Title: Super Imposition by Translation and Rotation Growth Curve
Analysis
Description: Functions for fitting and plotting SITAR (Super Imposition by
Translation And Rotation) growth curve models. SITAR is a shape-invariant model
with a regression B-spline mean curve and subject-specific random effects on
both the measurement and age scales.
Author: Tim Cole
Maintainer: Tim Cole <tim.cole@ucl.ac.uk>
Diff between sitar versions 1.0.7 dated 2016-07-31 and 1.0.8 dated 2016-10-17
DESCRIPTION | 8 ++--- MD5 | 18 ++++++----- NAMESPACE | 4 ++ NEWS | 11 +++++++ R/BICadj.R | 4 +- R/plot.sitar.R | 57 ++++++++++++++++++++----------------- R/sitar.R | 11 +------ R/sitarlib.R | 82 +++++++++++++++++++++++++++--------------------------- R/timegap.R |only man/plot.sitar.Rd | 7 +++- man/timegap.Rd |only 11 files changed, 111 insertions(+), 91 deletions(-)
Title: Functions for Calculating Daily Solar Radiation and
Evapotranspiration
Description: Calculating daily global solar radiation at horizontal surface using several well-known models (i.e. Angstrom-Prescott, Supit-Van Kappel, Hargreaves, Bristow and Campbell, and Mahmood-Hubbard), and model calibration based on ground-truth data, and (3) model auto-calibration. The FAO Penmann-Monteith equation to calculate evapotranspiration is also included.
Author: Jedrzej S. Bojanowski
Maintainer: Jedrzej S. Bojanowski <jedrzej.bojanowski@gmail.com>
Diff between sirad versions 2.3-1 dated 2015-12-12 and 2.3-3 dated 2016-10-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/bcauto.R | 27 ++++++++++++++++----------- R/et0.r | 2 +- R/exd.R | 8 +++++++- R/exh.R | 19 +++++++++++++------ man/extrat.Rd | 4 ++-- man/sirad-package.Rd | 6 +++--- 8 files changed, 53 insertions(+), 35 deletions(-)
Title: Models for Health Economic Evaluation
Description: Health Economic Evaluation Modelling.
Markov models (decision trees, homogeneous and non-homogeneous)
for health economic evaluation. Model comparison,
sensitivity and probabilistic analysis.
Author: Antoine Filipovic-Pierucci [aut, cre],
Kevin Zarca [aut],
Matthew Wiener [ctb],
Zdenek Kabat [ctb],
Vojtech Filipec [ctb]
Maintainer: Antoine Filipovic-Pierucci <pierucci@gmail.com>
Diff between heemod versions 0.4.0 dated 2016-09-16 and 0.5.0 dated 2016-10-17
heemod-0.4.0/heemod/inst/doc/b-homogeneous.R |only heemod-0.4.0/heemod/inst/doc/b-homogeneous.Rmd |only heemod-0.4.0/heemod/inst/doc/b-homogeneous.html |only heemod-0.4.0/heemod/inst/doc/c-non-homogeneous.R |only heemod-0.4.0/heemod/inst/doc/c-non-homogeneous.Rmd |only heemod-0.4.0/heemod/inst/doc/c-non-homogeneous.html |only heemod-0.4.0/heemod/inst/doc/d-probabilistic.R |only heemod-0.4.0/heemod/inst/doc/d-probabilistic.Rmd |only heemod-0.4.0/heemod/inst/doc/d-probabilistic.html |only heemod-0.4.0/heemod/inst/doc/e-sensitivity.R |only heemod-0.4.0/heemod/inst/doc/e-sensitivity.Rmd |only heemod-0.4.0/heemod/inst/doc/e-sensitivity.html |only heemod-0.4.0/heemod/inst/examples/example_define_matrix.R |only heemod-0.4.0/heemod/inst/examples/example_define_model.R |only heemod-0.4.0/heemod/inst/examples/example_plot.run_models.R |only heemod-0.4.0/heemod/inst/examples/example_run_models.R |only heemod-0.4.0/heemod/inst/examples/example_run_probabilistic.R |only heemod-0.4.0/heemod/inst/examples/example_run_sensitivity.R |only heemod-0.4.0/heemod/man/define_distrib.Rd |only heemod-0.4.0/heemod/man/define_matrix.Rd |only heemod-0.4.0/heemod/man/define_model.Rd |only heemod-0.4.0/heemod/man/define_sensitivity.Rd |only heemod-0.4.0/heemod/man/get_model.Rd |only heemod-0.4.0/heemod/man/plot.run_models.Rd |only heemod-0.4.0/heemod/man/run_models.Rd |only heemod-0.4.0/heemod/man/run_models_tabular.Rd |only heemod-0.4.0/heemod/man/run_probabilistic.Rd |only heemod-0.4.0/heemod/man/run_sensitivity.Rd |only heemod-0.4.0/heemod/man/summary.run_models.Rd |only heemod-0.4.0/heemod/vignettes/b-homogeneous.Rmd |only heemod-0.4.0/heemod/vignettes/c-non-homogeneous.Rmd |only heemod-0.4.0/heemod/vignettes/d-probabilistic.Rmd |only heemod-0.4.0/heemod/vignettes/e-sensitivity.Rmd |only heemod-0.5.0/heemod/DESCRIPTION | 8 heemod-0.5.0/heemod/MD5 | 313 +++++----- heemod-0.5.0/heemod/NAMESPACE | 49 + heemod-0.5.0/heemod/NEWS.md |only heemod-0.5.0/heemod/R/acceptability_curve.R | 2 heemod-0.5.0/heemod/R/combine.R | 39 - 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heemod-0.5.0/heemod/tests/testthat/test_model.R | 187 ++++- heemod-0.5.0/heemod/tests/testthat/test_probabilistic.R | 32 - heemod-0.5.0/heemod/tests/testthat/test_run_model.R | 172 ++++- heemod-0.5.0/heemod/tests/testthat/test_sensitivity.R | 139 +++- heemod-0.5.0/heemod/tests/testthat/test_states.R | 10 heemod-0.5.0/heemod/tests/testthat/test_tabular_input.R | 290 ++++++++- heemod-0.5.0/heemod/vignettes/a-introduction.Rmd | 82 +- heemod-0.5.0/heemod/vignettes/b-time-dependency.Rmd |only heemod-0.5.0/heemod/vignettes/c-homogeneous.Rmd |only heemod-0.5.0/heemod/vignettes/d-non-homogeneous.Rmd |only heemod-0.5.0/heemod/vignettes/e-probabilistic.Rmd |only heemod-0.5.0/heemod/vignettes/f-sensitivity.Rmd |only heemod-0.5.0/heemod/vignettes/g-heterogeneity.Rmd | 32 - heemod-0.5.0/heemod/vignettes/h-tabular.Rmd | 26 heemod-0.5.0/heemod/vignettes/i-reproduction.Rmd | 22 196 files changed, 2325 insertions(+), 1389 deletions(-)
Title: Data-Limited Methods Toolkit
Description: Simulation testing and implementation of data-limited fishery stock
assessment methods.
Author: Tom Carruthers and Adrian Hordyk
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>
Diff between DLMtool versions 3.2.1 dated 2016-08-11 and 3.2.2 dated 2016-10-17
DESCRIPTION | 8 MD5 | 51 - NAMESPACE | 32 - R/ClassMeths.r | 2 R/DLM_input.R | 75 ++ R/DLM_output.R | 21 R/DataObj.r | 61 + R/MSEObj.r | 1515 ++++++++++++++++++++++++++++++++++++++++-------- R/MiscFuns.r | 77 +- R/MiscInt.r | 4 R/RcppExports.R | 14 R/runMSE.r | 45 - build/vignette.rds |binary inst/doc/DLMtool.R | 7 inst/doc/DLMtool.Rmd | 62 + inst/doc/DLMtool.html | 376 ++++++----- man/Cplot.Rd |only man/EtargetLopt.Rd |only man/Jplot.Rd |only man/Kplot.Rd | 16 man/L95target.Rd |only man/MPStats.Rd |only man/Pplot.Rd | 72 ++ man/Splot.Rd |only man/VOIplot.Rd | 8 man/barplot.MSE.Rd |only man/boxplot.DLM_data.Rd |only man/boxplot.MSE.Rd |only man/minlenLopt1.Rd |only man/plotFun.Rd |only src/RcppExports.cpp | 10 vignettes/DLMtool.Rmd | 62 + 32 files changed, 1961 insertions(+), 557 deletions(-)
Title: Conditional Visualization for Statistical Models
Description: Exploring fitted models by interactively taking 2-D and 3-D
sections in data space.
Author: Mark O'Connell [aut, cre],
Catherine Hurley [ths],
Katarina Domijan [ths],
Achim Zeileis [ctb] (spineplot, see copied.R),
R Core Team [ctb] (barplot, see copied.R)
Maintainer: Mark O'Connell <mark.oconnell@maths.nuim.ie>
Diff between condvis versions 0.3-3 dated 2016-07-04 and 0.4-1 dated 2016-10-17
DESCRIPTION | 12 +- MD5 | 49 +++++------ NEWS | 29 ++++++ R/ceplot.R | 13 +-- R/ceplot.interactive.R | 68 ++++++++++----- R/ceplot.shiny.R | 32 +++++-- R/ceplot.static.R | 17 ++- R/condtour.R | 143 ++++++++++++++++++++++++--------- R/diagnosticplots.R | 8 - R/makepath.R | 3 R/plotxc.R | 114 ++++++++++++++++++-------- R/plotxs.R | 85 +++++++++++-------- R/similarityweight.R | 11 -- R/update.R | 31 ++++--- R/weightcolor.R |only README.md | 9 +- demo/condvis-classification.R | 3 demo/condvis-regression.R | 2 man/ceplot.Rd | 4 man/condtour.Rd | 14 ++- man/condvis-package.Rd | 6 - man/plotxc.Rd | 37 ++++++-- man/plotxs.Rd | 10 ++ man/similarityweight.Rd | 2 tests/testthat/test.makepath.R | 2 tests/testthat/test.similarityweight.R | 6 + 26 files changed, 482 insertions(+), 228 deletions(-)
Title: Stochastic Process Model for Analysis of Longitudinal and
Time-to-Event Outcomes
Description: Utilities to estimate parameters of the models with survival functions
induced by stochastic covariates. Miscellaneous functions for data preparation
and simulation are also provided. For more information, see: (i) "Life tables
with covariates: Dynamic model for nonlinear analysis of longitudinal data"
by Akushevich, I. et al. (2005), Mathematical Population Studies 12(2), 51(80),
<DOI:10.1080/08898480590932296>; (ii) "Stochastic model for analysis of
longitudinal data on aging and mortality" by Yashin A. et al. (2007),
Mathematical Biosciences, 208(2), 538-551, <DOI:10.1016/j.mbs.2006.11.006>;
(iii) "Health decline, aging and mortality: how are they related?"
by Yashin A. et al. (2007),
Biogerontology 8(3), 291(302), <DOI:10.1007/s10522-006-9073-3>.
Author: I. Y. Zhbannikov, I. V. Akushevich, K. G. Arbeev, A. I. Yashin.
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between stpm versions 1.3.8 dated 2016-10-05 and 1.4.2 dated 2016-10-17
DESCRIPTION | 8 MD5 | 40 ++- NAMESPACE | 1 R/simdata_cont.R | 2 R/spm.impute.R |only R/spm_discrete.R | 2 R/spm_pobs.R | 6 README.md | 73 +++++++ inst/doc/stpm-vignette.R | 40 +-- inst/doc/stpm-vignette.Rmd | 40 +-- inst/doc/stpm-vignette.html | 446 ++++++++++++++++++++++---------------------- man/func1.Rd |only man/getNextY.Rd |only man/getNextY.cont.Rd |only man/getNextY.discr.Rd |only man/getNextY.discr.m.Rd |only man/getPrevY.discr.Rd |only man/getPrevY.discr.m.Rd |only man/m.Rd |only man/mu.Rd |only man/sigma_sq.Rd |only man/simdata_cont.Rd | 2 man/spm.impute.Rd |only man/spm_pobs.Rd | 5 src/simdataND.cpp | 1 src/spm_integral_MD.cpp | 50 +--- vignettes/stpm-vignette.Rmd | 40 +-- 27 files changed, 421 insertions(+), 335 deletions(-)
Title: Fitting Step-Functions
Description: Allows to fit step-functions to univariate serial data where neither the number of jumps nor their positions is known.
Author: Timo Aspelmeier [cre, aut],
Thomas Hotz [aut],
Hannes Sieling [aut],
Pein Florian [ctb]
Maintainer: Timo Aspelmeier <timo.aspelmeier@mathematik.uni-goettingen.de>
Diff between stepR versions 1.0-5.1 dated 2016-10-11 and 1.0-6 dated 2016-10-17
ChangeLog | 11 +++++++++++ DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- src/BinTree.h | 50 ++++++++++++++++++++++++++++---------------------- src/Bounds.cpp | 22 ++++++++++++++-------- src/Jump.h | 19 ++++++++++++------- src/Step.cpp | 1 + src/Step.h | 24 +++++++++++++++--------- src/StepBinom.cpp | 1 + src/StepGaussVar.cpp | 1 + src/StepPoisson.cpp | 1 + 11 files changed, 97 insertions(+), 59 deletions(-)
Title: Discrete Choice (Binary, Poisson and Ordered) Models with Random
Parameters
Description: An implementation of simulated maximum likelihood method for the
estimation of Binary (Probit and Logit), Ordered (Probit and Logit) and
Poisson models with random parameters for cross-sectional and longitudinal
data.
Author: Mauricio Sarrias <msarrias86@gmail.com>
Maintainer: Mauricio Sarrias <msarrias86@gmail.com>
Diff between Rchoice versions 0.3 dated 2015-04-29 and 0.3-1 dated 2016-10-17
DESCRIPTION | 16 ++++-- MD5 | 38 ++++++++------- NAMESPACE | 6 +- R/Rchoice.MakeDraws.R | 68 ++++++++++++++------------- R/Rchoice.R | 4 - R/Rchoice.logLiks.R | 11 +++- R/Rchoice.methods.R | 112 ++++++++++++++++++++++++++-------------------- R/Rchoice.modelform.R | 15 ++++-- README.md |only inst/CITATION |only inst/NEWS.Rd | 8 +++ man/AIC.Rchoice.Rd | 4 - man/Rchoice.Rd | 52 +++++++++++---------- man/bread.Rchoice.Rd | 17 ++++-- man/cov.Rchoice.Rd | 20 ++++---- man/effect.Rchoice.Rd | 4 - man/estfun.Rchoice.Rd | 13 +++-- man/getSummary.Rchoice.Rd | 13 ++--- man/plot.Rchoice.Rd | 7 ++ man/rFormula.Rd | 2 man/vcov.Rchoice.Rd | 2 21 files changed, 233 insertions(+), 179 deletions(-)
Title: Phylogenetic Linear Regression
Description: Provides functions for fitting phylogenetic linear models and phylogenetic generalized linear models. The computation uses an algorithm that is linear in the number of tips in the tree. The package also provides functions for simulating continuous or binary traits along the tree. Other tools include functions to test the adequacy of a population tree.
Author: Lam Si Tung Ho [aut, cre],
Cecile Ane [aut],
Robert Lachlan [ctb],
Kelsey Tarpinian [ctb],
Rachel Feldman [ctb],
Qing Yu [ctb]
Maintainer: Lam Si Tung Ho <lamho86@gmail.com>
Diff between phylolm versions 2.4 dated 2016-01-09 and 2.5 dated 2016-10-17
DESCRIPTION | 17 - MD5 | 22 + R/OU1d.R |only R/phyloglm.R | 11 R/phylolm.R | 357 ++++++++++++++++++++++++----- R/testingTreeWithQuartetCF.r | 15 + R/tools.R | 528 +++++++++++++++++++++---------------------- README.md | 8 man/OU1d.loglik.Rd |only man/phylolm-package.Rd | 6 man/phylolm.Rd | 35 ++ man/transf.branch.lengths.Rd | 180 +++++++------- tests |only 13 files changed, 740 insertions(+), 439 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for the analysis of multiple social networks are delivered with
this package. Among other things, it makes possible to create and manipulate multivariate
network data with different formats, and there are effective ways available to treat multiple
networks with routines that combine algebraic systems like the partially ordered semigroup or
the semiring structure together with the relational bundles occurring in different types of
multivariate network data sets. It also provides an algebraic approach for two-mode networks
through Galois derivations between families of the pairs of subsets in the two domains.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 2.2 dated 2016-10-12 and 2.3 dated 2016-10-17
DESCRIPTION | 8 +-- MD5 | 16 +++---- R/bnd.R | 7 ++- R/rel.sys.R | 90 +++++++++++++++++++++++------------------- inst/CHANGELOG | 5 +- inst/doc/TwoModeNetworks.Rnw | 2 inst/doc/TwoModeNetworks.r | 2 man/multiplex-package.Rd | 18 ++++---- vignettes/TwoModeNetworks.Rnw | 2 9 files changed, 83 insertions(+), 67 deletions(-)
Title: Implementation of 2D Correlation Analysis in R
Description: Implementation of two-dimensional (2D) correlation analysis based
on the Fourier-transformation approach described by Isao Noda (I. Noda
(1993) <DOI:10.1366/0003702934067694>). Additionally there are two plot
functions for the resulting correlation matrix: The first one creates
colored 2D plots, while the second one generates 3D plots.
Author: Robert Geitner [cre, aut],
Robby Fritzsch [aut],
Thomas Bocklitz [aut],
Juergen Popp [ctb, cph]
Maintainer: Robert Geitner <robert.geitner@uni-jena.de>
Diff between corr2D versions 0.1.10 dated 2016-07-26 and 0.1.11 dated 2016-10-17
DESCRIPTION | 10 ++-- MD5 | 18 ++++---- R/corr2d.R | 73 +++++++++++++++++++++++++++-------- R/corr2d_plot.R | 100 ++++++++++++++++++++++++++++++++++++++++++------- R/sim2ddata.R | 80 ++++++++++++++++++++++++++++++++++----- inst/doc/corr2D.html | 10 ++-- man/corr2d.Rd | 2 man/plot_corr2d.Rd | 3 - man/plot_corr2din3d.Rd | 2 man/sim2ddata.Rd | 21 +++++----- 10 files changed, 247 insertions(+), 72 deletions(-)
Title: Clinical Trial Design and Data Analysis Functions
Description: Utilities to make your clinical collaborations easier if not fun.
Author: Venkatraman E. Seshan
Maintainer: Venkatraman E. Seshan <seshanv@mskcc.org>
Diff between clinfun versions 1.0.11 dated 2015-08-11 and 1.0.12 dated 2016-10-17
CHANGES | 4 ++++ DESCRIPTION | 6 +++--- INDEX | 1 + MD5 | 12 +++++++----- NAMESPACE | 2 +- R/aucVardiTest.R |only man/aucVardiTest.Rd |only man/calogrank.Rd | 1 + 8 files changed, 17 insertions(+), 9 deletions(-)
Title: Some Tools for Imaging
Description: Some tools for (bio)imaging.
Author: Volker Schmid
Maintainer: Volker Schmid <stats@volkerschmid.de>
Diff between bioimagetools versions 0.3.0 dated 2016-10-14 and 0.3.1 dated 2016-10-17
DESCRIPTION | 9 +++++---- MD5 | 2 +- 2 files changed, 6 insertions(+), 5 deletions(-)
Title: Visualization and Imputation of Missing Values
Description: New tools for the visualization of missing and/or imputed values
are introduced, which can be used for exploring the data and the structure of
the missing and/or imputed values. Depending on this structure of the missing
values, the corresponding methods may help to identify the mechanism generating
the missing values and allows to explore the data including missing values.
In addition, the quality of imputation can be visually explored using various
univariate, bivariate, multiple and multivariate plot methods. A graphical user
interface available in the separate package VIMGUI allows an easy handling of
the implemented plot methods.
Author: Matthias Templ, Andreas Alfons, Alexander Kowarik, Bernd Prantner
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between VIM versions 4.5.0 dated 2016-06-29 and 4.6.0 dated 2016-10-17
VIM-4.5.0/VIM/src/Makevars |only VIM-4.5.0/VIM/src/Makevars.win |only VIM-4.6.0/VIM/DESCRIPTION | 31 +- VIM-4.6.0/VIM/MD5 | 100 +++---- VIM-4.6.0/VIM/NAMESPACE | 266 ++++++++++--------- VIM-4.6.0/VIM/NEWS | 2 VIM-4.6.0/VIM/R/VIM-package.R | 6 VIM-4.6.0/VIM/R/aggr.R | 20 - VIM-4.6.0/VIM/R/hotdeck.R | 149 ---------- VIM-4.6.0/VIM/R/irmi.R | 3 VIM-4.6.0/VIM/R/kNNFaster.R | 95 +++--- VIM-4.6.0/VIM/R/regressionImp.R | 140 +++++----- VIM-4.6.0/VIM/inst |only VIM-4.6.0/VIM/man/SBS5242.Rd | 60 ++-- VIM-4.6.0/VIM/man/VIM-package.Rd | 104 +++---- VIM-4.6.0/VIM/man/aggr.Rd | 436 ++++++++++++++++---------------- VIM-4.6.0/VIM/man/alphablend.Rd | 64 ++-- VIM-4.6.0/VIM/man/barMiss.Rd | 271 ++++++++++--------- VIM-4.6.0/VIM/man/bgmap.Rd | 84 +++--- VIM-4.6.0/VIM/man/chorizonDL.Rd | 186 ++++++------- VIM-4.6.0/VIM/man/colSequence.Rd | 152 +++++------ VIM-4.6.0/VIM/man/colormapMiss.Rd | 318 +++++++++++------------ VIM-4.6.0/VIM/man/countInf.Rd | 58 ++-- VIM-4.6.0/VIM/man/growdotMiss.Rd | 274 ++++++++++---------- VIM-4.6.0/VIM/man/histMiss.Rd | 280 ++++++++++---------- VIM-4.6.0/VIM/man/hotdeck.Rd | 136 +++++---- VIM-4.6.0/VIM/man/initialise.Rd | 84 +++--- VIM-4.6.0/VIM/man/irmi.Rd | 244 +++++++++-------- VIM-4.6.0/VIM/man/kNN.Rd | 195 +++++++------- VIM-4.6.0/VIM/man/kola.background.Rd | 48 +-- VIM-4.6.0/VIM/man/mapMiss.Rd | 176 ++++++------ VIM-4.6.0/VIM/man/marginmatrix.Rd | 154 +++++------ VIM-4.6.0/VIM/man/marginplot.Rd | 264 +++++++++---------- VIM-4.6.0/VIM/man/matrixplot.Rd | 246 +++++++++--------- VIM-4.6.0/VIM/man/mosaicMiss.Rd | 186 ++++++------- VIM-4.6.0/VIM/man/pairsVIM.Rd | 186 ++++++------- VIM-4.6.0/VIM/man/parcoordMiss.Rd | 296 ++++++++++----------- VIM-4.6.0/VIM/man/pbox.Rd | 252 +++++++++--------- VIM-4.6.0/VIM/man/prepare.Rd | 154 +++++------ VIM-4.6.0/VIM/man/print.summary.aggr.Rd | 60 ++-- VIM-4.6.0/VIM/man/regressionImp.Rd | 111 ++++---- VIM-4.6.0/VIM/man/rugNA.Rd | 132 ++++----- VIM-4.6.0/VIM/man/scattJitt.Rd | 208 +++++++-------- VIM-4.6.0/VIM/man/scattMiss.Rd | 236 ++++++++--------- VIM-4.6.0/VIM/man/scattmatrixMiss.Rd | 244 +++++++++-------- VIM-4.6.0/VIM/man/sleep.Rd | 60 ++-- VIM-4.6.0/VIM/man/spineMiss.Rd | 296 ++++++++++----------- VIM-4.6.0/VIM/man/tao.Rd | 62 ++-- VIM-4.6.0/VIM/man/testdata.Rd | 62 ++-- VIM-4.6.0/VIM/man/vmGUIenvir.Rd | 101 +++---- VIM-4.6.0/VIM/tests/test_data_frame.R |only VIM-4.6.0/VIM/tests/test_gowerDind.R | 2 VIM-4.6.0/VIM/tests/test_kNN.R | 2 53 files changed, 3639 insertions(+), 3657 deletions(-)
Title: Forecasting Using Smoothing Functions
Description: The set of smoothing functions used for time series analysis and in forecasting.
Currently the package includes exponential smoothing models and SARIMA in state-space
form + several simulation functions.
Author: Ivan Svetunkov [aut, cre] (Research Associate at Lancaster Centre for
Forecasting, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 1.4.4 dated 2016-09-20 and 1.4.5 dated 2016-10-17
DESCRIPTION | 10 MD5 | 86 +++---- NAMESPACE | 1 NEWS | 13 + R/RcppExports.R | 4 R/autoces.R | 32 +- R/autossarima.R | 50 ++-- R/ces.R | 6 R/es.R | 23 + R/ges.R | 8 R/methods.R | 25 +- R/simes.R | 78 +++--- R/sma.R | 6 R/ssarima.R | 223 +++++------------- R/ssfunctions.R | 127 ++++++++-- README.md | 4 inst/doc/ces.R | 8 inst/doc/ces.Rmd | 8 inst/doc/ces.html | 66 ++--- inst/doc/es.R | 2 inst/doc/es.Rmd | 2 inst/doc/es.html | 59 ++-- inst/doc/ges.html | 10 inst/doc/simulate.html | 14 - inst/doc/sma.html | 6 inst/doc/smooth-Documentation.pdf |binary inst/doc/smooth.html | 4 inst/doc/ssarima.html | 64 +++-- man/autoces.Rd | 29 +- man/autossarima.Rd | 27 +- man/ces.Rd | 43 +-- man/es.Rd | 40 +-- man/forecastSmooth.Rd | 7 man/ges.Rd | 35 +- man/sma.Rd | 31 +- man/ssarima.Rd | 34 +- src/RcppExports.cpp | 36 +++ src/ssgeneralfun.cpp | 455 +++++++++++++++++++++++++++++++++++--- tests/testthat/test_ces.R | 2 tests/testthat/test_es.R | 2 tests/testthat/test_ges.R | 2 tests/testthat/test_ssarima.R | 2 vignettes/ces.Rmd | 8 vignettes/es.Rmd | 2 44 files changed, 1082 insertions(+), 612 deletions(-)
Title: A Tool to Associate FASTA Sequences and Features
Description: Provides user friendly methods for the identification of sequence patterns that are statistically significantly associated with a property of the sequence. For instance, SeqFeatR allows to identify viral immune escape mutations for hosts of given HLA types. The underlying statistical method is Fisher's exact test, with appropriate corrections for multiple testing, or Bayes. Patterns may be point mutations or n-tuple of mutations. SeqFeatR offers several ways to visualize the results of the statistical analyses.
Author: Bettina Budeus
Maintainer: Bettina Budeus <bettina.budeus@stud.uni-due.de>
Diff between SeqFeatR versions 0.2.3 dated 2016-05-25 and 0.2.4 dated 2016-10-17
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NEWS | 5 +++++ inst/CITATION |only inst/doc/SeqFeatR_tutorial.pdf |binary 5 files changed, 13 insertions(+), 7 deletions(-)
Title: Non-Negative Matrix Factorization (NMF) using CUDA
Description: Wrapper package for the nmfgpu library, which implements several
Non-negative Matrix Factorization (NMF) algorithms for CUDA platforms.
By using the acceleration of GPGPU computing, the NMF can be used for
real-world problems inside the R environment. All CUDA devices starting with
Kepler architecture are supported by the library.
Author: Sven Koitka [aut, cre, cph],
Christoph M. Friedrich [ctb]
Maintainer: Sven Koitka <sven.koitka@fh-dortmund.de>
Diff between nmfgpu4R versions 0.2.5.1 dated 2016-07-10 and 0.2.5.2 dated 2016-10-17
DESCRIPTION | 10 ++++++---- MD5 | 20 ++++++++++---------- R/helper.R | 2 +- R/nmfgpu.R | 2 +- R/nmfgpu4R.R | 2 +- src/Helper.cpp | 2 +- src/Helper.h | 4 ++-- src/WrapperNMFGPU.cpp | 2 +- src/WrapperNMFGPU.h | 2 +- src/nmfgpu.h | 2 +- src/nmfgpu4R.cpp | 2 +- 11 files changed, 26 insertions(+), 24 deletions(-)
Title: Genome Structure Rearrangement Calling in Genomes with High
Synteny
Description: Pipeline to read and analyze raw SNP array data.
The data is preprocessed and normalized.
Genotypes and CNVs are called.
Synteny blocks are calculated and translocations detected.
The results can be plotted with special functions.
Author: Fabian Grandke [cre, aut],
Birgit Samans [aut]
Maintainer: Fabian Grandke <grafabian@gmail.com>
Diff between gsrc versions 1.0.1 dated 2016-06-05 and 1.1 dated 2016-10-17
gsrc-1.0.1/gsrc/inst/doc/synteny_blocks.R |only gsrc-1.0.1/gsrc/inst/doc/synteny_blocks.Rmd |only gsrc-1.0.1/gsrc/inst/doc/synteny_blocks.html |only gsrc-1.0.1/gsrc/inst/extdata |only gsrc-1.0.1/gsrc/vignettes/synteny_blocks.Rmd |only gsrc-1.1/gsrc/DESCRIPTION | 14 gsrc-1.1/gsrc/MD5 | 77 - gsrc-1.1/gsrc/NAMESPACE | 4 gsrc-1.1/gsrc/NEWS |only gsrc-1.1/gsrc/R/filter.R | 151 +- gsrc-1.1/gsrc/R/plot.R | 588 ++++++---- gsrc-1.1/gsrc/R/preprocess.R | 77 - gsrc-1.1/gsrc/R/process.R | 301 +++-- gsrc-1.1/gsrc/R/raw.R | 157 +- gsrc-1.1/gsrc/R/synteny.R | 270 ++-- gsrc-1.1/gsrc/R/tools.R | 155 +- gsrc-1.1/gsrc/build/vignette.rds |binary gsrc-1.1/gsrc/inst/CITATION |only gsrc-1.1/gsrc/inst/doc/introduction.R | 80 - gsrc-1.1/gsrc/inst/doc/introduction.Rmd | 281 ++-- gsrc-1.1/gsrc/inst/doc/introduction.html | 419 ++++--- gsrc-1.1/gsrc/inst/doc/synteny.R |only gsrc-1.1/gsrc/inst/doc/synteny.Rmd |only gsrc-1.1/gsrc/inst/doc/synteny.html |only gsrc-1.1/gsrc/man/filter_cnv.Rd |only gsrc-1.1/gsrc/man/intens_theta.Rd | 2 gsrc-1.1/gsrc/man/plot_cnv.Rd |only gsrc-1.1/gsrc/man/plot_trans_locations.Rd | 2 gsrc-1.1/gsrc/man/read_intensities.Rd | 3 gsrc-1.1/gsrc/man/read_sample_sheets.Rd | 7 gsrc-1.1/gsrc/man/trans_location.Rd | 11 gsrc-1.1/gsrc/tests |only gsrc-1.1/gsrc/vignettes/brassica_synteny_filtered.rda |only gsrc-1.1/gsrc/vignettes/cotton_synteny_filtered.rda |only gsrc-1.1/gsrc/vignettes/introduction.Rmd | 281 ++-- gsrc-1.1/gsrc/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png |only gsrc-1.1/gsrc/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png |only gsrc-1.1/gsrc/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png |only gsrc-1.1/gsrc/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png |only gsrc-1.1/gsrc/vignettes/introduction_files/figure-html/unnamed-chunk-25-1.png |binary gsrc-1.1/gsrc/vignettes/introduction_files/figure-html/unnamed-chunk-28-1.png |binary gsrc-1.1/gsrc/vignettes/introduction_files/figure-html/unnamed-chunk-31-1.png |only gsrc-1.1/gsrc/vignettes/introduction_files/figure-html/unnamed-chunk-32-1.png |only gsrc-1.1/gsrc/vignettes/introduction_files/figure-html/unnamed-chunk-33-1.png |only gsrc-1.1/gsrc/vignettes/synteny.Rmd |only 45 files changed, 1743 insertions(+), 1137 deletions(-)
Title: Hierarchical Modelling of Faecal Egg Counts
Description: An implementation of hierarchical models
for faecal egg count data to assess anthelmintic
efficacy. Bayesian inference is done via MCMC sampling using Stan.
Author: Craig Wang [cre, aut],
Michaela Paul [aut],
Reinhard Furrer [ctb],
Trustees of Columbia University [cph] (rstanarm)
Maintainer: Craig Wang <craig.wang@uzh.ch>
Diff between eggCounts versions 1.1-1 dated 2016-07-29 and 1.1-2 dated 2016-10-17
DESCRIPTION | 15 +++--- MD5 | 17 +++---- NAMESPACE | 2 inst/NEWS | 8 ++- man/eggCounts-package.Rd | 6 +- man/fec_stan.Rd | 6 +- man/fecr_stan.Rd | 4 - src/Makevars.win |only src/include/models.hpp | 114 ++++++++++++++++++++++++++++++++++++++++++++--- tests/test.R | 4 - 10 files changed, 142 insertions(+), 34 deletions(-)
Title: Bayesian Analysis of Heterogeneous Treatment Effect
Description: It is vital to assess the heterogeneity of treatment effects
(HTE) when making health care decisions for an individual patient or a group
of patients. Nevertheless, it remains challenging to evaluate HTE based
on information collected from clinical studies that are often designed and
conducted to evaluate the efficacy of a treatment for the overall population.
The Bayesian framework offers a principled and flexible approach to estimate
and compare treatment effects across subgroups of patients defined by their
characteristics. This package allows users to explore a wide range of Bayesian
HTE analysis models, and produce posterior inferences about HTE.
Author: Chenguang Wang [aut, cre],
Ravi Varadhan [aut],
Trustees of Columbia University [cph] (tools/make_cpp.R, R/stanmodels.R)
Maintainer: Chenguang Wang <cwang68@jhmi.edu>
Diff between beanz versions 1.6 dated 2016-07-29 and 1.7 dated 2016-10-17
DESCRIPTION | 6 - MD5 | 31 ++--- NAMESPACE | 1 R/beanz_present.R | 60 ++++++++++ R/beanz_stan.R | 1 exec/bs.stan | 29 +++-- exec/ds.stan | 19 ++- exec/eds.stan | 22 ++- exec/srs.stan | 21 ++- inst/doc/beanz_vignettes.R | 7 + inst/doc/beanz_vignettes.Rmd | 13 ++ inst/doc/beanz_vignettes.html | 179 +++++++++++++++++-------------- inst/shiny/beanz_ui.R | 85 ++++++++++++-- inst/shiny/server.R | 10 + man/r.pred.subgrp.effect.Rd |only src/include/models.hpp | 240 +++++++++++++++++++++++++++++++++--------- vignettes/beanz_vignettes.Rmd | 13 ++ 17 files changed, 551 insertions(+), 186 deletions(-)
Title: R Interface to the Vowpal Wabbit
Description: The 'Vowpal Wabbit' project is a fast out-of-core learning
system sponsored by Microsoft Research (having started at Yahoo! Research)
and written by John Langford along with a number of contributors. This R
package does not include the distributed computing implementation of the
cluster/ directory of the upstream sources. Use of the software as a network
service is also not directly supported as the aim is a simpler direct call
from R for validation and comparison.
Author: Dirk Eddelbuettel <edd@debian.org>
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RVowpalWabbit versions 0.0.7 dated 2016-07-17 and 0.0.8 dated 2016-10-17
ChangeLog | 8 ++++++++ DESCRIPTION | 9 +++++---- MD5 | 12 ++++++------ README.md | 2 +- tests/test2.r | 2 +- tests/test6.r | 2 +- tests/test8.r | 2 +- 7 files changed, 23 insertions(+), 14 deletions(-)
Title: An API Client for Wikimedia Traffic Data
Description: Pageview data from the 'Wikimedia' sites, such as
'Wikipedia' <https://www.wikipedia.org/>, from entire projects to per-article
levels of granularity, through the new RESTful API and data source <https://
wikimedia.org/api/rest_v1/?doc>.
Author: Oliver Keyes [aut, cre], Jeremiah Lewis [ctb]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between pageviews versions 0.2.0 dated 2016-01-14 and 0.3.0 dated 2016-10-17
DESCRIPTION | 18 +-- MD5 | 36 +++---- NAMESPACE | 2 NEWS | 12 ++ R/pageviews.R | 1 R/query.R | 134 ++++++++++------------------ R/timestamps.R | 45 ++++----- R/utils.R | 90 ++++++++++++++++-- README.md | 8 + build/vignette.rds |binary inst/doc/Accessing_Wikimedia_pageviews.R | 39 +------- inst/doc/Accessing_Wikimedia_pageviews.Rmd | 48 ++-------- inst/doc/Accessing_Wikimedia_pageviews.html | 126 +++++++++++++++----------- man/article_pageviews.Rd | 4 man/pageview_timestamps.Rd | 7 + man/project_pageviews.Rd | 4 man/top_articles.Rd | 16 +-- tests/testthat/test.R | 88 +++++++++++++++++- vignettes/Accessing_Wikimedia_pageviews.Rmd | 48 ++-------- 19 files changed, 405 insertions(+), 321 deletions(-)
Title: Irucka Embry's Miscellaneous Functions
Description: A collection of Irucka Embry's miscellaneous functions
(Engineering Economics, Civil & Environmental/Water Resources Engineering,
Geometry, Statistics, GNU Octave length functions, Trigonometric functions
in degrees, etc.).
Author: Irucka Embry [aut, cre], Felix Andrews [aut, ctb] (zoo), Hans Werner
Borchers [aut, ctb] (pracma), Samit Basu [aut, ctb] (FreeMat)
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between iemisc versions 0.9.5 dated 2016-08-04 and 0.9.6 dated 2016-10-17
iemisc-0.9.5/iemisc/inst/doc/Open-Channel-Flow_Examples.R |only iemisc-0.9.5/iemisc/inst/doc/Open-Channel-Flow_Examples.Rmd |only iemisc-0.9.5/iemisc/inst/doc/Open-Channel-Flow_Examples.html |only iemisc-0.9.5/iemisc/vignettes/Open-Channel-Flow_Examples.Rmd |only iemisc-0.9.6/iemisc/DESCRIPTION | 18 ++--- iemisc-0.9.6/iemisc/MD5 | 36 +++++----- iemisc-0.9.6/iemisc/NAMESPACE | 6 + iemisc-0.9.6/iemisc/NEWS.md | 11 ++- iemisc-0.9.6/iemisc/R/Manningcirc.R | 2 iemisc-0.9.6/iemisc/R/Manningrect.R | 4 - iemisc-0.9.6/iemisc/R/Manningtrap.R | 4 - iemisc-0.9.6/iemisc/R/Manningtri.R | 2 iemisc-0.9.6/iemisc/R/concr_mix_normal_strength.R |only iemisc-0.9.6/iemisc/R/iemisc.R | 13 +-- iemisc-0.9.6/iemisc/R/size.R | 8 +- iemisc-0.9.6/iemisc/README.md | 2 iemisc-0.9.6/iemisc/build/vignette.rds |binary iemisc-0.9.6/iemisc/inst/doc/Open-Channel-Flow_Examples_Geometric_Shapes.R |only iemisc-0.9.6/iemisc/inst/doc/Open-Channel-Flow_Examples_Geometric_Shapes.Rmd |only iemisc-0.9.6/iemisc/inst/doc/Open-Channel-Flow_Examples_Geometric_Shapes.html |only iemisc-0.9.6/iemisc/man/concr_mix_normal_strength.Rd |only iemisc-0.9.6/iemisc/man/iemisc.Rd | 9 +- iemisc-0.9.6/iemisc/man/size.Rd | 1 iemisc-0.9.6/iemisc/vignettes/Open-Channel-Flow_Examples_Geometric_Shapes.Rmd |only 24 files changed, 71 insertions(+), 45 deletions(-)
Title: Graphical Independence Networks
Description: Probability propagation in graphical independence networks, also
known as Bayesian networks or probabilistic expert systems.
Author: Søren Højsgaard <sorenh@math.aau.dk>
Maintainer: Søren Højsgaard <sorenh@math.aau.dk>
Diff between gRain versions 1.2-5 dated 2015-12-30 and 1.3-0 dated 2016-10-17
gRain-1.2-5/gRain/R/cptable.R |only gRain-1.2-5/gRain/man/andtable.Rd |only gRain-1.2-5/gRain/man/compile.grain.Rd |only gRain-1.2-5/gRain/man/compileCPT.Rd |only gRain-1.2-5/gRain/man/extractCPT.Rd |only gRain-1.2-5/gRain/man/gRain-package.Rd |only gRain-1.2-5/gRain/man/grain.Rd |only gRain-1.2-5/gRain/man/loadSaveHuginNet.Rd |only gRain-1.2-5/gRain/man/predict.Rd |only gRain-1.2-5/gRain/man/propagate.grain.Rd |only gRain-1.2-5/gRain/man/simulate.Rd |only gRain-1.3-0/gRain/ChangeLog | 656 +++++++++---------- gRain-1.3-0/gRain/DESCRIPTION | 20 gRain-1.3-0/gRain/MD5 | 94 +- gRain-1.3-0/gRain/NAMESPACE | 138 ++-- gRain-1.3-0/gRain/R/CPT-POT-compile.R | 391 ++++++----- gRain-1.3-0/gRain/R/CPT-POT-extract.R | 300 +++++--- gRain-1.3-0/gRain/R/Generics.R | 51 + gRain-1.3-0/gRain/R/cptable-create.R |only gRain-1.3-0/gRain/R/cptable-special.R |only gRain-1.3-0/gRain/R/display.R | 140 ++-- gRain-1.3-0/gRain/R/evi.R |only gRain-1.3-0/gRain/R/evidence-func.R |only gRain-1.3-0/gRain/R/evidence-joint.R |only gRain-1.3-0/gRain/R/evidence.R | 969 ++++++++++++----------------- gRain-1.3-0/gRain/R/finding.R | 713 +++++++++++---------- gRain-1.3-0/gRain/R/gRain-package.R |only gRain-1.3-0/gRain/R/grain-compile.R | 284 ++++---- gRain-1.3-0/gRain/R/grain-main.R | 374 +++++++---- gRain-1.3-0/gRain/R/grain-simulate.R | 225 +++--- gRain-1.3-0/gRain/R/grain-utilities.R | 287 ++++---- gRain-1.3-0/gRain/R/loadSaveHuginNet.R | 912 ++++++++++++++------------- gRain-1.3-0/gRain/R/potentialList.R | 132 +-- gRain-1.3-0/gRain/R/predict.R | 169 ++--- gRain-1.3-0/gRain/R/propagate.R | 312 +++++---- gRain-1.3-0/gRain/R/querygrain.R | 405 +++++++----- gRain-1.3-0/gRain/R/repeatPattern.R | 129 ++- gRain-1.3-0/gRain/R/summary.R | 96 +- gRain-1.3-0/gRain/R/update.R | 127 ++- gRain-1.3-0/gRain/R/zzz.R | 32 gRain-1.3-0/gRain/build/vignette.rds |binary gRain-1.3-0/gRain/inst/CITATION | 38 - gRain-1.3-0/gRain/inst/doc/gRain-intro.pdf |binary gRain-1.3-0/gRain/man/compile-cpt.Rd |only gRain-1.3-0/gRain/man/cptable.Rd | 188 ++--- gRain-1.3-0/gRain/man/evidence-object.Rd |only gRain-1.3-0/gRain/man/extract-cpt.Rd |only gRain-1.3-0/gRain/man/finding.Rd | 204 ++---- gRain-1.3-0/gRain/man/grain-compile.Rd |only gRain-1.3-0/gRain/man/grain-evi.Rd |only gRain-1.3-0/gRain/man/grain-evidence.Rd |only gRain-1.3-0/gRain/man/grain-generics.Rd |only gRain-1.3-0/gRain/man/grain-main.Rd |only gRain-1.3-0/gRain/man/grain-predict.Rd |only gRain-1.3-0/gRain/man/grain-propagate.Rd |only gRain-1.3-0/gRain/man/grain-simulate.Rd |only gRain-1.3-0/gRain/man/internal-gRain.Rd | 95 +- gRain-1.3-0/gRain/man/load-save-hugin.Rd |only gRain-1.3-0/gRain/man/logical.Rd |only gRain-1.3-0/gRain/man/mendel.Rd |only gRain-1.3-0/gRain/man/querygrain.Rd | 255 +++---- gRain-1.3-0/gRain/man/repeatPattern.Rd | 149 +--- gRain-1.3-0/gRain/man/set-jevidence.Rd |only gRain-1.3-0/gRain/man/update.CPTgrain.Rd | 141 +--- 64 files changed, 4303 insertions(+), 3723 deletions(-)
Title: Fine-Scale Population Analysis
Description: Statistical tool set for population genetics. The package provides empirical Bayes estimator of Fst, Nei's Gst, and Weir & Cockerham's theta adapted for pairwise comparison. It also provides interfaces to read and manipulate 'GENEPOP' format data files.
Author: Reiichiro Nakamichi, Hirohisa Kishino, Shuichi Kitada
Maintainer: Reiichiro Nakamichi <nakamichi@affrc.go.jp>
Diff between FinePop versions 1.0.1 dated 2016-09-08 and 1.1.1 dated 2016-10-17
FinePop-1.0.1/FinePop/R/clip.genepop.maf.R |only FinePop-1.0.1/FinePop/R/clip.genepop.name.R |only FinePop-1.0.1/FinePop/man/clip.genepop.maf.Rd |only FinePop-1.0.1/FinePop/man/clip.genepop.name.Rd |only FinePop-1.1.1/FinePop/DESCRIPTION | 10 +++---- FinePop-1.1.1/FinePop/MD5 | 28 +++++++++++---------- FinePop-1.1.1/FinePop/NAMESPACE | 2 - FinePop-1.1.1/FinePop/R/EBFST.R | 2 - FinePop-1.1.1/FinePop/R/GstN.R |only FinePop-1.1.1/FinePop/R/clip.genepop.R |only FinePop-1.1.1/FinePop/R/read.genepop.R | 9 ++++++- FinePop-1.1.1/FinePop/R/thetaWC.pair.R |only FinePop-1.1.1/FinePop/build/partial.rdb |binary FinePop-1.1.1/FinePop/man/EBFST.Rd | 32 +++++++++++-------------- FinePop-1.1.1/FinePop/man/FinePop-package.Rd | 6 +++- FinePop-1.1.1/FinePop/man/GstN.Rd |only FinePop-1.1.1/FinePop/man/clip.genepop.Rd |only FinePop-1.1.1/FinePop/man/data.JSM.Rd | 8 +++--- FinePop-1.1.1/FinePop/man/read.genepop.Rd | 19 ++++++++++---- FinePop-1.1.1/FinePop/man/thetaWC.pair.Rd |only 20 files changed, 68 insertions(+), 48 deletions(-)
Title: A Tool to Downsize Large Workflows for Testing
Description: Toggles the test and production versions of a large workflow.
Author: William Landau [aut, cre]
Maintainer: William Landau <will.landau@gmail.com>
Diff between downsize versions 0.2.0 dated 2016-10-14 and 0.2.1 dated 2016-10-17
downsize-0.2.0/downsize/man/check_downsized.Rd |only downsize-0.2.0/downsize/tests/testthat/test-check_downsized.R |only downsize-0.2.1/downsize/DESCRIPTION | 8 +- downsize-0.2.1/downsize/MD5 | 34 ++++------ downsize-0.2.1/downsize/NAMESPACE | 2 downsize-0.2.1/downsize/R/namespace.R | 2 downsize-0.2.1/downsize/R/ui.R | 31 +++++---- downsize-0.2.1/downsize/R/utils.R | 15 ---- downsize-0.2.1/downsize/inst/doc/downsize.Rmd | 4 - downsize-0.2.1/downsize/inst/doc/downsize.html | 7 -- downsize-0.2.1/downsize/man/downsize.Rd | 13 ++- downsize-0.2.1/downsize/man/my_mode.Rd | 2 downsize-0.2.1/downsize/man/production_mode.Rd | 3 downsize-0.2.1/downsize/man/test_mode.Rd | 3 downsize-0.2.1/downsize/tests/testthat/test-check_args.R | 5 - downsize-0.2.1/downsize/tests/testthat/test-downsize.R | 16 +++- downsize-0.2.1/downsize/tests/testthat/test-ds.R | 1 downsize-0.2.1/downsize/tests/testthat/test-make_small.R | 3 downsize-0.2.1/downsize/vignettes/downsize.Rmd | 4 - 19 files changed, 72 insertions(+), 81 deletions(-)
Title: Censored Spatial Models
Description: It fits linear regression models for censored spatial data. It provides different estimation methods as the SAEM (Stochastic Approximation of Expectation Maximization) algorithm and seminaive that uses Kriging prediction to estimate the response at censored locations and predict new values at unknown locations. It also offers graphical tools for assessing the fitted model.
Author: Alejandro Ordonez, Christian E. Galarza, Victor H. Lachos
Maintainer: Alejandro Ordonez <ordonezjosealejandro@gmail.com>
Diff between CensSpatial versions 1.0 dated 2016-10-08 and 1.1 dated 2016-10-17
DESCRIPTION | 8 ++-- MD5 | 26 +++++++------- NAMESPACE | 2 + R/Seminaivefin.R | 12 +++--- R/predgraphicsfin.R | 26 ++++++++------ R/predgraphicsprin.R | 48 +++++++++------------------ data/depth.rda |only man/algnaive12.Rd | 4 +- man/depth.Rd |only man/derivQfun.Rd | 14 ++++--- man/localinfmeas.Rd | 18 ++++++---- man/predSCL.Rd | 9 ++--- man/predgraphics.Rd | 90 +++++++++++++++++++-------------------------------- man/rspacens.Rd | 2 - man/seminaive_1.Rd | 8 ++-- 15 files changed, 123 insertions(+), 144 deletions(-)