inst/doc/sim-Lexis.R |only Epi-2.0/Epi/inst/doc/sim-Lexis.pdf |only Epi-2.7/Epi/CHANGES | 54 ++++++ Epi-2.7/Epi/DESCRIPTION | 20 +- Epi-2.7/Epi/MD5 | 72 ++++---- Epi-2.7/Epi/NAMESPACE | 24 ++ Epi-2.7/Epi/R/Cplot.R | 14 + Epi-2.7/Epi/R/LCa.fit.R |only Epi-2.7/Epi/R/Ns.r | 228 ++++++++++++++++++-------- Epi-2.7/Epi/R/apc.LCa.R |only Epi-2.7/Epi/R/apc.fit.R | 66 ++++--- Epi-2.7/Epi/R/boxes.MS.R | 4 Epi-2.7/Epi/R/cal.yr.R | 8 Epi-2.7/Epi/R/clear.R | 28 +-- Epi-2.7/Epi/R/erl.R |only Epi-2.7/Epi/R/lexis.R | 29 ++- Epi-2.7/Epi/R/rm.tr.R |only Epi-2.7/Epi/R/summary.Lexis.r | 36 ++-- Epi-2.7/Epi/build/vignette.rds |binary Epi-2.7/Epi/inst/CITATION | 4 Epi-2.7/Epi/inst/doc/Follow-up.R | 318 ++++++++++++++++++------------------- Epi-2.7/Epi/inst/doc/Follow-up.pdf |binary Epi-2.7/Epi/inst/doc/index.html | 4 Epi-2.7/Epi/inst/doc/simLexis.R | 24 +- Epi-2.7/Epi/inst/doc/simLexis.pdf |binary Epi-2.7/Epi/inst/doc/simLexis.rnw | 1 Epi-2.7/Epi/man/LCa.fit.Rd |only Epi-2.7/Epi/man/Ns.Rd | 65 ++++++- Epi-2.7/Epi/man/Relevel.Rd | 1 Epi-2.7/Epi/man/apc.LCa.Rd |only Epi-2.7/Epi/man/apc.fit.Rd | 107 ++++++++---- Epi-2.7/Epi/man/boxes.MS.Rd | 3 Epi-2.7/Epi/man/ci.lin.Rd | 1 Epi-2.7/Epi/man/erl.Rd |only Epi-2.7/Epi/man/foreign.Lexis.Rd | 2 Epi-2.7/Epi/man/gen.exp.Rd | 84 +++++---- Epi-2.7/Epi/man/lls.Rd | 5 Epi-2.7/Epi/man/rm.tr.Rd |only Epi-2.7/Epi/man/subset.Lexis.Rd | 2 Epi-2.7/Epi/man/summary.Lexis.rd | 5 Epi-2.7/Epi/vignettes/index.html | 4 Epi-2.7/Epi/vignettes/simLexis.rnw | 1 42 files changed, 763 insertions(+), 451 deletions(-)
Title: Modeling Correlational Magnitude Transformations in
Discretization Contexts
Description: Modeling the correlation transitions under specified distributional assumptions within the realm of discretization in the context of the latency and threshold concepts.
Author: Rawan Allozi, Hakan Demirtas
Maintainer: Rawan Allozi <ralloz2@uic.edu>
Diff between CorrToolBox versions 1.1 dated 2016-07-21 and 1.2 dated 2016-10-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/mps2cps.R | 6 ++++-- man/CorrToolBox-package.Rd | 4 ++-- man/mps2cps.Rd | 2 +- 5 files changed, 15 insertions(+), 13 deletions(-)
Title: A ggplot2 Extension to Visualize Two Variables per Color
Aesthetic Through Color Space Projections
Description: A ggplot2 extension to visualize two
variables through one color aesthetic via mapping to a color space
projection. With this technique for 2-D color mapping, one can create a
dichotomous choropleth in R as well as other visualizations with
bivariate color scales. Includes two new scales and a new guide for ggplot2.
Author: William Murphy [aut, cre],
Hadley Wickham [ctb] (Original author for copied and derived code),
Winston Chang [ctb] (Original author for copied and derived code)
Maintainer: William Murphy <william.murphy.rd@gmail.com>
Diff between colorplaner versions 0.1.1 dated 2016-09-21 and 0.1.2 dated 2016-10-04
DESCRIPTION | 8 - MD5 | 19 +- NEWS.md | 5 build/vignette.rds |binary inst/doc/colorplaner.R | 108 +++++++++++----- inst/doc/colorplaner.Rmd | 269 +++++++++++++++++++++++++++++++--------- inst/doc/colorplaner.html | 92 ++++++++----- inst/doc/other_projections.R |only inst/doc/other_projections.Rmd | 138 ++++++++++++++++++++ inst/doc/other_projections.html | 114 ++++++++++++++++ vignettes/colorplaner.Rmd | 10 - 11 files changed, 620 insertions(+), 143 deletions(-)
Title: Backward Pipe Operator
Description: Provides a backward-pipe operator for 'magrittr' (%<%) or
'pipeR' (%<<%) that allows for a performing operations from right-to-left.
This indispensable for writing clear code where there is natural
right-to-left ordering common with nested structures
and hierarchies such as trees/directories or markup languages such as HTML
and XML.
Author: Christopher Brown [cre, aut],
Decision Patterns [cph]
Maintainer: Christopher Brown <chris.brown@decisionpatterns.com>
Diff between backpipe versions 0.1.5 dated 2015-10-21 and 0.1.8.1 dated 2016-10-04
DESCRIPTION | 19 ++++---- LICENSE | 2 MD5 | 20 ++++---- NAMESPACE | 2 NEWS | 5 ++ README.md | 110 +++++++++++++++++++++++++++++++++++-------------- inst/doc/backpipe.Rmd | 103 ++++++++++++++++++++++++++++++++------------- inst/doc/backpipe.html | 79 ++++++++++++++++++++++++----------- man/backpipe.Rd | 9 ++-- man/backpipes.Rd | 33 +++++++------- vignettes/backpipe.Rmd | 103 ++++++++++++++++++++++++++++++++------------- 11 files changed, 328 insertions(+), 157 deletions(-)