Title: Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), Mahalanobis distance are some of the many fast functions.
Author: Manos Papadakis, Michail Tsagris, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis and John Burkardt
Maintainer: Manos Papadakis <papadakm95@gmail.com>
Diff between Rfast versions 1.4 dated 2016-10-08 and 1.5 dated 2016-10-10
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- man/colrange.Rd | 3 ++- man/mahala.Rd | 5 ++--- man/transpose.Rd | 2 +- man/ttests.Rd | 10 +++++----- 6 files changed, 20 insertions(+), 20 deletions(-)
Title: Robust PCA by Projection Pursuit
Description: Provides functions for robust PCA by projection pursuit.
Author: Peter Filzmoser, Heinrich Fritz, Klaudius Kalcher
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between pcaPP versions 1.9-60 dated 2014-10-21 and 1.9-61 dated 2016-10-10
ChangeLog | 22 +++++++++- DESCRIPTION | 10 ++-- MD5 | 18 ++++---- NAMESPACE | 8 +++ R/PCdiagplot.R | 40 +++++++++--------- build/vignette.rds |binary inst/doc/matlab.R | 110 ++++++++++++++++++++++++++-------------------------- inst/doc/matlab.pdf |binary src/R_meal.h | 6 ++ src/pcaPP.cpp | 4 + 10 files changed, 128 insertions(+), 90 deletions(-)
Title: Platform for EDGAR Filing Management
Description: In the USA, firms file different forms with the U.S. Securities and
Exchange Commission (SEC) through EDGAR (Electronic Data Gathering, Analysis,
and Retrieval system). EDGAR automated system collects all the different
necessary filings and make it publicly available. Secondly, it validates
collected filings, then perform indexing and accepting of these submitted
forms. Investors, regulators, and researchers often require these forms for
various purposes. This package helps in data gathering, management, and
visualization in this regard. It downloads SEC EDGAR quarterly master
indexes, daily master indexes, and filings from SEC.org site and perform
sentiment analysis of these filing.
Author: Gunratan Lonare <lonare.gunratan@gmail.com>, Bharat Patil
<bharatspatil@gmail.com>
Maintainer: Gunratan Lonare <lonare.gunratan@gmail.com>
Diff between edgar versions 1.0.5 dated 2016-08-17 and 1.0.6 dated 2016-10-10
DESCRIPTION | 16 ++++++++-------- MD5 | 14 +++++++------- R/getMasterIndex.R | 2 +- R/getWordfrquency.R | 2 +- R/mergeCompustat.R | 36 +++++++++++++++++++----------------- man/getMasterIndex.Rd | 2 +- man/getWordfrquency.Rd | 2 +- man/mergeCompustat.Rd | 30 ++++++++++++++++-------------- 8 files changed, 54 insertions(+), 50 deletions(-)
Title: Access WHO Global Health Observatory Data from R
Description: Access WHO Global Health Observatory
data from R via the Athena web service,
an application program interface providing
a simple query interface to the World
Health Organization's data and statistics content.
Author: Antoine Filipovic-Pierucci [aut,cre]
Maintainer: Antoine Filipovic-Pierucci <pierucci@gmail.com>
Diff between rgho versions 0.2.2 dated 2016-09-26 and 0.2.3 dated 2016-10-10
rgho-0.2.2/rgho/tests |only rgho-0.2.3/rgho/DESCRIPTION | 6 rgho-0.2.3/rgho/MD5 | 22 rgho-0.2.3/rgho/NEWS.md | 6 rgho-0.2.3/rgho/inst/doc/a-intro.html | 104 +- rgho-0.2.3/rgho/inst/doc/b-dimensions.html | 4 rgho-0.2.3/rgho/inst/doc/c-codes-gho.html | 1280 +++++++++++++------------- rgho-0.2.3/rgho/inst/doc/d-codes-country.html | 20 rgho-0.2.3/rgho/inst/doc/e-details.html | 4 9 files changed, 725 insertions(+), 721 deletions(-)
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider <schneider.393@osu.edu>
Diff between NSM3 versions 1.8 dated 2016-10-10 and 1.9 dated 2016-10-10
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/theil.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Description: Kernel regression smoothing with adaptive local or global plug-in
bandwidth selection.
Author: Eva Herrmann <eherrmann@mathematik.tu-darmstadt.de> (F77 & S original);
Packaged for R and enhanced by Martin Maechler
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between lokern versions 1.1-6 dated 2014-11-18 and 1.1-8 dated 2016-10-10
lokern-1.1-6/lokern/tests/glk1.Rout_Win64_Uwe |only lokern-1.1-8/lokern/ChangeLog | 13 + lokern-1.1-8/lokern/DESCRIPTION | 10 lokern-1.1-8/lokern/MD5 | 37 +-- lokern-1.1-8/lokern/NAMESPACE | 12 + lokern-1.1-8/lokern/R/glkerns.R | 74 ++++--- lokern-1.1-8/lokern/R/lokerns.R | 95 ++++++--- lokern-1.1-8/lokern/R/varNPreg.R | 4 lokern-1.1-8/lokern/demo/glk-derivs.R | 3 lokern-1.1-8/lokern/man/KernS-methods.Rd | 5 lokern-1.1-8/lokern/man/glkerns.Rd | 57 ++++- lokern-1.1-8/lokern/man/lokerns.Rd | 44 +++- lokern-1.1-8/lokern/man/xSim.Rd | 2 lokern-1.1-8/lokern/src/auxkerns.f | 236 +++++++++++++--------- lokern-1.1-8/lokern/src/glkerns.f | 78 ++++--- lokern-1.1-8/lokern/src/lokerns.f | 70 +++--- lokern-1.1-8/lokern/src/monitor.c | 40 +++ lokern-1.1-8/lokern/tests/glk1.R | 30 ++ lokern-1.1-8/lokern/tests/glk1.Rout.save | 272 +++++--------------------- lokern-1.1-8/lokern/tests/lok1.Rout.save | 106 +++++----- 20 files changed, 641 insertions(+), 547 deletions(-)
Title: Individual Tree Growth Modeling
Description: Individual tree model is an instrument to support the decision with
regard to forest management. This package provides functions that let you work
with data for this model. Also other support functions and extension related to
this model are available.
Author: Clayton Vieira Fraga Filho, Miqueias Fernandes
Maintainer: Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>
Diff between ITGM versions 0.3 dated 2016-09-26 and 0.4 dated 2016-10-10
ITGM-0.3/ITGM/R/primeirasMedicoes.R |only ITGM-0.3/ITGM/man/primeirasMedicoes.Rd |only ITGM-0.4/ITGM/DESCRIPTION | 6 +++--- ITGM-0.4/ITGM/MD5 | 14 +++++++++----- ITGM-0.4/ITGM/NAMESPACE | 4 +++- ITGM-0.4/ITGM/R/firstsMeasurements.R |only ITGM-0.4/ITGM/R/getModelsExclusiveOfLiterature.R |only ITGM-0.4/ITGM/R/getModelsGenericOfLiterature.R |only ITGM-0.4/ITGM/man/firstsMeasurements.Rd |only ITGM-0.4/ITGM/man/getModelsExclusiveOfLiterature.Rd |only ITGM-0.4/ITGM/man/getModelsGenericOfLiterature.Rd |only ITGM-0.4/ITGM/tests/testthat/testPrimeirasMedicoes.R | 4 ++-- 12 files changed, 17 insertions(+), 11 deletions(-)
Title: Collect and Retrieve Annotation Data for Various Genomic Data
Using Different Webservices
Description: Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.
Author: Daniel Fischer [aut, cre], Anu Sironen [aut]
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
Diff between hoardeR versions 0.9 dated 2016-09-01 and 0.9.1 dated 2016-10-10
hoardeR-0.9.1/hoardeR/DESCRIPTION | 13 hoardeR-0.9.1/hoardeR/MD5 | 80 +- hoardeR-0.9.1/hoardeR/NAMESPACE | 26 hoardeR-0.9.1/hoardeR/R/aaa.R | 35 hoardeR-0.9.1/hoardeR/R/blastSeq.R | 76 +- hoardeR-0.9.1/hoardeR/R/createSpecies.R |only hoardeR-0.9.1/hoardeR/R/exportBed.R | 8 hoardeR-0.9.1/hoardeR/R/exportFA.R | 7 hoardeR-0.9.1/hoardeR/R/findSpecies.R |only hoardeR-0.9.1/hoardeR/R/getAnnotation.R | 111 ++- hoardeR-0.9.1/hoardeR/R/getBlastResult.R | 2 hoardeR-0.9.1/hoardeR/R/getFastaFromBed.R | 66 + hoardeR-0.9.1/hoardeR/R/importBed.R |only hoardeR-0.9.1/hoardeR/R/importXML.R | 5 hoardeR-0.9.1/hoardeR/R/intersectXMLAnnot.R | 11 hoardeR-0.9.1/hoardeR/R/plotHit.R | 203 +++-- hoardeR-0.9.1/hoardeR/R/print.fa.R | 3 hoardeR-0.9.1/hoardeR/R/sendFA.R | 4 hoardeR-0.9.1/hoardeR/R/summary.fa.R | 2 hoardeR-0.9.1/hoardeR/R/tableSpecies.R | 36 - hoardeR-0.9.1/hoardeR/build/vignette.rds |binary hoardeR-0.9.1/hoardeR/data/species.rda |binary hoardeR-0.9.1/hoardeR/inst/ChangeLog | 23 hoardeR-0.9.1/hoardeR/inst/doc/hoardeR-vignette.R | 568 +++++++++++---- hoardeR-0.9.1/hoardeR/inst/doc/hoardeR-vignette.Rmd | 683 ++++++++++++------- hoardeR-0.9.1/hoardeR/inst/doc/hoardeR-vignette.pdf |only hoardeR-0.9.1/hoardeR/man/blastSeq.Rd | 7 hoardeR-0.9.1/hoardeR/man/exportBed.Rd | 4 hoardeR-0.9.1/hoardeR/man/exportFA.Rd | 4 hoardeR-0.9.1/hoardeR/man/findSpecies.Rd |only hoardeR-0.9.1/hoardeR/man/getAnnotation.Rd | 18 hoardeR-0.9.1/hoardeR/man/getFastaFromBed.Rd | 13 hoardeR-0.9.1/hoardeR/man/hoardeR-package.Rd | 6 hoardeR-0.9.1/hoardeR/man/importBed.Rd |only hoardeR-0.9.1/hoardeR/man/plotHit.Rd | 23 hoardeR-0.9.1/hoardeR/man/species.Rd | 10 hoardeR-0.9.1/hoardeR/man/tableSpecies.Rd | 3 hoardeR-0.9.1/hoardeR/vignettes/coverageExample.jpg |only hoardeR-0.9.1/hoardeR/vignettes/hoardeR-vignette.Rmd | 683 ++++++++++++------- hoardeR-0.9.1/hoardeR/vignettes/pigFlanking.jpg |only hoardeR-0.9/hoardeR/R/importPedMap.R |only hoardeR-0.9/hoardeR/R/print.pedMap.R |only hoardeR-0.9/hoardeR/R/summary.pedMap.R |only hoardeR-0.9/hoardeR/R/updateSpecies.R |only hoardeR-0.9/hoardeR/inst/doc/hoardeR-vignette.html |only hoardeR-0.9/hoardeR/man/importPedMap.Rd |only hoardeR-0.9/hoardeR/man/print.pedMap.Rd |only hoardeR-0.9/hoardeR/man/summary.pedMap.Rd |only hoardeR-0.9/hoardeR/vignettes/coverageExample.png |only hoardeR-0.9/hoardeR/vignettes/pigFlanking.png |only 50 files changed, 1870 insertions(+), 863 deletions(-)
Title: A Future API for R
Description: A Future API for R is provided. In programming, a future is an
abstraction for a value that may be available at some point in the future.
The state of a future can either be unresolved or resolved. As soon as it
is resolved, the value is available. Futures are useful constructs in for
instance concurrent evaluation, e.g. parallel processing and distributed
processing on compute clusters. The purpose of this package is to provide
a lightweight interface for using futures in R. Functions 'future()' and
'value()' exist for creating futures and requesting their values, e.g.
'f <- future({ mandelbrot(-0.75, 0, side=3) })' and 'v <- value(f)'. The
'resolved()' function can be used to check if a future is resolved or
not. An infix assignment operator '%<-%' exists for creating futures whose
values are accessible by the assigned variables (as promises), e.g. 'v %<-%
{ mandelbrot(-0.75, 0, side=3) }'. This package implements synchronous "lazy"
and "eager" futures, and asynchronous "multicore", "multisession" and ad hoc
"cluster" futures. Globals variables and functions are automatically identified
and exported. Required packages are attached in external R sessions whenever
needed. All types of futures are designed to behave the same such that the
exact same code work regardless of futures used or number of cores, background
sessions or cluster nodes available. Additional types of futures are provided by
other packages enhancing this package.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.1.0 dated 2016-10-10 and 1.1.1 dated 2016-10-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 11 ++++++++++- R/remote.R | 44 ++++++++++++++++++++++++-------------------- 4 files changed, 40 insertions(+), 27 deletions(-)
Title: A View Generator for Multidimensional Data
Description: A tool to explore wide data sets, by detecting, ranking
and plotting groups of statistically dependent columns.
Author: Thibault Sellam
Maintainer: Thibault Sellam <thibault.sellam@cwi.nl>
Diff between findviews versions 0.1.0 dated 2016-10-09 and 0.1.1 dated 2016-10-10
DESCRIPTION | 10 ++++++---- MD5 | 9 +++++---- NEWS.md |only R/web_app_plots.R | 2 +- README.md | 17 +++++++++++++++-- tests/testthat/test-findviews-trunk.R | 3 ++- 6 files changed, 29 insertions(+), 12 deletions(-)
Title: Spatial Graph Based Clustering Summaries for Spatial Point
Patterns
Description: Graph based clustering summaries for spatial point patterns.
Includes Connectivity function, Cumulative connectivity function and clustering
function, plus the triangle/triplet intensity function T.
Author: Tuomas Rajala
Maintainer: Tuomas Rajala <tuomas.rajala@iki.fi>
Diff between SGCS versions 2.3 dated 2015-03-09 and 2.4 dated 2016-10-10
SGCS-2.3/SGCS/README.md |only SGCS-2.4/SGCS/DESCRIPTION | 14 +++--- SGCS-2.4/SGCS/MD5 | 65 ++++++++++++++++------------- SGCS-2.4/SGCS/NAMESPACE | 4 + SGCS-2.4/SGCS/R/K-function.R | 3 - SGCS-2.4/SGCS/R/R-function.R | 4 - SGCS-2.4/SGCS/R/arcs.R |only SGCS-2.4/SGCS/R/clustering-function.R | 10 ++-- SGCS-2.4/SGCS/R/denominator-of-clustfun.R |only SGCS-2.4/SGCS/R/internalise_pp.R | 6 +- SGCS-2.4/SGCS/R/morpho-Area.R | 20 ++++---- SGCS-2.4/SGCS/R/morpho-Euler.R | 6 +- SGCS-2.4/SGCS/man/Kfun.Rd | 5 +- SGCS-2.4/SGCS/man/Rfun.Rd | 5 +- SGCS-2.4/SGCS/man/SGCS.Rd | 11 ++-- SGCS-2.4/SGCS/man/Tfun.Rd | 5 +- SGCS-2.4/SGCS/man/arcs.Rd |only SGCS-2.4/SGCS/man/bounding_box_xy.Rd | 3 - SGCS-2.4/SGCS/man/clustfun.Rd | 4 + SGCS-2.4/SGCS/man/clustfun_denominator.Rd |only SGCS-2.4/SGCS/man/confun.Rd | 20 ++++---- SGCS-2.4/SGCS/man/default_r.Rd | 3 - SGCS-2.4/SGCS/man/edge_distance.Rd | 3 - SGCS-2.4/SGCS/man/internal_to_ppp.Rd | 3 - SGCS-2.4/SGCS/man/internalise_pp.Rd | 7 +-- SGCS-2.4/SGCS/man/morphoArea.Rd | 5 +- SGCS-2.4/SGCS/man/morphoEuler.Rd | 3 - SGCS-2.4/SGCS/man/morphoLength.Rd | 3 - SGCS-2.4/SGCS/man/pairwise_distances.Rd | 3 - SGCS-2.4/SGCS/man/translation_weights.Rd | 3 - SGCS-2.4/SGCS/src/Components.cpp |only SGCS-2.4/SGCS/src/Components.h |only SGCS-2.4/SGCS/src/Pp.cpp | 21 ++++----- SGCS-2.4/SGCS/src/arcs.cpp | 2 SGCS-2.4/SGCS/src/clustfun-denominator.cpp |only SGCS-2.4/SGCS/src/confun.cpp |only SGCS-2.4/SGCS/src/getArcs.cpp |only SGCS-2.4/SGCS/src/morphoArea.cpp |only SGCS-2.4/SGCS/src/morphoEuler.cpp |only SGCS-2.4/SGCS/src/morphoLength.cpp |only 40 files changed, 138 insertions(+), 103 deletions(-)
Title: Bayesian Modeling and Analysis of Spatially Correlated Survival
Data
Description: Provides several Bayesian survival models for spatial/non-spatial survival data: marginal Bayesian Nonparametric models, marginal Bayesian proportional hazards models, generalized accelerated failure time frailty models, and standard semiparametric frailty models within the context of proportional hazards, proportional odds and accelerated failure time.
Author: Haiming Zhou <zhouh@niu.edu> and Tim Hanson <hansont@stat.sc.edu>
Maintainer: Haiming Zhou <zhouh@niu.edu>
Diff between spBayesSurv versions 1.0.4 dated 2016-08-16 and 1.0.5 dated 2016-10-10
spBayesSurv-1.0.4/spBayesSurv/R/SuperSurvRegBayes2.R |only spBayesSurv-1.0.4/spBayesSurv/man/SuperSurvRegBayes2.Rd |only spBayesSurv-1.0.5/spBayesSurv/DESCRIPTION | 10 spBayesSurv-1.0.5/spBayesSurv/MD5 | 44 spBayesSurv-1.0.5/spBayesSurv/NAMESPACE | 10 spBayesSurv-1.0.5/spBayesSurv/R/SuperSurvRegBayes.R |only spBayesSurv-1.0.5/spBayesSurv/R/frailtyGAFT.R | 1075 +++--- spBayesSurv-1.0.5/spBayesSurv/R/survregbayes.R | 1557 +++++----- spBayesSurv-1.0.5/spBayesSurv/R/survregbayes2.R | 1438 ++++----- spBayesSurv-1.0.5/spBayesSurv/R/wrappers.R | 72 spBayesSurv-1.0.5/spBayesSurv/man/SuperSurvRegBayes.Rd |only spBayesSurv-1.0.5/spBayesSurv/man/frailtyGAFT.Rd | 410 +- spBayesSurv-1.0.5/spBayesSurv/man/spBayesSurv-package.Rd | 2 spBayesSurv-1.0.5/spBayesSurv/man/survregbayes.Rd | 396 +- spBayesSurv-1.0.5/spBayesSurv/man/survregbayes2.Rd | 379 +- spBayesSurv-1.0.5/spBayesSurv/src/spSurv_AFT_BP.cpp | 327 +- spBayesSurv-1.0.5/spBayesSurv/src/spSurv_AFT_MPT.cpp | 12 spBayesSurv-1.0.5/spBayesSurv/src/spSurv_PHPOAFT_BP.cpp | 14 spBayesSurv-1.0.5/spBayesSurv/src/spSurv_PH_BP.cpp | 317 +- spBayesSurv-1.0.5/spBayesSurv/src/spSurv_PH_MPT.cpp | 29 spBayesSurv-1.0.5/spBayesSurv/src/spSurv_PO_BP.cpp | 317 +- spBayesSurv-1.0.5/spBayesSurv/src/spSurv_PO_MPT.cpp | 25 spBayesSurv-1.0.5/spBayesSurv/src/spSurv_common.cpp | 48 spBayesSurv-1.0.5/spBayesSurv/src/spSurv_common.h | 12 spBayesSurv-1.0.5/spBayesSurv/src/spSurv_frailty_GRF_LDTFP.cpp | 137 25 files changed, 3708 insertions(+), 2923 deletions(-)
Title: Segregation Measures for Multitype Spatial Point Patterns
Description: Summaries for measuring segregation/mingling in multitype spatial
point patterns with graph based neighbourhood description. Included indices:
Mingling, Shannon, Simpson (also the non-spatial) Included functionals:
Mingling, Shannon, Simpson, ISAR, MCI. Included neighbourhoods: Geometric, k-
nearest neighbours, Gabriel, Delaunay. Dixon's test.
Author: Tuomas Rajala
Maintainer: Tuomas Rajala <tuomas.rajala@iki.fi>
Diff between spatialsegregation versions 2.40 dated 2014-03-09 and 2.42 dated 2016-10-10
spatialsegregation-2.40/spatialsegregation/man/spatialsegregation-ISAR.Rd |only spatialsegregation-2.40/spatialsegregation/man/spatialsegregation-MCI.Rd |only spatialsegregation-2.40/spatialsegregation/man/spatialsegregation-biomass.Rd |only spatialsegregation-2.40/spatialsegregation/man/spatialsegregation-mingling.Rd |only spatialsegregation-2.40/spatialsegregation/man/spatialsegregation-segregationFun.Rd |only spatialsegregation-2.40/spatialsegregation/man/spatialsegregation-shannon.Rd |only spatialsegregation-2.40/spatialsegregation/man/spatialsegregation-simpson.Rd |only spatialsegregation-2.40/spatialsegregation/man/spatialsegregation-tests.Rd |only spatialsegregation-2.42/spatialsegregation/DESCRIPTION | 25 +-- spatialsegregation-2.42/spatialsegregation/MD5 | 48 +++--- spatialsegregation-2.42/spatialsegregation/NAMESPACE | 38 +++-- spatialsegregation-2.42/spatialsegregation/R/biomass.R | 32 +++- spatialsegregation-2.42/spatialsegregation/R/bivariate_tests.R | 26 +++ spatialsegregation-2.42/spatialsegregation/R/fun.R | 70 +++++++--- spatialsegregation-2.42/spatialsegregation/R/isar.R | 55 +++++-- spatialsegregation-2.42/spatialsegregation/R/mci.R | 25 ++- spatialsegregation-2.42/spatialsegregation/R/mingling.R | 50 +++++-- spatialsegregation-2.42/spatialsegregation/R/modifiers.R | 20 -- spatialsegregation-2.42/spatialsegregation/R/shannon.R | 37 ++++- spatialsegregation-2.42/spatialsegregation/R/simpson.R | 41 ++++- spatialsegregation-2.42/spatialsegregation/man/biomassF.Rd |only spatialsegregation-2.42/spatialsegregation/man/dixon.Rd |only spatialsegregation-2.42/spatialsegregation/man/isarF.Rd |only spatialsegregation-2.42/spatialsegregation/man/mciF.Rd |only spatialsegregation-2.42/spatialsegregation/man/minglingF.Rd |only spatialsegregation-2.42/spatialsegregation/man/print.segtest.Rd |only spatialsegregation-2.42/spatialsegregation/man/segregationFun.Rd |only spatialsegregation-2.42/spatialsegregation/man/sg.modify.pp.Rd |only spatialsegregation-2.42/spatialsegregation/man/shannonF.Rd |only spatialsegregation-2.42/spatialsegregation/man/simpsonF.Rd |only spatialsegregation-2.42/spatialsegregation/src/Fun.cpp | 4 spatialsegregation-2.42/spatialsegregation/src/Graph.cpp | 15 +- spatialsegregation-2.42/spatialsegregation/src/Pp.cpp | 9 - spatialsegregation-2.42/spatialsegregation/src/biomass.cpp | 12 + 34 files changed, 339 insertions(+), 168 deletions(-)
More information about spatialsegregation at CRAN
Permanent link
Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models.
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield <j.hadfield@ed.ac.uk>
Diff between MCMCglmm versions 2.22.1 dated 2016-01-30 and 2.23 dated 2016-10-10
MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-Lsurface.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-MsurfaceMCMC.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-Pmarg.NI.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-Psurface.NI.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-Psurface.flat.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-Psurface.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-Psurface.persp.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-Psurface.persp2.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-PsurfaceMCMC.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-dinvgamma.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-dnorm.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-dnorm1.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-muvar.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-talk.BPMsurface.pdf |only MCMCglmm-2.22.1/MCMCglmm/vignettes/Lecture1-talk.Lsurface.pdf |only 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More information about haploReconstruct at CRAN
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Title: A Method to Search for Differentially Expressed Genes and to
Detect Recurrent Chromosomal Copy Number Aberrations
Description: A fold change rank based method is presented to search for
differentially expressed genes and to detect recurrent chromosomal copy number aberrations.
This method may be useful for high-throughput biological data (microarray, sequencing, ...).
Probabilities are associated with genes/probes in the dataset and there is no problem of
multiple tests when using this method. For aCGH data, segmentation results are obtained by
merging the significant probes detected.
Author: Doulaye Dembele
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
Diff between fcros versions 1.5 dated 2016-07-01 and 1.5.1 dated 2016-10-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/fcros-package.Rd | 4 ++-- src/fcros.cpp | 12 ++++++------ 4 files changed, 15 insertions(+), 15 deletions(-)
Title: Graph Theory Analysis of Brain MRI Data
Description: A set of tools for performing graph theory analysis of brain MRI
data. It is best suited to data from a Freesurfer analysis (cortical
thickness, volumes, local gyrification index, surface area), but also works
with e.g., tractography data from FSL. It contains a graphical user
interface for graph visualization and data exploration.
Author: Christopher G. Watson <cgwatson@bu.edu>
Maintainer: Christopher G. Watson <cgwatson@bu.edu>
Diff between brainGraph versions 0.62.0 dated 2016-04-23 and 0.72.0 dated 2016-10-10
DESCRIPTION | 8 MD5 | 212 +++++++++++--------- NAMESPACE | 9 R/NBS.R | 147 ++++++-------- R/SPM.R | 51 ++-- R/analysis_random_graphs.R | 4 R/assign_lobes.R | 48 +++- R/auc_diff.R |only R/boot_global.R | 2 R/brainGraph_init.R | 39 ++- R/centr_lev.R | 13 - R/check_resid.R | 13 - R/cor_diff_test.R |only R/corr_matrix.R | 25 +- R/count_homologous.R | 14 - R/count_interlobar.R | 14 - R/dti_create_mats.R | 77 ++++--- R/edge_asymmetry.R | 18 - R/graph_attr_dt.R | 14 - R/graph_contract_brain.R | 12 - R/graph_efficiency.R | 10 R/individ_contrib.R | 4 R/make_empty_brainGraph.R | 9 R/part_coeff.R | 34 ++- R/permute_group.R | 4 R/permute_group_auc.R |only R/plot_boot.R | 16 - R/plot_brainGraph.R | 309 ++++++++++++++++++++++++++++-- R/plot_brainGraph_gui.R | 52 ++++- R/plot_brainGraph_list.R | 85 -------- R/plot_brainGraph_mni.R | 19 - R/plot_corr_mat.R | 26 +- R/plot_global.R | 35 ++- R/plot_perm_diffs.R | 44 ++-- R/plot_rich_norm.R | 43 ++-- R/plot_vertex_measures.R | 35 +-- R/rich_club_attrs.R |only R/rich_club_coeff.R | 4 R/rich_club_norm.R | 24 +- R/rich_core.R | 14 - R/robustness.R | 4 R/set_brainGraph_attributes.R | 103 ++++------ R/sim_rand_graph_clust.R | 16 - R/sim_rand_graph_par.R | 11 - R/small_world.R | 4 R/spatial_dist.R | 21 -- R/update_brainGraph_gui.R | 398 ++++++++++++--------------------------- R/vec_transform.R | 6 R/vertex_attr_dt.R | 20 + R/vulnerability.R | 12 - R/within_module_degree_z_score.R | 19 + R/write_brainnet.R | 37 ++- data/aal116.rda |binary data/aal2.120.rda |only data/aal2.94.rda |only data/aal90.rda |binary data/brainsuite.rda |binary data/destrieux.rda |binary data/destrieux.scgm.rda |binary data/dk.rda |binary data/dk.scgm.rda |binary data/dkt.rda |binary data/dkt.scgm.rda |binary data/dosenbach160.rda |only data/hoa112.rda |binary data/lpba40.rda |binary man/NBS.Rd | 15 - man/SPM.Rd | 9 man/aal116.Rd | 5 man/aal2.120.Rd |only man/aal2.94.Rd |only man/aal90.Rd | 5 man/assign_lobes.Rd | 2 man/auc_diff.Rd |only man/boot_global.Rd | 2 man/brainGraph_init.Rd | 22 +- man/brainsuite.Rd | 5 man/centr_lev.Rd | 4 man/cor.diff.test.Rd |only man/corr.matrix.Rd | 28 +- man/destrieux.Rd | 5 man/destrieux.scgm.Rd | 5 man/dk.Rd | 6 man/dk.scgm.Rd | 6 man/dkt.Rd | 6 man/dkt.scgm.Rd | 6 man/dosenbach160.Rd |only man/dti_create_mats.Rd | 6 man/edge_asymmetry.Rd | 4 man/graph.contract.brain.Rd | 4 man/graph.efficiency.Rd | 4 man/hoa112.Rd | 5 man/lpba40.Rd | 5 man/part.coeff.Rd | 5 man/permute.group.auc.Rd |only man/plot_boot.Rd | 1 man/plot_brainGraph.Rd | 56 ++++- man/plot_brainGraph_list.Rd | 24 -- man/plot_brainGraph_mni.Rd | 10 man/plot_corr_mat.Rd | 6 man/plot_global.Rd | 8 man/plot_perm_diffs.Rd | 7 man/plot_rich_norm.Rd | 9 man/plot_vertex_measures.Rd | 21 +- man/rich.club.attrs.Rd |only man/rich.club.norm.Rd | 16 - man/rich.core.Rd | 4 man/set.brainGraph.attributes.Rd | 5 man/sim.rand.graph.clust.Rd | 5 man/update_brainGraph_gui.Rd | 4 man/vertex_attr_dt.Rd | 7 man/vulnerability.Rd | 4 man/within_module_deg_z_score.Rd | 5 man/write.brainnet.Rd | 24 +- 114 files changed, 1379 insertions(+), 1139 deletions(-)
Title: An API Wrapper for the Bureau of Labor Statistics (BLS)
Description: Scrapes various data from the Bureau of Labor Statistics, which is the statistical branch of the United States Department of Labor. The package has additional functions to help parse, analyze and visualize the data.
Author: Kris Eberwein [aut, cre]
Maintainer: Kris Eberwein <eberwein@knights.ucf.edu>
Diff between blscrapeR versions 1.0.1 dated 2016-10-03 and 1.0.2 dated 2016-10-10
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 8 ++++++++ R/get_bls_state.R | 4 ++-- R/qcew_api.R | 2 +- inst/doc/Employment_and_Unemployment.html | 4 ++-- inst/doc/Inflation_and_Prices.html | 4 ++-- inst/doc/Mapping_BLS_Data.html | 4 ++-- inst/doc/Pay_and_Benefits.html | 4 ++-- inst/doc/QCEW_API.html | 4 ++-- inst/doc/qcew.html | 4 ++-- tests/testthat/test_bls_csv.R | 2 +- 12 files changed, 38 insertions(+), 30 deletions(-)
Title: Fast Multivariate Normal and Student's t Methods
Description: Provides computationally efficient tools related to
the multivariate normal and Student's t distributions. The main functionalities are:
simulating multivariate random vectors, evaluating multivariate
normal or Student's t densities and Mahalanobis distances. These tools are very efficient
thanks to the use of C++ code and of the OpenMP API.
Author: Matteo Fasiolo, using the C++ parallel RNG of Thijs van den Berg and
Ziggurat algorithm of Jens Maurer and Steven Watanabe (boost)
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Diff between mvnfast versions 0.1.6 dated 2016-10-09 and 0.1.7 dated 2016-10-10
DESCRIPTION | 8 ++-- MD5 | 16 ++++----- R/dmvt.R | 12 ++++++- R/rmvt.R | 4 +- inst/CITATION | 2 - inst/doc/mvnfast.html | 82 ++++++++++++++++++++++++------------------------- inst/tests/test-dmvt.R | 3 - man/dmvt.Rd | 4 +- man/rmvt.Rd | 4 +- 9 files changed, 72 insertions(+), 63 deletions(-)
Title: A Collection of Functions Related to Item Response Theory (IRT)
Description: A collection of functions useful in learning and practicing IRT,
which can be combined into larger programs. Provides basic CTT analysis,
a simple common interface to the estimation of item
parameters in IRT models for binary responses with three different programs
(ICL, BILOG-MG, and ltm), ability estimation (MLE, BME, EAP, WLE, plausible
values), item and person fit statistics, scaling methods (MM, MS, Stocking-Lord,
and the complete Hebaera method), and a rich array of parametric and
non-parametric (kernel) plots. Estimates and plots Haberman's interaction model
when all items are dichotomously scored.
Author: Ivailo Partchev
Maintainer: Ivailo Partchev <partchev@gmail.com>
Diff between irtoys versions 0.1.7 dated 2014-01-22 and 0.2.0 dated 2016-10-10
irtoys-0.1.7/irtoys/README |only irtoys-0.1.7/irtoys/man/tgp.Rd |only irtoys-0.2.0/irtoys/DESCRIPTION | 27 irtoys-0.2.0/irtoys/MD5 | 119 ++- irtoys-0.2.0/irtoys/NAMESPACE | 41 - irtoys-0.2.0/irtoys/NEWS | 14 irtoys-0.2.0/irtoys/R/ability.R | 74 +- irtoys-0.2.0/irtoys/R/estimate.R | 551 +++++++++--------- irtoys-0.2.0/irtoys/R/interaction.R |only irtoys-0.2.0/irtoys/R/irtoys-package.R | 278 +++++---- irtoys-0.2.0/irtoys/R/itemfit.R | 395 ++++++------- irtoys-0.2.0/irtoys/R/nonpar.R | 389 +++++++----- irtoys-0.2.0/irtoys/R/readin.R | 240 ++++--- irtoys-0.2.0/irtoys/R/scale.R | 328 +++++----- irtoys-0.2.0/irtoys/R/tracelines.R | 850 ++++++++++++++-------------- irtoys-0.2.0/irtoys/R/utils.R | 13 irtoys-0.2.0/irtoys/build |only irtoys-0.2.0/irtoys/data/b1.RData |only irtoys-0.2.0/irtoys/data/b2.RData |only irtoys-0.2.0/irtoys/data/b3.RData |only irtoys-0.2.0/irtoys/inst |only irtoys-0.2.0/irtoys/man/Scored.Rd | 6 irtoys-0.2.0/irtoys/man/Scored2pl.Rd | 12 irtoys-0.2.0/irtoys/man/Unscored.Rd | 11 irtoys-0.2.0/irtoys/man/ability.Rd |only irtoys-0.2.0/irtoys/man/api.Rd | 41 - irtoys-0.2.0/irtoys/man/b1.Rd |only irtoys-0.2.0/irtoys/man/b2.Rd |only irtoys-0.2.0/irtoys/man/b3.Rd |only irtoys-0.2.0/irtoys/man/dpv.Rd | 44 - irtoys-0.2.0/irtoys/man/eap.Rd | 38 - irtoys-0.2.0/irtoys/man/erf.Rd |only irtoys-0.2.0/irtoys/man/est.Rd | 264 ++++---- irtoys-0.2.0/irtoys/man/iif.Rd | 52 - irtoys-0.2.0/irtoys/man/interactionModel.Rd |only irtoys-0.2.0/irtoys/man/irf.Rd | 65 +- irtoys-0.2.0/irtoys/man/irfPlot.Rd |only irtoys-0.2.0/irtoys/man/irtoys-package.Rd | 139 ++-- irtoys-0.2.0/irtoys/man/itf.Rd | 190 ++---- irtoys-0.2.0/irtoys/man/mlebme.Rd | 53 - irtoys-0.2.0/irtoys/man/normal.qu.Rd | 43 - irtoys-0.2.0/irtoys/man/npp.Rd | 76 +- irtoys-0.2.0/irtoys/man/plot.iif.Rd | 42 - irtoys-0.2.0/irtoys/man/plot.imp.Rd |only irtoys-0.2.0/irtoys/man/plot.irf.Rd | 42 - irtoys-0.2.0/irtoys/man/plot.tif.Rd | 35 - irtoys-0.2.0/irtoys/man/plot.trf.Rd | 35 - irtoys-0.2.0/irtoys/man/qrs.Rd | 30 irtoys-0.2.0/irtoys/man/read.ip.bilog.Rd | 31 - irtoys-0.2.0/irtoys/man/read.ip.icl.Rd | 35 - irtoys-0.2.0/irtoys/man/read.qu.icl.Rd | 26 irtoys-0.2.0/irtoys/man/read.resp.Rd | 57 - irtoys-0.2.0/irtoys/man/rim.Rd |only irtoys-0.2.0/irtoys/man/sca.Rd | 85 +- irtoys-0.2.0/irtoys/man/sco.Rd | 30 irtoys-0.2.0/irtoys/man/scoreMetric.Rd |only irtoys-0.2.0/irtoys/man/scp.Rd | 40 - irtoys-0.2.0/irtoys/man/sim.Rd | 24 irtoys-0.2.0/irtoys/man/tet.Rd | 30 irtoys-0.2.0/irtoys/man/tgf.Rd |only irtoys-0.2.0/irtoys/man/tia.Rd | 48 - irtoys-0.2.0/irtoys/man/tif.Rd | 42 - irtoys-0.2.0/irtoys/man/trf.Rd | 40 - irtoys-0.2.0/irtoys/man/tsc.Rd | 36 - irtoys-0.2.0/irtoys/man/wle.Rd | 40 - irtoys-0.2.0/irtoys/src |only irtoys-0.2.0/irtoys/vignettes |only 67 files changed, 2708 insertions(+), 2393 deletions(-)
Title: Analysis of Diffusion Weighted Imaging (DWI) Data
Description: Diffusion Weighted Imaging (DWI) is a Magnetic Resonance Imaging
modality, that measures diffusion of water in tissues like the human
brain. The package contains R-functions to process diffusion-weighted
data. The functionality includes diffusion tensor imaging (DTI),
diffusion kurtosis imaging (DKI), modeling for high angular resolution
diffusion weighted imaging (HARDI) using Q-ball-reconstruction and
tensor mixture models, several methods for structural adaptive
smoothing including POAS and msPOAS, and a streamline fiber tracking
for tensor and tensor mixture models.
The package provides functionality to manipulate and visualize results
in 2D and 3D.
Author: Karsten Tabelow [aut, cre],
Joerg Polzehl [aut],
Felix Anker [ctb]
Maintainer: Karsten Tabelow <karsten.tabelow@wias-berlin.de>
Diff between dti versions 1.2-6 dated 2016-09-14 and 1.2-6.1 dated 2016-10-10
DESCRIPTION | 8 ++-- MD5 | 18 +++++----- src/Converter.cpp | 77 ++++++++++++++++++++++++------------------- src/Converter.h | 50 ++++++++++++++++++++++++++-- src/Fiber.cpp | 22 +++--------- src/Fiber.h | 68 ++++++++++++++++++++++++++++++++------ src/Fibertracking.cpp | 38 ++++++--------------- src/Vector.h | 1 src/Voxel.cpp | 20 ----------- src/Voxel.h | 89 +++++++++++++++++++++++++++++++++++++++++--------- 10 files changed, 256 insertions(+), 135 deletions(-)
Title: Correlations in R
Description: A tool for exploring correlations.
It makes it possible to easily perform routine tasks when
exploring correlation matrices such as ignoring the diagonal,
focusing on the correlations of certain variables against others,
or rearranging and visualising the matrix in terms of the
strength of the correlations.
Author: Simon Jackson [aut, cre]
Maintainer: Simon Jackson <drsimonjackson@gmail.com>
Diff between corrr versions 0.2.0 dated 2016-08-11 and 0.2.1 dated 2016-10-10
DESCRIPTION | 6 +- MD5 | 26 +++++----- R/cor_df.R | 100 +++++++++++++++++++++++++----------------- R/correlate.R | 2 R/dataframe.R | 7 ++ R/matrix.R | 4 - R/output.R | 55 ++++++++++++++++++----- README.md | 10 +--- inst/doc/using-corrr.html | 18 +++---- man/correlate.Rd | 2 man/fashion.Rd | 17 ++++++- man/network_plot.Rd | 10 +++- man/rplot.Rd | 14 ++++- tests/testthat/test-fashion.R | 27 ++++++++++- 14 files changed, 200 insertions(+), 98 deletions(-)
Title: Analysis and Visualisation of Ecological Communities
Description: Provides a flexible, extendable representation of an ecological community and a range of functions for analysis and visualisation, focusing on food web, body mass and numerical abundance data. Allows inter-web comparisons such as examining changes in community structure over environmental, temporal or spatial gradients.
Author: Lawrence Hudson with contributions from Dan Reuman and Rob Emerson
Maintainer: Lawrence Hudson <quicklizard@googlemail.com>
Diff between cheddar versions 0.1-630 dated 2015-08-24 and 0.1-631 dated 2016-10-10
DESCRIPTION | 8 +- LICENSE | 2 MD5 | 22 +++---- inst/doc/CheddarQuickstart.pdf |binary inst/doc/Collections.pdf |binary inst/doc/Community.pdf |binary inst/doc/ImportExport.pdf |binary inst/doc/PlotsAndStats.pdf |binary man/cheddar.Rd | 20 +++--- src/anneal.cpp | 123 ++++++++++++++++++++--------------------- src/shortest_paths.cpp | 61 ++++---------------- src/trophic_chains.cpp | 115 +------------------------------------- 12 files changed, 105 insertions(+), 246 deletions(-)
Title: Bayesian Ordination and Regression AnaLysis
Description: Bayesian approaches for analyzing multivariate data in ecology. Estimation is performed using Markov Chain Monte Carlo (MCMC) methods via JAGS. Three types of models may be fitted: 1) With explanatory variables only, boral fits independent column GLMs to each column of the response matrix; 2) With latent variables only, boral fits a purely latent variable model for model-based unconstrained ordination; 3) With explanatory and latent variables, boral fits correlated column GLMs with latent variables to account for any residual correlation between the columns of the response matrix.
Author: Francis K.C. Hui
Maintainer: Francis Hui <fhui28@gmail.com>
Diff between boral versions 1.1 dated 2016-09-26 and 1.1.1 dated 2016-10-10
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/auxilaryfunctions.R | 44 ++++++++++++++++++++++++++------------------ R/boral.jags.R | 18 +++++++++++------- R/unseenfunctions.R | 8 ++++---- man/coefsplot.Rd | 7 +------ man/create.life.Rd | 2 +- man/get.more.measures.Rd | 4 ++-- 8 files changed, 56 insertions(+), 49 deletions(-)
Title: Interpolate Data for Smooth Animations
Description: In order to create smooth animation between states of data,
tweening is necessary. This package provides a range of functions for
creating tweened data that plugs right into functions such as gg_animate()
from the 'gganimate' package. Furthermore it adds a number of vectorized
interpolaters for common R data types such as numeric, date and colour.
Author: Thomas Lin Pedersen [aut, cre]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between tweenr versions 0.1.4 dated 2016-08-30 and 0.1.5 dated 2016-10-10
DESCRIPTION | 8 +++---- MD5 | 14 ++++++------- R/RcppExports.R | 2 - R/interpolate.R | 12 ++++++++--- R/tween.R | 8 +++++-- README.md | 4 +-- src/RcppExports.cpp | 50 +++++++++++++++++++++++------------------------ src/stateInterpolate.cpp | 6 ++++- 8 files changed, 59 insertions(+), 45 deletions(-)
Title: 'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
Description: Provides 'ggplot2' 'stats' that estimate seasonally adjusted series
and rolling summaries such as rolling average on the fly for time series.
Author: Peter Ellis [aut, cre],
Christophe Sax [ctb]
Maintainer: Peter Ellis <peter.ellis2013nz@gmail.com>
Diff between ggseas versions 0.4.0 dated 2016-03-27 and 0.5.0 dated 2016-10-10
DESCRIPTION | 9 +++++---- MD5 | 11 ++++++++--- R/ggsdc.R | 34 +++++++++++++++++++++------------- build |only inst |only man/ggsdc.Rd | 6 +++++- vignettes |only 7 files changed, 39 insertions(+), 21 deletions(-)
Title: Tools for Interacting with 'PostgreSQL' / 'PostGIS' Databases
Description: Functions to convert geometry and 'hstore' data types from
'PostgreSQL' into standard R objects, as well as to simplify
the import of R data frames (including spatial data frames) into 'PostgreSQL'.
Author: Philippe Marchand [aut, cre],
Richard Ellison [aut]
Maintainer: Philippe Marchand <pmarchand@sesync.org>
Diff between postGIStools versions 0.2.0 dated 2016-08-29 and 0.2.1 dated 2016-10-10
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 +++++++ R/postgis_insert_update.R | 2 +- tests/testthat/test_insert_update.R | 29 ++++++++++++++++++++++++++++- 5 files changed, 43 insertions(+), 9 deletions(-)
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider <schneider.393@osu.edu>
Diff between NSM3 versions 1.7 dated 2016-09-07 and 1.8 dated 2016-10-10
DESCRIPTION | 8 - MD5 | 4 R/theil.R | 272 ++++++++++++++++++++++++++++++------------------------------ 3 files changed, 142 insertions(+), 142 deletions(-)
Title: A Future API for R
Description: A Future API for R is provided. In programming, a future is an
abstraction for a value that may be available at some point in the future.
The state of a future can either be unresolved or resolved. As soon as it
is resolved, the value is available. Futures are useful constructs in for
instance concurrent evaluation, e.g. parallel processing and distributed
processing on compute clusters. The purpose of this package is to provide
a lightweight interface for using futures in R. Functions 'future()' and
'value()' exist for creating futures and requesting their values, e.g.
'f <- future({ mandelbrot(-0.75, 0, side=3) })' and 'v <- value(f)'. The
'resolved()' function can be used to check if a future is resolved or
not. An infix assignment operator '%<-%' exists for creating futures whose
values are accessible by the assigned variables (as promises), e.g. 'v %<-%
{ mandelbrot(-0.75, 0, side=3) }'. This package implements synchronous "lazy"
and "eager" futures, and asynchronous "multicore", "multisession" and ad hoc
"cluster" futures. Globals variables and functions are automatically identified
and exported. Required packages are attached in external R sessions whenever
needed. All types of futures are designed to behave the same such that the
exact same code work regardless of futures used or number of cores, background
sessions or cluster nodes available. Additional types of futures are provided by
other packages enhancing this package.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.0.1 dated 2016-07-04 and 1.1.0 dated 2016-10-10
future-1.0.1/future/man/futureAssign.Rd |only future-1.1.0/future/DESCRIPTION | 46 +- future-1.1.0/future/MD5 | 180 +++++---- future-1.1.0/future/NAMESPACE | 12 future-1.1.0/future/NEWS | 39 ++ future-1.1.0/future/R/ClusterFuture-class.R | 70 ++- future-1.1.0/future/R/ClusterRegistry.R | 34 + future-1.1.0/future/R/ConstantFuture-class.R | 10 future-1.1.0/future/R/EagerFuture-class.R | 32 + future-1.1.0/future/R/Future-class.R | 200 ++++++---- future-1.1.0/future/R/LazyFuture-class.R | 44 +- future-1.1.0/future/R/MulticoreFuture-class.R | 36 + future-1.1.0/future/R/MultiprocessFuture-class.R | 12 future-1.1.0/future/R/MultisessionFuture-class.R | 6 future-1.1.0/future/R/UniprocessFuture-class.R | 20 - future-1.1.0/future/R/availableCores.R | 13 future-1.1.0/future/R/cluster.R | 26 - future-1.1.0/future/R/constant.R | 3 future-1.1.0/future/R/eager.R | 33 - future-1.1.0/future/R/flapply.R | 45 +- future-1.1.0/future/R/future.R | 180 ++++++++- future-1.1.0/future/R/futureAssign.R | 51 -- future-1.1.0/future/R/futureAssign_OP.R | 36 + future-1.1.0/future/R/futureCall.R | 8 future-1.1.0/future/R/futures.R | 4 future-1.1.0/future/R/globals.R | 137 ++++--- future-1.1.0/future/R/globals_OP.R |only future-1.1.0/future/R/label_OP.R |only future-1.1.0/future/R/lazy.R | 34 - future-1.1.0/future/R/multicore.R | 29 - future-1.1.0/future/R/multiprocess.R | 28 - future-1.1.0/future/R/multisession.R | 22 - future-1.1.0/future/R/nbrOfWorkers.R | 4 future-1.1.0/future/R/plan_OP.R | 2 future-1.1.0/future/R/remote.R | 30 - future-1.1.0/future/R/resolve.R | 2 future-1.1.0/future/R/tweak.R | 2 future-1.1.0/future/R/tweakExpression.R | 141 ++++++- future-1.1.0/future/R/tweak_OP.R | 2 future-1.1.0/future/R/tweak_parallel_PSOCK.R |only future-1.1.0/future/R/utils.R | 4 future-1.1.0/future/R/values.R | 2 future-1.1.0/future/build/vignette.rds |binary future-1.1.0/future/demo/mandelbrot.R | 3 future-1.1.0/future/inst/doc/future-1-overview.html | 92 ++--- future-1.1.0/future/inst/doc/future-2-issues.html | 116 ++---- future-1.1.0/future/inst/doc/future-2-issues.md.rsp | 190 ++-------- future-1.1.0/future/inst/doc/future-3-topologies.html | 10 future-1.1.0/future/inst/doc/future-3-topologies.md.rsp | 14 future-1.1.0/future/inst/doc/future-4-startup.html |only future-1.1.0/future/inst/doc/future-4-startup.md.rsp |only future-1.1.0/future/man/ClusterFuture-class.Rd | 39 +- future-1.1.0/future/man/ConstantFuture-class.Rd | 18 future-1.1.0/future/man/EagerFuture-class.Rd | 18 future-1.1.0/future/man/Future-class.Rd | 12 future-1.1.0/future/man/LazyFuture-class.Rd | 18 future-1.1.0/future/man/MulticoreFuture-class.Rd | 12 future-1.1.0/future/man/MultiprocessFuture-class.Rd | 9 future-1.1.0/future/man/UniprocessFuture-class.Rd | 4 future-1.1.0/future/man/availableCores.Rd | 15 future-1.1.0/future/man/cluster.Rd | 44 +- future-1.1.0/future/man/eager.Rd | 29 - future-1.1.0/future/man/flapply.Rd |only future-1.1.0/future/man/future.Rd | 274 +++++++++++++-- future-1.1.0/future/man/futures.Rd | 4 future-1.1.0/future/man/getExpression.Rd | 2 future-1.1.0/future/man/getGlobalsAndPackages.Rd |only future-1.1.0/future/man/grapes-globals-grapes.Rd |only future-1.1.0/future/man/grapes-label-grapes.Rd |only future-1.1.0/future/man/grapes-plan-grapes.Rd | 2 future-1.1.0/future/man/grapes-tweak-grapes.Rd | 2 future-1.1.0/future/man/lazy.Rd | 21 - future-1.1.0/future/man/multicore.Rd | 31 - future-1.1.0/future/man/multiprocess.Rd | 29 - future-1.1.0/future/man/multisession.Rd | 31 + future-1.1.0/future/man/nbrOfWorkers.Rd | 14 future-1.1.0/future/man/remote.Rd | 42 +- future-1.1.0/future/man/resolve.Rd | 2 future-1.1.0/future/man/run.Rd |only future-1.1.0/future/man/tweak.Rd | 6 future-1.1.0/future/man/tweak_parallel_PSOCK.Rd |only future-1.1.0/future/man/values.Rd | 2 future-1.1.0/future/tests/ClusterRegistry.R | 12 future-1.1.0/future/tests/Future-class.R | 25 + future-1.1.0/future/tests/early-signaling.R | 10 future-1.1.0/future/tests/future,labels.R |only future-1.1.0/future/tests/globals,formulas.R |only future-1.1.0/future/tests/globals,manual.R |only future-1.1.0/future/tests/globals,subassignment.R |only future-1.1.0/future/tests/incl/end.R | 3 future-1.1.0/future/tests/incl/start,load-only.R | 5 future-1.1.0/future/tests/multicore.R | 2 future-1.1.0/future/tests/multisession.R | 25 + future-1.1.0/future/tests/nested_futures.R |only future-1.1.0/future/tests/rng.R | 5 future-1.1.0/future/tests/tweak.R | 16 future-1.1.0/future/tests/utils.R | 10 future-1.1.0/future/vignettes/future-2-issues.md.rsp | 190 ++-------- future-1.1.0/future/vignettes/future-3-topologies.md.rsp | 14 future-1.1.0/future/vignettes/future-4-startup.md.rsp |only 100 files changed, 1783 insertions(+), 1218 deletions(-)
Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions. This package implements the
following distributions: Bernoulli, beta-binomial, beta-negative
binomial, beta prime, Bhattacharjee, Birnbaum-Saunders,
bivariate normal, bivariate Poisson, categorical, Dirichlet,
Dirichlet-multinomial, discrete Laplace, discrete normal,
discrete uniform, discrete Weibull, Frechet, gamma-Poisson,
generalized extreme value, Gompertz, generalized Pareto,
Gumbel, half-Cauchy, half-normal, half-t, Huber density,
inverse chi-squared, inverse-gamma, Kumaraswamy, Laplace,
logarithmic, Lomax, multivariate hypergeometric, multinomial,
non-standard t, non-standard beta, normal mixture,
Poisson mixture, Pareto, power, reparametrized beta,
Rayleigh, Skellam, slash, triangular, truncated normal,
truncated Poisson, Tukey lambda, Wald, zero-inflated binomial,
zero-inflated negative binomial, zero-inflated Poisson.
Author: Tymoteusz Wolodzko
Maintainer: Tymoteusz Wolodzko <twolodzko+extraDistr@gmail.com>
Diff between extraDistr versions 1.8.1 dated 2016-07-29 and 1.8.2 dated 2016-10-10
extraDistr-1.8.1/extraDistr/man/DiscrWeibull.Rd |only extraDistr-1.8.2/extraDistr/DESCRIPTION | 25 extraDistr-1.8.2/extraDistr/MD5 | 228 - extraDistr-1.8.2/extraDistr/NAMESPACE | 2 extraDistr-1.8.2/extraDistr/NEWS.md | 13 extraDistr-1.8.2/extraDistr/R/RcppExports.R | 10 extraDistr-1.8.2/extraDistr/R/bernoulli-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/beta-binomial-distribution.R | 6 extraDistr-1.8.2/extraDistr/R/beta-negative-binomial-distribution.R | 6 extraDistr-1.8.2/extraDistr/R/beta-prime-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/bhattacharjee-distribution.R | 6 extraDistr-1.8.2/extraDistr/R/birnbaum-saunders-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/bivariate-normal-distribution.R | 4 extraDistr-1.8.2/extraDistr/R/bivariate-poisson-distribution.R | 4 extraDistr-1.8.2/extraDistr/R/categorical-distribution.R | 18 extraDistr-1.8.2/extraDistr/R/dirichlet-distribution.R | 4 extraDistr-1.8.2/extraDistr/R/dirichlet-multinomial-distribution.R | 4 extraDistr-1.8.2/extraDistr/R/discrete-laplace-distribution.R | 6 extraDistr-1.8.2/extraDistr/R/discrete-normal-distribution.R | 2 extraDistr-1.8.2/extraDistr/R/discrete-uniform-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/discrete-weibull-distribution.R | 18 extraDistr-1.8.2/extraDistr/R/frechet-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/gamma-poisson-distribution.R | 6 extraDistr-1.8.2/extraDistr/R/gev-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/gompertz-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/gpd-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/gumbel-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/half-cauchy-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/half-normal-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/half-t-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/huber-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/inverse-gamma-distribution.R | 2 extraDistr-1.8.2/extraDistr/R/kumaraswamy-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/laplace-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/logarithmic-series-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/lomax-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/mixture-of-normal-distributions.R | 6 extraDistr-1.8.2/extraDistr/R/mixture-of-poisson-distributions.R | 6 extraDistr-1.8.2/extraDistr/R/multinomial-distribution.R | 4 extraDistr-1.8.2/extraDistr/R/multivariate-hypergeometric-distribution.R | 16 extraDistr-1.8.2/extraDistr/R/non-standard-beta-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/non-standard-t-distribution.R | 28 extraDistr-1.8.2/extraDistr/R/pareto-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/power-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/proportion-distribution.R | 54 extraDistr-1.8.2/extraDistr/R/rayleigh-distribution.R | 8 extraDistr-1.8.2/extraDistr/R/skellam-distribution.R | 4 extraDistr-1.8.2/extraDistr/R/slash-distribution.R | 6 extraDistr-1.8.2/extraDistr/R/triangular-distribution.R | 10 extraDistr-1.8.2/extraDistr/R/truncated-normal-distribution.R | 47 extraDistr-1.8.2/extraDistr/R/truncated-poisson-distributtion.R | 8 extraDistr-1.8.2/extraDistr/R/tuckey-lambda-distribution.R |only extraDistr-1.8.2/extraDistr/R/wald-distribution.R | 6 extraDistr-1.8.2/extraDistr/R/zero-inflated-binomial-distribution.R | 9 extraDistr-1.8.2/extraDistr/R/zero-inflated-negative-binomial-distribution.R | 9 extraDistr-1.8.2/extraDistr/R/zero-inflated-poisson-distribution.R | 10 extraDistr-1.8.2/extraDistr/man/DiscreteWeibull.Rd |only extraDistr-1.8.2/extraDistr/man/PropBeta.Rd | 46 extraDistr-1.8.2/extraDistr/man/Triangular.Rd | 2 extraDistr-1.8.2/extraDistr/man/TruncNormal.Rd | 39 extraDistr-1.8.2/extraDistr/man/TuckeyLambda.Rd |only extraDistr-1.8.2/extraDistr/src/RcppExports.cpp | 1364 +++++----- extraDistr-1.8.2/extraDistr/src/bernoulli-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/beta-binomial-distribution.cpp | 19 extraDistr-1.8.2/extraDistr/src/beta-negative-binomial-distribution.cpp | 21 extraDistr-1.8.2/extraDistr/src/beta-prime-distribution.cpp | 10 extraDistr-1.8.2/extraDistr/src/bhattacharjee-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/birnbaum-saunders-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/bivariate-normal-distribution.cpp | 11 extraDistr-1.8.2/extraDistr/src/bivariate-poisson-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/categorical-distribution.cpp | 133 extraDistr-1.8.2/extraDistr/src/dirichlet-distribution.cpp | 37 extraDistr-1.8.2/extraDistr/src/dirichlet-multinomial-distribution.cpp | 61 extraDistr-1.8.2/extraDistr/src/discrete-laplace-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/discrete-normal-distribution.cpp | 2 extraDistr-1.8.2/extraDistr/src/discrete-uniform-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/discrete-weibull-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/frechet-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/gamma-poisson-distribution.cpp | 17 extraDistr-1.8.2/extraDistr/src/gev-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/gompertz-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/gpd-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/gumbel-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/half-cauchy-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/half-normal-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/half-t-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/huber-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/inverse-gamma-distribution.cpp | 2 extraDistr-1.8.2/extraDistr/src/kumaraswamy-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/laplace-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/logarithmic-series-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/lomax-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/mixture-of-normal-distributions.cpp | 100 extraDistr-1.8.2/extraDistr/src/mixture-of-poisson-distributions.cpp | 96 extraDistr-1.8.2/extraDistr/src/multinomial-distribution.cpp | 86 extraDistr-1.8.2/extraDistr/src/multivariate-hypergeometric-distribution.cpp | 40 extraDistr-1.8.2/extraDistr/src/non-standard-t-distribution.cpp | 16 extraDistr-1.8.2/extraDistr/src/non-standart-beta-distribution.cpp | 23 extraDistr-1.8.2/extraDistr/src/pareto-distribution.cpp | 10 extraDistr-1.8.2/extraDistr/src/power-distribution.cpp | 10 extraDistr-1.8.2/extraDistr/src/proportion-distribution.cpp | 23 extraDistr-1.8.2/extraDistr/src/rayleigh-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/shared.cpp | 50 extraDistr-1.8.2/extraDistr/src/shared.h | 7 extraDistr-1.8.2/extraDistr/src/skellam-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/slash-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/triangular-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/truncated-normal-distribution.cpp | 62 extraDistr-1.8.2/extraDistr/src/truncated-poisson-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/tuckey-lambda-distribution.cpp |only extraDistr-1.8.2/extraDistr/src/wald-distribution.cpp | 6 extraDistr-1.8.2/extraDistr/src/zero-inflated-binomial-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/zero-inflated-negative-binomial-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/src/zero-inflated-poisson-distribution.cpp | 8 extraDistr-1.8.2/extraDistr/tests/testthat/test-NAs.R |only extraDistr-1.8.2/extraDistr/tests/testthat/test-discrete.R | 2 extraDistr-1.8.2/extraDistr/tests/testthat/test-inappropriate-parameters.R | 195 - extraDistr-1.8.2/extraDistr/tests/testthat/test-quantile-functions.R | 31 118 files changed, 2040 insertions(+), 1436 deletions(-)