Title: Visualization and Imputation of Missing Values - Graphical User
Interface
Description: A graphical user interface for the methods implemented in the
package VIM. It allows an easy handling of the
implemented plot and imputation methods.
Author: Daniel Schopfhauser, Matthias Templ, Andreas Alfons, Alexander Kowarik,
Bernd Prantner
Maintainer: Alexander Kowarik <alexander.kowarik@statistik.gv.at>
Diff between VIMGUI versions 0.9.0 dated 2013-10-11 and 0.10.0 dated 2016-10-18
VIMGUI-0.10.0/VIMGUI/DESCRIPTION | 29 VIMGUI-0.10.0/VIMGUI/MD5 | 199 VIMGUI-0.10.0/VIMGUI/NAMESPACE | 54 VIMGUI-0.10.0/VIMGUI/R/TKRaggr.R | 3 VIMGUI-0.10.0/VIMGUI/R/TKRmarginmatrix.R | 7 VIMGUI-0.10.0/VIMGUI/R/TKRmatrixplot.R | 3 VIMGUI-0.10.0/VIMGUI/R/TKRparcoordMiss.R | 8 VIMGUI-0.10.0/VIMGUI/R/TKRpbox.R | 3 VIMGUI-0.10.0/VIMGUI/R/TKRscattmatrixMiss.R | 7 VIMGUI-0.10.0/VIMGUI/R/VIMGUI.R | 6 VIMGUI-0.10.0/VIMGUI/R/vmGUImenu.R | 3 VIMGUI-0.10.0/VIMGUI/R/zzz.R | 5 VIMGUI-0.10.0/VIMGUI/README | 8 VIMGUI-0.10.0/VIMGUI/build |only VIMGUI-0.10.0/VIMGUI/inst/CITATION |only VIMGUI-0.10.0/VIMGUI/inst/doc/VIM-Imputation.pdf | 7903 ++++++------- VIMGUI-0.10.0/VIMGUI/man/TKRaggr.Rd | 193 VIMGUI-0.10.0/VIMGUI/man/TKRmarginmatrix.Rd | 137 VIMGUI-0.10.0/VIMGUI/man/TKRmatrixplot.Rd | 146 VIMGUI-0.10.0/VIMGUI/man/TKRparcoordMiss.Rd | 247 VIMGUI-0.10.0/VIMGUI/man/TKRpbox.Rd | 149 VIMGUI-0.10.0/VIMGUI/man/TKRscattmatrixMiss.Rd | 193 VIMGUI-0.10.0/VIMGUI/man/VIMGUI.Rd | 23 VIMGUI-0.10.0/VIMGUI/man/vmGUImenu.Rd | 107 VIMGUI-0.10.0/VIMGUI/vignettes/fig-growdot-chorizon_Ca.pdf |binary VIMGUI-0.10.0/VIMGUI/vignettes/fig-marginmatrix-tao.pdf |binary VIMGUI-0.10.0/VIMGUI/vignettes/fig-scattmatrix-tao.pdf |binary VIMGUI-0.9.0/VIMGUI/inst/doc/VIM-EU-SILC.R |only VIMGUI-0.9.0/VIMGUI/inst/doc/VIM-EU-SILC.Rnw |only VIMGUI-0.9.0/VIMGUI/inst/doc/VIM-EU-SILC.pdf |only VIMGUI-0.9.0/VIMGUI/inst/tklibs |only VIMGUI-0.9.0/VIMGUI/vignettes/Thumbs.db |only VIMGUI-0.9.0/VIMGUI/vignettes/VIM-EU-SILC.Rnw |only VIMGUI-0.9.0/VIMGUI/vignettes/VIM-EU-SILC.bib |only VIMGUI-0.9.0/VIMGUI/vignettes/fig-aggr.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/fig-margin.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/fig-matrix.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/fig-parallel.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/fig-spine.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/screenshot1.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/screenshot2.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/screenshot3.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/screenshot4.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/screenshot5.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/screenshot6.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/screenshot7.pdf |only VIMGUI-0.9.0/VIMGUI/vignettes/screenshot8.pdf |only 47 files changed, 4876 insertions(+), 4557 deletions(-)
Title: A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets
Description: Creates visualizations of intersecting sets using a novel matrix
design, along with visualizations of several common set, element and attribute
related tasks.
Author: Jake Conway [cre],
Nils Gehlenborg [aut]
Maintainer: Jake Conway <jake_conway@student.uml.edu>
Diff between UpSetR versions 1.2.4 dated 2016-09-02 and 1.3.0 dated 2016-10-18
DESCRIPTION | 8 +++--- MD5 | 48 +++++++++++++++++++-------------------- NEWS | 8 ++++++ R/MainBar.R | 19 ++++++++++++--- R/Matrix.R | 11 +++++++- R/SizeBar.R | 16 ++++++++++--- R/upset.R | 14 ++++++----- README.md | 8 +++--- inst/doc/attribute.plots.R | 10 ++++---- inst/doc/attribute.plots.Rmd | 10 ++++---- inst/doc/attribute.plots.html | 10 ++++---- inst/doc/basic.usage.R | 20 ++++++++-------- inst/doc/basic.usage.Rmd | 22 ++++++++--------- inst/doc/basic.usage.html | 25 ++++++++++---------- inst/doc/queries.R | 10 ++++---- inst/doc/queries.Rmd | 10 ++++---- inst/doc/queries.html | 10 ++++---- inst/doc/set.metadata.plots.R | 18 +++++++------- inst/doc/set.metadata.plots.Rmd | 18 +++++++------- inst/doc/set.metadata.plots.html | 38 +++++++++++++++--------------- man/upset.Rd | 18 ++++++++------ vignettes/attribute.plots.Rmd | 10 ++++---- vignettes/basic.usage.Rmd | 22 ++++++++--------- vignettes/queries.Rmd | 10 ++++---- vignettes/set.metadata.plots.Rmd | 18 +++++++------- 25 files changed, 227 insertions(+), 184 deletions(-)
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner <gregor.kastner@wu.ac.at>
Diff between stochvol versions 1.3.0 dated 2016-08-24 and 1.3.1 dated 2016-10-18
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS | 14 +++++++++++++- R/wrappers.R | 12 +++++++++--- inst/CITATION | 8 ++++---- inst/doc/article.pdf |binary inst/doc/heavytails.pdf |binary src/progutils.cpp | 9 ++++----- src/progutils.h | 2 +- src/sampler.cpp | 40 ++++++++++++++++++++++++++++++++-------- 10 files changed, 75 insertions(+), 34 deletions(-)
Title: Wrapper for the 'Intro.js' Library
Description: A wrapper for the 'Intro.js' library (For more info: <http://www.introjs.com>).
This package makes it easy to include step-by-step introductions, and clickable hints in a 'Shiny'
application. It supports both static introductions in the UI, and programmatic introductions from
the server-side.
Author: Carl Ganz [aut, cre],
Afshin Mehrabani [ctb, cph] (intro.js in javascript/introjs)
Maintainer: Carl Ganz <carlganz@gmail.com>
Diff between rintrojs versions 0.1.0 dated 2016-09-01 and 0.1.1 dated 2016-10-18
DESCRIPTION | 12 +++---- MD5 | 14 ++++---- NEWS.md |only R/introjs.R | 21 ++++++++++-- README.md | 53 ++++++++++++++++++++++++++++---- inst/CITATION |only inst/javascript/introjs/introjs.min.css | 2 - inst/javascript/rintro.js | 33 +++++++++++++------ man/introjs.Rd | 2 - 9 files changed, 102 insertions(+), 35 deletions(-)
Title: Distributions to be Used for GAMLSS Modelling
Description: The different distributions used for the response variables in GAMLSS
modelling.
Author: Mikis Stasinopoulos <mikis.stasinopoulos@gamlss.org>, Bob
Rigby with contributions from
Calliope Akantziliotou, Gillian Heller, Raydonal Ospina
<rospina@ime.usp.br>, Nicoletta Motpan, Fiona McElduff, Vlasios
Voudouris, Majid Djennad, Marco Enea and Alexios Ghalanos.
Maintainer: Mikis Stasinopoulos <mikis.stasinopoulos@gamlss.org>
Diff between gamlss.dist versions 4.3-6 dated 2016-05-18 and 5.0-0 dated 2016-10-18
DESCRIPTION | 14 - MD5 | 92 +++++------ NAMESPACE | 3 R/DELAPORT.R | 2 R/EGB2.R | 350 +++++++++++++++++++++---------------------- R/GB2.R | 366 ++++++++++++++++++++++----------------------- R/NBF.R |only R/PIG.R | 2 R/SI.R | 2 R/SICHEL-10-09-12.R | 2 man/BB.Rd | 2 man/BCCG.Rd | 2 man/EGB2.Rd | 4 man/EXP.Rd | 4 man/GA.Rd | 2 man/GB1.Rd | 2 man/GB2.Rd | 4 man/GE.Rd | 2 man/GG.Rd | 2 man/GIG.Rd | 4 man/GT.Rd | 2 man/GU.rd | 2 man/JSUoriginal.Rd | 2 man/LG.Rd | 2 man/LOGISTIC.Rd | 156 +++++++++---------- man/NBF.Rd |only man/NBI.Rd | 162 +++++++++---------- man/NBII.Rd | 2 man/PE.Rd | 2 man/PO.Rd | 2 man/RG.Rd | 2 man/RGE.Rd | 2 man/SEP.Rd | 2 man/SEP1.Rd | 2 man/SHASH.Rd | 2 man/TF.Rd | 2 man/WEI.Rd | 2 man/WEI2.Rd | 2 man/WEI3.Rd | 2 man/ZABB.Rd | 2 man/ZANBI.Rd | 3 man/ZAP.Rd | 3 man/ZIP.Rd | 2 man/ZIPIG.Rd | 2 man/gamlss.dist.package.Rd | 4 man/gamlss.family.Rd | 2 man/gen.Family.Rd | 2 man/hazardFun.Rd | 2 48 files changed, 617 insertions(+), 616 deletions(-)
Title: GAMLSS Data
Description: Data for GAMLSS models.
Author: Mikis Stasinopoulos <mikis.stasinopoulos@gamlss.org>, Bob
Rigby
Maintainer: Mikis Stasinopoulos <mikis.stasinopoulos@gamlss.org>
Diff between gamlss.data versions 4.3-4 dated 2016-05-18 and 5.0-0 dated 2016-10-18
gamlss.data-4.3-4/gamlss.data/data/film90.rda |only gamlss.data-4.3-4/gamlss.data/data/leukemia.RData |only gamlss.data-5.0-0/gamlss.data/DESCRIPTION | 14 +- gamlss.data-5.0-0/gamlss.data/MD5 | 88 +++++++++--------- gamlss.data-5.0-0/gamlss.data/data/CD4.rda |binary gamlss.data-5.0-0/gamlss.data/data/LGAclaims.rda |binary gamlss.data-5.0-0/gamlss.data/data/Leukemia.RData |only gamlss.data-5.0-0/gamlss.data/data/Mums.rda |binary gamlss.data-5.0-0/gamlss.data/data/VictimsOfCrime.rda |binary gamlss.data-5.0-0/gamlss.data/data/acidity.rda |binary gamlss.data-5.0-0/gamlss.data/data/aep.rda |binary gamlss.data-5.0-0/gamlss.data/data/aids.rda |binary gamlss.data-5.0-0/gamlss.data/data/alveolar.rda |binary gamlss.data-5.0-0/gamlss.data/data/computer.rda |binary gamlss.data-5.0-0/gamlss.data/data/datalist | 3 gamlss.data-5.0-0/gamlss.data/data/db.rda |binary gamlss.data-5.0-0/gamlss.data/data/dbbmi.rda |binary gamlss.data-5.0-0/gamlss.data/data/eu15.RData |only gamlss.data-5.0-0/gamlss.data/data/fabric.rda |binary gamlss.data-5.0-0/gamlss.data/data/film30.rda |binary gamlss.data-5.0-0/gamlss.data/data/film90.RData |only gamlss.data-5.0-0/gamlss.data/data/glass.rda |binary gamlss.data-5.0-0/gamlss.data/data/glasses.RData |binary gamlss.data-5.0-0/gamlss.data/data/grip.RData |binary gamlss.data-5.0-0/gamlss.data/data/hodges.rda |binary gamlss.data-5.0-0/gamlss.data/data/hodges1.rda |binary gamlss.data-5.0-0/gamlss.data/data/lice.rda |binary gamlss.data-5.0-0/gamlss.data/data/margolin.rda |binary gamlss.data-5.0-0/gamlss.data/data/meta.rda |binary gamlss.data-5.0-0/gamlss.data/data/mvi.rda |binary gamlss.data-5.0-0/gamlss.data/data/mviBig.rda |binary gamlss.data-5.0-0/gamlss.data/data/oil.RData |binary gamlss.data-5.0-0/gamlss.data/data/parzen.rda |binary gamlss.data-5.0-0/gamlss.data/data/polio.rda |binary gamlss.data-5.0-0/gamlss.data/data/rent.rda |binary gamlss.data-5.0-0/gamlss.data/data/rent99.polys.rda |binary gamlss.data-5.0-0/gamlss.data/data/rent99.rda |binary gamlss.data-5.0-0/gamlss.data/data/respInf.rda |binary gamlss.data-5.0-0/gamlss.data/data/species.rda |binary gamlss.data-5.0-0/gamlss.data/data/stylo.rda |binary gamlss.data-5.0-0/gamlss.data/data/tensile.rda |binary gamlss.data-5.0-0/gamlss.data/data/trd.RData |binary gamlss.data-5.0-0/gamlss.data/data/tse.rda |binary gamlss.data-5.0-0/gamlss.data/data/usair.rda |binary gamlss.data-5.0-0/gamlss.data/data/vas5.rda |binary gamlss.data-5.0-0/gamlss.data/man/eu15.Rd |only gamlss.data-5.0-0/gamlss.data/man/film90.Rd | 24 ++-- gamlss.data-5.0-0/gamlss.data/man/leukemia.Rd | 8 - 48 files changed, 70 insertions(+), 67 deletions(-)
Title: Generalised Additive Models for Location Scale and Shape
Description: Functions for fitting, displaying and checking GAMLSS Models.
Author: Mikis Stasinopoulos [aut, cre, cph],
Bob Rigby [aut],
Vlasios Voudouris [ctb],
Calliope Akantziliotou [ctb],
Marco Enea [ctb],
Daniil Kiose [ctb]
Maintainer: Mikis Stasinopoulos <mikis.stasinopoulos@gamlss.org>
Diff between gamlss versions 4.4-0 dated 2016-05-18 and 5.0-0 dated 2016-10-18
gamlss-4.4-0/gamlss/R/gen-Likelihood-12-06-13.R |only gamlss-5.0-0/gamlss/DESCRIPTION | 20 - gamlss-5.0-0/gamlss/MD5 | 143 ++++---- gamlss-5.0-0/gamlss/NAMESPACE | 3 gamlss-5.0-0/gamlss/R/HistDist-03-10-13.R | 34 +- gamlss-5.0-0/gamlss/R/PROFILE_new_19-08-12.R | 8 gamlss-5.0-0/gamlss/R/SUMMARY.R | 329 ++++++++++---------- gamlss-5.0-0/gamlss/R/dtop.R | 127 +++++-- gamlss-5.0-0/gamlss/R/fitted-plot.R | 390 ++++++++++++------------ gamlss-5.0-0/gamlss/R/gamlss.R | 9 gamlss-5.0-0/gamlss/R/gamlssVGD.R | 4 gamlss-5.0-0/gamlss/R/gen-Likelihood.R |only gamlss-5.0-0/gamlss/R/getPEF.R |only gamlss-5.0-0/gamlss/R/lms.R | 64 +-- gamlss-5.0-0/gamlss/R/pb_03-02-2014.R | 1 gamlss-5.0-0/gamlss/R/pb_goingtozero.R | 6 gamlss-5.0-0/gamlss/R/pb_new.R | 27 + gamlss-5.0-0/gamlss/R/plot.R | 246 +++++++-------- gamlss-5.0-0/gamlss/R/predict.gamlss.R | 95 ++--- gamlss-5.0-0/gamlss/R/predictAll.R |only gamlss-5.0-0/gamlss/R/print.R | 84 ++--- gamlss-5.0-0/gamlss/R/profterm_18_05_13.R | 8 gamlss-5.0-0/gamlss/R/term.plot-new.R | 20 - gamlss-5.0-0/gamlss/R/vcov-gamlss.R | 66 ++-- gamlss-5.0-0/gamlss/inst/doc/NEWS.txt | 38 ++ gamlss-5.0-0/gamlss/man/IC.Rd | 2 gamlss-5.0-0/gamlss/man/LR.test.Rd | 2 gamlss-5.0-0/gamlss/man/Q.stats.Rd | 2 gamlss-5.0-0/gamlss/man/Rsq.Rd | 2 gamlss-5.0-0/gamlss/man/bfp.Rd | 2 gamlss-5.0-0/gamlss/man/calibration.Rd | 2 gamlss-5.0-0/gamlss/man/centiles.Rd | 2 gamlss-5.0-0/gamlss/man/centiles.com.Rd | 2 gamlss-5.0-0/gamlss/man/centiles.pred.Rd | 2 gamlss-5.0-0/gamlss/man/centiles.split.Rd | 2 gamlss-5.0-0/gamlss/man/coef.gamlss.Rd | 2 gamlss-5.0-0/gamlss/man/deviance.gamlss.Rd | 2 gamlss-5.0-0/gamlss/man/dtop.Rd | 9 gamlss-5.0-0/gamlss/man/edf.Rd | 2 gamlss-5.0-0/gamlss/man/fitDist.Rd | 2 gamlss-5.0-0/gamlss/man/fitted.gamlss.Rd | 2 gamlss-5.0-0/gamlss/man/fittedPlot.Rd | 2 gamlss-5.0-0/gamlss/man/formula.gamlss.Rd | 2 gamlss-5.0-0/gamlss/man/gamlss.Rd | 2 gamlss-5.0-0/gamlss/man/gamlss.control.Rd | 140 ++++---- gamlss-5.0-0/gamlss/man/gamlss.cs.Rd | 2 gamlss-5.0-0/gamlss/man/gamlss.fp.Rd | 2 gamlss-5.0-0/gamlss/man/gamlss.package.Rd | 4 gamlss-5.0-0/gamlss/man/gamlss.ps.Rd | 2 gamlss-5.0-0/gamlss/man/gamlssML.Rd | 2 gamlss-5.0-0/gamlss/man/gen.likelihood.Rd | 3 gamlss-5.0-0/gamlss/man/getPEF.Rd |only gamlss-5.0-0/gamlss/man/glim.control.Rd | 2 gamlss-5.0-0/gamlss/man/histDist.Rd | 8 gamlss-5.0-0/gamlss/man/lms.Rd | 2 gamlss-5.0-0/gamlss/man/lo.Rd | 2 gamlss-5.0-0/gamlss/man/loglogSurv.Rd | 2 gamlss-5.0-0/gamlss/man/par.plot.Rd | 2 gamlss-5.0-0/gamlss/man/pcat.Rd | 4 gamlss-5.0-0/gamlss/man/pdf.plot.Rd | 2 gamlss-5.0-0/gamlss/man/plot.gamlss.Rd | 2 gamlss-5.0-0/gamlss/man/polyS.Rd | 2 gamlss-5.0-0/gamlss/man/predict.gamlss.Rd | 11 gamlss-5.0-0/gamlss/man/print.gamlss.Rd | 2 gamlss-5.0-0/gamlss/man/prof.dev.Rd | 2 gamlss-5.0-0/gamlss/man/prof.term.Rd | 2 gamlss-5.0-0/gamlss/man/ps.Rd | 2 gamlss-5.0-0/gamlss/man/refit.Rd | 2 gamlss-5.0-0/gamlss/man/residuals.gamlss.Rd | 2 gamlss-5.0-0/gamlss/man/ri.Rd | 2 gamlss-5.0-0/gamlss/man/rqres.plot.Rd | 2 gamlss-5.0-0/gamlss/man/rvcov.Rd | 2 gamlss-5.0-0/gamlss/man/summary.gamlss.Rd | 2 gamlss-5.0-0/gamlss/man/update.gamlss.Rd | 2 gamlss-5.0-0/gamlss/man/z.scores.Rd | 2 75 files changed, 1052 insertions(+), 933 deletions(-)
Title: Some Useful Functions from Spreadsheets and 'SPSS' Statistics
Description: Package implements several popular functions from Excel ('COUNTIF', 'VLOOKUP', etc.) and 'SPSS' Statistics ('RECODE', 'COUNT', etc.). Also there are functions for basic tables with value labels/variable labels support. Package aimed to help people to move data processing from Excel/'SPSS' to R.
Author: Gregory Demin
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between expss versions 0.5.1 dated 2016-07-07 and 0.5.5 dated 2016-10-18
expss-0.5.1/expss/R/methods.R |only expss-0.5.5/expss/DESCRIPTION | 9 expss-0.5.5/expss/MD5 | 164 +++++-- expss-0.5.5/expss/NAMESPACE | 92 ++++ expss-0.5.5/expss/NEWS | 12 expss-0.5.5/expss/R/S3_methods.R |only expss-0.5.5/expss/R/add_rows.R |only expss-0.5.5/expss/R/count_if.R | 24 - expss-0.5.5/expss/R/criteria_functions.R | 106 ++++- expss-0.5.5/expss/R/dichotomy.R | 2 expss-0.5.5/expss/R/dtfrm.R | 33 + expss-0.5.5/expss/R/f.R | 2 expss-0.5.5/expss/R/fre.R | 104 +---- expss-0.5.5/expss/R/if_na.R | 14 expss-0.5.5/expss/R/if_val.R | 254 ++++++++---- expss-0.5.5/expss/R/info.R | 10 expss-0.5.5/expss/R/keep.R |only expss-0.5.5/expss/R/labels.R | 134 ++++-- expss-0.5.5/expss/R/merge.R |only expss-0.5.5/expss/R/modify.R | 37 + expss-0.5.5/expss/R/na_if.R | 15 expss-0.5.5/expss/R/prop.R |only expss-0.5.5/expss/R/read_spss.R | 52 +- expss-0.5.5/expss/R/sort.R |only expss-0.5.5/expss/R/sum.R | 9 expss-0.5.5/expss/R/utils.R | 28 + expss-0.5.5/expss/R/values2labels.R | 20 expss-0.5.5/expss/R/vec_ops.R | 85 +++- expss-0.5.5/expss/R/vlookup.R | 89 +--- expss-0.5.5/expss/R/where.R |only expss-0.5.5/expss/R/write_labels.R | 27 - expss-0.5.5/expss/R/zzz_experimental.R | 97 ++-- expss-0.5.5/expss/inst/doc/UsageExamples.R | 14 expss-0.5.5/expss/inst/doc/UsageExamples.Rmd | 14 expss-0.5.5/expss/inst/doc/UsageExamples.html | 20 expss-0.5.5/expss/man/add_rows.Rd |only expss-0.5.5/expss/man/as.labelled.Rd |only expss-0.5.5/expss/man/compute.Rd | 11 expss-0.5.5/expss/man/criteria.Rd | 65 ++- expss-0.5.5/expss/man/dtfrm.Rd | 17 expss-0.5.5/expss/man/if_na.Rd | 9 expss-0.5.5/expss/man/if_val.Rd | 88 ++-- expss-0.5.5/expss/man/keep.Rd |only expss-0.5.5/expss/man/merge.simple_table.Rd |only expss-0.5.5/expss/man/modify.Rd | 3 expss-0.5.5/expss/man/na_if.Rd | 7 expss-0.5.5/expss/man/prop.Rd |only expss-0.5.5/expss/man/sort_asc.Rd |only expss-0.5.5/expss/man/val_lab.Rd | 13 expss-0.5.5/expss/man/vectors.Rd | 42 +- expss-0.5.5/expss/man/where.Rd |only expss-0.5.5/expss/tests/testthat/rds/add_rows1.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows10.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows2.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows3.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows4.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows5.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows6.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows6a.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows6b.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows7.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows8.rds |only expss-0.5.5/expss/tests/testthat/rds/add_rows9.rds |only expss-0.5.5/expss/tests/testthat/rds/cro_mean_out.txt |only expss-0.5.5/expss/tests/testthat/rds/fre2.6.rds |only expss-0.5.5/expss/tests/testthat/rds/fre2.7.rds |only expss-0.5.5/expss/tests/testthat/rds/fre_ex3.1.rds |only expss-0.5.5/expss/tests/testthat/rds/fre_ex3.2.rds |only expss-0.5.5/expss/tests/testthat/rds/fre_ex3.3.rds |only expss-0.5.5/expss/tests/testthat/rds/fre_out.txt |only expss-0.5.5/expss/tests/testthat/rds/fre_out_unrounded.txt |only expss-0.5.5/expss/tests/testthat/rds/info13.rds |only expss-0.5.5/expss/tests/testthat/rds/merge10.rds |only expss-0.5.5/expss/tests/testthat/rds/merge11.rds |only expss-0.5.5/expss/tests/testthat/rds/merge12.rds |only expss-0.5.5/expss/tests/testthat/rds/merge7.rds |only expss-0.5.5/expss/tests/testthat/rds/merge8.rds |only expss-0.5.5/expss/tests/testthat/rds/merge9.rds |only expss-0.5.5/expss/tests/testthat/rds/nsk.rds |only expss-0.5.5/expss/tests/testthat/test_add_rows.R |only expss-0.5.5/expss/tests/testthat/test_count_if.R | 10 expss-0.5.5/expss/tests/testthat/test_criteria_functions.R |only expss-0.5.5/expss/tests/testthat/test_default_dataset.R | 9 expss-0.5.5/expss/tests/testthat/test_dichotomy.R | 10 expss-0.5.5/expss/tests/testthat/test_dtfrm.R | 11 expss-0.5.5/expss/tests/testthat/test_experimental.R | 50 ++ expss-0.5.5/expss/tests/testthat/test_fre.R | 110 +++++ expss-0.5.5/expss/tests/testthat/test_if_na.R | 23 - expss-0.5.5/expss/tests/testthat/test_if_val.R | 270 +++++++++++-- expss-0.5.5/expss/tests/testthat/test_if_val_with_na.R | 102 ++-- expss-0.5.5/expss/tests/testthat/test_info.R | 9 expss-0.5.5/expss/tests/testthat/test_keep.R |only expss-0.5.5/expss/tests/testthat/test_labels.R | 106 +++++ expss-0.5.5/expss/tests/testthat/test_mean_if.R | 24 + expss-0.5.5/expss/tests/testthat/test_merge.R |only expss-0.5.5/expss/tests/testthat/test_methods.R | 70 +++ expss-0.5.5/expss/tests/testthat/test_modify.R | 73 +++ expss-0.5.5/expss/tests/testthat/test_na_if.R | 4 expss-0.5.5/expss/tests/testthat/test_prop.R |only expss-0.5.5/expss/tests/testthat/test_selectors.R | 22 - expss-0.5.5/expss/tests/testthat/test_sort.R |only expss-0.5.5/expss/tests/testthat/test_sum.R | 6 expss-0.5.5/expss/tests/testthat/test_values2labels.R | 14 expss-0.5.5/expss/tests/testthat/test_vec_ops.R | 77 +++ expss-0.5.5/expss/tests/testthat/test_vlookup.R | 35 + expss-0.5.5/expss/tests/testthat/test_where.R |only expss-0.5.5/expss/tests/testthat/test_write_labels.R | 46 ++ expss-0.5.5/expss/vignettes/UsageExamples.Rmd | 14 108 files changed, 2167 insertions(+), 650 deletions(-)
Title: Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
Description: Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu <fang.liu.131@nd.edu> with contributions from Yunchuan Kong
Maintainer: Fang Liu <fang.liu.131@nd.edu>
Diff between zoib versions 1.4.1 dated 2016-07-26 and 1.4.2 dated 2016-10-18
DESCRIPTION | 8 +-- MD5 | 16 +++---- R/check.psrf.R | 68 ++++-------------------------- R/paraplot.R | 9 +--- R/zoib.R | 117 ++++++++++++++-------------------------------------- man/paraplot.Rd | 11 ---- man/zoib-package.Rd | 9 ++-- man/zoib.Rd | 3 + tests/test1.R | 2 9 files changed, 70 insertions(+), 173 deletions(-)
Title: Nonparametric Methods for Cognitive Diagnosis
Description: An array of nonparametric and parametric estimation methods for cognitive diagnostic models, including nonparametric classification of examinee attribute profiles, joint maximum likelihood estimation (JMLE) of examinee attribute profiles and item parameters, and nonparametric refinement of the Q-matrix, as well as conditional maximum likelihood estimation (CMLE) of examinee attribute profiles given item parameters and CMLE of item parameters given examinee attribute profiles. Currently the nonparametric methods in the package support both conjunctive and disjunctive models, and the parametric methods in the package support the DINA model, the DINO model, the NIDA model, the G-NIDA model, and the R-RUM model.
Author: Yi Zheng [aut, cre],
Chia-Yi Chiu [aut],
Jeffrey A. Douglas [ctb]
Maintainer: Yi Zheng <yi.isabel.zheng@asu.edu>
Diff between NPCD versions 1.0-9 dated 2015-10-03 and 1.0-10 dated 2016-10-18
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NAMESPACE | 2 +- R/JMLE.R | 16 ++++++++++++++-- R/ModelFit.R |only R/print.NPCD.R | 1 + man/JMLE.Rd | 1 + man/ModelFit.Rd |only man/NPCD.Rd | 6 ++++-- man/ParMLE.Rd | 1 + 10 files changed, 35 insertions(+), 16 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for the analysis of multiple social networks are delivered with
this package. Among other things, it makes possible to create and manipulate multivariate
network data with different formats, and there are effective ways available to treat multiple
networks with routines that combine algebraic systems like the partially ordered semigroup or
the semiring structure together with the relational bundles occurring in different types of
multivariate network data sets. It also provides an algebraic approach for two-mode networks
through Galois derivations between families of the pairs of subsets in the two domains.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 2.3 dated 2016-10-17 and 2.4.1 dated 2016-10-18
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/bnd.R | 7 ++----- inst/CHANGELOG | 5 ++++- man/multiplex-package.Rd | 4 ++-- 5 files changed, 16 insertions(+), 16 deletions(-)
Title: Iterated Racing for Automatic Algorithm Configuration
Description: Iterated race is an extension of the Iterated F-race method for
the automatic configuration of optimization algorithms, that is,
(offline) tuning their parameters by finding the most appropriate
settings given a set of instances of an optimization problem.
Author: Manuel López-Ibáñez, Jérémie Dubois-Lacoste, Leslie Pérez Cáceres,
Thomas Stützle, Mauro Birattari, Eric Yuan and Prasanna Balaprakash
Maintainer: Manuel López-Ibáñez <manuel.lopez-ibanez@manchester.ac.uk>
Diff between irace versions 2.0 dated 2016-10-07 and 2.1 dated 2016-10-18
DESCRIPTION | 8 +- MD5 | 32 +++++------ NEWS | 7 ++ R/irace.R | 40 +++++++++---- R/main.R | 6 +- R/race-wrapper.R | 4 + R/version.R | 2 README.md | 126 +++++++++----------------------------------- build/vignette.rds |binary inst/CITATION | 4 + inst/doc/irace-package.Rnw | 61 +++++++++------------ inst/doc/irace-package.pdf |binary man/irace-package.Rd | 4 - tests/testthat.R | 3 - vignettes/NEWS.txt | 7 ++ vignettes/irace-package.Rnw | 61 +++++++++------------ vignettes/irace-package.bib | 20 ++++++ 17 files changed, 173 insertions(+), 212 deletions(-)
Title: The Guardian API Wrapper
Description: Provides an interface to the Open Platform's Content API of the Guardian Media Group. It retrieves content from news outlets The Observer, The Guardian, and guardian.co.uk from 1999 to current day.
Author: Marco Bastos [aut, cre],
Cornelius Puschmann [aut],
Mark Johnman [ctb]
Maintainer: Marco Bastos <marco@toledobastos.com>
Diff between GuardianR versions 0.7 dated 2016-09-16 and 0.8 dated 2016-10-18
ChangeLog | 9 ++++--- DESCRIPTION | 8 +++--- MD5 | 12 ++++----- R/guardianr.R | 21 ++++++++-------- man/GuardianR-package.Rd | 4 +-- man/get_guardian.Rd | 59 ++++++++++++++++++++++++++++++++++++++++++++--- man/get_json.Rd | 2 - 7 files changed, 86 insertions(+), 29 deletions(-)
Title: Automated Feature Selection from 'caret'
Description: Automated feature selection using variety of models
provided by 'caret' package.
This work was funded by Poland-Singapore bilateral cooperation
project no 2/3/POL-SIN/2012.
Author: Jakub Szlek [aut, cre],
Aleksander Mendyk [ctb]
Maintainer: Jakub Szlek <j.szlek@uj.edu.pl>
Diff between fscaret versions 0.9.4 dated 2015-04-20 and 0.9.4.1 dated 2016-10-18
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 3 +++ R/fscaret.R | 6 +++--- R/impCalc.R | 34 ++++++++++++++++++++++++++++------ build/vignette.rds |binary inst/NEWS.Rd | 13 +++++++++++++ inst/doc/fscaret.pdf |binary man/fscaret-package.Rd | 4 ++-- man/fscaret.Rd | 5 ++++- man/impCalc.Rd | 10 +++++++--- 11 files changed, 74 insertions(+), 29 deletions(-)
Title: Species Identification using DNA Barcodes
Description: To perform species identification using DNA barcodes.
Author: Ai-bing ZHANG [aut, cre],
Meng-di HAO [aut],
Cai-qing YANG [aut],
Zhi-yong SHI [aut]
Maintainer: Ai-bing ZHANG <Zhangab2008@mail.cnu.edu.cn>
Diff between BarcodingR versions 1.0-1 dated 2016-07-19 and 1.0-2 dated 2016-10-18
BarcodingR-1.0-1/BarcodingR/R/concensus.identify.R |only BarcodingR-1.0-2/BarcodingR/DESCRIPTION | 6 - BarcodingR-1.0-2/BarcodingR/MD5 | 50 ++++++------- BarcodingR-1.0-2/BarcodingR/R/DNAbin2kmerFreqMatrix.R | 8 +- BarcodingR-1.0-2/BarcodingR/R/FMF.R | 4 - BarcodingR-1.0-2/BarcodingR/R/FMFtheta12.R | 2 BarcodingR-1.0-2/BarcodingR/R/TDR2.R | 6 - BarcodingR-1.0-2/BarcodingR/R/barcodes.eval.R | 6 - BarcodingR-1.0-2/BarcodingR/R/barcoding.spe.identify.R | 7 + BarcodingR-1.0-2/BarcodingR/R/barcoding.spe.identify2.R | 9 +- BarcodingR-1.0-2/BarcodingR/R/bbsik.R | 4 - BarcodingR-1.0-2/BarcodingR/R/char2NumVector.R | 4 - BarcodingR-1.0-2/BarcodingR/R/consensus.identify.R |only BarcodingR-1.0-2/BarcodingR/R/optimize.kmer.R | 4 - BarcodingR-1.0-2/BarcodingR/man/DNAbin2kmerFreqMatrix.Rd | 6 - BarcodingR-1.0-2/BarcodingR/man/FMF.Rd | 4 - BarcodingR-1.0-2/BarcodingR/man/FMFtheta12.Rd | 2 BarcodingR-1.0-2/BarcodingR/man/TDR2.Rd | 6 - BarcodingR-1.0-2/BarcodingR/man/barcodes.eval.Rd | 6 - BarcodingR-1.0-2/BarcodingR/man/barcoding.spe.identify.Rd | 6 + BarcodingR-1.0-2/BarcodingR/man/barcoding.spe.identify2.Rd | 6 + BarcodingR-1.0-2/BarcodingR/man/bbsik.Rd | 2 BarcodingR-1.0-2/BarcodingR/man/char2NumVector.Rd | 4 - BarcodingR-1.0-2/BarcodingR/man/consensus.identify.Rd | 4 - BarcodingR-1.0-2/BarcodingR/man/optimize.kmer.Rd | 4 - BarcodingR-1.0-2/BarcodingR/man/pineMothITS1.Rd | 6 - BarcodingR-1.0-2/BarcodingR/man/pineMothITS2.Rd | 10 +- 27 files changed, 93 insertions(+), 83 deletions(-)
Title: Fast and Easy Quality Control of EWAS Results Files
Description: Tools for (automated and manual) quality control of
the results of Epigenome-Wide Association Studies.
Author: Peter J. van der Most,
Leanne K. Kupers,
Ilja Nolte
Maintainer: Peter J. van der Most <p.j.van.der.most@umcg.nl>
Diff between QCEWAS versions 1.0-7 dated 2016-06-13 and 1.0-8 dated 2016-10-18
QCEWAS-1.0-7/QCEWAS/R/script_v10-7_package.R |only QCEWAS-1.0-8/QCEWAS/DESCRIPTION | 14 +- QCEWAS-1.0-8/QCEWAS/MD5 | 25 ++--- QCEWAS-1.0-8/QCEWAS/NAMESPACE | 2 QCEWAS-1.0-8/QCEWAS/R/script_v10-8_package.R |only QCEWAS-1.0-8/QCEWAS/inst/CITATION |only QCEWAS-1.0-8/QCEWAS/inst/doc |only QCEWAS-1.0-8/QCEWAS/inst/extdata/sample_markers_to_exclude.txt |only QCEWAS-1.0-8/QCEWAS/inst/extdata/translation_table.txt | 2 QCEWAS-1.0-8/QCEWAS/man/EWAS_QC.Rd | 47 +++++++--- QCEWAS-1.0-8/QCEWAS/man/EWAS_plots.Rd | 14 ++ QCEWAS-1.0-8/QCEWAS/man/EWAS_series.Rd | 24 ++--- QCEWAS-1.0-8/QCEWAS/man/P_correlation.Rd | 9 + QCEWAS-1.0-8/QCEWAS/man/P_lambda.Rd | 41 +++++--- QCEWAS-1.0-8/QCEWAS/man/QCEWAS-package.Rd | 7 + QCEWAS-1.0-8/QCEWAS/man/translate_header.Rd | 12 -- 16 files changed, 126 insertions(+), 71 deletions(-)
Title: Person Fit
Description: Several person-fit statistics (PFSs) are offered. These statistics allow assessing whether
individual response patterns to tests or questionnaires are (im)plausible given
the other respondents in the sample or given a specified item response theory model. Some PFSs apply to
dichotomous data, such as the likelihood-based PFSs (lz, lz*) and the group-based PFSs
(personal biserial correlation, caution index, (normed) number of Guttman errors,
agreement/disagreement/dependability statistics, U3, ZU3, NCI, Ht). PFSs suitable to polytomous data include
extensions of lz, U3, and (normed) number of Guttman errors.
Author: Jorge N. Tendeiro
Maintainer: Jorge N. Tendeiro <j.n.tendeiro@rug.nl>
Diff between PerFit versions 1.4 dated 2015-07-20 and 1.4.1 dated 2016-10-18
DESCRIPTION | 15 +++++++++------ MD5 | 11 ++++++----- data/InadequacyData.RData |binary data/IntelligenceData.RData |binary data/PhysFuncData.RData |binary inst |only man/PerFit-package.Rd | 2 ++ 7 files changed, 17 insertions(+), 11 deletions(-)
Title: Tools for Survey Statistics in Educational Assessment
Description:
Contains tools for survey statistics (especially in educational
assessment) for datasets with replication designs (jackknife,
bootstrap, replicate weights). Descriptive statistics, linear
and logistic regression, path models for manifest variables
with measurement error correction and two-level hierarchical
regressions for weighted samples are included. Statistical
inference can be conducted for multiply imputed datasets and
nested multiply imputed datasets.
This package is developed by BIFIE (Federal Institute for
Educational Research, Innovation and Development of the Austrian
School System; Salzburg, Austria).
Author:
BIFIE
Maintainer:
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between BIFIEsurvey versions 1.9.4-0 dated 2016-06-01 and 1.11-0 dated 2016-10-18
DESCRIPTION | 8 +-- MD5 | 38 +++++++++--------- R/BIFIE.by.R | 50 ++++++++++++------------ R/BIFIE.waldtest.R | 42 ++++++++++---------- R/bifietable.R | 12 ++--- R/zzz.R | 4 - data/data.bifie01.rda |binary data/data.pisaNLD.rda |binary data/data.test1.rda |binary data/data.timss1.ind.rda |binary data/data.timss1.rda |binary data/data.timss2.rda |binary data/data.timss3.rda |binary data/data.timss4.rda |binary data/data.timssrep.rda |binary inst/NEWS | 15 ++++++- man/BIFIE.ecdf.Rd | 4 + man/BIFIE.linreg.Rd | 82 ++++++++++++++++++++++++++++++++++++++++ man/BIFIEsurvey-package.Rd | 2 src/univar_helpers.h | 92 ++++++++++++++++++++++----------------------- 20 files changed, 222 insertions(+), 127 deletions(-)
Title: Variance Dispersion Graphs and Fraction of Design Space Plots
Description: Facilities for constructing variance dispersion graphs, fraction-
of-design-space plots and similar graphics for exploring the properties of
experimental designs. The design region is explored via random sampling, which
allows for more flexibility than traditional variance dispersion graphs. A
formula interface is leveraged to provide access to complex model formulae.
Graphics can be constructed simultaneously for multiple experimental designs
and/or multiple model formulae. Instead of using pointwise optimization to
find the minimum and maximum scaled prediction variance curves, which can be
inaccurate and time consuming, this package uses quantile regression as an
alternative.
Author: Pieter Schoonees [aut, cre, cph], Niel le Roux [ctb]
Maintainer: Pieter Schoonees <schoonees@gmail.com>
Diff between vdg versions 1.1.3 dated 2016-01-05 and 1.2.0 dated 2016-10-18
DESCRIPTION | 10 +++++----- MD5 | 47 ++++++++++++++++++++++++----------------------- R/LHS.R | 4 ++++ R/meanspv.R | 5 +++++ R/plot.spv.R | 4 ++++ R/print.spv.R | 4 ++++ R/runif_sphere.R | 4 ++++ R/sampler.R | 4 ++++ R/spv.R | 4 ++++ R/vdg-package.R | 6 +++++- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 32 +++++++++++++++++++++++--------- inst/doc/vdg.Rnw | 16 ++++++++-------- inst/doc/vdg.pdf |binary man/LHS.Rd | 5 +++++ man/meanspv.Rd | 8 ++++++++ man/plot.spv.Rd | 5 +++++ man/print.spv.Rd | 5 +++++ man/runif_sphere.Rd | 5 +++++ man/sampler.Rd | 5 +++++ man/spv.Rd | 5 +++++ man/vdg-package.Rd | 5 +++++ vignettes/vdg.Rnw | 16 ++++++++-------- vignettes/vdg.bib | 19 +++++++++++++++---- 25 files changed, 160 insertions(+), 58 deletions(-)
Title: Tools for the Analysis of Animal Track Data
Description: Functions for accessing and manipulating spatial data for animal
tracking, with straightforward coercion from and to other formats. Filter
for speed and create time spent maps from animal track data. There are
coercion methods to convert between 'trip' and 'ltraj' from 'adehabitatLT',
and between 'trip' and 'psp' and 'ppp' from 'spatstat'.
Author: Michael D. Sumner [aut, cre],
Sebastian Luque [ctb],
Anthony Fischbach [ctb]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between trip versions 1.1-21 dated 2015-05-21 and 1.5.0 dated 2016-10-18
ChangeLog | 1966 ++++++++++++++++++++-------------------- DESCRIPTION | 26 MD5 | 103 +- NAMESPACE | 138 +- NEWS | 530 +++++----- R/AllClass.R | 314 +++--- R/AllMethod.R | 1104 +++++++++++----------- R/as.trip.R | 122 +- R/coerce.R | 308 +++--- R/colours.R | 198 ++-- R/distance.R | 70 - R/filter.R | 574 +++++------ R/grid.R | 819 ++++++++-------- R/interpequal.R | 72 - R/speedDistanceAngle.R | 150 +-- R/trip-deprecated.R | 120 +- R/trip-package.r |only R/trip.R | 1934 +++++++++++++++++++-------------------- README.md | 96 - build/vignette.rds |binary data |only inst/doc/trip.R | 142 +- inst/doc/trip.Rmd | 217 ++-- inst/doc/trip.html | 553 ++++------- inst/triptopology.r |only man/TimeOrderedRecords-class.Rd | 60 - man/TimeOrderedRecords.Rd | 44 man/adjust.duplicateTimes.Rd | 98 + man/argos.sigma.Rd | 84 - man/as.Other.Rd | 128 +- man/as.trip-methods.Rd | 90 - man/cut.trip.Rd | 208 ++-- man/filter.penSS.Rd | 204 ++-- man/forceCompliance.Rd | 62 - man/homedist.Rd | 50 - man/makeGridTopology.Rd | 72 - man/oc.theme.Rd | 86 - man/rasterize.Rd | 93 - man/readArgos.Rd | 194 +-- man/sda.Rd | 74 - man/sepIdGaps.Rd | 96 + man/speedfilter.Rd | 132 +- man/trackAngle.Rd | 64 - man/trackDistance.Rd | 146 +- man/trip-accessors.Rd | 91 - man/trip-class.Rd | 124 +- man/trip-internal.Rd | 91 - man/trip-methods.Rd | 285 ++--- man/trip-package.Rd |only man/trip.split.exact.Rd | 82 - man/tripGrid.Rd | 83 - man/tripGrid.interp.Rd | 132 +- man/walrus818.Rd |only tests |only vignettes/trip.Rmd | 217 ++-- 55 files changed, 6355 insertions(+), 6291 deletions(-)
Title: Nonparametric Estimation of Preferential Attachment and Node
Fitness in Temporal Complex Networks
Description: A statistically sound method for estimating jointly the attachment function and node fitness in a temporal complex network by maximizing a suitable penalized log-likelihood function is implemented in this package. Tutorial can be found in the accompanying vignette. For a list of references, please run the command: citation("PAFit").
Author: Thong Pham, Paul Sheridan, Hidetoshi Shimodaira
Maintainer: Thong Pham <thongpham@thongpham.net>
Diff between PAFit versions 0.8.6 dated 2016-09-07 and 0.8.7 dated 2016-10-18
DESCRIPTION | 10 - MD5 | 34 +++--- R/CreateDataCV.R | 4 R/GetStatistics.R | 64 ++++++++---- R/PAFit.R | 39 ++++--- R/RcppExports.R | 4 R/calculate_error_PA.R |only R/calculate_error_fitness.R |only R/performCV.R | 14 ++ R/plot.pafit.r | 6 - build/vignette.rds |binary inst/doc/Tutorial.pdf.asis | 2 man/CreateDataCV.Rd | 4 man/GetStatistics.Rd | 20 ++- man/PAFit-package.Rd | 6 - man/performCV.Rd | 24 +++- man/plot.PAFit.Rd | 22 ++-- src/Cpp_code.cpp | 229 +++++++++++++++++++++++++------------------- src/RcppExports.cpp | 7 - 19 files changed, 289 insertions(+), 200 deletions(-)
Title: Get the Timezone Information
Description: A function to retrieve the system timezone on Unix systems
which has been found to find an answer when 'Sys.timezone()' has failed.
It is based on an answer by Duane McCully posted on 'StackOverflow', and
adapted to be callable from R. The package also builds on Windows, but
just returns NULL.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between gettz versions 0.0.1 dated 2016-09-10 and 0.0.2 dated 2016-10-18
ChangeLog | 11 +++++++++++ DESCRIPTION | 13 +++++++------ MD5 | 12 ++++++------ README.md | 14 +++++++++++++- build/partial.rdb |binary man/gettz-package.Rd | 5 +++-- src/gettz.cpp | 2 ++ 7 files changed, 42 insertions(+), 15 deletions(-)
Title: Censored Regression with Conditional Heteroscedasticity
Description: Different approaches to censored or truncated regression with
conditional heteroscedasticity are provided. First, continuous
distributions can be used for the (right and/or left censored or truncated)
response with separate linear predictors for the mean and variance.
Second, cumulative link models for ordinal data
(obtained by interval-censoring continuous data) can be employed for
heteroscedastic extended logistic regression (HXLR). In the latter type of
models, the intercepts depend on the thresholds that define the intervals.
Author: Jakob Messner [aut, cre],
Achim Zeileis [aut]
Maintainer: Jakob Messner <jwmm@elektro.dtu.dk>
Diff between crch versions 0.9-2 dated 2016-02-29 and 1.0-0 dated 2016-10-18
DESCRIPTION | 14 ++++---- MD5 | 40 ++++++++++++------------ NAMESPACE | 3 + NEWS | 8 ++++ R/crch.R | 86 ++++++++++++++++++++++++++++++++++++++++++++-------- R/crch.boost.R | 9 ++--- R/mtable.R |only build/partial.rdb |only build/vignette.rds |binary data/RainIbk.rda |binary inst/CITATION | 44 +++++++++++++------------- inst/doc/crch.pdf |binary man/coef.crch.Rd | 1 man/crch.Rd | 7 +++- man/crch.control.Rd | 7 +++- man/hxlr.Rd | 6 +-- src/clogis.c | 4 -- src/cnorm.c | 4 -- src/tlogis.c | 10 +++--- src/tnorm.c | 10 +++--- src/tt.c | 10 +++--- vignettes/crch.bib | 27 +++++++++++++++- 22 files changed, 195 insertions(+), 95 deletions(-)
Title: Bibliometric and Co-Citation Analysis Tool
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from SCOPUS and
Thomson Reuters' ISI Web of Knowledge databases, performing bibliometric analysis
and building data matrices for co-citation, coupling and scientific collaboration analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 1.1 dated 2016-09-07 and 1.2 dated 2016-10-18
bibliometrix-1.1/bibliometrix/R/keywordsAssoc.R |only bibliometrix-1.1/bibliometrix/man/keywordsAssoc.Rd |only bibliometrix-1.2/bibliometrix/DESCRIPTION | 8 bibliometrix-1.2/bibliometrix/MD5 | 33 +- bibliometrix-1.2/bibliometrix/NAMESPACE | 4 bibliometrix-1.2/bibliometrix/NEWS | 14 + bibliometrix-1.2/bibliometrix/R/citations.R | 31 ++ bibliometrix-1.2/bibliometrix/R/keywordAssoc.R |only bibliometrix-1.2/bibliometrix/R/keywordGrowth.R |only bibliometrix-1.2/bibliometrix/R/stopwords.R |only bibliometrix-1.2/bibliometrix/R/summary.bibliometrix.R | 25 + bibliometrix-1.2/bibliometrix/R/termExtraction.R |only bibliometrix-1.2/bibliometrix/R/zzz.R |only bibliometrix-1.2/bibliometrix/data/stopwords.rda |only bibliometrix-1.2/bibliometrix/inst/CITATION |only bibliometrix-1.2/bibliometrix/inst/doc/bibliometrix-vignette.R | 66 ++++ bibliometrix-1.2/bibliometrix/inst/doc/bibliometrix-vignette.Rmd | 78 +++++ bibliometrix-1.2/bibliometrix/inst/doc/bibliometrix-vignette.html | 133 ++++++++-- bibliometrix-1.2/bibliometrix/man/KeywordGrowth.Rd |only bibliometrix-1.2/bibliometrix/man/citations.Rd | 13 bibliometrix-1.2/bibliometrix/man/keywordAssoc.Rd |only bibliometrix-1.2/bibliometrix/man/stopwords.Rd |only bibliometrix-1.2/bibliometrix/man/termExtraction.Rd |only bibliometrix-1.2/bibliometrix/vignettes/bibliometrix-vignette.Rmd | 78 +++++ 24 files changed, 413 insertions(+), 70 deletions(-)
Title: Automated Spectral Deconvolution, Alignment, and Metabolite
Identification in GC/MS-Based Untargeted Metabolomics
Description: Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics. Outputs a table with compound names, matching scores and the integrated area of the compound for each sample.
Author: Xavier Domingo-Almenara, Sara Samino, Maria Vinaixa, Alexandre Perera, Oscar Yanes
Maintainer: Xavier Domingo-Almenara <xavier.domingo@urv.cat>
Diff between erah versions 1.0.3 dated 2016-10-13 and 1.0.4 dated 2016-10-18
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NAMESPACE | 2 +- NEWS | 5 +++++ R/MSimport.R |only man/importMSP.Rd |only 6 files changed, 15 insertions(+), 8 deletions(-)