Title: Deployment Interface for R Markdown Documents and Shiny
Applications
Description: Programmatic deployment interface for 'RPubs', 'shinyapps.io', and
'RStudio Connect'. Supported content types include R Markdown documents,
Shiny applications, plots, and static web content.
Author: JJ Allaire
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between rsconnect versions 0.4.3 dated 2016-05-03 and 0.5 dated 2016-10-16
DESCRIPTION | 12 ++-- MD5 | 35 ++++++----- NAMESPACE | 2 R/applications.R | 2 R/bundle.R | 123 ++++++++++++++++++++++++++++++++++++------ R/configureApp.R | 6 +- R/connect.R | 9 ++- R/deployApp.R | 52 +++++++++++------ R/deployDoc.R | 29 ++++++--- R/deployments.R | 35 +++++++++-- R/lucid.R | 7 +- R/onLoad.R |only R/rpubs.R | 4 - R/title.R |only man/deployApp.Rd | 13 +++- man/generateAppName.Rd |only man/listBundleFiles.Rd |only man/options.Rd | 2 tests/testthat/test-bundle.R | 9 +++ tests/testthat/test-connect.R | 1 tests/testthat/test-title.R |only 21 files changed, 256 insertions(+), 85 deletions(-)
Title: Hyperparameter Search for Gradient Boosted Trees
Description: An implementation of hyperparameter optimization for Gradient
Boosted Trees on binary classification and regression problems. The current
version provides two optimization methods: Bayesian optimization and random
search.
Author: Waley W. J. Liang
Maintainer: Waley W. J. Liang <wliang10@gmail.com>
Diff between gbts versions 1.0.0 dated 2016-10-08 and 1.0.1 dated 2016-10-16
DESCRIPTION | 13 +++++----- MD5 | 11 ++++---- NEWS.md |only R/gbt.R | 14 ++++++++++- R/gbts.R | 76 +++++++++++++++++++++++++++++++++--------------------------- README.md | 2 - man/gbts.Rd | 66 +++++++++++++++++++++++++++++----------------------- 7 files changed, 106 insertions(+), 76 deletions(-)
Title: Vectorised Tools for URL Handling and Parsing
Description: A toolkit for all URL-handling needs, including encoding and decoding,
parsing, parameter extraction and modification. All functions are
designed to be both fast and entirely vectorised. It is intended to be
useful for people dealing with web-related datasets, such as server-side
logs, although may be useful for other situations involving large sets of
URLs.
Author: Oliver Keyes [aut, cre], Jay Jacobs [aut, cre], Drew Schmidt [aut],
Mark Greenaway [ctb], Bob Rudis [ctb], Alex Pinto [ctb], Maryam Khezrzadeh [ctb],
Adam M. Costello [cph], Jeff Bezanson [cph]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between urltools versions 1.5.1 dated 2016-08-31 and 1.6.0 dated 2016-10-16
DESCRIPTION | 17 ++-- MD5 | 62 +++++++++-------- NAMESPACE | 2 NEWS | 16 ++++ R/RcppExports.R | 45 +++++++++++- R/accessors.R | 3 R/suffix.R | 13 ++- R/urltools.R | 2 R/zzz.R | 15 ++-- inst/doc/urltools.Rmd | 3 inst/doc/urltools.html | 7 + man/encoder.Rd | 4 - man/param_remove.Rd | 2 man/param_set.Rd | 4 - man/puny.Rd |only man/scheme.Rd | 3 man/urltools.Rd | 2 src/RcppExports.cpp | 142 ++++++++++++++++++++++----------------- src/compose.cpp | 14 +-- src/param.cpp | 10 +- src/parameter.cpp | 100 ++++++++++++++++++--------- src/parameter.h | 13 +-- src/parsing.cpp | 39 ++++++++-- src/puny.cpp |only src/punycode.c |only src/punycode.h |only src/urltools.cpp | 4 - src/utf8.c |only src/utf8.h |only tests/testthat/test_get_set.R | 22 ++++++ tests/testthat/test_memory.R |only tests/testthat/test_parameters.R | 14 +++ tests/testthat/test_parsing.R | 2 tests/testthat/test_puny.R |only tests/testthat/test_suffixes.R | 25 ++++++ vignettes/urltools.Rmd | 3 36 files changed, 411 insertions(+), 177 deletions(-)
Title: Species Distribution Modelling
Description: An extensible R framework for developing species distribution
models using individual and community-based approaches, generate ensembles of
models, evaluate the models, and predict species potential distributions in
space and time.
Author: Babak Naimi, Miguel B. Araujo
Maintainer: Babak Naimi <naimi.b@gmail.com>
Diff between sdm versions 1.0-25 dated 2016-07-15 and 1.0-28 dated 2016-10-16
DESCRIPTION | 16 +++++++------- MD5 | 19 ++++++++++------ NAMESPACE | 2 - R/ensemble.R |only R/evaluates.R | 40 ++++++++++++++++++++++------------- R/sdm.R | 6 ++--- R/sdmFormula.R | 38 ++++++++++++++++++++++++++++++++- R/show.R | 30 +++++++++++++++++++------- inst/CITATION |only inst/doc/quick_sdm.html | 54 ++++++++++++++++++++++++------------------------ inst/test |only man/ensemble.Rd |only 12 files changed, 134 insertions(+), 71 deletions(-)
Title: 3D Reconstruction of Archaeological Excavations
Description: A toolset for 3D reconstruction and analysis of excavations. It provides methods to reconstruct natural and artificial surfaces based on field measurements. This allows to spatially contextualize documented subunits and features. Intended to be part of a 3D visualization workflow.
Author: Clemens Schmid [cre, cph, aut]
Maintainer: Clemens Schmid <clemens@nevrome.de>
Diff between recexcavAAR versions 0.2.1 dated 2016-09-19 and 0.2.2 dated 2016-10-16
DESCRIPTION | 17 +- MD5 | 28 ++-- NEWS.md | 7 + README.md | 13 -- inst/doc/recexcavAAR-vignette-1.R | 146 ++++++++++++---------- inst/doc/recexcavAAR-vignette-1.Rmd | 158 +++++++++++++----------- inst/doc/recexcavAAR-vignette-1.html | 188 ++++++++++++++++------------- inst/doc/recexcavAAR-vignette-2.R | 191 +++++++++++++---------------- inst/doc/recexcavAAR-vignette-2.Rmd | 199 +++++++++++++------------------ inst/doc/recexcavAAR-vignette-2.html | 223 +++++++++++++++-------------------- src/fillhexa.cpp | 4 src/spitcenter.cpp | 2 tests/testthat/test_fillhexa.R | 4 vignettes/recexcavAAR-vignette-1.Rmd | 158 +++++++++++++----------- vignettes/recexcavAAR-vignette-2.Rmd | 199 +++++++++++++------------------ 15 files changed, 744 insertions(+), 793 deletions(-)
Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: It provides functions for both likelihood-based
and Bayesian analysis of spatially referenced prevalence data, and is
also an extension of the 'geoR' package.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi <e.giorgi@lancaster.ac.uk>
Diff between PrevMap versions 1.3.2 dated 2015-12-05 and 1.4 dated 2016-10-16
DESCRIPTION | 17 MD5 | 74 NAMESPACE | 56 R/foo.R | 9119 +++++++++++++++++++++++++------------ R/galicia.R |only R/galicia.boundary.R |only build |only data/galicia.boundary.rdata |only data/galicia.rdata |only inst |only man/Laplace.sampling.Rd | 10 man/Laplace.sampling.SPDE.Rd |only man/Laplace.sampling.lr.Rd | 4 man/adjust.sigma2.Rd | 2 man/binary.probit.Bayes.Rd | 6 man/binomial.logistic.Bayes.Rd | 22 man/binomial.logistic.MCML.Rd | 51 man/coef.PrevMap.ps.Rd |only man/continuous.sample.Rd | 4 man/control.mcmc.Bayes.SPDE.Rd |only man/control.mcmc.MCML.Rd | 5 man/discrete.sample.Rd | 8 man/galicia.Rd |only man/galicia.boundary.Rd |only man/linear.model.Bayes.Rd | 8 man/linear.model.MLE.Rd | 21 man/lm.ps.MCML.Rd |only man/matern.kernel.Rd | 4 man/plot.pred.PrevMap.ps.Rd |only man/poisson.log.MCML.Rd | 12 man/set.par.ps.Rd |only man/spatial.pred.binomial.Bayes.Rd | 2 man/spatial.pred.binomial.MCML.Rd | 2 man/spatial.pred.linear.Bayes.Rd | 2 man/spatial.pred.linear.MLE.Rd | 2 man/spatial.pred.lm.ps.Rd |only man/spatial.pred.poisson.MCML.Rd | 2 man/summary.PrevMap.Rd | 4 man/summary.PrevMap.ps.Rd |only vignettes |only 40 files changed, 6519 insertions(+), 2918 deletions(-)
Title: Parametric Linkage Analysis in R
Description: Parametric linkage analysis and other likelihood-based pedigree analyses based on the Elston-Stewart algorithm, including singlepoint LOD scores, power analysis and computation of marker genotype distributions. Multipoint analysis is provided through a convenient MERLIN wrapper. Includes many utility functions for creating, manipulating and plotting pedigrees, markers and linkage results.
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland <magnusdv@studmed.uio.no>
Diff between paramlink versions 0.9-8 dated 2016-04-27 and 0.9-9 dated 2016-10-16
DESCRIPTION | 13 +- MD5 | 26 ++--- NAMESPACE | 1 NEWS | 18 +++ R/as.matrix.linkdat.R | 4 R/createPedigree.R | 216 ++++++++++++++++++++++++++++++++++++++++------- R/linkdat.R | 6 - R/utils.R | 28 +++++- man/as.matrix.linkdat.Rd | 5 - man/createPedigree.Rd | 97 +++++++++++++++------ man/inbreeding.Rd | 18 ++- man/linkdat.Rd | 5 - man/linkdat.utils.Rd | 28 ++---- man/mergePed.Rd | 5 - 14 files changed, 362 insertions(+), 108 deletions(-)
Title: Fused Lasso Approach in Regression Coefficient Clustering
Description: Fused lasso method to cluster and estimate regression coefficients
of the same covariate across different data sets when a large number of
independent data sets are combined. Package supports Gaussian, binomial,
Poisson and Cox PH models.
Author: Lu Tang, Ling Zhou, Peter X.K. Song
Maintainer: Lu Tang <lutang@umich.edu>
Diff between metafuse versions 1.0-1 dated 2015-11-07 and 2.0-1 dated 2016-10-16
metafuse-1.0-1/metafuse/R/metafuse.R |only metafuse-2.0-1/metafuse/DESCRIPTION | 18 +++-- metafuse-2.0-1/metafuse/MD5 | 16 ++--- metafuse-2.0-1/metafuse/NAMESPACE | 8 +- metafuse-2.0-1/metafuse/R/metafuse_functions.R |only metafuse-2.0-1/metafuse/build/partial.rdb |binary metafuse-2.0-1/metafuse/man/datagenerator.Rd | 45 ++++++++------ metafuse-2.0-1/metafuse/man/metafuse-package.Rd | 50 +++++++--------- metafuse-2.0-1/metafuse/man/metafuse.Rd | 74 ++++++++++++------------ metafuse-2.0-1/metafuse/man/metafuse.l.Rd | 62 ++++++++++---------- 10 files changed, 143 insertions(+), 130 deletions(-)
Title: Currency Formatting and Conversion
Description: Reformat currency-based data as numeric values (or numeric values
as currency-based data) and convert between currencies.
Author: Oliver Keyes
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between lucr versions 0.1.1 dated 2015-10-28 and 0.2.0 dated 2016-10-16
DESCRIPTION | 12 ++++++---- MD5 | 34 +++++++++++++++--------------- NAMESPACE | 2 - NEWS.md | 2 - R/RcppExports.R | 2 - R/api.R | 3 ++ README.md | 5 ++-- man/conversion_rates.Rd | 2 - man/currency_convert.Rd | 2 - man/from_currency.Rd | 2 - man/historic_currency.Rd | 5 ++-- man/list_currencies.Rd | 2 - man/lucr.Rd | 2 - man/to_currency.Rd | 3 +- src/RcppExports.cpp | 36 +++++++++++++++---------------- src/format.h | 44 +++++++++++++++++++++++++++++++-------- src/rrency.cpp | 6 ++--- tests/testthat/test_conversion.R | 7 ++++++ 18 files changed, 106 insertions(+), 65 deletions(-)
Title: IBM in-Database Analytics for R
Description: Functionality required to efficiently use R with
IBM DB2(C) for Linux, Unix and Windows, IBM dashDB(C) as well as
DB2 for z/OS (C) in conjunction with IBM DB2 Analytics Accelerator (C).
Many basic and complex R operations are pushed down into the database,
which removes the main memory boundary of R and allows to make full
use of parallel processing in the underlying database.
Author: IBM Corporation
Maintainer: Alexander Eckert <inza@de.ibm.com>
Diff between ibmdbR versions 1.47.1 dated 2015-12-10 and 1.48.0 dated 2016-10-16
DESCRIPTION | 19 MD5 | 122 ++-- NAMESPACE | 21 NEWS.md |only R/AllClass.R | 52 +- R/aggregate.R | 182 +++---- R/close.R | 45 - R/coldef.R | 730 ++++++++++++++-------------- R/connect.R | 62 +- R/connection.R | 369 +++++++++----- R/data.frame.R | 690 +++++++++++++-------------- R/data.frame.methods.R | 274 +++++----- R/divClust.R |only R/glm.R |only R/idadf.R | 38 - R/kMeans.R | 445 +++++++++-------- R/list.R | 458 +++++++++--------- R/lm.R | 1058 ++++++++++++++++++++++------------------- R/merge.R | 302 +++++------ R/model.management.R | 214 +++++--- R/nb.R | 454 ++++++++++------- R/parse.formula.R | 270 ++++++---- R/plot.idaLm.R | 1002 +++++++++++++++++++-------------------- R/rules.R | 520 ++++++++++++-------- R/sample.R | 214 ++++---- R/save.R | 170 +++++- R/sql.R | 1068 +++++++++++++++++++++++++++--------------- R/statistics.R | 898 +++++++++++++++++------------------ R/tree.R | 864 +++++++++++++++++---------------- R/twoStep.R |only R/update.R | 52 +- build/vignette.rds |binary inst/doc/ibmdbR.Rnw | 4 inst/doc/ibmdbR.pdf |binary man/as.ida.data.frame.Rd | 125 ++-- man/createview.Rd | 105 ++-- man/ida.col.def.methods.Rd | 74 +- man/ida.data.frame.Rd | 220 ++++---- man/ida.data.frame.methods.Rd | 112 ++-- man/ida.list.Rd | 180 +++---- man/ida.list.methods.Rd | 72 +- man/idaArule.Rd | 180 +++---- man/idaConnect.Rd | 106 ++-- man/idaDivCluster.Rd |only man/idaDropModel.Rd | 84 +-- man/idaGetModelName.Rd | 86 +-- man/idaGlm.Rd |only man/idaKMeans.Rd | 222 ++++---- man/idaListAccelerators.Rd |only man/idaListModels.Rd | 102 ++-- man/idaLm.Rd | 311 ++++++------ man/idaMerge.Rd | 228 ++++---- man/idaNb.Rd | 173 +++--- man/idaQuery.Rd | 126 ++-- man/idaRetrieveModel.Rd | 96 +-- man/idaSample.Rd | 162 +++--- man/idaTable.Rd | 110 ++-- man/idaTree.Rd | 254 ++++----- man/idaTwoStep.Rd |only man/idadf.Rd | 148 ++--- man/idatools.Rd | 164 +++--- man/init.Rd | 104 ++-- man/overview.Rd | 82 +-- man/showtables.Rd | 91 +-- tests/main.R | 66 +- vignettes/ibmdbR.Rnw | 4 66 files changed, 7770 insertions(+), 6614 deletions(-)
Title: A Package for Graphical Modelling in R
Description: The 'gRbase' package provides general features
which are used by other graphical modelling packages, in particular
by the packages 'gRain', 'gRim' and 'gRc'.
'gRbase' contains several data sets relevant for use in connection with
graphical models. Almost all data sets used in the book Graphical
Models with R (2012) are contained in 'gRbase'.
'gRbase' implements several graph algorithms (based mainly on
representing graphs as adjacency matrices - either in the form
of a standard matrix or a sparse matrix). Some graph
algorithms are:
(i) maximum cardinality search (for marked and unmarked graphs).
(ii) moralize.
(iii) triangulate.
(iv) junction tree.
'gRbase' facilitates array operations,
'gRbase' implements functions for testing for conditional independence.
'gRbase' illustrates how hierarchical log-linear models may be
implemented and describes concept of graphical meta
data. These features, however, are not maintained anymore and
remains in 'gRbase' only because there exists a paper describing
these facilities: A Common Platform for Graphical Models in R:
The 'gRbase' Package, Journal of Statistical Software, Vol 14,
No 17, 2005.
NOTICE Proper functionality of 'gRbase' requires that the packages graph,
'Rgraphviz' and 'RBGL' are installed from 'bioconductor'; for
installation instructions please refer to the web page given below.
Author: Søren Højsgaard <sorenh@math.aau.dk>
Maintainer: Søren Højsgaard <sorenh@math.aau.dk>
Diff between gRbase versions 1.7-5 dated 2016-02-20 and 1.8-1 dated 2016-10-16
gRbase-1.7-5/gRbase/R/array-addon.R |only gRbase-1.7-5/gRbase/R/array-parray.R |only gRbase-1.7-5/gRbase/R/array-simulateArray.R |only gRbase-1.7-5/gRbase/R/array-table-operations.R |only gRbase-1.7-5/gRbase/R/arrayCombine.R |only gRbase-1.7-5/gRbase/R/c-arrayops.R |only gRbase-1.7-5/gRbase/R/c-combnPrimR.R |only gRbase-1.7-5/gRbase/R/c-setops.R |only gRbase-1.7-5/gRbase/R/c-utilities.R |only gRbase-1.7-5/gRbase/R/graph-algo-JunctionTree.R |only gRbase-1.7-5/gRbase/R/graph-algo-MPD.R |only gRbase-1.7-5/gRbase/R/graph-algo-mcs.R |only gRbase-1.7-5/gRbase/R/graph-algo-minimalTriang.R |only gRbase-1.7-5/gRbase/R/graph-algo-moralize.R |only gRbase-1.7-5/gRbase/R/graph-algo-rip.R |only gRbase-1.7-5/gRbase/R/graph-algo-topoSort.R |only gRbase-1.7-5/gRbase/R/graph-algo-triangulate.R |only gRbase-1.7-5/gRbase/R/tableInterface.R |only gRbase-1.7-5/gRbase/data/BodyFat.txt.gz |only gRbase-1.7-5/gRbase/data/cad1.txt.gz |only gRbase-1.7-5/gRbase/data/cad2.txt.gz |only gRbase-1.7-5/gRbase/data/carcass.txt.gz |only gRbase-1.7-5/gRbase/data/carcassall.txt.gz |only gRbase-1.7-5/gRbase/data/dietox.txt.gz |only gRbase-1.7-5/gRbase/data/math.txt.gz |only gRbase-1.7-5/gRbase/data/mathmark.txt.gz |only gRbase-1.7-5/gRbase/data/milkcomp.txt.gz |only gRbase-1.7-5/gRbase/data/milkcomp1.txt.gz |only gRbase-1.7-5/gRbase/data/rats.txt.gz |only gRbase-1.7-5/gRbase/data/wine.txt.gz |only gRbase-1.7-5/gRbase/inst/doc/gRbase-arrayops.R |only gRbase-1.7-5/gRbase/inst/doc/gRbase-arrayops.Rnw |only gRbase-1.7-5/gRbase/inst/doc/gRbase-arrayops.pdf |only gRbase-1.7-5/gRbase/man/DATA-BodyFat.Rd |only gRbase-1.7-5/gRbase/man/DATA-Nutrimouse.Rd |only gRbase-1.7-5/gRbase/man/DATA-ashtrees.Rd |only gRbase-1.7-5/gRbase/man/DATA-breastcancer.Rd |only gRbase-1.7-5/gRbase/man/DATA-cad.Rd |only gRbase-1.7-5/gRbase/man/DATA-carcass.Rd |only gRbase-1.7-5/gRbase/man/DATA-chestSim.Rd |only gRbase-1.7-5/gRbase/man/DATA-dietox.Rd |only gRbase-1.7-5/gRbase/man/DATA-dumping.Rd |only gRbase-1.7-5/gRbase/man/DATA-lizard.Rd |only gRbase-1.7-5/gRbase/man/DATA-mathmark.Rd |only gRbase-1.7-5/gRbase/man/DATA-mildew.Rd |only gRbase-1.7-5/gRbase/man/DATA-milkcomp.Rd |only gRbase-1.7-5/gRbase/man/DATA-rats.Rd |only gRbase-1.7-5/gRbase/man/DATA-reinis.Rd |only gRbase-1.7-5/gRbase/man/DATA-wine.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-coerce.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-edgeList.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-getClique.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-glist2adjMAT.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-is-graph.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-isGraphical.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-mcs.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-minimalTriang.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-moralize.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-mpd.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-operations1.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-querygraph.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-randomDag.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-rip.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-topoSort.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-triangulate.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-ugdag.Rd |only gRbase-1.7-5/gRbase/man/GraphAlgo-vpar.Rd |only gRbase-1.7-5/gRbase/man/array-parray.Rd |only gRbase-1.7-5/gRbase/man/array-simulateArray.Rd |only gRbase-1.7-5/gRbase/man/array-tabMult.Rd |only gRbase-1.7-5/gRbase/man/array-table-operations.Rd |only gRbase-1.7-5/gRbase/man/arrayCombine.Rd |only gRbase-1.7-5/gRbase/man/compile-propagate.Rd |only gRbase-1.7-5/gRbase/man/iplot.Rd |only gRbase-1.7-5/gRbase/src/MakevarsOLD |only gRbase-1.7-5/gRbase/src/c-arrayops.c |only gRbase-1.7-5/gRbase/src/c-combnPrimC.c |only gRbase-1.7-5/gRbase/src/c-setops.c |only gRbase-1.7-5/gRbase/src/c-utilities.c |only gRbase-1.7-5/gRbase/vignettes/gRbase-arrayops.Rnw |only gRbase-1.8-1/gRbase/ChangeLog | 1120 ++++++------ gRbase-1.8-1/gRbase/DESCRIPTION | 71 gRbase-1.8-1/gRbase/MD5 | 264 +- gRbase-1.8-1/gRbase/NAMESPACE | 364 ++-- gRbase-1.8-1/gRbase/R/Generics.R | 105 - gRbase-1.8-1/gRbase/R/RcppExports.R | 70 gRbase-1.8-1/gRbase/R/combnC-c.R |only gRbase-1.8-1/gRbase/R/cov2pcor.R |only gRbase-1.8-1/gRbase/R/data-ashtrees.R |only gRbase-1.8-1/gRbase/R/data-bodyfat.R |only gRbase-1.8-1/gRbase/R/data-breastcancer.R |only gRbase-1.8-1/gRbase/R/data-cad.R |only gRbase-1.8-1/gRbase/R/data-carcass.R |only gRbase-1.8-1/gRbase/R/data-chestsim.R |only gRbase-1.8-1/gRbase/R/data-dietox.R |only gRbase-1.8-1/gRbase/R/data-dumping.R |only gRbase-1.8-1/gRbase/R/data-lizard.R |only gRbase-1.8-1/gRbase/R/data-mathmark.R |only gRbase-1.8-1/gRbase/R/data-mildew.R |only gRbase-1.8-1/gRbase/R/data-milkcomp.R |only gRbase-1.8-1/gRbase/R/data-nutrimouse.R |only gRbase-1.8-1/gRbase/R/data-rats.R |only gRbase-1.8-1/gRbase/R/data-reinis.R |only gRbase-1.8-1/gRbase/R/data-winecomp.R |only gRbase-1.8-1/gRbase/R/gRbase-internal.R |only gRbase-1.8-1/gRbase/R/gRbase-package.R |only gRbase-1.8-1/gRbase/R/gRbase-utilities-FIXME-cleanup.R | 345 +-- gRbase-1.8-1/gRbase/R/graph-coerce.R | 562 +----- gRbase-1.8-1/gRbase/R/graph-create-ugdag.R | 194 +- gRbase-1.8-1/gRbase/R/graph-iplot.R |only gRbase-1.8-1/gRbase/R/graph-mcs.R |only gRbase-1.8-1/gRbase/R/graph-mintriang.R |only gRbase-1.8-1/gRbase/R/graph-moralize.R |only gRbase-1.8-1/gRbase/R/graph-mpd.R |only gRbase-1.8-1/gRbase/R/graph-properties.R | 781 +++++--- gRbase-1.8-1/gRbase/R/graph-querygraph.R | 418 ++-- gRbase-1.8-1/gRbase/R/graph-rip.R |only gRbase-1.8-1/gRbase/R/graph-topoSort.R |only gRbase-1.8-1/gRbase/R/graph-triangulate.R |only gRbase-1.8-1/gRbase/R/graph-utilities.R | 598 ++++-- gRbase-1.8-1/gRbase/R/graph-xxx2yyy.R |only gRbase-1.8-1/gRbase/R/processFormula.R | 1106 ++++++------ gRbase-1.8-1/gRbase/R/t_arDist.R |only gRbase-1.8-1/gRbase/R/t_array-algebra-cR.R |only gRbase-1.8-1/gRbase/R/t_array-algebra.R |only gRbase-1.8-1/gRbase/R/t_array-create.R |only gRbase-1.8-1/gRbase/R/t_array-lowlevel-ops.R |only gRbase-1.8-1/gRbase/R/t_array-operations-bristol.R |only gRbase-1.8-1/gRbase/R/t_array-operations.R |only gRbase-1.8-1/gRbase/R/t_array-parray.R |only gRbase-1.8-1/gRbase/R/t_array-properties.R |only gRbase-1.8-1/gRbase/R/t_array-simulate-R.R |only gRbase-1.8-1/gRbase/R/t_array-slice.R |only gRbase-1.8-1/gRbase/R/u_setops-c.R |only gRbase-1.8-1/gRbase/R/u_utilities-c.R |only gRbase-1.8-1/gRbase/R/yyOLD-gRbase.R | 1525 ++++++++-------- gRbase-1.8-1/gRbase/R/yyyPrim.R | 68 gRbase-1.8-1/gRbase/TODO | 12 gRbase-1.8-1/gRbase/build/vignette.rds |binary gRbase-1.8-1/gRbase/data/BodyFat.RData |only gRbase-1.8-1/gRbase/data/cad1.RData |only gRbase-1.8-1/gRbase/data/cad2.RData |only gRbase-1.8-1/gRbase/data/carcass.RData |only gRbase-1.8-1/gRbase/data/carcassall.RData |only gRbase-1.8-1/gRbase/data/dietox.RData |only gRbase-1.8-1/gRbase/data/math.RData |only gRbase-1.8-1/gRbase/data/mathmark.RData |only gRbase-1.8-1/gRbase/data/milkcomp.RData |only gRbase-1.8-1/gRbase/data/milkcomp1.RData |only gRbase-1.8-1/gRbase/data/rats.RData |only gRbase-1.8-1/gRbase/data/wine.RData |only gRbase-1.8-1/gRbase/inst/CITATION | 40 gRbase-1.8-1/gRbase/inst/doc/gRbase-arrays.R |only gRbase-1.8-1/gRbase/inst/doc/gRbase-arrays.Rnw |only gRbase-1.8-1/gRbase/inst/doc/gRbase-arrays.pdf |only gRbase-1.8-1/gRbase/inst/doc/gRbase-graphs.pdf |binary gRbase-1.8-1/gRbase/inst/include/gRbase_RcppExports.h | 695 +++---- gRbase-1.8-1/gRbase/man/BodyFat.Rd |only gRbase-1.8-1/gRbase/man/Nutrimouse.Rd |only gRbase-1.8-1/gRbase/man/ZOLD-gModel.Rd | 122 - gRbase-1.8-1/gRbase/man/ZOLD-gRfit.Rd | 110 - gRbase-1.8-1/gRbase/man/ZOLD-gmData.Rd | 314 +-- gRbase-1.8-1/gRbase/man/ZOLD-hllm.Rd | 122 - gRbase-1.8-1/gRbase/man/ZOLD-validVarTypes.Rd | 86 gRbase-1.8-1/gRbase/man/array-algebra.Rd |only gRbase-1.8-1/gRbase/man/array-create.Rd |only gRbase-1.8-1/gRbase/man/array-dimnames.Rd |only gRbase-1.8-1/gRbase/man/array-distribution.Rd |only gRbase-1.8-1/gRbase/man/array-normalize.Rd |only gRbase-1.8-1/gRbase/man/array-operations.Rd |only gRbase-1.8-1/gRbase/man/array-properties.Rd |only gRbase-1.8-1/gRbase/man/array-slice.Rd |only gRbase-1.8-1/gRbase/man/arraypack-internal.Rd | 136 - gRbase-1.8-1/gRbase/man/ashtrees.Rd |only gRbase-1.8-1/gRbase/man/breastcancer.Rd |only gRbase-1.8-1/gRbase/man/cad.Rd |only gRbase-1.8-1/gRbase/man/carcass.Rd |only gRbase-1.8-1/gRbase/man/chestSim.Rd |only gRbase-1.8-1/gRbase/man/combnPrim.Rd | 136 - gRbase-1.8-1/gRbase/man/compareModels.Rd | 62 gRbase-1.8-1/gRbase/man/cov2pcor.Rd | 79 gRbase-1.8-1/gRbase/man/dietox.Rd |only gRbase-1.8-1/gRbase/man/dumping.Rd |only gRbase-1.8-1/gRbase/man/gRbase-generics.Rd |only gRbase-1.8-1/gRbase/man/gRbase-internal.Rd | 495 ++--- gRbase-1.8-1/gRbase/man/gRbase-utilities.Rd | 122 - gRbase-1.8-1/gRbase/man/gRbase.Rd | 108 - gRbase-1.8-1/gRbase/man/graph-cliques.Rd |only gRbase-1.8-1/gRbase/man/graph-coerce.Rd |only gRbase-1.8-1/gRbase/man/graph-create.Rd |only gRbase-1.8-1/gRbase/man/graph-edgeList.Rd |only gRbase-1.8-1/gRbase/man/graph-gcproperties.Rd |only gRbase-1.8-1/gRbase/man/graph-iplot.Rd |only gRbase-1.8-1/gRbase/man/graph-is.Rd |only gRbase-1.8-1/gRbase/man/graph-mcs.Rd |only gRbase-1.8-1/gRbase/man/graph-minimaltriang.Rd |only gRbase-1.8-1/gRbase/man/graph-moralize.Rd |only gRbase-1.8-1/gRbase/man/graph-mpd.Rd |only gRbase-1.8-1/gRbase/man/graph-query.Rd |only gRbase-1.8-1/gRbase/man/graph-randomdag.Rd |only gRbase-1.8-1/gRbase/man/graph-rip.Rd |only gRbase-1.8-1/gRbase/man/graph-toposort.Rd |only gRbase-1.8-1/gRbase/man/graph-triangulate.Rd |only gRbase-1.8-1/gRbase/man/graph-vpar.Rd |only gRbase-1.8-1/gRbase/man/graph-xxx2yyy.Rd |only gRbase-1.8-1/gRbase/man/lizard.Rd |only gRbase-1.8-1/gRbase/man/mathmark.Rd |only gRbase-1.8-1/gRbase/man/mildew.Rd |only gRbase-1.8-1/gRbase/man/milkcomp.Rd |only gRbase-1.8-1/gRbase/man/old-array-operations.Rd |only gRbase-1.8-1/gRbase/man/old-parray.Rd |only gRbase-1.8-1/gRbase/man/rats.Rd |only gRbase-1.8-1/gRbase/man/reinis.Rd |only gRbase-1.8-1/gRbase/man/removeRedundant.Rd | 158 - gRbase-1.8-1/gRbase/man/simulateArray.Rd |only gRbase-1.8-1/gRbase/man/wine.Rd |only gRbase-1.8-1/gRbase/src/RcppExports.cpp | 1533 ++++++++--------- gRbase-1.8-1/gRbase/src/_t_array_properties.cpp |only gRbase-1.8-1/gRbase/src/_t_array_properties.h |only gRbase-1.8-1/gRbase/src/_t_arrayops.c |only gRbase-1.8-1/gRbase/src/_t_tableCore.cpp | 287 ++- gRbase-1.8-1/gRbase/src/_u_setops.c |only gRbase-1.8-1/gRbase/src/_u_utilities.c |only gRbase-1.8-1/gRbase/src/combnC.c | 26 gRbase-1.8-1/gRbase/src/combnPrimC.c |only gRbase-1.8-1/gRbase/src/concatenate.h | 53 gRbase-1.8-1/gRbase/vignettes/gRbase-arrays.Rnw |only gRbase-1.8-1/gRbase/vignettes/gRbase.bib | 326 +-- 228 files changed, 6592 insertions(+), 6021 deletions(-)
More information about DirectStandardisation at CRAN
Permanent link
Title: Plotting D3 Hierarchical Plots in R and Shiny
Description: Plotting hierarchical plots in R such as Sunburst, Treemap, Circle Treemap, Partition Chart, collapsible indented tree and collapsible tree.
Author: Antoine GUILLOT [cre],
Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org. The partitionChart, sunburst, the treemap, the
zoomable circlePacking, the collapsible indented tree and the
collapsible tree are all derived from his works.)
Maintainer: Antoine GUILLOT <antoine.guil@outlook.fr>
Diff between D3partitionR versions 0.1 dated 2016-10-01 and 0.2.0 dated 2016-10-16
DESCRIPTION | 15 MD5 | 14 R/AdditionalFunctions.R | 24 R/D3partitionR.R | 64 +- inst/htmlwidgets/D3partitionR.js | 936 +++++++++++++++++++++++++++------- inst/htmlwidgets/lib/style/circle.css | 30 + man/D3partitionR-shiny.Rd | 2 man/D3partitionR.Rd | 45 + 8 files changed, 886 insertions(+), 244 deletions(-)
Title: A Companion to the e-Book "YaRrr!: The Pirate's Guide to R"
Description: Contains a mixture of functions and data sets referred to in the introductory e-book "YaRrr!: The Pirate's Guide to R". The latest version of the e-book is available for free at <https://www.thepiratesguidetor.com>.
Author: Nathaniel Phillips [aut, cre]
Maintainer: Nathaniel Phillips <yarrr.book@gmail.com>
Diff between yarrr versions 0.0.9 dated 2016-10-08 and 0.1.1 dated 2016-10-16
DESCRIPTION | 12 MD5 | 31 - NAMESPACE | 1 NEWS.md |only R/pirateplot_function.R | 1018 ++++++++++++++++++++++------------------------- README.md | 52 -- build/vignette.rds |binary inst/doc/guide.html | 6 inst/doc/piratepal.R | 11 inst/doc/piratepal.Rmd | 13 inst/doc/piratepal.html | 17 inst/doc/pirateplot.R | 229 +++++++--- inst/doc/pirateplot.Rmd | 297 +++++++++---- inst/doc/pirateplot.html | 343 ++++++++++++--- man/pirateplot.Rd | 153 +++++-- vignettes/piratepal.Rmd | 13 vignettes/pirateplot.Rmd | 297 +++++++++---- 17 files changed, 1481 insertions(+), 1012 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut, cre],
Joe Cheng [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
Winston Chang [aut],
Jeff Allen [aut],
Hadley Wickham [aut],
Aron Atkins [aut],
Rob Hyndman [aut],
RStudio, Inc. [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
Eli Grey [ctb, cph] (FileSaver library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between rmarkdown versions 1.0 dated 2016-07-08 and 1.1 dated 2016-10-16
DESCRIPTION | 16 +- MD5 | 104 ++++++++++--------- NAMESPACE | 3 R/beamer_presentation.R | 101 +++++++++++++++--- R/github_document.R | 3 R/html_dependencies.R | 11 ++ R/html_document.R | 42 +++++++ R/html_document_base.R | 2 R/html_fragment.R | 8 - R/html_notebook.R | 42 +++++++ R/html_notebook_output.R | 28 ++--- R/html_paged.R |only R/html_resources.R | 3 R/html_vignette.R | 2 R/ioslides_presentation.R | 11 ++ R/knit_print.R |only R/md_document.R | 2 R/output_format.R | 37 ++++++ R/pandoc.R | 24 ++++ R/params.R | 20 ++- R/pdf_document.R | 2 R/render.R | 167 +++++++++++++++++++++++++------ R/render_site.R | 3 R/shiny.R | 5 R/slidy_presentation.R | 11 ++ R/util.R | 54 ++++++++-- R/word_document.R | 4 R/zzz.R | 28 +++++ inst/NEWS | 49 +++++++++ inst/rmd/h/default.html | 50 +++++++++ inst/rmd/h/navigation-1.1/codefolding.js | 5 inst/rmd/h/pagedtable-0.0.1 |only inst/rmd/ioslides/default.html | 6 - inst/rmd/latex/default-1.14.tex | 8 - inst/rmd/latex/default-1.15.2.tex | 8 - inst/rmd/latex/default-1.17.0.2.tex | 7 - inst/rmd/latex/default.tex | 1 inst/rmd/slidy/default.html | 9 + man/beamer_presentation.Rd | 15 ++ man/github_document.Rd | 14 ++ man/html_document.Rd | 11 +- man/html_fragment.Rd | 13 ++ man/html_notebook_output.Rd | 6 - man/html_vignette.Rd | 14 ++ man/ioslides_presentation.Rd | 17 ++- man/md_document.Rd | 13 ++ man/navbar_html.Rd |only man/output_format.Rd | 15 ++ man/pdf_document.Rd | 18 ++- man/render.Rd | 2 man/slidy_presentation.Rd | 17 ++- man/word_document.Rd | 14 ++ man/yaml_front_matter.Rd |only tests/testthat/test-formats.R | 21 ++- tests/testthat/test-formats.Rmd | 10 + 55 files changed, 872 insertions(+), 204 deletions(-)
More information about ebimetagenomics at CRAN
Permanent link
Title: Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH
Models
Description: Simulation, estimation and forecasting of first-order Beta-Skew-t-EGARCH models with leverage (one-component, two-component, skewed versions).
Author: Genaro Sucarrat
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>
Diff between betategarch versions 3.2 dated 2014-09-18 and 3.3 dated 2016-10-16
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- NAMESPACE | 1 + NEWS | 6 ++++++ man/betategarch-package.Rd | 12 ++++++++---- man/coef.tegarch.Rd | 5 ++++- man/nasdaq.Rd | 5 +++-- man/predict.tegarch.Rd | 4 +++- man/tegarch.Rd | 5 ++++- man/tegarchLogl.Rd | 4 +++- man/tegarchSim.Rd | 4 +++- src/betategarch.cpp | 8 ++++---- 12 files changed, 56 insertions(+), 32 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-18 0.1.3
2016-08-13 0.1.2
2016-08-06 0.1.0
Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal
and Skew-Normal distributions, considering appropriate parameterizations of
the variance-covariance matrix that takes into account the intrinsic nature of
interval data, and lead to four different possible configuration structures.
The Skew-Normal parameters can be estimated by maximum likelihood, while Normal
parameters may be estimated by maximum likelihood or robust trimmed maximum
likelihood methods.
Author: Pedro Duarte Silva <psilva@porto.ucp.pt>, Paula Brito
<mpbrito.fep.up.pt>
Maintainer: Pedro Duarte Silva <psilva@porto.ucp.pt>
Diff between MAINT.Data versions 0.5.1 dated 2015-10-20 and 1.0.0 dated 2016-10-16
MAINT.Data-0.5.1/MAINT.Data/man/IdtClMANOVA-class.Rd |only MAINT.Data-0.5.1/MAINT.Data/man/IdtHetNMANOVA-class.Rd |only MAINT.Data-0.5.1/MAINT.Data/man/IdtSngDE-class.Rd |only MAINT.Data-0.5.1/MAINT.Data/man/lda-methods.Rd |only MAINT.Data-0.5.1/MAINT.Data/man/qda-methods.Rd |only MAINT.Data-0.5.1/MAINT.Data/man/stdEr.Rd |only MAINT.Data-1.0.0/MAINT.Data/CHANGELOG | 20 MAINT.Data-1.0.0/MAINT.Data/DESCRIPTION | 27 MAINT.Data-1.0.0/MAINT.Data/MD5 | 124 +- MAINT.Data-1.0.0/MAINT.Data/NAMESPACE | 31 MAINT.Data-1.0.0/MAINT.Data/R/Azzalini_sn_code.R |only MAINT.Data-1.0.0/MAINT.Data/R/CPLogLik.grads.R |only MAINT.Data-1.0.0/MAINT.Data/R/CPMaxLik.R |only MAINT.Data-1.0.0/MAINT.Data/R/CholeskiGradients.R | 23 MAINT.Data-1.0.0/MAINT.Data/R/ClasGenMetDef.R | 160 ++ MAINT.Data-1.0.0/MAINT.Data/R/Conversions.R |only MAINT.Data-1.0.0/MAINT.Data/R/DACrossVal.R | 88 + MAINT.Data-1.0.0/MAINT.Data/R/IData.R | 191 +-- MAINT.Data-1.0.0/MAINT.Data/R/IdtMaxLikN.R |only MAINT.Data-1.0.0/MAINT.Data/R/IdtMaxLikNC2.R | 67 - MAINT.Data-1.0.0/MAINT.Data/R/IdtMaxLikSN.R |only MAINT.Data-1.0.0/MAINT.Data/R/MxtDist.fit.R |only MAINT.Data-1.0.0/MAINT.Data/R/RepLOptim.R | 239 ++-- MAINT.Data-1.0.0/MAINT.Data/R/RestCPMaxLik.R |only MAINT.Data-1.0.0/MAINT.Data/R/Rfasttle.R |only MAINT.Data-1.0.0/MAINT.Data/R/Rfulltle.R |only MAINT.Data-1.0.0/MAINT.Data/R/RobMxtDEst.R |only MAINT.Data-1.0.0/MAINT.Data/R/Robldaqda.R |only MAINT.Data-1.0.0/MAINT.Data/R/SNmle.R |only MAINT.Data-1.0.0/MAINT.Data/R/SkNObsLikGradients.R |only MAINT.Data-1.0.0/MAINT.Data/R/fasttle.R |only MAINT.Data-1.0.0/MAINT.Data/R/feasmu0.R |only MAINT.Data-1.0.0/MAINT.Data/R/fulltle.R |only MAINT.Data-1.0.0/MAINT.Data/R/lqda.R | 497 ++++++-- MAINT.Data-1.0.0/MAINT.Data/R/mle.R | 893 ++++++++-------- MAINT.Data-1.0.0/MAINT.Data/R/mleVCOV.R |only MAINT.Data-1.0.0/MAINT.Data/R/msnCP.dev.R |only MAINT.Data-1.0.0/MAINT.Data/R/msnCP.dev.grad.R |only MAINT.Data-1.0.0/MAINT.Data/R/pdwt.solve.R |only MAINT.Data-1.0.0/MAINT.Data/R/sknda.R |only MAINT.Data-1.0.0/MAINT.Data/R/sysdata.rda |only MAINT.Data-1.0.0/MAINT.Data/data/CarsData.RData |only MAINT.Data-1.0.0/MAINT.Data/man/BestModel-methods.Rd | 29 MAINT.Data-1.0.0/MAINT.Data/man/CarsData.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/ConfTests-class.Rd | 33 MAINT.Data-1.0.0/MAINT.Data/man/DACrossVal.Rd | 40 MAINT.Data-1.0.0/MAINT.Data/man/IData-class.Rd | 37 MAINT.Data-1.0.0/MAINT.Data/man/IData.Rd | 15 MAINT.Data-1.0.0/MAINT.Data/man/IdtE-class.Rd | 30 MAINT.Data-1.0.0/MAINT.Data/man/IdtMANOVA-class.Rd | 68 - MAINT.Data-1.0.0/MAINT.Data/man/IdtMxE-class.Rd | 31 MAINT.Data-1.0.0/MAINT.Data/man/IdtMxNDE-class.Rd | 44 MAINT.Data-1.0.0/MAINT.Data/man/IdtMxNDRE-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/IdtMxNandSNDE-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/IdtMxSNDE-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/IdtNDE-class.Rd | 15 MAINT.Data-1.0.0/MAINT.Data/man/IdtNandSNDE-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/IdtSNDE-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/IdtSNgenda-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/IdtSNlocda-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/IdtSngNDE-class.Rd | 37 MAINT.Data-1.0.0/MAINT.Data/man/IdtSngNDRE-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/IdtSngNandSNDE-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/IdtSngSNDE-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/Idtlda-class.Rd | 20 MAINT.Data-1.0.0/MAINT.Data/man/Idtqda-class.Rd | 88 - MAINT.Data-1.0.0/MAINT.Data/man/MAINT.Data-internal.Rd | 168 ++- MAINT.Data-1.0.0/MAINT.Data/man/MAINT.Data-package.Rd | 286 +++-- MAINT.Data-1.0.0/MAINT.Data/man/MANOVA-methods.Rd | 158 +- MAINT.Data-1.0.0/MAINT.Data/man/RepLOptim.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/RobEstControl-class.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/RobEstControl.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/RobMxtDEst-methods.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/coef-methods.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/da-methods.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/extmatrix.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/fasttle-methods.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/fulltle-methods.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/mle-methods.Rd | 73 - MAINT.Data-1.0.0/MAINT.Data/man/stdEr-methods.Rd |only MAINT.Data-1.0.0/MAINT.Data/man/testMod-methods.Rd | 109 - MAINT.Data-1.0.0/MAINT.Data/man/vcov-methods.Rd |only MAINT.Data-1.0.0/MAINT.Data/src |only 83 files changed, 2277 insertions(+), 1364 deletions(-)
Title: Tidy Up and Test XPath Queries on HTML and XML Content
Description: HTML documents can be beautiful and pristine. They can also be
wretched, evil, malformed demon-spawn. Now, you can tidy up that HTML and XHTML
before processing it with your favorite angle-bracket crunching tools, going beyond
the limited tidying that 'libxml2' affords in the 'XML' and 'xml2' packages and
taming even the ugliest HTML code generated by the likes of Google Docs and Microsoft
Word. It's also possible to use the functions provided to format or "pretty print"
HTML content as it is being tidied. Utilities are also included that make it
possible to view formatted and "pretty printed" HTML/XML
content from HTML/XML document objects, nodes, node sets and plain character HTML/XML
using 'vkbeautify' (by Vadim Kiryukhin) and 'highlight.js' (by Ivan Sagalaev).
Also (optionally) enables filtering of nodes via XPath or viewing an HTML/XML document
in "tree" view using 'xml-viewer' (by Julian Gruber). See
<https://github.com/vkiryukhin/vkBeautify> and
<https://github.com/juliangruber/xml-viewer> for more information about 'vkbeautify'
and 'xml-viewer', respectively.
Author: Bob Rudis [aut, cre],
Dave Raggett [ctb, aut] (Original HTML Tidy library),
Charles Reitzel [ctb, aut] (Modern HTML Tidy library),
Björn Höhrmann [ctb, aut] (HTML5 Support),
Kenton Russell [aut, ctb] (xml-viewer integration),
Vadim Kiryukhin [ctb, cph] (vkbeautify library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Julian Gruber [ctb, cph] (xml-viewer library)
Maintainer: Bob Rudis <bob@rud.is>
Diff between htmltidy versions 0.2.0 dated 2016-09-10 and 0.3.0 dated 2016-10-16
DESCRIPTION | 47 +++++++++--- MD5 | 158 +++++++++++++++++++++++++++++++++++++---- NAMESPACE | 12 +++ NEWS.md | 14 ++- R/RcppExports.R | 6 - R/htmltidy-package.r | 14 ++- R/response.r |only R/shiny-tree-view.R |only R/shiny.R |only R/tidy.r | 44 +++++++---- R/xmltreeview.R |only R/xmlview.R |only README.md | 59 +++++++++++++-- inst/COPYRIGHTS | 10 ++ inst/extdata |only inst/htmlwidgets |only man/highlight_styles.Rd |only man/htmltidy.Rd | 12 ++- man/renderXmlview.Rd |only man/tidy_html.Rd | 41 +++++++--- man/xml_tree_view.Rd |only man/xml_view.Rd |only man/xmltreeview-shiny.Rd |only man/xmlviewOutput.Rd |only src/RcppExports.cpp | 15 ++- src/htmltidy.cpp | 40 ++++++++-- tests/testthat/test-htmltidy.R | 6 + 27 files changed, 394 insertions(+), 84 deletions(-)
Title: Construction of Regular and Irregular Histograms with Different
Options for Automatic Choice of Bins
Description: Automatic construction of regular and irregular histograms as described in Rozenholc/Mildenberger/Gather (2010).
Author: Thoralf Mildenberger [aut, cre],
Yves Rozenholc [aut],
David Zasada [aut]
Maintainer: Thoralf Mildenberger <mild@zhaw.ch>
Diff between histogram versions 0.0-23 dated 2009-12-24 and 0.0-24 dated 2016-10-16
DESCRIPTION | 27 +- MD5 |only NAMESPACE | 2 NEWS |only R/histogram.R | 162 ++++++------ R/histogram.irregular.R | 632 ++++++++++++++++++++++++------------------------ man/histogram.Rd | 4 7 files changed, 425 insertions(+), 402 deletions(-)
More information about KnapsackSampling at CRAN
Permanent link
Title: Fitting Semi-Parametric log-Symmetric Regression Models
Description: Set of tools to fit a semi-parametric regression model suitable for analysis of data sets in which the response variable is continuous, strictly positive, asymmetric and possibly, censored. Under this setup, both the median and the skewness of the response variable distribution are explicitly modeled by using semi-parametric functions, whose non-parametric components may be approximated by natural cubic splines or P-splines. Supported distributions for the model error include log-normal, log-Student-t, log-power-exponential, log-hyperbolic, log-contaminated-normal, log-slash, Birnbaum-Saunders and Birnbaum-Saunders-t distributions.
Author: Luis Hernando Vanegas <hvanegasp@gmail.com> and Gilberto A. Paula
Maintainer: Luis Hernando Vanegas <hvanegasp@gmail.com>
Diff between ssym versions 1.5.6 dated 2016-07-21 and 1.5.7 dated 2016-10-16
ssym-1.5.6/ssym/R/itpEC.R |only ssym-1.5.6/ssym/man/itpEC.Rd |only ssym-1.5.7/ssym/DESCRIPTION | 8 ++++---- ssym-1.5.7/ssym/MD5 | 12 +++++------- ssym-1.5.7/ssym/R/ssym.l2.R | 4 ++-- ssym-1.5.7/ssym/R/summary.ssym.R | 5 +++-- ssym-1.5.7/ssym/man/ssym-package.Rd | 4 ++-- ssym-1.5.7/ssym/man/ssym.l2.Rd | 4 +--- 8 files changed, 17 insertions(+), 20 deletions(-)
Title: Response-Surface Analysis
Description: Provides functions to generate response-surface designs,
fit first- and second-order response-surface models,
make surface plots, obtain the path of steepest ascent,
and do canonical analysis.
Author: Russell V Lenth [aut, cre]
Maintainer: Russell V Lenth <russell-lenth@uiowa.edu>
Diff between rsm versions 2.7-4 dated 2015-10-07 and 2.8 dated 2016-10-16
DESCRIPTION | 20 ++++++++---- MD5 | 19 ++++++------ NAMESPACE | 77 ++++++++++++++++++++++++++++++++++++++++++++++--- R/lsmeans-support.R |only R/rsm.R | 11 ++++++- build/vignette.rds |binary inst/NEWS | 4 ++ inst/doc/rs-illus.pdf |binary inst/doc/rsm-plots.pdf |binary inst/doc/rsm.pdf |binary man/rsm.Rd | 23 ++++++++++++++ 11 files changed, 132 insertions(+), 22 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible toolset for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre],
Paul Nulty [aut],
Kohei Watanabe [ctb],
Benjamin Lauderdale [ctb],
Adam Obeng [ctb],
Pablo Barberá [ctb],
Will Lowe [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.9.8 dated 2016-07-28 and 0.9.8.3 dated 2016-10-16
quanteda-0.9.8.3/quanteda/DESCRIPTION | 27 +- quanteda-0.9.8.3/quanteda/MD5 | 54 ++-- quanteda-0.9.8.3/quanteda/NEWS.md | 4 quanteda-0.9.8.3/quanteda/R/RcppExports.R | 6 quanteda-0.9.8.3/quanteda/R/dfm-weighting.R | 60 ++--- quanteda-0.9.8.3/quanteda/R/findSequences.R | 5 quanteda-0.9.8.3/quanteda/R/joinTokens.R | 2 quanteda-0.9.8.3/quanteda/R/quanteda.R |only quanteda-0.9.8.3/quanteda/R/readability.R | 186 ++++++++-------- quanteda-0.9.8.3/quanteda/R/stopwords.R | 4 quanteda-0.9.8.3/quanteda/R/textfile.R | 21 + quanteda-0.9.8.3/quanteda/README.md | 23 + quanteda-0.9.8.3/quanteda/inst/doc/LitVignette.html | 10 quanteda-0.9.8.3/quanteda/inst/doc/quickstart.R | 10 quanteda-0.9.8.3/quanteda/inst/doc/quickstart.Rmd | 27 -- quanteda-0.9.8.3/quanteda/inst/doc/quickstart.html | 54 +--- quanteda-0.9.8.3/quanteda/man/docfreq.Rd | 12 - quanteda-0.9.8.3/quanteda/man/findSequences.Rd | 5 quanteda-0.9.8.3/quanteda/man/joinTokens.Rd | 2 quanteda-0.9.8.3/quanteda/man/quanteda-package.Rd | 10 quanteda-0.9.8.3/quanteda/man/readability.Rd | 10 quanteda-0.9.8.3/quanteda/man/scrabble.Rd | 10 quanteda-0.9.8.3/quanteda/man/tf.Rd | 39 ++- quanteda-0.9.8.3/quanteda/src/RcppExports.cpp | 60 ++--- quanteda-0.9.8.3/quanteda/src/sequences.cpp | 45 +-- quanteda-0.9.8.3/quanteda/src/tokens_join.cpp | 9 quanteda-0.9.8.3/quanteda/tests/testthat/testTextfile.R | 16 - quanteda-0.9.8.3/quanteda/vignettes/quickstart.Rmd | 27 -- quanteda-0.9.8/quanteda/R/quanteda-package.R |only 29 files changed, 333 insertions(+), 405 deletions(-)