Title: Analyze System Scalability with the Universal Scalability Law
Description: The Universal Scalability Law is a model to predict hardware and
software scalability. It uses system capacity as a function of load to
forecast the scalability for the system.
Author: Neil J. Gunther [aut],
Stefan Moeding [aut, cre]
Maintainer: Stefan Moeding <stm@moeding.net>
Diff between usl versions 1.6.0 dated 2016-06-18 and 1.7.0 dated 2016-10-13
usl-1.6.0/usl/vignettes/usl-orausl2-1.pdf |only usl-1.7.0/usl/DESCRIPTION | 8 ++++---- usl-1.7.0/usl/MD5 | 25 ++++++++++++------------- usl-1.7.0/usl/NEWS | 6 ++++++ usl-1.7.0/usl/R/print.R | 4 +--- usl-1.7.0/usl/README.md | 10 ++++++---- usl-1.7.0/usl/inst/doc/usl.R | 2 +- usl-1.7.0/usl/inst/doc/usl.Rnw | 2 +- usl-1.7.0/usl/inst/doc/usl.pdf |binary usl-1.7.0/usl/tests/t03.Rout.save | 6 +++--- usl-1.7.0/usl/tests/t04.Rout.save | 14 ++++++++------ usl-1.7.0/usl/tests/t06.Rout.save | 14 ++++++++------ usl-1.7.0/usl/tests/t08.Rout.save | 14 ++++++++------ usl-1.7.0/usl/vignettes/usl.Rnw | 2 +- 14 files changed, 59 insertions(+), 48 deletions(-)
Title: Simple Network of Workstations
Description: Support for simple parallel computing in R.
Author: Luke Tierney, A. J. Rossini, Na Li, H. Sevcikova
Maintainer: Luke Tierney <luke-tierney@uiowa.edu>
Diff between snow versions 0.4-1 dated 2015-10-31 and 0.4-2 dated 2016-10-13
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/snow.R | 2 ++ 3 files changed, 7 insertions(+), 5 deletions(-)
Title: Fast Rolling Functions for Seismology using Rcpp
Description: Fast versions of seismic analysis functions that 'roll' over a
vector of values. See the RcppRoll package for alternative
versions of basic statistical functions such as rolling mean,
median, etc.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Mary Templeton [aut],
Gillian Sharer [aut, cre]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between seismicRoll versions 1.0.1 dated 2015-03-11 and 1.1.2 dated 2016-10-13
DESCRIPTION | 27 +++++++------- MD5 | 30 +++++++-------- NAMESPACE | 2 - R/RcppExports.R | 2 - R/findOutliers.R | 71 +++++++++++++++++++++++------------- R/seismicRoll.R | 17 ++++++++ man/findOutliers.Rd | 48 +++++++++++------------- man/roll_hampel.Rd | 6 +-- man/roll_mean.Rd | 6 +-- man/roll_median.Rd | 4 +- man/roll_sd.Rd | 6 +-- man/roll_stalta.Rd | 24 ++++++------ man/seismicRoll.Rd | 19 +++++++++ src/Makevars.win | 2 - src/RcppExports.cpp | 98 ++++++++++++++++++++------------------------------- src/source_files.cpp | 2 - 16 files changed, 200 insertions(+), 164 deletions(-)
Title: Quality Report Generation for MaxQuant Results
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (see <http://www.maxquant.org>).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.
Author: Chris Bielow <chris.bielow@mdc-berlin.de>
Maintainer: Chris Bielow <chris.bielow@mdc-berlin.de>
Diff between PTXQC versions 0.80.13 dated 2016-10-11 and 0.80.14 dated 2016-10-13
DESCRIPTION | 10 +-- MD5 | 24 +++---- NAMESPACE | 1 NEWS | 3 R/fcn_computeQC.R | 85 +++++----------------------- README.md | 2 inst/doc/PTXQC-Basic_Guide_for_R_users.html | 54 ++++++++--------- inst/doc/PTXQC-CustomizeReport.html | 4 - inst/doc/PTXQC-DragNDrop.html | 4 - inst/doc/PTXQC-FAQ.html | 4 - inst/doc/PTXQC-Input_And_Output_Data.html | 4 - inst/dragNdrop/README.md | 2 tests/testthat/test_computeQC.R | 4 - 13 files changed, 78 insertions(+), 123 deletions(-)
Title: Into the extRemes Package
Description: Graphical User Interface (GUI) to some of the functions in the package extRemes version >= 2.0 are included.
Author: Eric Gilleland
Maintainer: Eric Gilleland <ericg@ucar.edu>
Diff between in2extRemes versions 1.0-2 dated 2015-07-24 and 1.0-3 dated 2016-10-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/evdfit.gui.R | 2 +- inst/CITATION | 27 ++++++++++++--------------- 4 files changed, 20 insertions(+), 23 deletions(-)
Title: Two-Sample Tests for High-Dimensional Mean Vectors
Description: Provides various tests for comparing high-dimensional mean vectors in two sample populations.
Author: Lifeng Lin and Wei Pan
Maintainer: Lifeng Lin <linl@umn.edu>
Diff between highmean versions 2.0 dated 2016-02-27 and 3.0 dated 2016-10-13
DESCRIPTION | 8 ++++---- MD5 | 44 +++++++++++++++++++++++--------------------- NAMESPACE | 4 ++-- R/cpval_aSPU.R |only R/epval_Bai1996.R | 11 +++++++---- R/epval_Cai2014.R | 11 +++++++---- R/epval_Chen2010.R | 11 +++++++---- R/epval_Chen2014.R | 11 +++++++---- R/epval_Sri2008.R | 11 +++++++---- R/epval_aSPU.R | 11 +++++++---- man/apval_Bai1996.Rd | 5 ++++- man/apval_Cai2014.Rd | 5 ++++- man/apval_Chen2010.Rd | 5 ++++- man/apval_Chen2014.Rd | 3 +++ man/apval_Sri2008.Rd | 5 ++++- man/apval_aSPU.Rd | 13 ++++++++----- man/cpval_aSPU.Rd |only man/epval_Bai1996.Rd | 5 ++++- man/epval_Cai2014.Rd | 7 +++++-- man/epval_Chen2010.Rd | 7 +++++-- man/epval_Chen2014.Rd | 5 ++++- man/epval_Sri2008.Rd | 5 ++++- man/epval_aSPU.Rd | 9 ++++++--- man/highmean-package.Rd | 14 +++++++------- 24 files changed, 133 insertions(+), 77 deletions(-)
Title: Automated Spectral Deconvolution, Alignment, and Metabolite
Identification in GC/MS-Based Untargeted Metabolomics
Description: Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics. Outputs a table with compound names, matching scores and the integrated area of the compound for each sample.
Author: Xavier Domingo-Almenara, Sara Samino, Maria Vinaixa, Alexandre Perera, Oscar Yanes
Maintainer: Xavier Domingo-Almenara <xavier.domingo@urv.cat>
Diff between erah versions 1.0.2 dated 2016-09-02 and 1.0.3 dated 2016-10-13
DESCRIPTION | 10 ++++---- MD5 | 12 +++++----- NEWS | 11 +++++++-- R/erah.R | 2 - R/file.R | 55 +++++++++++++++++++++++++++++++----------------- R/missingCompRecovery.R | 7 +++--- inst/doc/eRahManual.pdf |binary 7 files changed, 61 insertions(+), 36 deletions(-)
Title: Conditioned Latin Hypercube Sampling
Description: Conditioned Latin hypercube sampling, as published by Minasny and McBratney (2006) <DOI:10.1016/j.cageo.2005.12.009>. This method proposes to stratify sampling in presence of ancillary data. An extension of this method, which propose to associate a cost to each individual and take it into account during the optimisation process, is also proposed (Roudier et al., 2012, <DOI:10.1201/b12728-46>).
Author: Pierre Roudier
Maintainer: Pierre Roudier <roudierp@landcareresearch.co.nz>
Diff between clhs versions 0.5-5 dated 2015-12-18 and 0.5-6 dated 2016-10-13
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- NEWS | 4 ++++ R/clhs-raster.R | 12 +++++------- README.md |only inst/doc/vignette.pdf |binary 6 files changed, 19 insertions(+), 16 deletions(-)
Title: Biological Sequences Retrieval and Analysis
Description: Exploratory data analysis and data visualization
for biological sequence (DNA and protein) data. Includes also
utilities for sequence data management under the ACNUC system.
Author: Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]
Maintainer: Simon Penel <simon.penel@univ-lyon1.fr>
Diff between seqinr versions 3.3-2 dated 2016-10-07 and 3.3-3 dated 2016-10-13
DESCRIPTION | 15 ++++++++------- MD5 | 8 ++++++-- data/gcO2.rda |only data/gcT.rda |only inst/CITATION | 2 +- man/gcO2.Rd |only man/gcT.Rd |only 7 files changed, 15 insertions(+), 10 deletions(-)
Title: A Collection of Methods for Singular Spectrum Analysis
Description: Methods and tools for Singular Spectrum Analysis including decomposition, forecasting and gap-filling for univariate and multivariate time series.
Author: Anton Korobeynikov, Alex Shlemov, Konstantin Usevich, Nina Golyandina
Maintainer: Anton Korobeynikov <anton@korobeynikov.info>
Diff between Rssa versions 0.13-1 dated 2015-09-28 and 0.14 dated 2016-10-13
DESCRIPTION | 12 MD5 | 93 +++---- NAMESPACE | 44 --- R/autossa.R | 7 R/cadzow.R | 2 R/capabilities.R |only R/chankel.R | 201 ++++----------- R/common.R | 14 - R/forecast.R | 21 - R/gapfill.R | 31 +- R/hankel.R | 233 +++++++----------- R/hbhankel.R | 237 +++++++----------- R/igapfill.R | 8 R/init.R.in | 1 R/mhankel.R | 163 ++++-------- R/ossa.R | 206 ++++++++++++---- R/plot.R | 8 R/plotn.R | 9 R/pssa.R | 296 +++++++++------------- R/ssa.R | 324 +++++++------------------ R/toeplitz.R | 212 ++++------------ R/wossa.R |only man/Barbara.rd | 2 man/Rssa-package.Rd | 17 - man/cadzow.Rd | 35 ++ man/calcv.Rd | 18 - man/clplot.Rd | 1 man/decompose.Rd | 13 - man/fossa.Rd | 81 +++++- man/gapfill.Rd | 17 - man/hankel.Rd | 6 man/igapfill.Rd | 4 man/iossa.Rd | 12 man/iossa.result.Rd | 5 man/lrr.Rd | 6 man/owcor.Rd | 5 man/parest.Rd | 6 man/plot.Rd | 11 man/plot.reconstruct.Rd | 7 man/rforecast.Rd | 11 man/ssa.Rd | 56 +++- man/ssa.capabilities.Rd |only man/summarize.gaps.Rd | 7 man/toeplitz.Rd | 5 man/vforecast.Rd | 12 man/wcor.Rd | 19 - src/hankel.c | 205 --------------- src/hbhankel.c | 618 +++++++++++++++++++++++++++++++----------------- src/toeplitz.c | 84 ------ 49 files changed, 1542 insertions(+), 1843 deletions(-)
Title: IP Address Geolocation
Description: Connectors to online and offline sources for taking IP addresses
and geolocating them to country, city, timezone and other geographic ranges. For
individual connectors, see the package index.
Author: Oliver Keyes [aut, cre], Drew Schmidt [aut], David Robinson [ctb],
Chris Davis [ctb], Maxmind, Inc. [cph], Pascal Gloor [cph]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between rgeolocate versions 0.7.0 dated 2016-04-22 and 0.8.0 dated 2016-10-13
DESCRIPTION | 10 ++-- MD5 | 24 +++++------ NEWS | 6 ++ R/RcppExports.R | 2 R/ip_api.R | 8 +-- README.md | 6 +- build/vignette.rds |binary inst/doc/Introduction_to_rgeolocate.html | 11 ++--- man/ip_api.Rd | 4 - src/RcppExports.cpp | 34 +++++++-------- src/maxmind.cpp | 6 +- src/maxminddb.c | 66 +++++++++++++++---------------- src/maxminddb.h | 2 13 files changed, 92 insertions(+), 87 deletions(-)
Title: Build Dependency Graphs using Projection
Description: Implements a general framework for creating dependency graphs using projection. Both lasso and sparse additive model projections are implemented. Both Pearson correlation and distance covariance are used to generate the graph.
Author: Jianqing Fan, Yang Feng and Lucy Xia
Maintainer: Yang Feng <yang.feng@columbia.edu>
Diff between pgraph versions 0.6 dated 2016-06-14 and 0.8 dated 2016-10-13
DESCRIPTION | 10 +++--- MD5 | 26 ++++++++--------- NAMESPACE | 6 ++++ R/funs.R | 1 R/greg.R | 28 +++++++++++++++--- R/pgraph.R | 43 ++++++++++++++++++++++------ R/projcore.R | 84 +++++++++++++++++++++++++++++--------------------------- R/projcov.R | 57 ++++++++++++++++++++++---------------- R/roc.R | 30 -------------------- man/greg.Rd | 26 +++++++++++++++-- man/pgraph.Rd | 42 ++++++++++++++++++++++------ man/projcore.Rd | 34 +++++++++------------- man/projcov.Rd | 35 ++++++++++++++++++----- man/roc.Rd | 31 -------------------- 14 files changed, 259 insertions(+), 194 deletions(-)
Title: An Infra-Structure for Performance Estimation of Predictive
Models
Description: An infra-structure for estimating the predictive performance of
predictive models. In this context, it can also be used to compare and/or select
among different alternative ways of solving one or more predictive tasks. The
main goal of the package is to provide a generic infra-structure to estimate
the values of different metrics of predictive performance using different
estimation procedures. These estimation tasks can be applied to any solutions
(workflows) to the predictive tasks. The package provides easy to use standard
workflows that allow the usage of any available R modeling algorithm together
with some pre-defined data pre-processing steps and also prediction post-
processing methods. It also provides means for addressing issues related with
the statistical significance of the observed differences.
Author: Luis Torgo [aut, cre]
Maintainer: Luis Torgo <ltorgo@dcc.fc.up.pt>
Diff between performanceEstimation versions 1.0.2 dated 2015-09-07 and 1.1.0 dated 2016-10-13
CHANGES | 23 ++ DESCRIPTION | 32 +- MD5 | 44 ++- NAMESPACE | 1 R/classDefs.R | 16 - R/evaluationMetrics.R | 70 +++--- R/experiments.R | 399 ++++++++++++++++++------------------ R/methods.R | 11 R/resultsAnalysis.R | 17 - R/resultsManipulation.R | 30 ++ R/smote.R | 16 - R/workflows.R | 60 +++-- inst/doc/performanceEstimation.R |only inst/doc/performanceEstimation.Rmd |only inst/doc/performanceEstimation.html |only man/EstimationTask-class.Rd | 51 ++-- man/classificationMetrics.Rd | 57 +++-- man/mcEstimates.Rd | 4 man/rankWorkflows.Rd | 13 - man/regressionMetrics.Rd | 8 man/results2table.Rd |only man/standardPRE.Rd | 4 man/standardWF.Rd | 24 ++ man/topPerformer.Rd | 10 man/topPerformers.Rd | 10 25 files changed, 536 insertions(+), 364 deletions(-)
More information about performanceEstimation at CRAN
Permanent link
Title: Time Series Missing Value Imputation
Description: Imputation (replacement) of missing values in univariate time
series.
Author: Steffen Moritz
Maintainer: Steffen Moritz <steffen.moritz10@gmail.com>
Diff between imputeTS versions 1.6 dated 2016-06-03 and 1.7 dated 2016-10-13
imputeTS-1.6/imputeTS/R/int.preCheck.R |only imputeTS-1.7/imputeTS/DESCRIPTION | 11 imputeTS-1.7/imputeTS/MD5 | 119 +++-- imputeTS-1.7/imputeTS/NAMESPACE | 54 +- imputeTS-1.7/imputeTS/NEWS | 235 ++++++----- imputeTS-1.7/imputeTS/R/imputeTS-package.R | 56 +- imputeTS-1.7/imputeTS/R/int.algoInterface.R | 85 ++-- imputeTS-1.7/imputeTS/R/na.interpolation.R | 201 +++++---- imputeTS-1.7/imputeTS/R/na.kalman.R | 315 ++++++++------ imputeTS-1.7/imputeTS/R/na.locf.R | 267 ++++++------ imputeTS-1.7/imputeTS/R/na.ma.R | 304 +++++++------- imputeTS-1.7/imputeTS/R/na.mean.R | 184 ++++---- imputeTS-1.7/imputeTS/R/na.random.R | 161 ++++--- imputeTS-1.7/imputeTS/R/na.remove.R | 130 +++--- imputeTS-1.7/imputeTS/R/na.replace.R | 129 +++--- imputeTS-1.7/imputeTS/R/na.seadec.R | 189 ++++---- imputeTS-1.7/imputeTS/R/na.seasplit.R | 185 ++++---- imputeTS-1.7/imputeTS/R/plotNA.distribution.R | 141 +++--- imputeTS-1.7/imputeTS/R/plotNA.distributionBar.R | 301 +++++++------- imputeTS-1.7/imputeTS/R/plotNA.gapsize.R | 270 ++++++------ imputeTS-1.7/imputeTS/R/plotNA.imputations.R | 240 ++++++----- imputeTS-1.7/imputeTS/R/statsNA.R | 421 ++++++++++---------- imputeTS-1.7/imputeTS/R/tsAirgap.R | 64 +-- imputeTS-1.7/imputeTS/R/tsAirgapComplete.R | 62 +- imputeTS-1.7/imputeTS/README.md | 281 ++++++------- imputeTS-1.7/imputeTS/data/tsHeating.rda |binary imputeTS-1.7/imputeTS/data/tsHeatingComplete.rda |binary imputeTS-1.7/imputeTS/data/tsNH4.rda |binary imputeTS-1.7/imputeTS/data/tsNH4Complete.rda |binary imputeTS-1.7/imputeTS/inst/CITATION | 23 - imputeTS-1.7/imputeTS/man/imputeTS-package.Rd | 64 +-- imputeTS-1.7/imputeTS/man/na.interpolation.Rd | 112 ++--- imputeTS-1.7/imputeTS/man/na.kalman.Rd | 163 +++---- imputeTS-1.7/imputeTS/man/na.locf.Rd | 134 +++--- imputeTS-1.7/imputeTS/man/na.ma.Rd | 151 +++---- imputeTS-1.7/imputeTS/man/na.mean.Rd | 103 ++-- imputeTS-1.7/imputeTS/man/na.random.Rd | 98 ++-- imputeTS-1.7/imputeTS/man/na.remove.Rd | 93 ++-- imputeTS-1.7/imputeTS/man/na.replace.Rd | 82 +-- imputeTS-1.7/imputeTS/man/na.seadec.Rd | 101 ++-- imputeTS-1.7/imputeTS/man/na.seasplit.Rd | 105 ++-- imputeTS-1.7/imputeTS/man/plotNA.distribution.Rd | 113 ++--- imputeTS-1.7/imputeTS/man/plotNA.distributionBar.Rd | 133 +++--- imputeTS-1.7/imputeTS/man/plotNA.gapsize.Rd | 136 +++--- imputeTS-1.7/imputeTS/man/plotNA.imputations.Rd | 151 +++---- imputeTS-1.7/imputeTS/man/statsNA.Rd | 118 ++--- imputeTS-1.7/imputeTS/man/tsAirgap.Rd | 86 ++-- imputeTS-1.7/imputeTS/man/tsAirgapComplete.Rd | 86 ++-- imputeTS-1.7/imputeTS/man/tsHeating.Rd | 84 +-- imputeTS-1.7/imputeTS/man/tsHeatingComplete.Rd | 84 +-- imputeTS-1.7/imputeTS/man/tsNH4.Rd | 78 +-- imputeTS-1.7/imputeTS/man/tsNH4Complete.Rd | 78 +-- imputeTS-1.7/imputeTS/tests |only 53 files changed, 3558 insertions(+), 3223 deletions(-)
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors in GLMs of Li and Clyde (2015)
<http://arxiv.org/abs/1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient hash table.
Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049>.
This material is based upon work supported by the National Science
Foundation under Grant DMS-1106891. Any opinions, findings, and
conclusions or recommendations expressed in this material are those of
the author(s) and do not necessarily reflect the views of the
National Science Foundation.
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Diff between BAS versions 1.4.1 dated 2016-09-20 and 1.4.2 dated 2016-10-13
BAS-1.4.1/BAS/src/igam.c |only BAS-1.4.1/BAS/src/incompleteGamma.c |only BAS-1.4.2/BAS/DESCRIPTION | 11 +-- BAS-1.4.2/BAS/MD5 | 40 ++++++-------- BAS-1.4.2/BAS/NEWS.md | 9 +++ BAS-1.4.2/BAS/R/bas.gglm.R | 25 ++++++-- BAS-1.4.2/BAS/demo/BAS.hald.R | 4 + BAS-1.4.2/BAS/inst/doc/BAS-vignette.R | 4 + BAS-1.4.2/BAS/inst/doc/BAS-vignette.Rmd | 8 ++ BAS-1.4.2/BAS/inst/doc/BAS-vignette.html | 52 +++++++++--------- BAS-1.4.2/BAS/man/bas.glm.Rd | 12 +++- BAS-1.4.2/BAS/man/bayesglm.Rd | 2 BAS-1.4.2/BAS/src/ZS.approx.full.np.c | 4 - BAS-1.4.2/BAS/src/ZS.approx.null.np.c | 4 - BAS-1.4.2/BAS/src/betapriorfamily.c | 88 ++++++++++++++++++++++++++----- BAS-1.4.2/BAS/src/betapriorfamily.h | 1 BAS-1.4.2/BAS/src/cch.c | 4 - BAS-1.4.2/BAS/src/gamma.c | 6 +- BAS-1.4.2/BAS/src/hyp2f1.c | 44 ++++++++++----- BAS-1.4.2/BAS/src/hyperg.c | 14 ++-- BAS-1.4.2/BAS/src/hypergeometric1F1.c | 7 +- BAS-1.4.2/BAS/vignettes/BAS-vignette.Rmd | 8 ++ 22 files changed, 238 insertions(+), 109 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression (if R package 'metafor' is installed);
- generalised linear mixed models (if R packages 'metafor', 'lme4', 'numDeriv', and 'BiasedUrn' are installed).
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.5-0 dated 2016-08-17 and 4.6-0 dated 2016-10-13
DESCRIPTION | 9 +- MD5 | 93 ++++++++++++----------- NAMESPACE | 4 - NEWS | 98 +++++++++++++++++++++++++ R/asin2ir.R |only R/asin2p.R | 10 +- R/backtransf.R | 26 +++++- R/catmeth.R | 29 +++++-- R/forest.meta.R | 187 +++++++++++++++++++++++++++++++++++++++--------- R/funnel.default.R | 4 - R/funnel.meta.R | 5 - R/is.relative.effect.R | 2 R/meta-internal.R | 7 + R/metabias.meta.R | 14 +++ R/metacont.R | 51 ++++++++----- R/metacum.R | 58 +++++++++++--- R/metagen.R | 9 ++ R/metainf.R | 58 +++++++++++--- R/metaprop.R | 16 ++-- R/metarate.R |only R/metareg.R | 7 + R/print.meta.R | 63 +++++++++++++--- R/print.summary.meta.R | 114 ++++++++++++++++++----------- R/setchar.R | 2 R/settings.meta.R | 14 +++ R/subgroup.R | 56 ++++++++++---- R/summary.meta.R | 46 ++++++++++- R/trimfill.default.R | 10 ++ R/trimfill.meta.R | 12 ++- R/update.meta.R | 59 +++++++++++++-- R/xlab.R | 42 +++++++++- data/woodyplants.txt.gz |only inst/CITATION |only man/forest.Rd | 18 ++++ man/funnel.Rd | 16 ++-- man/meta-package.Rd |only man/metabias.Rd | 20 +++-- man/metabin.Rd | 15 +-- man/metacont.Rd | 70 ++++++++++++++--- man/metacor.Rd | 9 +- man/metacr.Rd | 4 - man/metagen.Rd | 26 ++++-- man/metainc.Rd | 9 +- man/metainf.Rd | 4 - man/metaprop.Rd | 21 ++--- man/metarate.Rd |only man/print.meta.Rd | 16 +++- man/settings.meta.Rd | 3 man/trimfill.Rd | 15 ++- man/update.meta.Rd | 7 + man/woodyplants.Rd |only 51 files changed, 1036 insertions(+), 322 deletions(-)