Title: Trajectory Miner: a Toolbox for Exploring and Rendering
Sequences
Description: Toolbox for the manipulation, description and rendering of sequences, and more generally the mining of sequence data in the field of social sciences. Although the toolbox is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Author: Alexis Gabadinho [aut, cph],
Matthias Studer [aut, cph],
Nicolas Muller [aut],
Reto Buergin [aut],
Gilbert Ritschard [aut, cre, cph]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineR versions 1.8-12 dated 2016-06-24 and 1.8-13 dated 2016-10-05
TraMineR-1.8-12/TraMineR/src/src |only TraMineR-1.8-12/TraMineR/vignettes/Graphiques |only TraMineR-1.8-13/TraMineR/DESCRIPTION | 8 - TraMineR-1.8-13/TraMineR/MD5 | 54 +--------- TraMineR-1.8-13/TraMineR/NEWS | 12 ++ TraMineR-1.8-13/TraMineR/inst/CITATION | 2 TraMineR-1.8-13/TraMineR/inst/doc/TraMineR-state-sequence.pdf |binary TraMineR-1.8-13/TraMineR/man/TraMineR-package.Rd | 8 - TraMineR-1.8-13/TraMineR/src/eventseq.cpp | 2 9 files changed, 27 insertions(+), 59 deletions(-)
Title: General Purpose R Interface to 'Solr'
Description: Provides a set of functions for querying and parsing data
from 'Solr' (<http://lucene.apache.org/solr>) 'endpoints' (local and
remote), including search, 'faceting', 'highlighting', 'stats', and
'more like this'. In addition, some functionality is included for
creating, deleting, and updating documents in a 'Solr' 'database'.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between solrium versions 0.3.0 dated 2016-02-10 and 0.4.0 dated 2016-10-05
solrium-0.3.0/solrium/R/parsers.r |only solrium-0.4.0/solrium/DESCRIPTION | 12 - solrium-0.4.0/solrium/MD5 | 101 ++++++++-------- solrium-0.4.0/solrium/NAMESPACE | 27 ++-- solrium-0.4.0/solrium/NEWS.md | 15 ++ solrium-0.4.0/solrium/R/add.R | 9 - solrium-0.4.0/solrium/R/commit.R | 38 +++--- solrium-0.4.0/solrium/R/config_get.R | 66 +++++----- solrium-0.4.0/solrium/R/config_params.R | 2 solrium-0.4.0/solrium/R/connect.R | 2 solrium-0.4.0/solrium/R/core_split.R | 4 solrium-0.4.0/solrium/R/delete.R | 2 solrium-0.4.0/solrium/R/optimize.R | 4 solrium-0.4.0/solrium/R/parsers.R |only solrium-0.4.0/solrium/R/ping.R | 44 +++--- solrium-0.4.0/solrium/R/solr_all.r | 17 +- solrium-0.4.0/solrium/R/solr_facet.r | 60 ++++++--- solrium-0.4.0/solrium/R/solr_get.R | 18 +- solrium-0.4.0/solrium/R/solr_group.r | 67 +++++++--- solrium-0.4.0/solrium/R/solr_highlight.r | 15 +- solrium-0.4.0/solrium/R/solr_mlt.r | 35 +++-- solrium-0.4.0/solrium/R/solr_search.r | 26 ++-- solrium-0.4.0/solrium/R/solr_stats.r | 21 +-- solrium-0.4.0/solrium/R/solrium-package.R | 34 ++--- solrium-0.4.0/solrium/R/update_csv.R | 24 +-- solrium-0.4.0/solrium/R/zzz.r | 10 + solrium-0.4.0/solrium/build/vignette.rds |binary solrium-0.4.0/solrium/man/add.Rd | 9 - solrium-0.4.0/solrium/man/collapse_pivot_names.Rd | 6 solrium-0.4.0/solrium/man/commit.Rd | 12 - solrium-0.4.0/solrium/man/config_get.Rd | 9 - solrium-0.4.0/solrium/man/delete.Rd | 2 solrium-0.4.0/solrium/man/optimize.Rd | 2 solrium-0.4.0/solrium/man/ping.Rd | 21 ++- solrium-0.4.0/solrium/man/pivot_flatten_tabular.Rd | 8 - solrium-0.4.0/solrium/man/solr_all.Rd | 4 solrium-0.4.0/solrium/man/solr_facet.Rd | 22 ++- solrium-0.4.0/solrium/man/solr_get.Rd | 8 - solrium-0.4.0/solrium/man/solr_group.Rd | 53 ++++++-- solrium-0.4.0/solrium/man/solr_mlt.Rd | 20 +-- solrium-0.4.0/solrium/man/solr_parse.Rd | 14 -- solrium-0.4.0/solrium/man/solr_search.Rd | 14 +- solrium-0.4.0/solrium/man/solr_stats.Rd | 4 solrium-0.4.0/solrium/man/solrium-package.Rd | 25 ++- solrium-0.4.0/solrium/man/update_csv.Rd | 6 solrium-0.4.0/solrium/tests/testthat/test-core_create.R | 2 solrium-0.4.0/solrium/tests/testthat/test-errors.R | 2 solrium-0.4.0/solrium/tests/testthat/test-ping.R | 2 solrium-0.4.0/solrium/tests/testthat/test-solr_all.R |only solrium-0.4.0/solrium/tests/testthat/test-solr_facet.r | 32 ++++- solrium-0.4.0/solrium/tests/testthat/test-solr_mlt.r | 20 +-- solrium-0.4.0/solrium/tests/testthat/test-solr_search.r | 68 ++++++++++ solrium-0.4.0/solrium/tests/testthat/test-solr_stats.r | 50 +++++++ 53 files changed, 681 insertions(+), 387 deletions(-)
Title: Classification Based on Association Rules
Description: Provides a function to build an association rule-based classifier for data frames, and to classify incoming data frames using such a classifier.
Author: Ian Johnson [aut, cre, cph],
Michael Hahsler [ctb]
Maintainer: Ian Johnson <ianjjohnson@icloud.com>
Diff between arulesCBA versions 1.0.1 dated 2016-09-26 and 1.0.2 dated 2016-10-05
DESCRIPTION | 20 ++++++++++++-------- MD5 | 8 ++++---- R/classifier.R | 22 ++-------------------- inst/doc/arulesCBA.pdf |binary man/classifier.Rd | 3 ++- 5 files changed, 20 insertions(+), 33 deletions(-)
Title: A Simple Data Science Challenge System
Description: A simple data science challenge system using R Markdown and Dropbox <https://www.dropbox.com/>.
It requires no network configuration, does not depend on external platforms
like e.g. Kaggle <https://www.kaggle.com/> and can be easily installed on a personal computer.
Author: Adrien Todeschini [aut, cre],
Robin Genuer [ctb]
Maintainer: Adrien Todeschini <adrien.todeschini@gmail.com>
Diff between rchallenge versions 1.1.1 dated 2015-11-26 and 1.2.0 dated 2016-10-05
rchallenge-1.1.1/rchallenge/R/dev_utils.r |only rchallenge-1.2.0/rchallenge/DESCRIPTION | 6 - rchallenge-1.2.0/rchallenge/MD5 | 14 ++-- rchallenge-1.2.0/rchallenge/NEWS.md |only rchallenge-1.2.0/rchallenge/R/new.r | 19 +++-- rchallenge-1.2.0/rchallenge/R/rchallenge.r | 21 ++++-- rchallenge-1.2.0/rchallenge/README.md | 59 +++++++++--------- rchallenge-1.2.0/rchallenge/man/publish.Rd | 17 +++-- rchallenge-1.2.0/rchallenge/man/rchallenge-package.Rd | 22 ++++-- 9 files changed, 95 insertions(+), 63 deletions(-)
Title: Network Visualization using 'vis.js' Library
Description: Provides an R interface to the 'vis.js' JavaScript charting
library. It allows an interactive visualization of networks.
Author: Almende B.V. [aut, cph] (vis.js library in htmlwidgets/lib,
http://visjs.org, http://www.almende.com/home),
Benoit Thieurmel [aut, cre] (R interface)
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>
Diff between visNetwork versions 1.0.1 dated 2016-06-20 and 1.0.2 dated 2016-10-05
visNetwork-1.0.1/visNetwork/inst/htmlwidgets/lib/vis/vis-network.min.js |only visNetwork-1.0.2/visNetwork/DESCRIPTION | 8 visNetwork-1.0.2/visNetwork/MD5 | 174 +++--- visNetwork-1.0.2/visNetwork/NAMESPACE | 2 visNetwork-1.0.2/visNetwork/NEWS | 15 visNetwork-1.0.2/visNetwork/R/visConfigure.R | 2 visNetwork-1.0.2/visNetwork/R/visDocumentation.R | 2 visNetwork-1.0.2/visNetwork/R/visEdges.R | 22 visNetwork-1.0.2/visNetwork/R/visExport.R | 2 visNetwork-1.0.2/visNetwork/R/visFit.R | 9 visNetwork-1.0.2/visNetwork/R/visFocus.R | 2 visNetwork-1.0.2/visNetwork/R/visGetEdges.R |only visNetwork-1.0.2/visNetwork/R/visGetNodes.R |only visNetwork-1.0.2/visNetwork/R/visGetPositions.R | 2 visNetwork-1.0.2/visNetwork/R/visGroups.R | 2 visNetwork-1.0.2/visNetwork/R/visHierarchicalLayout.R | 2 visNetwork-1.0.2/visNetwork/R/visIgraph.R | 2 visNetwork-1.0.2/visNetwork/R/visIgraphLayout.R | 4 visNetwork-1.0.2/visNetwork/R/visInteraction.R | 4 visNetwork-1.0.2/visNetwork/R/visLayout.R | 2 visNetwork-1.0.2/visNetwork/R/visLegend.R | 2 visNetwork-1.0.2/visNetwork/R/visMoveNode.R | 2 visNetwork-1.0.2/visNetwork/R/visNetwork.R | 77 ++ visNetwork-1.0.2/visNetwork/R/visNetworkEvents.R | 11 visNetwork-1.0.2/visNetwork/R/visNetworkProxy.R | 3 visNetwork-1.0.2/visNetwork/R/visNodes.R | 1 visNetwork-1.0.2/visNetwork/R/visOptions.R | 57 +- visNetwork-1.0.2/visNetwork/R/visPhysics.R | 2 visNetwork-1.0.2/visNetwork/R/visRedraw.R | 2 visNetwork-1.0.2/visNetwork/R/visRemoveEdges.R | 10 visNetwork-1.0.2/visNetwork/R/visRemoveNodes.R | 13 visNetwork-1.0.2/visNetwork/R/visSave.R | 1 visNetwork-1.0.2/visNetwork/R/visSelectEdges.R | 8 visNetwork-1.0.2/visNetwork/R/visSelectNodes.R | 8 visNetwork-1.0.2/visNetwork/R/visSetData.R | 2 visNetwork-1.0.2/visNetwork/R/visSetOptions.R | 1 visNetwork-1.0.2/visNetwork/R/visSetSelection.R | 14 visNetwork-1.0.2/visNetwork/R/visStabilize.R | 2 visNetwork-1.0.2/visNetwork/R/visUnselectAll.R | 2 visNetwork-1.0.2/visNetwork/R/visUpdateEdges.R | 2 visNetwork-1.0.2/visNetwork/R/visUpdateNodes.R | 9 visNetwork-1.0.2/visNetwork/README.md | 16 visNetwork-1.0.2/visNetwork/inst/doc/Introduction-to-visNetwork.html | 92 +-- visNetwork-1.0.2/visNetwork/inst/htmlwidgets/lib/export/html2canvas/html2canvas.js | 16 visNetwork-1.0.2/visNetwork/inst/htmlwidgets/lib/vis/vis.min.js |only visNetwork-1.0.2/visNetwork/inst/htmlwidgets/visNetwork.js | 281 +++++++--- visNetwork-1.0.2/visNetwork/inst/htmlwidgets/visNetwork.yaml | 2 visNetwork-1.0.2/visNetwork/inst/shiny/server.R | 1 visNetwork-1.0.2/visNetwork/inst/shiny/src/server/options_server.R | 13 visNetwork-1.0.2/visNetwork/inst/shiny/src/server/proxy_anim_server.R | 2 visNetwork-1.0.2/visNetwork/inst/shiny/src/server/proxy_get_server.R |only visNetwork-1.0.2/visNetwork/inst/shiny/src/server/proxy_options_server.R | 3 visNetwork-1.0.2/visNetwork/inst/shiny/src/server/proxy_select_server.R | 3 visNetwork-1.0.2/visNetwork/inst/shiny/src/ui/options_ui.R | 2 visNetwork-1.0.2/visNetwork/inst/shiny/src/ui/proxy_get_ui.R |only visNetwork-1.0.2/visNetwork/inst/shiny/ui.R | 3 visNetwork-1.0.2/visNetwork/man/visConfigure.Rd | 3 visNetwork-1.0.2/visNetwork/man/visDocumentation.Rd | 3 visNetwork-1.0.2/visNetwork/man/visEdges.Rd | 23 visNetwork-1.0.2/visNetwork/man/visEvents.Rd | 13 visNetwork-1.0.2/visNetwork/man/visExport.Rd | 3 visNetwork-1.0.2/visNetwork/man/visFit.Rd | 3 visNetwork-1.0.2/visNetwork/man/visFocus.Rd | 3 visNetwork-1.0.2/visNetwork/man/visGetEdges.Rd |only visNetwork-1.0.2/visNetwork/man/visGetNodes.Rd |only visNetwork-1.0.2/visNetwork/man/visGetPositions.Rd | 3 visNetwork-1.0.2/visNetwork/man/visGroups.Rd | 3 visNetwork-1.0.2/visNetwork/man/visHierarchicalLayout.Rd | 3 visNetwork-1.0.2/visNetwork/man/visIgraphLayout.Rd | 3 visNetwork-1.0.2/visNetwork/man/visInteraction.Rd | 3 visNetwork-1.0.2/visNetwork/man/visLayout.Rd | 3 visNetwork-1.0.2/visNetwork/man/visLegend.Rd | 3 visNetwork-1.0.2/visNetwork/man/visMoveNode.Rd | 3 visNetwork-1.0.2/visNetwork/man/visNetwork-igraph.Rd | 3 visNetwork-1.0.2/visNetwork/man/visNetwork-shiny.Rd | 5 visNetwork-1.0.2/visNetwork/man/visNetwork.Rd | 22 visNetwork-1.0.2/visNetwork/man/visNodes.Rd | 3 visNetwork-1.0.2/visNetwork/man/visOptions.Rd | 16 visNetwork-1.0.2/visNetwork/man/visPhysics.Rd | 3 visNetwork-1.0.2/visNetwork/man/visRedraw.Rd | 3 visNetwork-1.0.2/visNetwork/man/visRemoveEdges.Rd | 5 visNetwork-1.0.2/visNetwork/man/visRemoveNodes.Rd | 7 visNetwork-1.0.2/visNetwork/man/visSave.Rd | 3 visNetwork-1.0.2/visNetwork/man/visSelectEdges.Rd | 3 visNetwork-1.0.2/visNetwork/man/visSelectNodes.Rd | 3 visNetwork-1.0.2/visNetwork/man/visSetData.Rd | 3 visNetwork-1.0.2/visNetwork/man/visSetOptions.Rd | 3 visNetwork-1.0.2/visNetwork/man/visSetSelection.Rd | 3 visNetwork-1.0.2/visNetwork/man/visStabilize.Rd | 3 visNetwork-1.0.2/visNetwork/man/visUnselectAll.Rd | 3 visNetwork-1.0.2/visNetwork/man/visUpdateEdges.Rd | 3 visNetwork-1.0.2/visNetwork/man/visUpdateNodes.Rd | 7 92 files changed, 798 insertions(+), 297 deletions(-)
Title: Plot Categorical Data Using Quasirandom Noise and Density
Estimates
Description: Generate a violin point plot, a combination of a violin/histogram
plot and a scatter plot by offsetting points within a category based on their
density using quasirandom noise.
Author: Scott Sherrill-Mix, Erik Clarke
Maintainer: Scott Sherrill-Mix <shescott@upenn.edu>
Diff between vipor versions 0.4.3 dated 2016-07-27 and 0.4.4 dated 2016-10-05
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/violinPoint.R | 8 ++++---- inst/doc/methodComparison.R | 20 ++++++++++++++------ inst/doc/methodComparison.Rnw | 10 +++++++--- inst/doc/methodComparison.pdf |binary inst/doc/usageExamples.pdf |binary man/digits2number.Rd | 2 +- man/number2digits.Rd | 2 +- tests/testthat/tests.R | 16 +++++++++++++++- vignettes/methodComparison.Rnw | 10 +++++++--- 11 files changed, 63 insertions(+), 33 deletions(-)
Title: Fitting Step-Functions
Description: Allows to fit step-functions to univariate serial data where neither the number of jumps nor their positions is known.
Author: Timo Aspelmeier [cre, aut],
Thomas Hotz [aut],
Hannes Sieling [aut],
Pein Florian [ctb]
Maintainer: Timo Aspelmeier <timo.aspelmeier@mathematik.uni-goettingen.de>
Diff between stepR versions 1.0-4 dated 2016-03-24 and 1.0-5 dated 2016-10-05
ChangeLog | 65 ++++++++++++++++++++++++++++++++------------------- DESCRIPTION | 8 +++--- MD5 | 24 +++++++++--------- inst/CITATION | 2 - src/BinTree.h | 14 +++++++--- src/Bounds.cpp | 11 +++++++- src/Jump.cpp | 2 - src/Jump.h | 6 ++++ src/Step.cpp | 2 - src/Step.h | 19 ++++++++++---- src/StepBinom.cpp | 6 ++-- src/StepGaussVar.cpp | 8 +++--- src/StepPoisson.cpp | 6 ++-- 13 files changed, 108 insertions(+), 65 deletions(-)
Title: Structural Equation Modeling Using the Reticular Action Model
(RAM) Notation
Description: We rewrite of RAMpath software developed by John McArdle and Steven Boker as an R package. In addition to performing regular SEM analysis through the R package lavaan, RAMpath has unique features. First, it can generate path diagrams according to a given model. Second, it can display path tracing rules through path diagrams and decompose total effects into their respective direct and indirect effects as well as decompose variance and covariance into individual bridges. Furthermore, RAMpath can fit dynamic system models automatically based on latent change scores and generate vector field plots based upon results obtained from a bivariate dynamic system. Starting version 0.4, RAMpath can conduct power analysis for both univariate and bivariate latent change score models.
Author: Zhiyong Zhang, Jack McArdle, Aki Hamagami, & Kevin Grimm
Maintainer: Zhiyong Zhang <zzhang4@nd.edu>
Diff between RAMpath versions 0.3.8 dated 2014-01-21 and 0.4 dated 2016-10-05
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++++-- NAMESPACE | 8 ++++++-- R/power.R |only man/plot.lcs.power.Rd |only man/powerBLCS.Rd |only man/powerLCS.Rd |only 7 files changed, 19 insertions(+), 11 deletions(-)
Title: Multidimensional Item Response Theory
Description: Analysis of dichotomous and polytomous response data using
unidimensional and multidimensional latent trait models under the Item
Response Theory paradigm. Exploratory and confirmatory models can be
estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier analyses are available for modeling item testlets.
Multiple group analysis and mixed effects designs also are available for
detecting differential item and test functioning as well as modelling
item and person covariates. Finally, latent class models such as the DINA,
DINO, multidimensional latent class, and several other discrete variable
models are supported.
Author: Phil Chalmers [aut, cre, cph],
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb],
KwonHyun Kim [ctb],
Carl F. Falk [ctb],
Adam Meade [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirt versions 1.19 dated 2016-08-18 and 1.20.1 dated 2016-10-05
DESCRIPTION | 7 - MD5 | 66 ++++++++-------- NAMESPACE | 1 NEWS.md | 30 +++++++ R/03-estimation.R | 5 - R/EMstep.group.R | 24 +++--- R/EMstep.utils.R | 26 ++---- R/LoadPars.R | 7 + R/PLCI.mirt.R | 72 +++++++++++++----- R/PrepData.R | 5 + R/itemfit.R | 141 ++++++++++++++++++++---------------- R/itemplot.internal.R | 24 +++++- R/mdirt.R | 6 + R/mirt-package.R | 8 +- R/mirt.R | 13 +-- R/mirtCluster.R | 1 R/mixedmirt.R | 12 ++- R/personfit.R | 6 + R/poly2dich.R |only R/shinyItemplot.R | 26 +++--- R/utils.R | 9 ++ README.md | 4 - build/vignette.rds |binary man/LSAT6.Rd | 8 +- man/PLCI.mirt.Rd | 9 ++ man/itemfit.Rd | 88 ++++++++++++---------- man/mdirt.Rd | 8 +- man/mirt.Rd | 13 +-- man/mixedmirt.Rd | 1 man/poly2dich.Rd |only tests/tests/test-01-mirtOne.R | 8 +- tests/tests/test-02-mirtTwo.R | 2 tests/tests/test-04-multipleGroup.R | 14 +-- tests/tests/test-09-mirt.model.R | 2 tests/tests/test-11-discrete.R | 20 ++--- 35 files changed, 415 insertions(+), 251 deletions(-)
Title: Code Analysis Tools for R
Description: Code analysis tools for R.
Author: Luke Tierney <luke-tierney@uiowa.edu>
Maintainer: Luke Tierney <luke-tierney@uiowa.edu>
Diff between codetools versions 0.2-14 dated 2015-07-15 and 0.2-15 dated 2016-10-05
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/codetools.R | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Statistical Analysis of Point Processes
Description: Functions for statistical analysis of point processes.
Author: The Institute of Statistical Mathematics
Maintainer: Masami Saga <msaga@mtb.biglobe.ne.jp>
Diff between SAPP versions 1.0.4 dated 2014-07-31 and 1.0.7 dated 2016-10-05
SAPP-1.0.4/SAPP/inst/doc/SAPP-manual.pdf |only SAPP-1.0.4/SAPP/inst/doc/index.html |only SAPP-1.0.7/SAPP/DESCRIPTION | 11 SAPP-1.0.7/SAPP/MD5 | 88 ++--- SAPP-1.0.7/SAPP/NAMESPACE | 3 SAPP-1.0.7/SAPP/R/SAPP.R | 15 SAPP-1.0.7/SAPP/data/Brastings.rda |binary SAPP-1.0.7/SAPP/data/PProcess.rda |binary SAPP-1.0.7/SAPP/data/PoissonData.rda |binary SAPP-1.0.7/SAPP/data/SelfExcit.rda |binary SAPP-1.0.7/SAPP/data/main2003JUL26.rda |binary SAPP-1.0.7/SAPP/data/res2003JUL26.rda |binary SAPP-1.0.7/SAPP/inst/doc/changes.txt | 29 + SAPP-1.0.7/SAPP/man/Brastings.Rd | 8 SAPP-1.0.7/SAPP/man/PProcess.Rd | 4 SAPP-1.0.7/SAPP/man/PoissonData.Rd | 4 SAPP-1.0.7/SAPP/man/SAPP-package.Rd | 4 SAPP-1.0.7/SAPP/man/SelfExcit.Rd | 6 SAPP-1.0.7/SAPP/man/eptren.Rd | 36 +- SAPP-1.0.7/SAPP/man/etarpp.Rd | 24 - SAPP-1.0.7/SAPP/man/etasap.Rd | 16 SAPP-1.0.7/SAPP/man/etasim.Rd | 16 SAPP-1.0.7/SAPP/man/linlin.Rd | 18 - SAPP-1.0.7/SAPP/man/linsim.Rd | 18 - SAPP-1.0.7/SAPP/man/main2003JUL26.Rd | 4 SAPP-1.0.7/SAPP/man/momori.Rd | 14 SAPP-1.0.7/SAPP/man/pgraph.Rd | 34 +- SAPP-1.0.7/SAPP/man/ptspec.Rd | 16 SAPP-1.0.7/SAPP/man/res2003JUL26.Rd | 4 SAPP-1.0.7/SAPP/man/respoi.Rd | 20 - SAPP-1.0.7/SAPP/man/simbvh.Rd | 24 - SAPP-1.0.7/SAPP/src/aftpoi.f | 520 ++++++++++++++++++++----------- SAPP-1.0.7/SAPP/src/comsub.f | 40 +- SAPP-1.0.7/SAPP/src/eptrenf.f | 387 +++++++++++++++-------- SAPP-1.0.7/SAPP/src/etas.f | 426 ++++++++++++++++--------- SAPP-1.0.7/SAPP/src/etasimf.f | 43 +- SAPP-1.0.7/SAPP/src/linlinf.f | 382 ++++++++++++++-------- SAPP-1.0.7/SAPP/src/linsimf.f | 67 ++- SAPP-1.0.7/SAPP/src/momori.c | 69 ++-- SAPP-1.0.7/SAPP/src/pgraphf.f | 298 ++++++++++------- SAPP-1.0.7/SAPP/src/ptspecf.f | 34 +- SAPP-1.0.7/SAPP/src/raftpoi.f | 91 +++-- SAPP-1.0.7/SAPP/src/retas.f | 86 +++-- SAPP-1.0.7/SAPP/src/sapp.h | 2 SAPP-1.0.7/SAPP/src/sapp_f.h | 2 SAPP-1.0.7/SAPP/src/simbvhf.f | 81 +++- 46 files changed, 1865 insertions(+), 1079 deletions(-)
Title: Finite Mixture Modeling, Clustering & Classification
Description: R functions for random univariate and multivariate finite mixture model generation, estimation, clustering and classification. Variables can be continuous, discrete, independent or dependent and may follow normal, lognormal, Weibull, gamma, binomial, Poisson or Dirac parametric families.
Author: Marko Nagode [aut, cre]
Maintainer: Marko Nagode <marko.nagode@fs.uni-lj.si>
Diff between rebmix versions 2.8.2 dated 2016-06-20 and 2.8.3 dated 2016-10-05
DESCRIPTION | 6 MD5 | 52 +- R/RCLRMIX.R | 2 R/RCLSMIX.R | 4 R/REBMIX.R | 2 R/RNGMIX.R | 2 R/is.error.R | 6 R/legendA.R | 6 R/plot.RCLRMIX.R | 124 +++--- R/plot.RCLSMIX.R | 87 ++-- R/plot.RNGMIX.R | 40 +- inst/NEWS.Rd | 9 inst/doc/rebmix.R | 4 inst/doc/rebmix.Rnw | 8 inst/doc/rebmix.pdf |binary src/Rrebmix.cpp | 14 src/Rrebmvnorm.cpp | 14 src/base.cpp | 23 - src/base.h | 4 src/rebmix.cpp | 1 src/rebmixf.cpp | 953 +++++++++++++++++++++++++++++++++++++-------------- src/rebmixf.h | 13 src/rebmvnormf.cpp | 537 ++++++++++++++++------------ src/rebmvnormf.h | 3 src/rngmixf.cpp | 3 src/rngmixf.h | 1 vignettes/rebmix.Rnw | 8 27 files changed, 1258 insertions(+), 668 deletions(-)
Title: Tools and Plots for Multi-Well Plates
Description: Collection of functions for working with multi-well microtitre
plates, mainly 96, 384 and 1536 well plates.
Author: Scott Warchal [aut, cre]
Maintainer: Scott Warchal <s.warchal@sms.ed.ac.uk>
Diff between platetools versions 0.0.1 dated 2016-06-13 and 0.0.2 dated 2016-10-05
platetools-0.0.1/platetools/R/b_score.R |only platetools-0.0.2/platetools/DESCRIPTION | 11 - platetools-0.0.2/platetools/MD5 | 57 +++++----- platetools-0.0.2/platetools/NAMESPACE | 2 platetools-0.0.2/platetools/R/b_grid.R | 3 platetools-0.0.2/platetools/R/b_map.R | 17 -- platetools-0.0.2/platetools/R/bhit_map.R | 39 ++---- platetools-0.0.2/platetools/R/check_plate_input.R |only platetools-0.0.2/platetools/R/hit_grid.R | 4 platetools-0.0.2/platetools/R/hit_map.R | 7 - platetools-0.0.2/platetools/R/med_smooth.R | 29 +++++ platetools-0.0.2/platetools/R/missing_wells.R | 26 ++-- platetools-0.0.2/platetools/R/pc_grid.R | 2 platetools-0.0.2/platetools/R/pc_map.R | 2 platetools-0.0.2/platetools/R/pchit_grid.R | 2 platetools-0.0.2/platetools/R/pchit_map.R | 2 platetools-0.0.2/platetools/R/plate_map.R | 3 platetools-0.0.2/platetools/R/raw_grid.R | 35 ++---- platetools-0.0.2/platetools/R/raw_map.R | 10 - platetools-0.0.2/platetools/R/z_grid.R | 4 platetools-0.0.2/platetools/R/z_map.R | 8 - platetools-0.0.2/platetools/man/b_score.Rd | 2 platetools-0.0.2/platetools/man/check_plate_input.Rd |only platetools-0.0.2/platetools/man/pc_map.Rd | 2 platetools-0.0.2/platetools/man/raw_grid.Rd | 2 platetools-0.0.2/platetools/tests/testthat/test-basic_plots.R |only platetools-0.0.2/platetools/tests/testthat/test-grid_plots.R |only platetools-0.0.2/platetools/tests/testthat/test-med_smooth.R | 40 ++----- platetools-0.0.2/platetools/tests/testthat/test-missing_wells.R | 12 +- platetools-0.0.2/platetools/tests/testthat/test-plate_effects.R | 24 +++- platetools-0.0.2/platetools/tests/testthat/test-plate_map.R | 32 ++++- platetools-0.0.2/platetools/tests/testthat/test-plot_wrapper.R | 16 ++ 32 files changed, 202 insertions(+), 191 deletions(-)
Title: Hierarchical Nominal Clustering Package
Description: Package for hierarchical clustering of objects characterized by
nominal variables.
Author: Zdenek Sulc [aut, cre],
Hana Rezankova [aut]
Maintainer: Zdenek Sulc <zdenek.sulc@vse.cz>
Diff between nomclust versions 0.91.1010 dated 2015-06-03 and 1.00.1011 dated 2016-10-05
DESCRIPTION | 22 +++++++++++------- MD5 | 66 +++++++++++++++++++++++++++++------------------------- NAMESPACE | 11 ++++++--- R/WCE.R | 1 R/WCM.R | 3 +- R/eskin.R | 9 ++++--- R/good1.R | 11 +++++---- R/good2.R | 9 ++++--- R/good3.R | 9 ++++--- R/good4.R | 9 ++++--- R/iof.R | 9 ++++--- R/lin.R | 10 +++++--- R/lin1.R | 9 ++++--- R/morlini.R | 16 ++++++++----- R/nomclust.R | 7 ++++- R/nomprox.R |only R/of.R | 9 ++++--- R/sm.R | 9 ++++--- R/ve.R |only R/vm.R |only data/data20.RData |binary man/eskin.Rd | 10 ++++---- man/evalclust.Rd | 3 +- man/good1.Rd | 11 +++++---- man/good2.Rd | 13 ++++++---- man/good3.Rd | 11 +++++---- man/good4.Rd | 11 +++++---- man/iof.Rd | 13 ++++++---- man/lin.Rd | 11 +++++---- man/lin1.Rd | 11 +++++---- man/morlini.Rd | 9 ++++--- man/nomclust.Rd | 5 ++-- man/nomprox.Rd |only man/of.Rd | 9 ++++--- man/sm.Rd | 11 +++++---- man/ve.Rd |only man/vm.Rd |only 37 files changed, 219 insertions(+), 128 deletions(-)
Title: Calculate the NLTT Statistic
Description: Provides functions to calculate the normalised Lineage-Through-
Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures
the difference between two Lineage-Through-Time curves, where each curve is
normalised both in time and in number of lineages.
Author: Thijs Janzen [aut, cre],
Richel Bilderbeek [aut]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between nLTT versions 1.2.1 dated 2016-06-06 and 1.3 dated 2016-10-05
nLTT-1.2.1/nLTT/man/mcmc_nltt.Rd |only nLTT-1.3/nLTT/DESCRIPTION | 30 nLTT-1.3/nLTT/MD5 | 74 +- nLTT-1.3/nLTT/NAMESPACE | 24 nLTT-1.3/nLTT/R/ABC_SMC.R | 694 +++++++++++--------- nLTT-1.3/nLTT/R/get_average_nltt_matrix.R |only nLTT-1.3/nLTT/R/get_nltt_values.R |only nLTT-1.3/nLTT/R/get_phylogeny_nltt_matrix.R |only nLTT-1.3/nLTT/R/nLTTDiff.R | 239 ++++-- nLTT-1.3/nLTT/R/nltts_plot.R |only nLTT-1.3/nLTT/R/plot_nLTT.R | 121 ++- nLTT-1.3/nLTT/R/stretch_nltt_matrix.R |only nLTT-1.3/nLTT/build |only nLTT-1.3/nLTT/inst |only nLTT-1.3/nLTT/man/MCMC_nLTT.Rd |only nLTT-1.3/nLTT/man/abc_smc_nltt.Rd | 173 ++-- nLTT-1.3/nLTT/man/exampleTrees.Rd | 2 nLTT-1.3/nLTT/man/get_average_nltt_matrix.Rd |only nLTT-1.3/nLTT/man/get_average_nltt_matrix_impl_1.Rd |only nLTT-1.3/nLTT/man/get_average_nltt_matrix_impl_2.Rd |only nLTT-1.3/nLTT/man/get_nltt_values.Rd |only nLTT-1.3/nLTT/man/get_phylogeny_nltt_matrix.Rd |only nLTT-1.3/nLTT/man/nLTT-internal.Rd | 4 nLTT-1.3/nLTT/man/nLTT-package.Rd | 3 nLTT-1.3/nLTT/man/nLTTstat.Rd | 75 -- nLTT-1.3/nLTT/man/nLTTstat_exact.Rd | 52 - nLTT-1.3/nLTT/man/nltt_diff.Rd |only nLTT-1.3/nLTT/man/nltt_diff_exact.Rd |only nLTT-1.3/nLTT/man/nltt_lines.Rd | 56 - nLTT-1.3/nLTT/man/nltt_plot.Rd | 68 - nLTT-1.3/nLTT/man/nltts_plot.Rd |only nLTT-1.3/nLTT/man/stretch_nltt_matrix.Rd |only nLTT-1.3/nLTT/tests |only nLTT-1.3/nLTT/vignettes |only 34 files changed, 913 insertions(+), 702 deletions(-)
Title: Estimates Pseudotimes for Single Cell Expression Data
Description: Implements the DeLorean model to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.
Author: John Reid <john.reid@mrc-bsu.cam.ac.uk>
Maintainer: John Reid <john.reid@mrc-bsu.cam.ac.uk>
Diff between DeLorean versions 1.2.3 dated 2016-06-29 and 1.2.4 dated 2016-10-05
DESCRIPTION | 8 ++-- MD5 | 35 +++++++++++---------- NAMESPACE | 1 NEWS.md | 5 +++ R/model.r | 37 ++++++++++++++-------- R/package.r | 1 R/plot.r | 49 +++++++++++++++++++++++++++++- inst/Stan/exact-sizes.stan | 2 - inst/Stan/exact.stan | 2 - inst/Stan/lowrank-sizes.stan | 2 - inst/Stan/lowrank.stan | 2 - inst/doc/DeLorean.R | 2 - inst/doc/DeLorean.Rmd | 6 +-- inst/doc/DeLorean.html | 42 +++++++++++-------------- man/calc.inducing.pseudotimes.Rd | 6 +++ man/init.orderings.vs.pseudotimes.plot.Rd |only man/plot.de.lorean.Rd | 2 + man/prepare.for.stan.Rd | 6 +++ vignettes/DeLorean.Rmd | 2 - 19 files changed, 141 insertions(+), 69 deletions(-)
Title: Comparative 'Phylogenetic' Analyses of Diversification
Description: Contains a number of comparative 'phylogenetic' methods,
mostly focusing on analysing diversification and character
evolution. Contains implementations of 'BiSSE' (Binary State
'Speciation' and Extinction) and its unresolved tree extensions,
'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE',
'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
models of discrete and continuous trait evolution and constant rate
'speciation' and extinction.
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with 'GeoSSE' and
'ClaSSE' by Emma E. Goldberg <eeg@uic.edu>, and 'BiSSE-ness' by Karen
Magnuson-Ford.
Maintainer: Richard G. FitzJohn <rich.fitzjohn@gmail.com>
Diff between diversitree versions 0.9-8 dated 2015-12-21 and 0.9-9 dated 2016-10-05
DESCRIPTION | 17 - MD5 | 50 ++--- R/t.R | 4 build/partial.rdb |binary inst/tests/helper-diversitree.R | 12 - inst/tests/test-asr-t.R | 354 ++++++++++++++++++++-------------------- inst/tests/test-asr.R | 165 +++++++++--------- inst/tests/test-bd.R | 1 inst/tests/test-mcmc.R | 9 - inst/tests/test-mle.R | 4 inst/tests/test-pgls.R | 29 ++- man/asr-bisse.Rd | 4 man/diversitree-package.Rd | 2 man/make.bd.t.Rd | 2 man/make.bisse.Rd | 4 man/make.bm.Rd | 2 man/make.mkn.Rd | 2 man/make.musse.Rd | 4 src/continuous.c | 4 src/dnchbv.f | 6 src/expm.f | 21 +- src/hyperg.f | 2 src/quasse-eqs-fftC.c | 2 src/rfftw.c | 2 src/util.c | 11 + src/util.h | 3 26 files changed, 363 insertions(+), 353 deletions(-)
Title: Stochastic Process Model for Analysis of Longitudinal and
Time-to-Event Outcomes
Description: Utilities to estimate parameters of the models with survival functions
induced by stochastic covariates. Miscellaneous functions for data preparation
and simulation are also provided. For more information, see: (i) "Life tables
with covariates: Dynamic model for nonlinear analysis of longitudinal data"
by Akushevich, I. et al. (2005), Mathematical Population Studies 12(2), 51(80),
<DOI:10.1080/08898480590932296>; (ii) "Stochastic model for analysis of
longitudinal data on aging and mortality" by Yashin A. et al. (2007),
Mathematical Biosciences, 208(2), 538-551, <DOI:10.1016/j.mbs.2006.11.006>;
(iii) "Health decline, aging and mortality: how are they related?"
by Yashin A. et al. (2007),
Biogerontology 8(3), 291(302), <DOI:10.1007/s10522-006-9073-3>.
Author: I. Y. Zhbannikov, I. V. Akushevich, K. G. Arbeev, A. I. Yashin.
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between stpm versions 1.3.4 dated 2016-09-04 and 1.3.8 dated 2016-10-05
DESCRIPTION | 8 MD5 | 36 +- R/prepare_data.R | 80 ++++- R/spm.R | 12 R/spm_continuous.R | 27 +- R/spm_discrete.R | 19 - R/spm_projection.R | 38 ++ R/spm_time-dependent.R | 54 ++-- README.md | 10 inst/doc/stpm-vignette.R | 99 +++++++ inst/doc/stpm-vignette.Rmd | 141 +++++++++- inst/doc/stpm-vignette.html | 589 +++++++++++++++++++++++++++++++++----------- man/prepare_data.Rd | 5 man/prepare_data_cont.Rd | 4 man/prepare_data_discr.Rd | 6 man/spm.Rd | 5 man/spm_continuous.Rd | 20 + man/spm_time_dep.Rd | 20 + vignettes/stpm-vignette.Rmd | 141 +++++++++- 19 files changed, 1041 insertions(+), 273 deletions(-)
Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive pre-built widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
JJ Allaire [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/shared/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/shared/jqueryui/AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Stefan Petre [ctb, cph] (Bootstrap-datepicker library),
Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),
Dave Gandy [ctb, cph] (Font-Awesome font),
Brian Reavis [ctb, cph] (selectize.js library),
Kristopher Michael Kowal [ctb, cph] (es5-shim library),
es5-shim contributors [ctb, cph] (es5-shim library),
Denis Ineshin [ctb, cph] (ion.rangeSlider library),
Sami Samhuri [ctb, cph] (Javascript strftime library),
SpryMedia Limited [ctb, cph] (DataTables library),
John Fraser [ctb, cph] (showdown.js library),
John Gruber [ctb, cph] (showdown.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shiny versions 0.14 dated 2016-09-09 and 0.14.1 dated 2016-10-05
shiny-0.14.1/shiny/DESCRIPTION | 10 shiny-0.14.1/shiny/MD5 | 192 shiny-0.14.1/shiny/NEWS.md | 61 shiny-0.14.1/shiny/R/fileupload.R | 2 shiny-0.14.1/shiny/R/input-date.R | 62 shiny-0.14.1/shiny/R/input-select.R | 2 shiny-0.14.1/shiny/R/input-slider.R | 7 shiny-0.14.1/shiny/R/input-utils.R | 13 shiny-0.14.1/shiny/R/jqueryui.R | 2 shiny-0.14.1/shiny/R/render-plot.R | 65 shiny-0.14.1/shiny/R/server-input-handlers.R | 21 shiny-0.14.1/shiny/R/showcase.R | 2 shiny-0.14.1/shiny/R/update-input.R | 32 shiny-0.14.1/shiny/inst/www/shared/datepicker/css/bootstrap-datepicker3.css |only shiny-0.14.1/shiny/inst/www/shared/datepicker/css/bootstrap-datepicker3.min.css |only shiny-0.14.1/shiny/inst/www/shared/datepicker/js/bootstrap-datepicker.js | 2141 shiny-0.14.1/shiny/inst/www/shared/datepicker/js/bootstrap-datepicker.min.js | 5 shiny-0.14.1/shiny/inst/www/shared/datepicker/js/locales/bootstrap-datepicker.ar.min.js |only 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shiny-0.14.1/shiny/inst/www/shared/shiny.min.js | 6 shiny-0.14.1/shiny/inst/www/shared/shiny.min.js.map | 2 shiny-0.14.1/shiny/man/dateInput.Rd | 21 shiny-0.14.1/shiny/man/dateRangeInput.Rd | 15 shiny-0.14.1/shiny/man/updateDateInput.Rd | 15 shiny-0.14.1/shiny/man/updateDateRangeInput.Rd | 14 shiny-0.14.1/shiny/tests/testthat/test-bootstrap.r | 19 shiny-0.14.1/shiny/tests/testthat/test-plot-coordmap.R | 118 shiny-0.14/shiny/inst/www/shared/datepicker/css/datepicker.css |only shiny-0.14/shiny/inst/www/shared/datepicker/js/locales/bootstrap-datepicker.bg.js |only shiny-0.14/shiny/inst/www/shared/datepicker/js/locales/bootstrap-datepicker.ca.js |only shiny-0.14/shiny/inst/www/shared/datepicker/js/locales/bootstrap-datepicker.cs.js |only shiny-0.14/shiny/inst/www/shared/datepicker/js/locales/bootstrap-datepicker.da.js |only shiny-0.14/shiny/inst/www/shared/datepicker/js/locales/bootstrap-datepicker.de.js |only 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shiny-0.14/shiny/inst/www/shared/datepicker/less |only 152 files changed, 18584 insertions(+), 12665 deletions(-)
Title: Interface to the 'USGS' 'BISON' 'API'
Description: Interface to the 'USGS' 'BISON' 'API', a 'database' for
species occurrence data on the web. Data comes from species in the
United States from participating data providers. You can get
data via 'taxonomic' and location based queries. A simple function
is provided to help visualize data.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rbison versions 0.4.8 dated 2015-07-01 and 0.5.0 dated 2016-10-05
rbison-0.4.8/rbison/R/bison_solr.R |only rbison-0.5.0/rbison/DESCRIPTION | 13 - rbison-0.5.0/rbison/LICENSE | 2 rbison-0.5.0/rbison/MD5 | 59 ++-- rbison-0.5.0/rbison/NAMESPACE | 7 rbison-0.5.0/rbison/NEWS.md |only rbison-0.5.0/rbison/R/bison.R | 34 +- rbison-0.5.0/rbison/R/bison_providers.R | 23 - rbison-0.5.0/rbison/R/bison_solr.r |only rbison-0.5.0/rbison/R/bison_stats.R | 21 - rbison-0.5.0/rbison/R/bison_tax.R | 14 - rbison-0.5.0/rbison/R/bisonmap.R | 23 + rbison-0.5.0/rbison/R/citation_datause.R | 70 ++--- rbison-0.5.0/rbison/R/rbison-package.R | 28 +- rbison-0.5.0/rbison/R/zzz.R | 89 +++---- rbison-0.5.0/rbison/README.md | 226 +++++++++---------- rbison-0.5.0/rbison/build/vignette.rds |binary rbison-0.5.0/rbison/man/all_states.Rd | 2 rbison-0.5.0/rbison/man/bison.Rd | 8 rbison-0.5.0/rbison/man/bison_datause.Rd | 2 rbison-0.5.0/rbison/man/bison_providers.Rd | 2 rbison-0.5.0/rbison/man/bison_solr.Rd | 5 rbison-0.5.0/rbison/man/bison_stats.Rd | 2 rbison-0.5.0/rbison/man/bison_tax.Rd | 2 rbison-0.5.0/rbison/man/bisonmap.Rd | 2 rbison-0.5.0/rbison/man/fips.Rd | 2 rbison-0.5.0/rbison/man/is.bison.Rd | 2 rbison-0.5.0/rbison/man/is.bison_solr.Rd | 2 rbison-0.5.0/rbison/man/rbison-package.Rd | 20 - rbison-0.5.0/rbison/tests/testthat/Rplots.pdf |binary rbison-0.5.0/rbison/tests/testthat/test-bison_solr.R | 6 rbison-0.5.0/rbison/tests/testthat/test-bisonmap.R | 2 32 files changed, 343 insertions(+), 325 deletions(-)
Title: JavaScript Charts API Tool
Description: API for using 'AmCharts' Library. Based on 'htmlwidgets',
it provides a global architecture to generate 'JavaScript' source code
for charts. Most of classes in the library have their equivalent in R with S4
classes; for those classes, not all properties have been referenced but can
easily be added in the constructors. Complex properties (e.g. 'JavaScript'
object) can be passed as named list. See examples at <http:// datastorm-
open.github.io/introduction_ramcharts/>. and <http://www.amcharts.com/> for
more information about the library. The package includes the free version of
'AmCharts' Library. Its only limitation is a small link to the web site
displayed on your charts. If you enjoy this library, do not hesitate
to refer to this page <http://www.amcharts.com/online-store/> to purchase a
licence, and thus support its creators and get a period of Priority Support.
See also <http://www.amcharts.com/about/> for more information about 'AmCharts'
company.
Author: Jeffery Petit [aut, cre],
Antanas Marcelionis [aut, cph] ('AmCharts' library in th directory
htmlwidgets/lib/amcharts, refer to http://www.amcharts.com/),
Benoit Thieurmel [aut, ctb],
Elena Salette [aut, ctb],
Titouan Robert [aut, ctb]
Maintainer: Jeffery Petit <jeffery.petit@datastorm.fr>
Diff between rAmCharts versions 2.0.3 dated 2016-06-15 and 2.1.1 dated 2016-10-05
DESCRIPTION | 34 MD5 | 139 +- NAMESPACE | 7 R/base_data.R | 13 R/base_startupMessage.R | 5 R/chart_amBarplot.R | 192 +-- R/chart_amCandlestick.R | 5 R/chart_amDataset.R |only R/chart_amFloatingBar.R | 5 R/chart_amGauge.R | 15 R/chart_amRadar.R | 29 R/chart_amTimeSeries.R | 4 R/class_AmChart.R | 10 R/class_AmChart_constructors.R | 87 - R/class_AmChart_setters.R | 73 - R/class_AmLegend.R | 3 R/class_AmObject.R | 87 - R/class_AmStockChart_setters.R | 10 R/class_AxisBase_setters.R | 2 R/class_DataSet_setters.R | 18 R/class_GaugeAxis_setters.R | 2 R/class_PeriodSelector.R | 2 R/class_StockPanel.R | 5 R/class_StockPanel_setters.R | 8 R/class_Title.R | 25 R/union_AmCharts.R | 8 R/utils_amOptions.R | 53 data/data_gantt.rda |only inst/conf.yaml | 2 inst/htmlwidgets/lib/amcharts.js | 562 +++++----- inst/htmlwidgets/lib/amstock.js | 100 - inst/htmlwidgets/lib/funnel.js | 28 inst/htmlwidgets/lib/gauge.js | 48 inst/htmlwidgets/lib/lang/cs.js |only inst/htmlwidgets/lib/pie.js | 23 inst/htmlwidgets/lib/plugins/dataloader/dataloader.min.js | 2 inst/htmlwidgets/lib/plugins/dataloader/lang/cs.js |only inst/htmlwidgets/lib/plugins/export/export.min.js | 96 - inst/htmlwidgets/lib/plugins/export/lang/cs.js |only inst/htmlwidgets/lib/plugins/export/lang/de.js | 4 inst/htmlwidgets/lib/plugins/export/lang/en.js | 4 inst/htmlwidgets/lib/plugins/export/lang/fr.js | 4 inst/htmlwidgets/lib/plugins/export/lang/ko.js | 4 inst/htmlwidgets/lib/plugins/export/lang/lt.js | 4 inst/htmlwidgets/lib/plugins/export/lang/pl.js | 4 inst/htmlwidgets/lib/plugins/export/lang/pt.js | 4 inst/htmlwidgets/lib/plugins/export/libs/fabric.js/fabric.min.js | 23 inst/htmlwidgets/lib/serial.js | 144 +- inst/htmlwidgets/lib/xy.js | 38 inst/htmlwidgets/ramcharts_base.js | 212 ++- inst/htmlwidgets/ramcharts_base.yaml | 2 inst/shiny/src/bar/bar_server.R | 40 inst/shiny/src/gauge/gauge_server.R | 20 inst/shiny/src/lines/lines_server.R | 32 inst/shiny/src/pie/pie_server.R | 20 inst/shiny/src/radar/radar_server.R | 14 inst/shiny/src/xy/xy_server.R | 12 man/AmChart-class.Rd | 3 man/AmStockChart.Rd | 2 man/DataSet.Rd | 9 man/Title.Rd | 14 man/amBarplot.Rd | 33 man/amOptions.Rd | 7 man/amRadar.Rd | 7 man/amStockMultiSet.Rd |only man/amTimeSeries.Rd | 2 man/data_gantt.Rd |only man/initialize-AmChart.Rd | 34 man/initialize-AmLegend.Rd | 2 man/initialize-StockPanel.Rd | 12 man/listProperties-AmObject.Rd | 1 man/methods-AmObject.Rd | 16 man/show-AmObject-method.Rd | 10 tests/testthat/test_amchart_setters.R | 2 74 files changed, 1266 insertions(+), 1175 deletions(-)
Title: Classes with Reference Semantics
Description: The R6 package allows the creation of classes with reference
semantics, similar to R's built-in reference classes. Compared to reference
classes, R6 classes are simpler and lighter-weight, and they are not built
on S4 classes so they do not require the methods package. These classes
allow public and private members, and they support inheritance, even when
the classes are defined in different packages.
Author: Winston Chang [aut, cre]
Maintainer: Winston Chang <winston@stdout.org>
Diff between R6 versions 2.1.3 dated 2016-08-19 and 2.2.0 dated 2016-10-05
R6-2.1.3/R6/NEWS |only R6-2.2.0/R6/DESCRIPTION | 6 - R6-2.2.0/R6/MD5 | 42 ++++---- R6-2.2.0/R6/NAMESPACE | 2 R6-2.2.0/R6/NEWS.md |only R6-2.2.0/R6/R/clone.R | 4 R6-2.2.0/R6/R/is.R |only R6-2.2.0/R6/R/new.R | 14 ++ R6-2.2.0/R6/R/print.R | 10 - R6-2.2.0/R6/README.md | 10 - R6-2.2.0/R6/build/vignette.rds |binary R6-2.2.0/R6/inst/doc/Debugging.Rmd | 4 R6-2.2.0/R6/inst/doc/Introduction.R | 21 +--- R6-2.2.0/R6/inst/doc/Introduction.Rmd | 30 ++--- R6-2.2.0/R6/inst/doc/Introduction.html | 38 ++----- R6-2.2.0/R6/inst/doc/Performance.Rmd | 4 R6-2.2.0/R6/inst/doc/Performance.html | 137 +++++++++++++-------------- R6-2.2.0/R6/inst/doc/Portable.Rmd | 4 R6-2.2.0/R6/man/is.R6.Rd |only R6-2.2.0/R6/tests/testthat/test-finalizer.R |only R6-2.2.0/R6/tests/testthat/test-s3-methods.R |only R6-2.2.0/R6/vignettes/Debugging.Rmd | 4 R6-2.2.0/R6/vignettes/Introduction.Rmd | 30 ++--- R6-2.2.0/R6/vignettes/Performance.Rmd | 4 R6-2.2.0/R6/vignettes/Portable.Rmd | 4 25 files changed, 180 insertions(+), 188 deletions(-)
Title: Title: Learn Data Science Through the "Data Science Live Book"
Description: Around 10% of almost any predictive modeling project
is spent in predictive modeling, 'funModeling' and the book <http://
livebook.datascienceheroes.com/> are intended to cover remaining 90%: data
preparation, profiling, selecting best variables 'dataViz', assessing model
performance and other functions.
Author: Pablo Casas
Maintainer: Pablo Casas <pabloc@datascienceheroes.com>
Diff between funModeling versions 1.2 dated 2016-08-10 and 1.3 dated 2016-10-05
DESCRIPTION | 15 +- MD5 | 12 +- NAMESPACE | 3 R/cross_plot.R | 4 R/models_lib.R | 277 +++++++++++++++++++++++++++++++++---------------------- R/numbers.R | 82 ++++++++++++++++ man/freq.Rd |only man/gain_lift.Rd |only 8 files changed, 274 insertions(+), 119 deletions(-)
Title: Effect Displays for Linear, Generalized Linear, and Other Models
Description:
Graphical and tabular effect displays, e.g., of interactions, for
various statistical models with linear predictors.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Michael Friendly [aut],
Jangman Hong [aut],
Robert Andersen [ctb],
David Firth [ctb],
Steve Taylor [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between effects versions 3.1-1 dated 2016-03-29 and 3.1-2 dated 2016-10-05
DESCRIPTION | 12 MD5 | 36 - NEWS | 16 R/Effect.R | 16 R/effectsclmm.R | 18 R/effectsmer.R | 3 R/plot-methods.R | 86 ++- R/plot.effpoly.R | 71 +- data/Arrests.rda |binary data/BEPS.rda |binary data/Cowles.rda |binary data/Hartnagel.rda |binary data/Prestige.rda |binary data/TitanicSurvival.rda |binary data/WVS.rda |binary data/Wells.rda |binary man/effect.Rd | 1198 +++++++++++++++++++++++------------------------ man/effects-package.Rd | 4 man/summary.effect.Rd | 14 19 files changed, 784 insertions(+), 690 deletions(-)
Title: Distance Sampling Simulations
Description: Performs distance sampling simulations. It repeatedly generates
instances of a user defined population within a given survey region, generates
realisations of a survey design (currently these must be generated using
Distance software in advance <http://distancesampling.org/>) and simulates
the detection process. The data are then analysed so that the results can
be compared for accuracy and precision across all replications. This will
allow users to select survey designs which will give them the best accuracy
and precision given their expectations about population distribution. Any
uncertainty in population distribution or population parameters can be
included by running the different survey designs for a number of different
population descriptions. An example simulation can be found in the help file for
make.simulation.
Author: Laura Marshall <lhm@st-and.ac.uk>
Maintainer: Laura Marshall <lhm@st-and.ac.uk>
Diff between DSsim versions 1.0.6 dated 2016-08-10 and 1.0.7 dated 2016-10-05
DESCRIPTION | 37 ++++++++++++++++++------------------- MD5 | 14 ++++++++------ NEWS | 15 +++++++++++++++ R/Class.Constructors.R | 8 ++++++++ R/LT.SegmentedGrid.Design.R |only R/LT.SegmentedTrack.Design.R |only R/Simulation.R | 9 ++++++--- R/data.for.distance.R | 3 +-- man/data.for.distance.Rd | 3 +-- 9 files changed, 57 insertions(+), 32 deletions(-)
Title: Optimal and Fast Univariate k-Means Clustering
Description: A dynamic programming algorithm for optimal univariate k-means
clustering. Minimizing the sum of squares of within-cluster distances, the
algorithm guarantees optimality and reproducibility. Its advantage over
heuristic k-means algorithms in efficiency and accuracy is increasingly
pronounced as the number of clusters k increases. It provides an alternative
to heuristic k-means algorithms for univariate clustering.
Author: Joe Song [aut, cre], Haizhou Wang [aut]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between Ckmeans.1d.dp versions 3.4.6-2 dated 2016-09-25 and 3.4.6-3 dated 2016-10-05
DESCRIPTION | 20 ++++++++-------- MD5 | 16 +++++++----- NAMESPACE | 2 + NEWS | 21 ++++++++++++++++- R/Ckmeans.1d.dp.R | 24 +++---------------- R/visualize.R |only man/Ckmeans.1d.dp-package.Rd | 2 - man/Ckmeans.1d.dp.Rd | 15 +++++++----- man/ahist.Rd | 53 +++++++++++++++++++++++++++++++++---------- man/plot.Ckmeans.1d.dp.Rd |only 10 files changed, 96 insertions(+), 57 deletions(-)
More information about automultinomial at CRAN
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