Title: R Interface for Bokeh
Description: A native R plotting library that provides a flexible declarative interface for creating interactive web-based graphics, backed by the Bokeh visualization library <http://bokeh.pydata.org/>.
Author: Ryan Hafen [aut, cre],
Kenton Russell [ctb],
Jonathan Owen [ctb],
Barret Schloerke [ctb],
Saptasrhi Guha [ctb],
Continuum Analytics, Inc. [aut, cph] (Bokeh library in htmlwidgets/lib,
http://bokeh.pydata.org)
Maintainer: Ryan Hafen <rhafen@gmail.com>
Diff between rbokeh versions 0.4.2 dated 2016-03-08 and 0.5.0 dated 2016-10-11
rbokeh-0.4.2/rbokeh/data/flightFreq.rda |only rbokeh-0.5.0/rbokeh/DESCRIPTION | 21 rbokeh-0.5.0/rbokeh/MD5 | 194 +- rbokeh-0.5.0/rbokeh/NAMESPACE | 6 rbokeh-0.5.0/rbokeh/NEWS.md | 69 + rbokeh-0.5.0/rbokeh/R/attr_mapping.R | 60 rbokeh-0.5.0/rbokeh/R/bokeh_render_json.R | 6 rbokeh-0.5.0/rbokeh/R/constants.R | 74 - rbokeh-0.5.0/rbokeh/R/fig_axis.R | 43 rbokeh-0.5.0/rbokeh/R/fig_callback.R | 8 rbokeh-0.5.0/rbokeh/R/fig_gmap.R | 34 rbokeh-0.5.0/rbokeh/R/fig_grid.R | 365 +++-- rbokeh-0.5.0/rbokeh/R/fig_hover.R | 40 rbokeh-0.5.0/rbokeh/R/fig_layer.R | 51 rbokeh-0.5.0/rbokeh/R/fig_legend.R | 2 rbokeh-0.5.0/rbokeh/R/fig_range.R | 22 rbokeh-0.5.0/rbokeh/R/fig_tap.R | 24 rbokeh-0.5.0/rbokeh/R/fig_title.R |only rbokeh-0.5.0/rbokeh/R/fig_tool.R | 37 rbokeh-0.5.0/rbokeh/R/figure.R | 130 - rbokeh-0.5.0/rbokeh/R/helpers.R | 379 +---- rbokeh-0.5.0/rbokeh/R/helpers_extra_pars.R | 52 rbokeh-0.5.0/rbokeh/R/json_helpers.R | 6 rbokeh-0.5.0/rbokeh/R/layer__utils.R | 94 - rbokeh-0.5.0/rbokeh/R/layer_bar.R | 97 + rbokeh-0.5.0/rbokeh/R/layer_glyphs.R | 64 rbokeh-0.5.0/rbokeh/R/layer_hexbin.R | 39 rbokeh-0.5.0/rbokeh/R/layer_image.R | 90 - rbokeh-0.5.0/rbokeh/R/layer_lines.R | 134 + rbokeh-0.5.0/rbokeh/R/layer_map.R | 3 rbokeh-0.5.0/rbokeh/R/layer_points.R | 25 rbokeh-0.5.0/rbokeh/R/layer_shapes.R | 67 rbokeh-0.5.0/rbokeh/R/layer_stats.R | 147 +- rbokeh-0.5.0/rbokeh/R/layer_text.R | 17 rbokeh-0.5.0/rbokeh/R/make_glyph.R | 110 - rbokeh-0.5.0/rbokeh/R/misc.R | 7 rbokeh-0.5.0/rbokeh/R/output_gist.R | 21 rbokeh-0.5.0/rbokeh/R/output_html.R | 60 rbokeh-0.5.0/rbokeh/R/output_json.R | 8 rbokeh-0.5.0/rbokeh/R/output_prerender.R | 11 rbokeh-0.5.0/rbokeh/R/output_save.R | 25 rbokeh-0.5.0/rbokeh/R/point_types.R | 10 rbokeh-0.5.0/rbokeh/R/prepare_figure.R | 236 ++- rbokeh-0.5.0/rbokeh/R/rbokeh-package.R | 11 rbokeh-0.5.0/rbokeh/R/shiny.R | 12 rbokeh-0.5.0/rbokeh/R/theme_axis.R | 57 rbokeh-0.5.0/rbokeh/R/theme_grid.R | 44 rbokeh-0.5.0/rbokeh/R/theme_legend.R | 21 rbokeh-0.5.0/rbokeh/R/theme_palettes.R | 152 ++ rbokeh-0.5.0/rbokeh/R/theme_plot.R | 41 rbokeh-0.5.0/rbokeh/R/theme_title.R |only rbokeh-0.5.0/rbokeh/R/themes.R | 36 rbokeh-0.5.0/rbokeh/README.md | 19 rbokeh-0.5.0/rbokeh/build |only rbokeh-0.5.0/rbokeh/data/flightfreq.rda |only rbokeh-0.5.0/rbokeh/inst/doc |only rbokeh-0.5.0/rbokeh/inst/htmlwidgets/lib/bokehjs/bokeh-compiler.min.js | 36 rbokeh-0.5.0/rbokeh/inst/htmlwidgets/lib/bokehjs/bokeh-widgets.min.css | 38 rbokeh-0.5.0/rbokeh/inst/htmlwidgets/lib/bokehjs/bokeh-widgets.min.js | 98 - rbokeh-0.5.0/rbokeh/inst/htmlwidgets/lib/bokehjs/bokeh.min.css | 2 rbokeh-0.5.0/rbokeh/inst/htmlwidgets/lib/bokehjs/bokeh.min.js | 140 +- rbokeh-0.5.0/rbokeh/inst/htmlwidgets/lib/bokehjs/loader.css |only rbokeh-0.5.0/rbokeh/inst/htmlwidgets/rbokeh.js | 73 - rbokeh-0.5.0/rbokeh/inst/htmlwidgets/rbokeh.yaml | 3 rbokeh-0.5.0/rbokeh/man/catjitter.Rd | 7 rbokeh-0.5.0/rbokeh/man/elements.Rd | 2 rbokeh-0.5.0/rbokeh/man/figure.Rd | 10 rbokeh-0.5.0/rbokeh/man/gmap.Rd | 19 rbokeh-0.5.0/rbokeh/man/gmap_style.Rd | 15 rbokeh-0.5.0/rbokeh/man/grid_plot.Rd | 45 rbokeh-0.5.0/rbokeh/man/ly_abline.Rd | 16 rbokeh-0.5.0/rbokeh/man/ly_annular_wedge.Rd | 25 rbokeh-0.5.0/rbokeh/man/ly_annulus.Rd | 23 rbokeh-0.5.0/rbokeh/man/ly_arc.Rd | 26 rbokeh-0.5.0/rbokeh/man/ly_bar.Rd | 39 rbokeh-0.5.0/rbokeh/man/ly_boxplot.Rd | 15 rbokeh-0.5.0/rbokeh/man/ly_crect.Rd | 2 rbokeh-0.5.0/rbokeh/man/ly_density.Rd | 6 rbokeh-0.5.0/rbokeh/man/ly_hist.Rd | 6 rbokeh-0.5.0/rbokeh/man/ly_image.Rd | 4 rbokeh-0.5.0/rbokeh/man/ly_image_url.Rd | 2 rbokeh-0.5.0/rbokeh/man/ly_quantile.Rd | 4 rbokeh-0.5.0/rbokeh/man/ly_text.Rd | 2 rbokeh-0.5.0/rbokeh/man/ly_wedge.Rd | 25 rbokeh-0.5.0/rbokeh/man/nyctaxihex.Rd | 11 rbokeh-0.5.0/rbokeh/man/palettes.Rd | 16 rbokeh-0.5.0/rbokeh/man/point_types.Rd | 3 rbokeh-0.5.0/rbokeh/man/print_model_json.Rd | 2 rbokeh-0.5.0/rbokeh/man/set_palette.Rd |only rbokeh-0.5.0/rbokeh/man/set_theme.Rd | 31 rbokeh-0.5.0/rbokeh/man/sub_names.Rd | 2 rbokeh-0.5.0/rbokeh/man/theme_axis.Rd | 10 rbokeh-0.5.0/rbokeh/man/theme_grid.Rd | 10 rbokeh-0.5.0/rbokeh/man/theme_legend.Rd | 25 rbokeh-0.5.0/rbokeh/man/theme_plot.Rd | 43 rbokeh-0.5.0/rbokeh/man/theme_title.Rd |only rbokeh-0.5.0/rbokeh/man/x_axis.Rd | 12 rbokeh-0.5.0/rbokeh/man/y_axis.Rd | 12 rbokeh-0.5.0/rbokeh/tests/testthat/test-css-svg.R | 7 rbokeh-0.5.0/rbokeh/tests/testthat/test-figures.R | 672 ++++++++-- rbokeh-0.5.0/rbokeh/vignettes |only 101 files changed, 2970 insertions(+), 1850 deletions(-)
More information about PRISMAstatement at CRAN
Permanent link
Title: Tools to Convert ODM Files
Description: Transformation of 'ODM' (see <http://www.cdisc.org/odm>) files into R format, Microsoft Office format, 'CDA' format and vice versa. 'ODM' format is commonly used in clinical trials. Semantic annotation (such as 'UMLS', 'SNOMED' or 'LOINC' codes) are transformed accordingly.
Author: Martin Dugas
Maintainer: Martin Dugas <dugas@uni-muenster.de>
Diff between ODMconverter versions 2.1 dated 2015-04-02 and 2.2 dated 2016-10-11
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 1 + R/ODM2R.R | 38 +++++++++++++++++++++++--------------- man/ODM2R.Rd | 8 +++++++- 5 files changed, 40 insertions(+), 25 deletions(-)
Title: Calculate the NLTT Statistic
Description: Provides functions to calculate the normalised Lineage-Through-
Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures
the difference between two Lineage-Through-Time curves, where each curve is
normalised both in time and in number of lineages.
Author: Thijs Janzen [aut, cre],
Richel Bilderbeek [aut]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between nLTT versions 1.3 dated 2016-10-05 and 1.3.1 dated 2016-10-11
nLTT-1.3.1/nLTT/DESCRIPTION | 6 nLTT-1.3.1/nLTT/MD5 | 44 +- nLTT-1.3.1/nLTT/NAMESPACE | 2 nLTT-1.3.1/nLTT/R/get_average_nltt_matrix.R | 27 - nLTT-1.3.1/nLTT/README.md |only nLTT-1.3.1/nLTT/build/vignette.rds |binary nLTT-1.3.1/nLTT/inst/doc/trees_with_root_edge.R | 4 nLTT-1.3.1/nLTT/inst/doc/trees_with_root_edge.Rmd | 4 nLTT-1.3.1/nLTT/inst/doc/trees_with_root_edge.html | 18 - nLTT-1.3.1/nLTT/inst/doc/vignette_get_nltt_values.R | 112 +++---- nLTT-1.3.1/nLTT/inst/doc/vignette_get_nltt_values.Rmd | 127 ++++---- nLTT-1.3.1/nLTT/inst/doc/vignette_get_nltt_values.html | 155 +++++----- nLTT-1.3.1/nLTT/inst/doc/vignette_nltts_plot.R | 25 - nLTT-1.3.1/nLTT/inst/doc/vignette_nltts_plot.html | 32 +- nLTT-1.3.1/nLTT/inst/doc/vignette_stretch_nltt_matrix.html | 36 +- nLTT-1.3.1/nLTT/inst/doc/walkthrough.R |only nLTT-1.3.1/nLTT/inst/doc/walkthrough.Rmd |only nLTT-1.3.1/nLTT/inst/doc/walkthrough.html |only nLTT-1.3.1/nLTT/man/nLTT-package.Rd | 64 ++-- nLTT-1.3.1/nLTT/tests/testthat/test_get_average_nltt_matrix.R | 41 -- nLTT-1.3.1/nLTT/vignettes/trees_with_root_edge.Rmd | 4 nLTT-1.3.1/nLTT/vignettes/vignette_get_nltt_values.Rmd | 102 +++--- nLTT-1.3.1/nLTT/vignettes/walkthrough.Rmd |only nLTT-1.3/nLTT/inst/doc/vignette_get_average_nltt.R |only nLTT-1.3/nLTT/inst/doc/vignette_get_average_nltt.Rmd |only nLTT-1.3/nLTT/inst/doc/vignette_get_average_nltt.html |only nLTT-1.3/nLTT/man/get_average_nltt_matrix_impl_1.Rd |only nLTT-1.3/nLTT/man/get_average_nltt_matrix_impl_2.Rd |only 28 files changed, 397 insertions(+), 406 deletions(-)
Title: 'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
Description: Provides 'ggplot2' 'stats' that estimate seasonally adjusted series
and rolling summaries such as rolling average on the fly for time series.
Author: Peter Ellis [aut, cre],
Christophe Sax [ctb]
Maintainer: Peter Ellis <peter.ellis2013nz@gmail.com>
Diff between ggseas versions 0.5.0 dated 2016-10-10 and 0.5.1 dated 2016-10-11
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++------ R/ggseas.R |only R/misc_doc.R | 2 -- build/vignette.rds |binary inst/doc/ggsdc.Rmd | 2 +- inst/doc/ggsdc.html | 4 ++-- man/ggseas-package.Rd |only vignettes/ggsdc.Rmd | 2 +- 9 files changed, 15 insertions(+), 15 deletions(-)
Title: Fragility Index
Description: Implements and extends the fragility index calculation for
dichotomous results as described in Walsh, Srinathan, McAuley,
Mrkobrada, Levine, Ribic, Molnar, Dattani, Burke, Guyatt,
Thabane, Walter, Pogue, and Devereaux (2014)
<DOI:10.1016/j.jclinepi.2013.10.019>.
Author: Kipp Johnson [aut, cre]
Maintainer: Kipp Johnson <kipp.william.johnson@gmail.com>
Diff between fragilityindex versions 0.0.4 dated 2016-10-06 and 0.0.7 dated 2016-10-11
DESCRIPTION | 16 ++++++++-------- MD5 | 17 +++++++++++++---- NAMESPACE | 12 ++++++++++++ R/fragility.index.R | 9 ++++++--- R/glmfit2table.R |only R/logisticfragility.R |only R/logisticfragilityinternal.R |only R/revfragility.index.R |only README.md |only man/fragility.index.Rd | 6 ++++-- man/glmfit2table.Rd |only man/logisticfragility.Rd |only man/logisticfragilityinternal.Rd |only man/revfragility.index.Rd |only 14 files changed, 43 insertions(+), 17 deletions(-)
More information about fragilityindex at CRAN
Permanent link
Title: Forest Growth Model Utilities
Description: Growth models and forest production require existing data
manipulation and the creation of new data, structured from basic forest
inventory data. The purpose of this package is provide functions to support
these activities.
Author: Clayton Vieira Fraga Filho,
Ana Paula Simiqueli,
Gilson Fernandes da Silva,
Miqueias Fernandes,
Wagner Amorim da Silva Altoe
Maintainer: Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>
Diff between Fgmutils versions 0.9.3 dated 2016-09-26 and 0.9.4 dated 2016-10-11
DESCRIPTION | 8 +-- MD5 | 22 +++++---- NAMESPACE | 3 + NEWS | 3 + R/avaliaEstimativas.R | 104 +++++++++++++++++++------------------------- R/avaliaVolumeAgeBased.R |only R/avaliaVolumeAvancado.R | 1 R/evalAgeBased.R |only R/projectBaseOriented.R |only R/roundAge.R | 12 +++-- R/separaDados.R | 6 +- man/avaliaVolumeAgeBased.Rd |only man/evalAgeBased.Rd |only man/projectBaseOriented.Rd |only man/roundAge.Rd | 4 + 15 files changed, 85 insertions(+), 78 deletions(-)
Title: Bayesian Regression Models using Stan
Description: Fit Bayesian generalized (non-)linear multilevel models
using Stan for full Bayesian inference.
Author: Paul-Christian Buerkner [aut, cre]
Maintainer: Paul-Christian Buerkner <paul.buerkner@gmail.com>
Diff between brms versions 1.0.1 dated 2016-09-16 and 1.1.0 dated 2016-10-11
brms-1.0.1/brms/inst/doc/brms_families.R |only brms-1.0.1/brms/inst/doc/brms_families.html |only brms-1.1.0/brms/DESCRIPTION | 10 brms-1.1.0/brms/MD5 | 73 +- brms-1.1.0/brms/R/brm.R | 3 brms-1.1.0/brms/R/brmsfit-helpers.R | 155 ++-- brms-1.1.0/brms/R/brmsfit-methods.R | 104 +-- brms-1.1.0/brms/R/brmsformula.R | 32 brms-1.1.0/brms/R/data-helpers.R | 125 ++- brms-1.1.0/brms/R/extract_draws.R | 177 +++-- brms-1.1.0/brms/R/linear_predictor.R | 96 ++ brms-1.1.0/brms/R/loglik.R | 3 brms-1.1.0/brms/R/make_stancode.R | 75 +- brms-1.1.0/brms/R/make_standata.R | 124 +-- brms-1.1.0/brms/R/misc.R | 73 +- brms-1.1.0/brms/R/plots.R | 13 brms-1.1.0/brms/R/rename.R | 125 ++- brms-1.1.0/brms/R/stan-helpers.R | 166 +++-- brms-1.1.0/brms/R/stan-predictor.R | 242 ++++--- brms-1.1.0/brms/R/sysdata.rda |binary brms-1.1.0/brms/R/validate.R | 564 +++++++++++------ brms-1.1.0/brms/build/vignette.rds |binary brms-1.1.0/brms/inst/NEWS.Rd | 48 + brms-1.1.0/brms/inst/chunks/fun_inv_gaussian.stan | 4 brms-1.1.0/brms/inst/chunks/tdataC_inv_gaussian.stan |only brms-1.1.0/brms/inst/chunks/tdataD_inv_gaussian.stan |only brms-1.1.0/brms/inst/doc/brms.pdf |binary brms-1.1.0/brms/inst/doc/brms_families.Rmd | 12 brms-1.1.0/brms/inst/doc/brms_families.pdf |only brms-1.1.0/brms/man/brmsformula.Rd | 32 brms-1.1.0/brms/man/residuals.brmsfit.Rd | 15 brms-1.1.0/brms/tests/testthat/tests.brmsfit-helpers.R | 10 brms-1.1.0/brms/tests/testthat/tests.brmsfit-methods.R | 24 brms-1.1.0/brms/tests/testthat/tests.make_stancode.R | 107 ++- brms-1.1.0/brms/tests/testthat/tests.make_standata.R | 89 +- brms-1.1.0/brms/tests/testthat/tests.plots.R | 2 brms-1.1.0/brms/tests/testthat/tests.rename.R | 45 + brms-1.1.0/brms/tests/testthat/tests.stan-helpers.R | 35 - brms-1.1.0/brms/tests/testthat/tests.validate.R | 36 - brms-1.1.0/brms/vignettes/brms_families.Rmd | 12 40 files changed, 1677 insertions(+), 954 deletions(-)
Title: Bayesian Multilevel Mediation
Description: Easy estimation of Bayesian multilevel mediation models with Stan.
Author: Matti Vuorre [aut, cre]
Maintainer: Matti Vuorre <mv2521@columbia.edu>
Diff between bmlm versions 1.0.0 dated 2016-07-19 and 1.2.1 dated 2016-10-11
bmlm-1.0.0/bmlm/R/bmlm.R |only bmlm-1.0.0/bmlm/inst/stan |only bmlm-1.0.0/bmlm/man/getpps.Rd |only bmlm-1.2.1/bmlm/DESCRIPTION | 16 ++- bmlm-1.2.1/bmlm/MD5 | 48 +++++++---- bmlm-1.2.1/bmlm/NAMESPACE | 3 bmlm-1.2.1/bmlm/NEWS.md | 28 ++++++ bmlm-1.2.1/bmlm/R/bmlm-package.R |only bmlm-1.2.1/bmlm/R/mlm.R | 85 ++++++++++++-------- bmlm-1.2.1/bmlm/R/mlm_plot.R | 148 +++++++++++++++++++++++------------ bmlm-1.2.1/bmlm/R/stanmodels.R |only bmlm-1.2.1/bmlm/R/utils.R | 53 ++---------- bmlm-1.2.1/bmlm/R/zzz.R |only bmlm-1.2.1/bmlm/README.md | 18 ++-- bmlm-1.2.1/bmlm/cleanup |only bmlm-1.2.1/bmlm/cleanup.win |only bmlm-1.2.1/bmlm/exec |only bmlm-1.2.1/bmlm/inst/chunks |only bmlm-1.2.1/bmlm/man/bmlm.Rd | 2 bmlm-1.2.1/bmlm/man/mlm.Rd | 38 ++++---- bmlm-1.2.1/bmlm/man/mlm_pars_plot.Rd | 6 - bmlm-1.2.1/bmlm/man/mlm_path_plot.Rd | 18 +--- bmlm-1.2.1/bmlm/man/mlm_summary.Rd | 10 -- bmlm-1.2.1/bmlm/src |only bmlm-1.2.1/bmlm/tools |only 25 files changed, 276 insertions(+), 197 deletions(-)
Title: Adaptive Sum of Powered Score Test
Description: R codes for the (adaptive) Sum of Powered Score ('SPU' and 'aSPU')
tests, inverse variance weighted Sum of Powered score ('SPUw' and 'aSPUw') tests
and gene-based and some pathway based association tests (Pathway based Sum of
Powered Score tests ('SPUpath'), adaptive 'SPUpath' ('aSPUpath') test, 'GEEaSPU'
test for multiple traits - single 'SNP' (single-nucleotide-polymorphism)
association in generalized estimation equations, 'MTaSPUs' test for multiple
traits - single 'SNP' association with Genome Wide Association Studies ('GWAS')
summary statistics, Gene-based Association Test that uses an extended Simes
procedure ('GATES'), Hybrid Set-based Test ('HYST') and extended version
of 'GATES' test for pathway-based association testing ('GATES-Simes'). ).
The tests can be used with genetic and other data sets with covariates. The
response variable is binary or quantitative. Summary; (1) Single trait-'SNP' set
association with individual-level data ('aSPU', 'aSPUw', 'aSPUr'), (2) Single trait-'SNP'
set association with summary statistics ('aSPUs'), (3) Single trait-pathway
association with individual-level data ('aSPUpath'), (4) Single trait-pathway
association with summary statistics ('aSPUsPath'), (5) Multiple traits-single
'SNP' association with individual-level data ('GEEaSPU'), (6) Multiple traits-
single SNP association with summary statistics ('MTaSPUs'), (7) Multiple traits-'SNP' set association with summary statistics('MTaSPUsSet'), (8) Multiple traits-pathway association with summary statistics('MTaSPUsSetPath').
Author: Il-Youp Kwak and others (See Author(s) in each function manual)
Maintainer: Il-Youp Kwak <ikwak@umn.edu>
Diff between aSPU versions 1.44 dated 2016-09-22 and 1.45 dated 2016-10-11
DESCRIPTION | 8 ++++---- MD5 | 40 ++++++++++++++++++++-------------------- R/MTaSPUs.R | 4 +++- R/MTaSPUsSet.R | 2 +- R/MTaSPUsSetScore.R | 2 +- R/aSPUboot.R | 2 +- R/aSPUboot2.R | 2 +- R/aSPUperm.R | 2 +- R/aSPUperm2.R | 2 +- R/aSPUpermC2.R | 2 +- R/aSPUr.R | 1 + R/aSPUs.R | 3 +-- R/aSPUsim1.R | 2 +- R/aSPUsim2.R | 2 +- R/aSPUsimC2.R | 2 +- R/aSPUwboot.R | 4 ++-- R/aSPUwperm.R | 2 +- R/aSPUwsim.R | 2 +- inst/doc/MTaSPUsSet.Rmd | 4 ++-- inst/doc/MTaSPUsSet.html | 4 ++-- vignettes/MTaSPUsSet.Rmd | 4 ++-- 21 files changed, 49 insertions(+), 47 deletions(-)
Title: Fitting Step-Functions
Description: Allows to fit step-functions to univariate serial data where neither the number of jumps nor their positions is known.
Author: Timo Aspelmeier [cre, aut],
Thomas Hotz [aut],
Hannes Sieling [aut],
Pein Florian [ctb]
Maintainer: Timo Aspelmeier <timo.aspelmeier@mathematik.uni-goettingen.de>
Diff between stepR versions 1.0-5 dated 2016-10-05 and 1.0-5.1 dated 2016-10-11
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- src/BinTree.h | 1 + src/Bounds.cpp | 1 + src/Jump.h | 2 ++ src/Step.h | 1 + 6 files changed, 13 insertions(+), 8 deletions(-)
Title: An Enhanced Chart for Simple and Truthful Representation of
Single Observations over Multiple Classes
Description: The sinaplot is a data visualization chart suitable for plotting
any single variable in a multiclass data set. It is an enhanced jitter strip
chart, where the width of the jitter is controlled by the density
distribution of the data within each class.
Author: Nikos Sidiropoulos [aut, cre],
Sina Hadi Sohi [aut],
Nicolas Rapin [aut],
Frederik Otzen Bagger [aut]
Maintainer: Nikos Sidiropoulos <nikos.sidiro@gmail.com>
Diff between sinaplot versions 0.1.5 dated 2016-05-17 and 1.0.0 dated 2016-10-11
DESCRIPTION | 15 +- MD5 | 22 +- NAMESPACE | 9 - NEWS | 58 ++++++- R/sinaplot.R | 367 ++++++++++++++++++++++--------------------------- README.md | 1 inst/doc/SinaPlot.R | 19 +- inst/doc/SinaPlot.Rmd | 27 ++- inst/doc/SinaPlot.html | 123 ++++++---------- man/blood.Rd | 2 man/sinaplot.Rd | 88 +++++------ vignettes/SinaPlot.Rmd | 27 ++- 12 files changed, 381 insertions(+), 377 deletions(-)
Title: Non-Parametric Bayesian Spectrum Estimation for Multirate Data
Description: Computes linear Bayesian spectral estimates from multirate
data for second-order stationary time series. Provides credible
intervals and methods for plotting various spectral estimates.
Author: Ben Powell [aut, cre],
Guy Nason [aut]
Maintainer: Ben Powell <ben.powell@bristol.ac.uk>
Diff between regspec versions 2.3 dated 2016-08-26 and 2.4 dated 2016-10-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/regspec17.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Utilities for the Simulation and Analysis of Random Fields
Description: Various utilities are provided that might be used in spatial statistics and elsewhere. It delivers a method for solving linear equations that checks the sparsity of the matrix before any algorithm is used. Furthermore, it includes the Struve functions.
Author: Martin Schlather [aut, cre], Reinhard Furrer [ctb], Martin Kroll [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFieldsUtils versions 0.3.3 dated 2016-09-12 and 0.3.3.1 dated 2016-10-11
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/zzz.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
More information about RandomFieldsUtils at CRAN
Permanent link
Title: Simulation and Analysis of Random Fields
Description: Methods for the inference on and the simulation of Gaussian fields are provided, as well as methods for the simulation of extreme value random fields.
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Olga Moreva [aut], Jonas Auel[ctr], Peter Menck [ctr], Sebastian Gross [ctr], Ulrike Ober [ctb], Christoph Berreth [ctr], Katharina Burmeister [ctb], Juliane Manitz [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFields versions 3.1.24 dated 2016-09-12 and 3.1.24.1 dated 2016-10-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/zzz.R | 2 -- data/weather.rda |binary 4 files changed, 6 insertions(+), 8 deletions(-)
Title: Piecewise Structural Equation Modeling
Description: Implements piecewise structural equation models.
Author: Jon Lefcheck
Maintainer: Jon Lefcheck <jslefche@vims.edu>
Diff between piecewiseSEM versions 1.1.3 dated 2016-07-11 and 1.2.0 dated 2016-10-11
DESCRIPTION | 8 +- MD5 | 50 ++++++------ NAMESPACE | 1 NEWS.md | 13 +++ R/endogenous.reverse.R | 44 ++++++++--- R/filter.exogenous.R | 51 ++++++++----- R/get.basis.set.R | 21 +++++ R/get.dag.R | 31 +++++-- R/get.formula.list.R | 4 - R/get.random.formula.R | 30 ++----- R/get.scaled.data.R | 7 + R/get.scaled.model.R | 2 R/get.sort.dag.R | 44 +++-------- R/rsquared.R |only R/sem.basis.set.R | 171 ++++++++++++++++++++++++++------------------ R/sem.coefs.R | 69 ++++++++++------- R/sem.missing.paths.R | 51 ++++++++----- R/sem.model.fits.R | 34 +++++--- R/sem.plot.R | 3 README.md | 4 - inst/doc/piecewiseSEM.Rmd | 6 - inst/doc/piecewiseSEM.html | 14 +-- man/endogenous.reverse.Rd | 6 + man/filter.exogenous.Rd | 49 +----------- man/piecewiseSEM-package.Rd | 6 - man/rsquared.Rd |only vignettes/piecewiseSEM.Rmd | 6 - 27 files changed, 418 insertions(+), 307 deletions(-)
Title: Flexible BUGS-Compatible System for Hierarchical Statistical
Modeling and Algorithm Development
Description: Flexible application of algorithms to models specified in the BUGS
language. Algorithms can be written in the NIMBLE language and made available to
any model.
Author: Perry de Valpine, Christopher Paciorek, Daniel Turek, Cliff Anderson-
Bergman, Duncan Temple Lang
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimble versions 0.6 dated 2016-09-02 and 0.6-1 dated 2016-10-11
DESCRIPTION | 6 INSTALL | 6 MD5 | 289 ++--- NAMESPACE | 3 NEWS | 16 R/BUGS_model.R | 5 R/BUGS_modelDef.R | 30 R/BUGS_testBUGS.R | 4 R/MCMC_conjugacy.R | 5 R/MCMC_run.R | 2 R/RCfunction_compile.R | 2 R/cppDefs_RCfunction.R | 30 R/cppDefs_core.R | 2 R/cppDefs_cppProject.R | 77 + R/cppInterfaces_modelValues.R | 46 R/cppInterfaces_models.R | 58 - R/cppInterfaces_nimbleFunctions.R | 351 ++++-- R/cppInterfaces_otherTypes.R | 256 ++-- R/cppInterfaces_utils.R | 140 +- R/genCpp_processSpecificCalls.R | 12 R/genCpp_sizeProcessing.R | 93 + R/nimbleFunction_core.R | 4 R/nimbleFunction_keywordProcessing.R | 44 R/nimbleFunction_nodeFunction.R | 3 R/nimbleFunction_nodeFunctionNew.R | 3 R/nimbleProject.R | 127 ++ R/options.R | 4 R/setNimbleInternalFunctions.R | 2 R/types_nimbleFunctionList.R | 9 R/types_nodeFxnVector.R | 40 R/types_numericLists.R | 252 ++-- R/types_util.R | 23 README.md | 8 configure | 12 configure.ac | 12 configure.win | 5 inst/CppCode/GNUmakefile | 4 inst/CppCode/ModelClassUtils.cpp | 13 inst/CppCode/NamedObjects.cpp | 20 inst/CppCode/RcppNimbleUtils.cpp |only inst/CppCode/RcppUtils.cpp | 1456 +++------------------------- inst/CppCode/accessorClasses.cpp | 304 ++--- inst/CppCode/dists.cpp | 1 inst/CppCode/dllFinalizer.cpp |only inst/CppCode/nimDists.cpp | 13 inst/include/nimble/ModelClassUtils.h | 6 inst/include/nimble/NamedObjects.h | 8 inst/include/nimble/NimArr.h | 7 inst/include/nimble/NimArrBase.h | 4 inst/include/nimble/RcppNimbleUtils.h |only inst/include/nimble/RcppUtils.h | 357 ------ inst/include/nimble/accessorClasses.h | 26 inst/include/nimble/dllFinalizer.h |only inst/include/nimble/dynamicRegistrations.h |only inst/include/nimble/nodeFun.h | 1 inst/tests/test_utils.R | 62 - man/BUGSdeclClass-class.Rd | 2 man/Categorical.Rd | 2 man/CmodelBaseClass-class.Rd | 2 man/CnimbleFunctionBase-class.Rd | 2 man/Constraint.Rd | 2 man/Dirichlet.Rd | 2 man/Exponential.Rd | 2 man/Interval.Rd | 2 man/MCMCconf-class.Rd | 2 man/MCMCsuite.Rd | 2 man/MCMCsuiteClass-class.Rd | 2 man/Multinomial.Rd | 2 man/Multivariate-t.Rd | 2 man/MultivariateNormal.Rd | 2 man/Rmatrix2mvOneVar.Rd |only man/RmodelBaseClass-class.Rd | 2 man/Wishart.Rd | 2 man/asRow.Rd | 2 man/autoBlock.Rd | 2 man/buildAuxiliaryFilter.Rd | 2 man/buildBootstrapFilter.Rd | 2 man/buildEnsembleKF.Rd | 2 man/buildLiuWestFilter.Rd | 2 man/buildMCEM.Rd | 2 man/buildMCMC.Rd | 2 man/checkInterrupt.Rd | 2 man/codeBlockClass-class.Rd | 2 man/combine_MCMC_comparison_results.Rd | 2 man/compareMCMCs.Rd | 2 man/compileNimble.Rd | 2 man/configureMCMC.Rd | 2 man/decide.Rd | 2 man/decideAndJump.Rd | 2 man/declare.Rd | 2 man/deregisterDistributions.Rd | 2 man/getBUGSexampleDir.Rd | 2 man/getDefinition.Rd | 2 man/getLoadingNamespace.Rd | 2 man/getNimbleOption.Rd | 2 man/getParam.Rd | 2 man/getsize.Rd | 2 man/identityMatrix.Rd | 2 man/initializeModel.Rd | 2 man/is.nf.Rd | 2 man/makeParamInfo.Rd | 2 man/make_MCMC_comparison_pages.Rd | 2 man/modelBaseClass-class.Rd | 2 man/modelDefClass-class.Rd | 2 man/modelValues.Rd | 2 man/modelValuesBaseClass-class.Rd | 2 man/modelValuesConf.Rd | 2 man/nfMethod.Rd | 2 man/nfVar.Rd | 2 man/nimArray.Rd | 2 man/nimCat.Rd | 2 man/nimCopy.Rd | 2 man/nimDim.Rd | 2 man/nimInteger.Rd | 2 man/nimMatrix.Rd | 2 man/nimNumeric.Rd | 2 man/nimPrint.Rd | 2 man/nimStop.Rd | 2 man/nimble-internal.Rd | 1 man/nimbleCode.Rd | 2 man/nimbleFunction.Rd | 2 man/nimbleFunctionBase-class.Rd | 2 man/nimbleFunctionList-class.Rd |only man/nimbleFunctionVirtual.Rd | 2 man/nimbleModel.Rd | 2 man/nimbleOptions.Rd | 2 man/nodeFunctions.Rd | 2 man/rankSample.Rd | 2 man/readBUGSmodel.Rd | 2 man/registerDistributions.Rd | 2 man/rename_MCMC_comparison_method.Rd | 2 man/reshape_comparison_results.Rd | 2 man/resize.Rd | 2 man/run.time.Rd | 2 man/runMCMC.Rd | 2 man/samplers.Rd | 2 man/setAndCalculate.Rd | 2 man/setAndCalculateOne.Rd | 2 man/setSize.Rd | 2 man/setupOutputs.Rd | 2 man/simNodes.Rd | 2 man/simNodesMV.Rd | 2 man/singleVarAccessClass-class.Rd | 2 man/t.Rd | 2 man/testBUGSmodel.Rd | 2 man/updateMCMCcomparisonWithHighOrderESS.Rd | 2 man/valueInCompiledNimbleFunction.Rd | 2 man/values.Rd | 2 src/nimble.cpp | 56 - 149 files changed, 1788 insertions(+), 2710 deletions(-)
Title: Color Space Manipulation
Description: Carries out mapping between assorted color spaces including
RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV),
CIELAB and polar CIELAB. Qualitative, sequential, and
diverging color palettes based on HCL colors are provided.
Author: Ross Ihaka [aut],
Paul Murrell [aut],
Kurt Hornik [aut],
Jason C. Fisher [aut],
Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between colorspace versions 1.2-6 dated 2015-03-10 and 1.2-7 dated 2016-10-11
DESCRIPTION | 15 ++++++++------- LICENSE | 2 +- MD5 | 31 ++++++++++++++++--------------- NAMESPACE | 5 ++++- NEWS | 10 ++++++++++ R/choose_palette.R | 26 ++++++++++++++------------ R/colorspace.R | 2 +- build/partial.rdb |only build/vignette.rds |binary data/USSouthPolygon.rda |binary inst/CITATION | 28 +++++++++++++++++++++++++--- inst/doc/hcl-colors.pdf |binary man/USSouthPolygon.Rd | 2 +- man/choose_palette.Rd | 16 +++++++++++----- man/desaturate.Rd | 2 +- man/rainbow_hcl.Rd | 18 +++++++++++------- vignettes/hcl-colors.Rout.save | 4 +--- 17 files changed, 104 insertions(+), 57 deletions(-)
Title: Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models with both continuous and discrete variables.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>
Diff between BDgraph versions 2.28 dated 2016-10-03 and 2.29 dated 2016-10-11
BDgraph-2.28/BDgraph/src/Ig.cpp |only BDgraph-2.28/BDgraph/src/gcgm_bd_multi_update.cpp |only BDgraph-2.28/BDgraph/src/gcgm_rj.cpp |only BDgraph-2.28/BDgraph/src/ggm_bd_multi_update.cpp |only BDgraph-2.28/BDgraph/src/ggm_rj.cpp |only BDgraph-2.28/BDgraph/src/rgcwish.cpp |only BDgraph-2.28/BDgraph/src/rgcwish.h |only BDgraph-2.28/BDgraph/src/scaleFree.cpp |only BDgraph-2.29/BDgraph/DESCRIPTION | 8 BDgraph-2.29/BDgraph/MD5 | 49 -- BDgraph-2.29/BDgraph/R/bdgraph.sim.R | 4 BDgraph-2.29/BDgraph/man/bdgraph.Rd | 4 BDgraph-2.29/BDgraph/man/bdgraph.sim.Rd | 4 BDgraph-2.29/BDgraph/man/bdgraph.ts.Rd | 2 BDgraph-2.29/BDgraph/man/compare.Rd | 6 BDgraph-2.29/BDgraph/man/gnorm.Rd | 4 BDgraph-2.29/BDgraph/man/plotroc.Rd | 6 BDgraph-2.29/BDgraph/man/rgwish.Rd | 2 BDgraph-2.29/BDgraph/man/rwish.Rd | 2 BDgraph-2.29/BDgraph/man/summary.bdgraph.Rd | 4 BDgraph-2.29/BDgraph/src/MyLapack.cpp | 123 ++--- BDgraph-2.29/BDgraph/src/MyLapack.h | 34 - BDgraph-2.29/BDgraph/src/bd_for_ts.cpp | 513 +++++++++++++++++++++- BDgraph-2.29/BDgraph/src/gcgm_bd.cpp | 479 ++++++++++++++++++++ BDgraph-2.29/BDgraph/src/ggm_bd.cpp | 458 +++++++++++++++++++ BDgraph-2.29/BDgraph/src/gm_rj.cpp |only BDgraph-2.29/BDgraph/src/matrix.cpp | 40 + BDgraph-2.29/BDgraph/src/matrix.h | 2 BDgraph-2.29/BDgraph/src/rgwish.cpp | 102 ++++ BDgraph-2.29/BDgraph/src/rgwish.h | 4 30 files changed, 1693 insertions(+), 157 deletions(-)
Title: Segregation Measures for Multitype Spatial Point Patterns
Description: Summaries for measuring segregation/mingling in multitype spatial
point patterns with graph based neighbourhood description. Included indices:
Mingling, Shannon, Simpson (also the non-spatial) Included functionals:
Mingling, Shannon, Simpson, ISAR, MCI. Included neighbourhoods: Geometric, k-
nearest neighbours, Gabriel, Delaunay. Dixon's test.
Author: Tuomas Rajala
Maintainer: Tuomas Rajala <tuomas.rajala@iki.fi>
Diff between spatialsegregation versions 2.42 dated 2016-10-10 and 2.43 dated 2016-10-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/Pp.cpp | 12 ++++++------ 3 files changed, 12 insertions(+), 12 deletions(-)
More information about spatialsegregation at CRAN
Permanent link
Title: Testing Workbench for Precision-Recall Curves
Description: A testing workbench for evaluating precision-recall curves under various conditions.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between prcbench versions 0.5.0 dated 2016-09-09 and 0.5.2 dated 2016-10-11
DESCRIPTION | 22 +++++++++++----------- MD5 | 10 +++++----- R/tool_zzz.R | 22 +++++++++++++++++++++- README.md | 30 ++++++++++++++++-------------- inst/doc/introduction.html | 28 ++++++++++++++-------------- tests/testthat/test_tool_pm.R | 4 ++++ 6 files changed, 71 insertions(+), 45 deletions(-)
Title: Multivariate Normal Mixture Models and Mixtures of Generalized
Linear Mixed Models Including Model Based Clustering
Description: Contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures. Additionally, model based clustering methods are implemented to perform classification based on (multivariate) longitudinal (or otherwise correlated) data. The basis for such clustering is a mixture of multivariate generalized linear mixed models.
Author: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Maintainer: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Diff between mixAK versions 4.2 dated 2015-08-02 and 4.4 dated 2016-10-11
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 6 ++++++ R/cbplot.R | 23 +++++++++++++---------- data/Acidity.rda |binary data/Enzyme.rda |binary data/Galaxy.rda |binary man/cbplot.Rd | 10 ++++++---- src/AK_LAPACK.h | 1 + src/Dist_MVT.cpp | 5 +++-- src/NMix_Utils.cpp | 3 ++- 11 files changed, 45 insertions(+), 31 deletions(-)
Title: Spatial Graph Based Clustering Summaries for Spatial Point
Patterns
Description: Graph based clustering summaries for spatial point patterns.
Includes Connectivity function, Cumulative connectivity function and clustering
function, plus the triangle/triplet intensity function T.
Author: Tuomas Rajala
Maintainer: Tuomas Rajala <tuomas.rajala@iki.fi>
Diff between SGCS versions 2.4 dated 2016-10-10 and 2.5 dated 2016-10-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/Pp.cpp | 20 ++++++++++---------- 3 files changed, 16 insertions(+), 16 deletions(-)
Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics)
curves.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.5.0 dated 2016-09-09 and 0.5.2 dated 2016-10-11
DESCRIPTION | 14 ++-- MD5 | 6 - README.md | 20 +++--- inst/doc/introduction.html | 136 ++++++++++++++++++++++----------------------- 4 files changed, 89 insertions(+), 87 deletions(-)
Title: Title: Learn Data Science Through the "Data Science Live Book"
Description: Around 10% of almost any predictive modeling project
is spent in predictive modeling, 'funModeling' and the book <http://
livebook.datascienceheroes.com/> are intended to cover remaining 90%: data
preparation, profiling, selecting best variables 'dataViz', assessing model
performance and other functions.
Author: Pablo Casas
Maintainer: Pablo Casas <pabloc@datascienceheroes.com>
Diff between funModeling versions 1.3 dated 2016-10-05 and 1.4 dated 2016-10-11
DESCRIPTION | 8 ++--- MD5 | 8 ++--- R/models_lib.R | 6 --- R/numbers.R | 88 +++++++++++++++++++++++++++++---------------------------- man/freq.Rd | 4 +- 5 files changed, 58 insertions(+), 56 deletions(-)
Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Description: Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
Author: Hadley Wickham [aut],
Yihui Xie [cre, ctb],
Michael Lawrence [ctb],
Thomas Kluyver [ctb],
Barret Schloerke [ctb],
Adam Ryczkowski [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between evaluate versions 0.9 dated 2016-04-29 and 0.10 dated 2016-10-11
DESCRIPTION | 14 ++++++---- MD5 | 16 ++++++------ NAMESPACE | 2 + NEWS | 14 ++++++++++ R/eval.r | 66 ++++++++++++++++++++++++++++++++++++++++++++++----- R/replay.r | 34 +++++++++++++++++++++++++- R/watcher.r | 27 +++++++++++++++++--- man/evaluate.Rd | 7 ++++- man/flush_console.Rd |only man/inject_funs.Rd |only 10 files changed, 155 insertions(+), 25 deletions(-)
Title: Compositional Data Analysis
Description: A collection of functions for compositional data analysis.
Author: Michail Tsagris [aut, cre], Giorgos Athineou [aut]
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Compositional versions 1.8 dated 2016-08-05 and 2.0 dated 2016-10-11
DESCRIPTION | 8 +- MD5 | 152 +++++++++++++++++++++---------------------- NAMESPACE | 8 +- R/alfa.R | 16 ++-- R/alfa.knn.R | 25 +++---- R/alfa.pcr.R | 2 R/alfa.profile.R | 8 +- R/alfa.reg.R | 23 +++--- R/alfa.tune.R | 8 +- R/alfainv.R | 10 +- R/alfaknn.tune.R | 148 ++++++++++++++++++++--------------------- R/alfapcr.tune.R | 8 +- R/alfarda.tune.R | 8 +- R/alfareg.tune.R | 48 +++++++------ R/alfaridge.tune.R | 6 - R/bic.mixcompnorm.R | 6 - R/bivt.contour.R | 28 +++---- R/comp.den.R | 6 - R/comp.kerncontour.R | 18 ++--- R/comp.knn.R | 79 +++++++++++----------- R/comp.reg.R | 10 +- R/compknn.tune.R | 85 ++++++++++++------------ R/ddiri.R | 4 - R/diri.contour.R | 28 +++---- R/diri.est.R | 18 ++--- R/diri.nr.R | 61 ++++------------- R/diri.reg.R | 28 +++---- R/diri.reg2.R | 30 ++++---- R/dirimean.test.R | 12 +-- R/eel.test1.R | 14 +-- R/eel.test2.R | 26 +++---- R/el.test1.R | 6 - R/el.test2.R | 12 +-- R/frechet.R | 12 +-- R/glm.pcr.R | 7 - R/glmpcr.tune.R | 18 ++--- R/helm.R | 2 R/hotel1T2.R | 12 +-- R/hotel2T2.R | 18 ++--- R/james.R | 25 +++---- R/js.compreg.R | 20 ++--- R/kl.compreg.R | 20 ++--- R/kl.diri.R | 2 R/maov.R | 8 +- R/maovjames.R | 14 +-- R/mix.compnorm.R | 16 ++-- R/mixnorm.contour.R | 12 +-- R/mkde.R | 6 - R/mkde.tune.R | 14 +-- R/multivreg.R | 13 +-- R/multivt.R | 6 - R/norm.contour.R | 19 ++--- R/ols.compreg.R | 25 +++---- R/pcr.R | 9 +- R/pcr.tune.R | 12 +-- R/rcompnorm.R | 4 - R/rcompsn.R | 4 - R/rcompt.R | 4 - R/rda.R | 18 ++--- R/rda.tune.R | 25 +++---- R/rdiri.R | 2 R/ridge.plot.R | 6 - R/ridge.reg.R | 5 - R/ridge.tune.R | 12 +-- R/rmixcomp.R | 4 - R/rmvnorm.R | 5 - R/skewnorm.contour.R | 20 ++--- R/spat.med.R | 16 ++-- R/spatmed.reg.R | 22 +++--- R/sscov.R | 6 - R/sym.test.R | 15 ++-- R/ternary.R | 18 ++--- man/Compositional-package.Rd | 4 - man/comp.knn.Rd | 2 man/diri.nr.Rd | 4 - man/rda.Rd | 2 man/spat.med.Rd | 4 - 77 files changed, 706 insertions(+), 735 deletions(-)
Title: Bootstrapped Robustness Assessment for Qualitative Comparative
Analysis
Description: Test the robustness of a user's Qualitative Comparative Analysis
solutions to randomness, using the bootstrapped assessment: baQCA(). This
package also includes a function that provides recommendations for improving
solutions to reach typical significance levels: brQCA().
Author: C. Ben Gibson [aut, cre],
Burrel Vann Jr [aut]
Maintainer: C. Ben Gibson <cbgibson@uci.edu>
Diff between braQCA versions 0.9.9.3 dated 2016-09-30 and 0.9.9.4 dated 2016-10-11
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Estimating Dynamic Heritability and Twin Model Comparison
Description: Twin models that are able to estimate the dynamic behaviour of the variance components in the classical twin models with respect to age using B-splines and P-splines.
Author: Liang He
Maintainer: Liang He <liang.he@duke.edu>
Diff between ACEt versions 1.6.9 dated 2016-09-10 and 1.7.0 dated 2016-10-11
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- R/AtCtEtp.R | 40 +++++++++++++++++++++++++++++++++------- R/mcmc_epsp.R | 9 +++++++++ man/ACEt-package.Rd | 6 +++--- man/AtCtEtp.Rd | 1 + src/AtCtEtp.cpp | 6 +++++- src/RInterface.cc | 8 ++++---- src/mcmc.cc | 33 +++++++++++++++++++++++++++++---- src/mcmc.h | 2 +- 10 files changed, 100 insertions(+), 35 deletions(-)