Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at <http://www.ncdc.noaa.gov/cdo-web/webservices/v2>, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut, cre],
Brooke Anderson [ctb],
Maëlle Salmon [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Alex Simmons [ctb],
Karthik Ram [ctb],
Hart Edmund [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 0.6.4 dated 2016-10-07 and 0.6.5 dated 2016-10-22
rnoaa-0.6.4/rnoaa/R/aaa.r |only rnoaa-0.6.5/rnoaa/DESCRIPTION | 8 +- rnoaa-0.6.5/rnoaa/MD5 | 59 ++++++++-------- rnoaa-0.6.5/rnoaa/NEWS.md | 88 +++++++++++++++---------- rnoaa-0.6.5/rnoaa/R/argo.R | 2 rnoaa-0.6.5/rnoaa/R/caching.R | 2 rnoaa-0.6.5/rnoaa/R/coops.R | 74 +++++++++------------ rnoaa-0.6.5/rnoaa/R/ersst.R | 5 - rnoaa-0.6.5/rnoaa/R/ghcnd.R | 18 +++-- rnoaa-0.6.5/rnoaa/R/isd.R | 4 - rnoaa-0.6.5/rnoaa/R/isd_stations.R | 8 +- rnoaa-0.6.5/rnoaa/R/meteo_cache.r | 8 +- rnoaa-0.6.5/rnoaa/R/meteo_distance.R | 28 +++---- rnoaa-0.6.5/rnoaa/R/seaice.r | 12 +-- rnoaa-0.6.5/rnoaa/R/storm_shp.R | 2 rnoaa-0.6.5/rnoaa/R/storms.R | 4 - rnoaa-0.6.5/rnoaa/R/tornadoes.R | 7 + rnoaa-0.6.5/rnoaa/R/zzz.r | 2 rnoaa-0.6.5/rnoaa/man/argo.Rd | 4 - rnoaa-0.6.5/rnoaa/man/coops.Rd | 28 ++----- rnoaa-0.6.5/rnoaa/man/ersst.Rd | 3 rnoaa-0.6.5/rnoaa/man/ghcnd.Rd | 13 ++- rnoaa-0.6.5/rnoaa/man/ghcnd_search.Rd | 3 rnoaa-0.6.5/rnoaa/man/isd.Rd | 2 rnoaa-0.6.5/rnoaa/man/isd_stations.Rd | 7 + rnoaa-0.6.5/rnoaa/man/meteo_clear_cache.Rd | 5 + rnoaa-0.6.5/rnoaa/man/meteo_nearby_stations.Rd | 23 +++--- rnoaa-0.6.5/rnoaa/man/meteo_pull_monitors.Rd | 3 rnoaa-0.6.5/rnoaa/man/meteo_tidy_ghcnd.Rd | 3 rnoaa-0.6.5/rnoaa/man/storms.Rd | 2 rnoaa-0.6.5/rnoaa/man/tornadoes.Rd | 5 - 31 files changed, 234 insertions(+), 198 deletions(-)
Title: Model-Based Clustering of Categorical Sequences
Description: Clustering categorical sequences by means of finite mixtures with Markov model components is the main utility of ClickClust. The package also allows detecting blocks of equivalent states by forward and backward state selection procedures.
Author: Volodymyr Melnykov [aut, cre],
Rouben Rostamian [ctb, cph] (memory allocation in c)
Maintainer: Volodymyr Melnykov <vmelnykov@cba.ua.edu>
Diff between ClickClust versions 1.1.4 dated 2015-04-08 and 1.1.5 dated 2016-10-22
DESCRIPTION | 17 ++++++++++------- MD5 | 36 ++++++++++++++++++------------------ NAMESPACE | 4 ++++ NEWS | 5 +++++ inst/CITATION | 28 +++++++++++++++++----------- man/B3.Rd | 5 ++--- man/BackwardSearch.Rd | 5 +++-- man/C.Rd | 4 ++-- man/ClickClust-package.Rd | 4 +++- man/ClickClust.Rd | 6 ++++-- man/ClickPlot.Rd | 4 +++- man/ForwardSearch.Rd | 4 +++- man/Predict.Rd | 4 +++- man/ReadData.Rd | 4 +++- man/SimData.Rd | 4 +++- man/VarEst.Rd | 4 +++- man/msnbc323.Rd | 4 +++- man/print.summary.Rd | 5 ++++- man/synth.Rd | 4 ++-- 19 files changed, 95 insertions(+), 56 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading and writing foreign files containing
spectral data from spectrometers and their associated software, and output
from simulation models in common use. As well as functions for exchange
of spectral data with other R packages.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.11 dated 2016-09-25 and 0.4.12 dated 2016-10-22
photobiologyInOut-0.4.11/photobiologyInOut/R/read-libradtran-vesa.r |only photobiologyInOut-0.4.11/photobiologyInOut/man/read_libradtran_vesa.Rd |only photobiologyInOut-0.4.11/photobiologyInOut/vignettes/data-vignettes/libradtran-multi.dat |only photobiologyInOut-0.4.11/photobiologyInOut/vignettes/data-vignettes/libradtran-plain-2col.dat |only photobiologyInOut-0.4.11/photobiologyInOut/vignettes/data-vignettes/libradtran-plain.dat |only photobiologyInOut-0.4.12/photobiologyInOut/DESCRIPTION | 14 photobiologyInOut-0.4.12/photobiologyInOut/MD5 | 36 photobiologyInOut-0.4.12/photobiologyInOut/NAMESPACE | 3 photobiologyInOut-0.4.12/photobiologyInOut/NEWS | 7 photobiologyInOut-0.4.12/photobiologyInOut/R/read-csi-dat.r | 6 photobiologyInOut-0.4.12/photobiologyInOut/R/read-libradtran.r |only photobiologyInOut-0.4.12/photobiologyInOut/inst/CITATION | 4 photobiologyInOut-0.4.12/photobiologyInOut/inst/doc/user-guide.R | 35 photobiologyInOut-0.4.12/photobiologyInOut/inst/doc/user-guide.Rnw | 95 photobiologyInOut-0.4.12/photobiologyInOut/inst/doc/user-guide.pdf | 3536 +++++----- photobiologyInOut-0.4.12/photobiologyInOut/inst/staticdocs/index.r | 3 photobiologyInOut-0.4.12/photobiologyInOut/man/read_csi_dat.Rd | 6 photobiologyInOut-0.4.12/photobiologyInOut/man/read_uvspec_disort.Rd |only photobiologyInOut-0.4.12/photobiologyInOut/man/read_uvspec_disort_vesa.Rd |only photobiologyInOut-0.4.12/photobiologyInOut/vignettes/data-vignettes/uvspec-disort.dat |only photobiologyInOut-0.4.12/photobiologyInOut/vignettes/data-vignettes/uvspec-disort.inp |only photobiologyInOut-0.4.12/photobiologyInOut/vignettes/data-vignettes/uvspec-multi.dat |only photobiologyInOut-0.4.12/photobiologyInOut/vignettes/data-vignettes/uvspec-plain-2col.dat |only photobiologyInOut-0.4.12/photobiologyInOut/vignettes/user-guide-concordance.tex | 18 photobiologyInOut-0.4.12/photobiologyInOut/vignettes/user-guide.Rnw | 95 25 files changed, 2213 insertions(+), 1645 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Useful Tools for Structural Equation Modeling
Description: Provides useful tools for structural equation modeling packages.
Author: Terrence D. Jorgensen [aut, cre],
Sunthud Pornprasertmanit [aut],
Patrick Miller [aut],
Alexander Schoemann [aut],
Yves Rosseel [aut],
Corbin Quick [ctb],
Mauricio Garnier-Villarreal [ctb],
James Selig [ctb],
Aaron Boulton [ctb],
Kristopher Preacher [ctb],
Donna Coffman [ctb],
Mijke Rhemtulla [ctb],
Alexander Robitzsch [ctb],
Craig Enders [ctb],
Ruber Arslan [ctb],
Bell Clinton [ctb],
Pavel Panko [ctb],
Edgar Merkle [ctb],
Steven Chesnut [ctb],
Jarrett Byrnes [ctb],
Jason Rights [ctb],
Ylenio Longo [ctb]
Maintainer: Terrence D. Jorgensen <TJorgensen314@gmail.com>
Diff between semTools versions 0.4-13 dated 2016-09-06 and 0.4-14 dated 2016-10-22
semTools-0.4-13/semTools/R/ci.reliability.R |only semTools-0.4-13/semTools/R/impliedStat.R |only semTools-0.4-13/semTools/man/ci.reliability.Rd |only semTools-0.4-13/semTools/man/impliedFactorStat.Rd |only semTools-0.4-13/semTools/man/nullRMSEA.Rd |only semTools-0.4-14/semTools/DESCRIPTION | 18 semTools-0.4-14/semTools/MD5 | 231 semTools-0.4-14/semTools/NAMESPACE | 97 semTools-0.4-14/semTools/R/NET.R | 354 - semTools-0.4-14/semTools/R/PAVranking.R | 1892 ++++---- semTools-0.4-14/semTools/R/TSML.R | 758 +-- semTools-0.4-14/semTools/R/auxiliary.R | 1055 ++-- semTools-0.4-14/semTools/R/clipboard.R | 443 - semTools-0.4-14/semTools/R/compareFit.R | 322 - semTools-0.4-14/semTools/R/dataDiagnosis.R | 264 - semTools-0.4-14/semTools/R/efa.R | 744 +-- semTools-0.4-14/semTools/R/fitIndices.R | 319 - semTools-0.4-14/semTools/R/fitOpenMx.R | 2314 ++++----- semTools-0.4-14/semTools/R/fmi.R | 287 - semTools-0.4-14/semTools/R/imposeStart.R | 46 semTools-0.4-14/semTools/R/indProd.R | 334 - semTools-0.4-14/semTools/R/kd.R | 124 semTools-0.4-14/semTools/R/lisrel2lavaan.R | 3246 +++++++------- semTools-0.4-14/semTools/R/loadingFromAlpha.R | 16 semTools-0.4-14/semTools/R/longInvariance.R | 904 +-- semTools-0.4-14/semTools/R/measurementInvariance.R | 316 - semTools-0.4-14/semTools/R/measurementInvarianceCat.R | 448 - semTools-0.4-14/semTools/R/miPowerFit.R | 370 - semTools-0.4-14/semTools/R/missingBootstrap.R | 1242 ++--- semTools-0.4-14/semTools/R/monteCarloMed.R | 126 semTools-0.4-14/semTools/R/mvrnonnorm.R | 246 - semTools-0.4-14/semTools/R/parcelAllocation.R | 662 +- semTools-0.4-14/semTools/R/partialInvariance.R | 1452 +++--- semTools-0.4-14/semTools/R/partialInvarianceCat.R | 1478 +++--- semTools-0.4-14/semTools/R/permuteMeasEq.R | 1806 +++---- semTools-0.4-14/semTools/R/poolMAlloc.R | 2128 ++++----- semTools-0.4-14/semTools/R/powerAnalysis.R | 298 - semTools-0.4-14/semTools/R/powerAnalysisNested.R | 264 - semTools-0.4-14/semTools/R/powerAnalysisSS.R | 202 semTools-0.4-14/semTools/R/probeInteraction.R | 1344 ++--- semTools-0.4-14/semTools/R/quark.R | 768 +-- semTools-0.4-14/semTools/R/reliability.R | 736 +-- semTools-0.4-14/semTools/R/residualCovariate.R | 28 semTools-0.4-14/semTools/R/runMI.R | 1148 ++-- semTools-0.4-14/semTools/R/singleParamTest.R | 276 - semTools-0.4-14/semTools/R/splitSample.R | 144 semTools-0.4-14/semTools/R/tukeySEM.R | 56 semTools-0.4-14/semTools/R/wald.R | 154 semTools-0.4-14/semTools/R/zzz.R | 18 semTools-0.4-14/semTools/build/vignette.rds |binary semTools-0.4-14/semTools/inst/CITATION | 4 semTools-0.4-14/semTools/man/BootMiss-class.Rd | 82 semTools-0.4-14/semTools/man/Net-class.Rd | 68 semTools-0.4-14/semTools/man/PAVranking.Rd | 288 - semTools-0.4-14/semTools/man/SSpower.Rd | 174 semTools-0.4-14/semTools/man/auxiliary.Rd | 240 - semTools-0.4-14/semTools/man/bsBootMiss.Rd | 242 - semTools-0.4-14/semTools/man/chisqSmallN.Rd |only semTools-0.4-14/semTools/man/clipboard.Rd | 166 semTools-0.4-14/semTools/man/combinequark.Rd | 70 semTools-0.4-14/semTools/man/compareFit.Rd | 94 semTools-0.4-14/semTools/man/dat2way.Rd | 60 semTools-0.4-14/semTools/man/dat3way.Rd | 68 semTools-0.4-14/semTools/man/datCat.Rd | 60 semTools-0.4-14/semTools/man/efaUnrotate.Rd | 96 semTools-0.4-14/semTools/man/exLong.Rd | 62 semTools-0.4-14/semTools/man/findRMSEApower.Rd | 74 semTools-0.4-14/semTools/man/findRMSEApowernested.Rd | 76 semTools-0.4-14/semTools/man/findRMSEAsamplesize.Rd | 74 semTools-0.4-14/semTools/man/findRMSEAsamplesizenested.Rd | 74 semTools-0.4-14/semTools/man/fitMeasuresMx.Rd | 104 semTools-0.4-14/semTools/man/fmi.Rd | 172 semTools-0.4-14/semTools/man/htmt.Rd | 78 semTools-0.4-14/semTools/man/imposeStart.Rd | 290 - semTools-0.4-14/semTools/man/indProd.Rd | 178 semTools-0.4-14/semTools/man/kd.Rd | 150 semTools-0.4-14/semTools/man/kurtosis.Rd | 114 semTools-0.4-14/semTools/man/lavaanStar-class.Rd | 1 semTools-0.4-14/semTools/man/lisrel2lavaan.Rd | 166 semTools-0.4-14/semTools/man/loadingFromAlpha.Rd | 44 semTools-0.4-14/semTools/man/longInvariance.Rd | 200 semTools-0.4-14/semTools/man/mardiaKurtosis.Rd | 92 semTools-0.4-14/semTools/man/mardiaSkew.Rd | 92 semTools-0.4-14/semTools/man/maximalRelia.Rd | 132 semTools-0.4-14/semTools/man/measurementInvariance.Rd | 164 semTools-0.4-14/semTools/man/measurementInvarianceCat.Rd | 144 semTools-0.4-14/semTools/man/miPowerFit.Rd | 194 semTools-0.4-14/semTools/man/monteCarloMed.Rd | 162 semTools-0.4-14/semTools/man/moreFitIndices.Rd | 206 semTools-0.4-14/semTools/man/mvrnonnorm.Rd | 64 semTools-0.4-14/semTools/man/net.Rd | 112 semTools-0.4-14/semTools/man/nullMx.Rd | 70 semTools-0.4-14/semTools/man/nullRmsea.Rd |only semTools-0.4-14/semTools/man/parcelAllocation.Rd | 114 semTools-0.4-14/semTools/man/partialInvariance.Rd | 340 - semTools-0.4-14/semTools/man/permuteMeasEq-class.Rd | 102 semTools-0.4-14/semTools/man/permuteMeasEq.Rd | 598 +- semTools-0.4-14/semTools/man/plotProbe.Rd | 236 - semTools-0.4-14/semTools/man/plotRMSEAdist.Rd | 94 semTools-0.4-14/semTools/man/plotRMSEApower.Rd | 116 semTools-0.4-14/semTools/man/plotRMSEApowernested.Rd | 80 semTools-0.4-14/semTools/man/poolMAlloc.Rd | 270 - semTools-0.4-14/semTools/man/probe2WayMC.Rd | 216 semTools-0.4-14/semTools/man/probe2WayRC.Rd | 166 semTools-0.4-14/semTools/man/probe3WayMC.Rd | 256 - semTools-0.4-14/semTools/man/probe3WayRC.Rd | 216 semTools-0.4-14/semTools/man/reliability.Rd | 170 semTools-0.4-14/semTools/man/reliabilityL2.Rd | 122 semTools-0.4-14/semTools/man/residualCovariate.Rd | 74 semTools-0.4-14/semTools/man/rotate.Rd | 136 semTools-0.4-14/semTools/man/runMI.Rd | 322 - semTools-0.4-14/semTools/man/saturateMx.Rd | 70 semTools-0.4-14/semTools/man/simParcel.Rd | 78 semTools-0.4-14/semTools/man/singleParamTest.Rd | 140 semTools-0.4-14/semTools/man/skew.Rd | 114 semTools-0.4-14/semTools/man/splitSample.rd | 102 semTools-0.4-14/semTools/man/standardizeMx.Rd | 176 semTools-0.4-14/semTools/man/tukeySEM.rd | 108 semTools-0.4-14/semTools/man/twostage-class.Rd | 104 semTools-0.4-14/semTools/man/twostage.Rd | 187 120 files changed, 19630 insertions(+), 19556 deletions(-)
Title: Applications of Empirical Dynamic Modeling from Time Series
Description: A new implementation of EDM algorithms and is based on research software previously developed for internal use in the Sugihara Lab (UCSD/SIO). Contains C++ compiled objects that use time delay embedding to perform state-space reconstruction and nonlinear forecasting and an R interface to those objects using 'Rcpp'. It supports both the simplex projection method from Sugihara & May (1990) <DOI:10.1038/344734a0> and the S-map algorithm in Sugihara (1994) <DOI:10.1098/rsta.1994.0106>. In addition, this package implements convergent cross mapping as described in Sugihara et al. (2012) <DOI:10.1126/science.1227079> and multiview embedding as described in Ye & Sugihara (2016) <DOI:10.1126/science.aag0863>.
Author: Hao Ye [aut, cre],
Adam Clark [aut],
Ethan Deyle [aut],
Oliver Keyes [ctb],
George Sugihara [ctb, ccp]
Maintainer: Hao Ye <hye@ucsd.edu>
Diff between rEDM versions 0.4.7 dated 2016-03-10 and 0.5.3 dated 2016-10-22
rEDM-0.4.7/rEDM/inst/include |only rEDM-0.4.7/rEDM/man/BlockLNLP.Rd |only rEDM-0.4.7/rEDM/man/LNLP.Rd |only rEDM-0.4.7/rEDM/man/Rcpp_BlockLNLP-class.Rd |only rEDM-0.4.7/rEDM/man/Rcpp_LNLP-class.Rd |only rEDM-0.4.7/rEDM/man/Rcpp_Xmap-class.Rd |only rEDM-0.4.7/rEDM/man/Xmap.Rd |only rEDM-0.4.7/rEDM/man/rEDM-package.Rd |only rEDM-0.5.3/rEDM/DESCRIPTION | 19 - rEDM-0.5.3/rEDM/MD5 | 392 ++------------------------- rEDM-0.5.3/rEDM/NAMESPACE | 13 rEDM-0.5.3/rEDM/R/RcppExports.R | 6 rEDM-0.5.3/rEDM/R/block_lnlp_interface.R | 58 ++-- rEDM-0.5.3/rEDM/R/lnlp_interface.R | 2 rEDM-0.5.3/rEDM/R/multiview_interface.R |only rEDM-0.5.3/rEDM/R/rEDM_package.R | 53 +-- rEDM-0.5.3/rEDM/build/vignette.rds |binary rEDM-0.5.3/rEDM/inst/doc/rEDM_tutorial.html | 401 ++++++++++++---------------- rEDM-0.5.3/rEDM/man/block_3sp.Rd | 4 rEDM-0.5.3/rEDM/man/block_lnlp.Rd | 77 ++--- rEDM-0.5.3/rEDM/man/ccm.Rd | 42 +- rEDM-0.5.3/rEDM/man/ccm_means.Rd | 8 rEDM-0.5.3/rEDM/man/compute_stats.Rd |only rEDM-0.5.3/rEDM/man/e054_succession.Rd | 4 rEDM-0.5.3/rEDM/man/e120_biodiversity.Rd | 6 rEDM-0.5.3/rEDM/man/make_block.Rd |only rEDM-0.5.3/rEDM/man/make_surrogate_data.Rd | 10 rEDM-0.5.3/rEDM/man/multiview.Rd |only rEDM-0.5.3/rEDM/man/paramecium_didinium.Rd | 4 rEDM-0.5.3/rEDM/man/rEDM.Rd |only rEDM-0.5.3/rEDM/man/sardine_anchovy_sst.Rd | 4 rEDM-0.5.3/rEDM/man/simplex.Rd | 80 ++--- rEDM-0.5.3/rEDM/man/sockeye_returns.Rd | 4 rEDM-0.5.3/rEDM/man/tentmap_del.Rd | 2 rEDM-0.5.3/rEDM/man/test_nonlinearity.Rd | 6 rEDM-0.5.3/rEDM/man/thrips_block.Rd | 2 rEDM-0.5.3/rEDM/man/two_species_model.Rd | 4 rEDM-0.5.3/rEDM/src/RcppExports.cpp | 15 - rEDM-0.5.3/rEDM/src/block_lnlp.cpp | 11 rEDM-0.5.3/rEDM/src/block_lnlp.h | 1 rEDM-0.5.3/rEDM/src/forecast_machine.cpp | 110 ++++--- rEDM-0.5.3/rEDM/src/forecast_machine.h | 10 42 files changed, 520 insertions(+), 828 deletions(-)
Title: Penalized Likelihood Estimation and Dynamic Prediction under the
Joint Frailty-Copula Models Between Tumour Progression and
Death for Meta-Analysis
Description: Perform the Cox regression and dynamic prediction under the joint frailty-copula model between tumour progression and death for meta-analysis.
The method is applicable for meta-analytic data combining several studies. The data should have information on both terminal event time (e.g., time-to-death) and non-terminal event time (e.g., time-to-tumour progression).
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between joint.Cox versions 2.8 dated 2016-09-30 and 2.9 dated 2016-10-22
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/jointCox.indep.reg.R | 8 ++++---- R/jointCox.reg.R | 8 ++++---- man/F.prediction.Rd | 14 +++++--------- man/F.window.Rd | 14 +++++--------- man/F.windows.Rd | 14 +++++--------- man/joint.Cox-package.Rd | 6 +++--- man/jointCox.indep.reg.Rd | 6 +++--- man/jointCox.reg.Rd | 6 +++--- 10 files changed, 46 insertions(+), 58 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Provides new statistics to locate and tag peaks and valleys in 2D
plots, a statistics to add a label with the equation of a polynomial fitted
with lm(), or R^2 or adjusted R^2 or information criteria for any model
fitted with function lm(). Additional statistics give access to functions
in package 'broom'. Provides a function for flexibly converting time
series to data frames suitable for plotting with ggplot(). In addition
provides two statistics and two geometries useful for diagnosing what data
are passed to compute_group() and compute_panel() functions and to
geometries.
Author: Pedro J. Aphalo [aut, cre],
Kamil Slowikowski [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.2.10 dated 2016-07-30 and 0.2.12 dated 2016-10-22
ggpmisc-0.2.10/ggpmisc/inst/doc/examples.R |only ggpmisc-0.2.10/ggpmisc/inst/doc/examples.Rmd |only ggpmisc-0.2.10/ggpmisc/inst/doc/examples.html |only ggpmisc-0.2.10/ggpmisc/vignettes/examples.Rmd |only ggpmisc-0.2.12/ggpmisc/DESCRIPTION | 30 ++++--- ggpmisc-0.2.12/ggpmisc/MD5 | 74 +++++++++++-------- ggpmisc-0.2.12/ggpmisc/NAMESPACE | 8 ++ ggpmisc-0.2.12/ggpmisc/NEWS | 25 ++++++ ggpmisc-0.2.12/ggpmisc/R/geom-debug.R | 3 ggpmisc-0.2.12/ggpmisc/R/ggpmisc.R | 12 ++- ggpmisc-0.2.12/ggpmisc/R/stat-debug-group.R | 3 ggpmisc-0.2.12/ggpmisc/R/stat-debug-panel.R | 3 ggpmisc-0.2.12/ggpmisc/R/stat-dens2d-filter.r |only ggpmisc-0.2.12/ggpmisc/R/stat-dens2d-labels.r |only ggpmisc-0.2.12/ggpmisc/R/stat-fit-broom.R | 6 - ggpmisc-0.2.12/ggpmisc/R/stat-fit-deviations.R | 3 ggpmisc-0.2.12/ggpmisc/R/stat-fit-residuals.R | 1 ggpmisc-0.2.12/ggpmisc/R/stat-peaks.R | 11 +- ggpmisc-0.2.12/ggpmisc/R/stat-poly-eq.R | 10 +- ggpmisc-0.2.12/ggpmisc/R/try-data-frame.R | 10 +- ggpmisc-0.2.12/ggpmisc/README.md | 23 +++-- ggpmisc-0.2.12/ggpmisc/build/vignette.rds |binary ggpmisc-0.2.12/ggpmisc/inst/doc/debug.R |only ggpmisc-0.2.12/ggpmisc/inst/doc/debug.Rmd |only ggpmisc-0.2.12/ggpmisc/inst/doc/debug.html |only ggpmisc-0.2.12/ggpmisc/inst/doc/examples-dens2d.R |only ggpmisc-0.2.12/ggpmisc/inst/doc/examples-dens2d.Rmd |only ggpmisc-0.2.12/ggpmisc/inst/doc/examples-dens2d.html |only ggpmisc-0.2.12/ggpmisc/inst/doc/user-guide.R |only ggpmisc-0.2.12/ggpmisc/inst/doc/user-guide.Rmd |only ggpmisc-0.2.12/ggpmisc/inst/doc/user-guide.html |only ggpmisc-0.2.12/ggpmisc/inst/staticdocs/index.r | 2 ggpmisc-0.2.12/ggpmisc/man/find_peaks.Rd | 2 ggpmisc-0.2.12/ggpmisc/man/geom_debug.Rd | 2 ggpmisc-0.2.12/ggpmisc/man/ggpmisc-ggproto.Rd | 5 + ggpmisc-0.2.12/ggpmisc/man/ggpmisc-package.Rd | 10 ++ ggpmisc-0.2.12/ggpmisc/man/stat_debug_group.Rd | 2 ggpmisc-0.2.12/ggpmisc/man/stat_debug_panel.Rd | 2 ggpmisc-0.2.12/ggpmisc/man/stat_dens2d_filter.Rd |only ggpmisc-0.2.12/ggpmisc/man/stat_dens2d_labels.Rd |only ggpmisc-0.2.12/ggpmisc/man/stat_fit_deviations.Rd | 2 ggpmisc-0.2.12/ggpmisc/man/stat_fit_glance.Rd | 2 ggpmisc-0.2.12/ggpmisc/man/stat_peaks.Rd | 4 - ggpmisc-0.2.12/ggpmisc/man/stat_poly_eq.Rd | 8 +- ggpmisc-0.2.12/ggpmisc/man/try_data_frame.Rd | 8 +- ggpmisc-0.2.12/ggpmisc/vignettes/debug.Rmd |only ggpmisc-0.2.12/ggpmisc/vignettes/examples-dens2d.Rmd |only ggpmisc-0.2.12/ggpmisc/vignettes/user-guide.Rmd |only 48 files changed, 174 insertions(+), 97 deletions(-)
Title: Sample Size Calculation for RNA-Seq Experimental Design
Description: We propose a procedure for sample size calculation while
controlling false discovery rate for RNA-seq experimental design. Our
procedure depends on the Voom method proposed for RNA-seq data analysis
by Law et al. (2014) <DOI:10.1186/gb-2014-15-2-r29> and the sample size
calculation method proposed for microarray experiments by Liu and Hwang
(2007) <DOI:10.1093/bioinformatics/btl664>. We develop a set of functions
that calculates appropriate sample sizes for two-sample t-test for RNA-seq
experiments with fixed or varied set of parameters. The outputs also contain a
plot of power versus sample size, a table of power at different sample sizes,
and a table of critical test values at different sample sizes.
To install this package, please use
'source("http://bioconductor.org/biocLite.R"); biocLite("ssizeRNA")'.
Author: Ran Bi [aut, cre],
Peng Liu [aut],
Tim Triche [ctb]
Maintainer: Ran Bi <biran@iastate.edu>
Diff between ssizeRNA versions 1.2.6 dated 2016-07-15 and 1.2.8 dated 2016-10-22
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/check.power.R | 18 +++++++++--------- R/sim.counts.R | 30 ++++++++++++++++-------------- R/ssizeRNA_single.R | 16 ++++++++-------- R/ssizeRNA_vary.R | 24 ++++++++++++------------ inst/NEWS.txt | 6 ++++++ inst/doc/ssizeRNA.R | 12 ++++++------ inst/doc/ssizeRNA.Rnw | 30 +++++++++++++++--------------- inst/doc/ssizeRNA.pdf |binary man/check.power.Rd | 12 ++++++------ man/sim.counts.Rd | 18 +++++++++--------- man/ssizeRNA_single.Rd | 12 ++++++------ man/ssizeRNA_vary.Rd | 20 ++++++++++---------- vignettes/ssizeRNA.Rnw | 30 +++++++++++++++--------------- 15 files changed, 136 insertions(+), 128 deletions(-)
Title: Continuous-Lag Spatial Markov Chains
Description: A set of functions is provided for 1) the stratum lengths analysis along a chosen direction, 2) fast estimation of continuous lag spatial Markov chains model parameters and probability computing (also for large data sets), 3) transition probability maps and transiograms drawing, 4) simulation methods for categorical random fields.
Author: Luca Sartore
Maintainer: Luca Sartore <drwolf85@gmail.com>
Diff between spMC versions 0.3.6 dated 2014-12-30 and 0.3.8 dated 2016-10-22
DESCRIPTION | 10 ++++------ MD5 | 31 ++++++++++++++++--------------- NAMESPACE | 2 ++ NEWS | 17 +++++++++++++++++ R/embed_MC.R | 11 ++++++++--- R/image.pemt.R | 6 +++--- R/sim_ck.R | 1 + R/sim_ik.R | 1 + R/sim_mcs.R | 6 +++++- R/sim_path.R | 3 ++- inst |only man/embed_MC.Rd | 2 +- man/image.pemt.Rd | 7 ++++--- man/multi_tpfit.Rd | 2 +- man/spMC-package.Rd | 6 ++++-- man/tpfit.Rd | 2 +- src/mcs.h | 15 ++++++++++----- 17 files changed, 80 insertions(+), 42 deletions(-)
Title: Flexibly Reshape Data: A Reboot of the Reshape Package
Description: Flexibly restructure and aggregate data using just two
functions: melt and 'dcast' (or 'acast').
Author: Hadley Wickham <h.wickham@gmail.com>
Maintainer: Hadley Wickham <h.wickham@gmail.com>
Diff between reshape2 versions 1.4.1 dated 2014-12-06 and 1.4.2 dated 2016-10-22
DESCRIPTION | 11 ++++++----- LICENSE | 2 +- MD5 | 46 +++++++++++++++++++++++----------------------- NAMESPACE | 4 +++- R/RcppExports.R | 2 +- R/reshape.r | 4 +++- inst/CITATION | 2 +- man/add_margins.Rd | 3 ++- man/cast.Rd | 5 +++-- man/colsplit.Rd | 3 ++- man/french_fries.Rd | 3 ++- man/guess_value.Rd | 3 ++- man/margins.Rd | 3 ++- man/melt.Rd | 3 ++- man/melt.array.Rd | 9 +++++---- man/melt.data.frame.Rd | 8 ++++---- man/melt.default.Rd | 8 ++++---- man/melt.list.Rd | 8 ++++---- man/melt_check.Rd | 3 ++- man/parse_formula.Rd | 3 ++- man/recast.Rd | 3 ++- man/smiths.Rd | 3 ++- man/tips.Rd | 3 ++- src/RcppExports.cpp | 30 +++++++++++++----------------- 24 files changed, 93 insertions(+), 79 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that Armadillo
requires a fairly recent compiler; for the g++ family at least version 4.6.*
is required.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.7.400.2.0 dated 2016-08-25 and 0.7.500.0.0 dated 2016-10-22
ChangeLog | 19 + DESCRIPTION | 12 MD5 | 38 +- README.md | 4 inst/NEWS.Rd | 10 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/armadillo_bits/Mat_meat.hpp | 2 inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/arrayops_meat.hpp | 9 inst/include/armadillo_bits/auxlib_bones.hpp | 22 + inst/include/armadillo_bits/auxlib_meat.hpp | 260 +++++++++++++++- inst/include/armadillo_bits/diskio_meat.hpp | 23 - inst/include/armadillo_bits/fn_elem.hpp | 6 inst/include/armadillo_bits/fn_qz.hpp | 11 inst/include/armadillo_bits/operator_cube_times.hpp | 34 ++ inst/include/armadillo_bits/subview_cube_each_bones.hpp | 11 inst/include/armadillo_bits/subview_cube_each_meat.hpp | 79 ++++ inst/include/armadillo_bits/subview_elem1_meat.hpp | 2 vignettes/RcppArmadillo.bib | 41 +- 20 files changed, 508 insertions(+), 81 deletions(-)
Title: A Fast, Easy-to-Use Tool for Manipulating Tables in Databases
and a Wrapper of MADlib
Description: Provides an R interface for the Pivotal Data stack
running on 'PostgreSQL', 'Greenplum' or 'Apache HAWQ (incubating)'
databases with parallel and distributed computation ability for big data
processing. 'PivotalR' provides an R interface to various database
operations on tables or views. These operations are almost the same as
the corresponding native R operations. Thus users of R do not need
to learn 'SQL' when they operate on objects in the database. It also
provides a wrapper for 'Apache MADlib (incubating)', which is an open-
source library for parallel and scalable in-database analytics.
Author: Predictive Analytics Team at Pivotal Inc.
<user@madlb.incubator.apache.org>, with contributions from Data Science Team
at Pivotal Inc.
Maintainer: Rahul Iyer <riyer@pivotal.io>
Diff between PivotalR versions 0.1.17.45 dated 2015-01-03 and 0.1.18.2 dated 2016-10-22
PivotalR-0.1.17.45/PivotalR/tests/test-examples.r |only PivotalR-0.1.17.45/PivotalR/tests/test-madlib_glm.r |only PivotalR-0.1.18.2/PivotalR/DESCRIPTION | 46 +- PivotalR-0.1.18.2/PivotalR/MD5 | 234 +++++++------ PivotalR-0.1.18.2/PivotalR/NAMESPACE | 149 ++++++-- PivotalR-0.1.18.2/PivotalR/R/PivotalR.R | 7 PivotalR-0.1.18.2/PivotalR/R/db_conn-rpostgresql.R | 5 PivotalR-0.1.18.2/PivotalR/R/generic.cv.R | 1 PivotalR-0.1.18.2/PivotalR/R/madlib-glm.R | 20 - PivotalR-0.1.18.2/PivotalR/R/madlib-kmeans.R |only PivotalR-0.1.18.2/PivotalR/R/madlib-lda.R |only PivotalR-0.1.18.2/PivotalR/R/madlib-lm.R | 8 PivotalR-0.1.18.2/PivotalR/R/madlib-randomForest.R |only PivotalR-0.1.18.2/PivotalR/R/madlib-rpart.R | 17 PivotalR-0.1.18.2/PivotalR/R/madlib-svm.R |only PivotalR-0.1.18.2/PivotalR/R/method-delete_.R | 9 PivotalR-0.1.18.2/PivotalR/R/testing.R | 15 PivotalR-0.1.18.2/PivotalR/R/utilities.R | 6 PivotalR-0.1.18.2/PivotalR/R/utility-conn_attr.R | 12 PivotalR-0.1.18.2/PivotalR/R/utility-generic.R | 2 PivotalR-0.1.18.2/PivotalR/R/utility-madlib.R | 42 +- PivotalR-0.1.18.2/PivotalR/README.md | 7 PivotalR-0.1.18.2/PivotalR/build/vignette.rds |binary PivotalR-0.1.18.2/PivotalR/data/abalone.RData |binary PivotalR-0.1.18.2/PivotalR/data/null.data.RData |binary PivotalR-0.1.18.2/PivotalR/inst/doc/pivotalr.pdf |binary PivotalR-0.1.18.2/PivotalR/man/aggregate-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/aic.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/arith-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/array.len.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/arraydb.to.arrayr.Rd | 12 PivotalR-0.1.18.2/PivotalR/man/as.db.data.frame-methods.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/as.environment.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/as.factor-methods.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/by-methods.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/cbind2.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/clean.madlib.temp.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/coef.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/compare-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/conn.eql.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/conn.id.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/connection-info.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/content.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/crossprod.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/db.Rcrossprod-class.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/db.Rquery-class.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/db.connect.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/db.data.frame-class.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/db.data.frame.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/db.disconnect.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/db.existsObject.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/db.list.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/db.obj-class.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/db.objects.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/db.q.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/db.search.path.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/db.table-class.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/db.view-class.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/delete-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/dim-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/eql-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/extract-replace-methods.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/func-methods.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/generic.bagging.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/generic.cv.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/getTree.rf.madlib.Rd |only PivotalR-0.1.18.2/PivotalR/man/groups.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/ifelse.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/is.db.data.frame.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/is.factor-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/is.na-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/key.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/logical-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/madlib.arima.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/madlib.elnet.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/madlib.glm.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/madlib.kmeans.Rd |only PivotalR-0.1.18.2/PivotalR/man/madlib.lda.Rd |only PivotalR-0.1.18.2/PivotalR/man/madlib.lm.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/madlib.randomForest.Rd |only PivotalR-0.1.18.2/PivotalR/man/madlib.rpart.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/madlib.summary.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/madlib.svm.Rd |only PivotalR-0.1.18.2/PivotalR/man/margins.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/merge-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/na.action.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/names-methods.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/perplexity.lda.madlib.Rd |only PivotalR-0.1.18.2/PivotalR/man/pivotalr.Rd | 8 PivotalR-0.1.18.2/PivotalR/man/pkg-package.Rd | 55 +-- PivotalR-0.1.18.2/PivotalR/man/plot.dt.madlib.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/predict.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/predict.arima.madlib.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/predict.bagging.model.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/predict.dt.madlib.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/predict.elnet.madlib.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/predict.lda.madlib.Rd |only PivotalR-0.1.18.2/PivotalR/man/predict.rf.madlib.Rd |only PivotalR-0.1.18.2/PivotalR/man/preview.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/print-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/print.arima.madlib.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/print.dt.madlib.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/print.elnet.madlib.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/print.lm.madlib.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/print.logregr.madlib.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/print.none.obj.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/print.rf.madlib.Rd |only PivotalR-0.1.18.2/PivotalR/man/print.summary.madlib.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/residuals.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/row_actions.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/sample-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/scale-methods.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/sort-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/subset-methods.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/summary.arima.madlib.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/summary.elnet.madlib.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/summary.lm.madlib.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/summary.logregr.madlib.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/text.dt.madlib.Rd | 2 PivotalR-0.1.18.2/PivotalR/man/type-cast.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/unique-methods.Rd | 4 PivotalR-0.1.18.2/PivotalR/man/vcov.Rd | 2 PivotalR-0.1.18.2/PivotalR/tests/testthat |only 123 files changed, 508 insertions(+), 377 deletions(-)
Title: Nomograms for High-Dimensional Cox Models
Description: Build nomograms for high-dimensional Cox models, with support for
reproducible model validation, calibration, and comparison.
Author: Miaozhu Li <miaozhu.li@duke.edu>, Nan Xiao <me@nanx.me>
Maintainer: Nan Xiao <me@nanx.me>
Diff between hdnom versions 4.1 dated 2016-08-05 and 4.2 dated 2016-10-22
DESCRIPTION | 6 +++--- MD5 | 17 +++++++++-------- README.md | 25 +++++++++++++++++++++++-- inst/CITATION |only inst/doc/hdnom.Rmd | 9 +++++---- inst/doc/hdnom.html | 19 +++++++++++-------- vignettes/hdnom.Rmd | 9 +++++---- vignettes/hdnom.bib | 11 +++++++++++ vignettes/hdnom.css | 2 +- vignettes/header.html | 2 +- 10 files changed, 69 insertions(+), 31 deletions(-)
Title: Graph-Constrained Estimation and Hypothesis Tests
Description: Use the graph-constrained estimation (Grace) procedure to estimate graph-guided linear regression coefficients and use the Grace/GraceI/GraceR tests to perform graph-guided hypothesis tests on the association between the response and the predictors.
Author: Sen Zhao
Maintainer: Sen Zhao <sen-zhao@sen-zhao.com>
Diff between Grace versions 0.4.3 dated 2016-10-15 and 0.5 dated 2016-10-22
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/cvGrace.R | 14 ++++++++++++++ R/grace.R | 20 +++++++++++++++++++- R/grace.test.R | 47 +++++++++++++++++++++++++++++++++++++++++++---- R/make.L.R | 8 ++++++++ man/grace.test.Rd | 16 ++++++++++++---- 8 files changed, 109 insertions(+), 22 deletions(-)
Title: Rstudio Addin for Version Control and Assignment Management
using Git
Description: An Rstudio addin for version control that allows users to clone
repositories, create and delete branches, and sync forks on GitHub, GitLab, etc.
Furthermore, the addin uses the GitLab API to allow instructors to create
forks and merge requests for all students/teams with one click of a button.
Author: Vincent Nijs [aut, cre],
Sanjiv Erat [aut]
Maintainer: Vincent Nijs <vnijs@ucsd.edu>
Diff between gitgadget versions 0.2.0 dated 2016-09-14 and 0.2.1 dated 2016-10-22
DESCRIPTION | 19 ++++++++----- MD5 | 26 +++++++++++++---- NAMESPACE | 6 ++++ NEWS.md |only R/gadget.R | 24 ++++++++++++++-- R/git.R | 76 ++++++++++++++++++++++++++++++++++++++++++++++------ README.md | 2 - build |only inst/doc |only man/assign_work.Rd |only man/collect_work.Rd |only man/create_group.Rd |only man/create_repo.Rd |only man/fetch_work.Rd |only man/gitgadget.Rd | 5 ++- vignettes |only 16 files changed, 132 insertions(+), 26 deletions(-)
Title: Unconditional Exact Test
Description: Performs unconditional exact tests and power calculations for 2x2 contingency tables. Unconditional exact tests are often more powerful than conditional exact tests and asymptotic tests.
Author: Peter Calhoun [aut, cre]
Maintainer: Peter Calhoun <calhoun.peter@gmail.com>
Diff between Exact versions 1.6 dated 2015-05-25 and 1.7 dated 2016-10-22
DESCRIPTION | 16 +- MD5 | 30 +++-- NAMESPACE | 3 R/binom.CI.R |only R/binomialCode.R | 271 ++++++++---------------------------------------- R/boschloo_TX.R |only R/csmApprox_TX.R |only R/csmMod_Tbls.R |only R/csm_Tbls.R |only R/exact.test.R | 183 +++++++++++++++----------------- R/fisher.2x2.R | 7 - R/maxPvalue.R |only R/multinomialCode.R | 124 ++++++++------------- R/power.exact.test.R | 81 +++++++------- R/santner_TX.R |only R/zpooled_TX.R |only R/zunpooled_TX.R |only build |only man/Exact-package.Rd | 74 +++++-------- man/exact.test.Rd | 156 ++++++++++----------------- man/power.exact.test.Rd | 111 +++++-------------- 21 files changed, 386 insertions(+), 670 deletions(-)
Title: R Package for Analyzing Endorsement Experiments
Description: This R package implements the statistical model proposed by Bullock, Imai, and Shapiro (2011; Political Analysis) to analyze endorsement experiments. Endorsement experiments are a survey methodology for eliciting truthful responses to sensitive questions. This methodology is helpful when measuring support for socially sensitive political actors such as militant groups. The model is fitted with the Markov chain Monte Carlo algorithm and produces the output containing draws from the posterior distribution.
Author: Yuki Shiraito [aut, cre], Kosuke Imai [aut], Bryn Rosenfeld [ctb]
Maintainer: Yuki Shiraito <shiraito@princeton.edu>
Diff between endorse versions 1.4.1 dated 2014-05-04 and 1.5.0 dated 2016-10-22
ChangeLog | 1 DESCRIPTION | 13 MD5 | 12 NAMESPACE | 6 R/endorse.R | 1599 ++++++++++++++++++++++++++++---------------------------- man/endorse.Rd | 1605 +++++++++++++++++++++++++++++---------------------------- src/endorse.c | 30 + 7 files changed, 1688 insertions(+), 1578 deletions(-)
Title: Convert from UTC to Local Time for United States Counties
Description: Inputs date-times in Coordinated Universal Time (UTC)
and converts to a local date-time and local date for US counties, based on
each county's Federal Information Processing Standard (FIPS) code.
This work was supported in part by grants from the National Institute of
Environmental Health Sciences (R00ES022631) and the National Science
Foundation (1331399).
Author: Brooke Anderson [aut, cre],
Zhiming Guo [ctb]
Maintainer: Brooke Anderson <brooke.anderson@colostate.edu>
Diff between countytimezones versions 0.1.0 dated 2016-06-13 and 1.0.0 dated 2016-10-22
DESCRIPTION | 18 ++++++++++------ MD5 | 25 ++++++++++++----------- NEWS.md |only R/add_local_time.R | 17 ++++++++++++++- R/data.R | 8 ------- README.md | 45 ++++++++++++++++++++++++++---------------- build/vignette.rds |binary data/county_tzs.rda |binary data/floyd.rda |binary inst/doc/countytimezones.R | 12 ++++++++--- inst/doc/countytimezones.Rmd | 19 ++++++++++++++--- inst/doc/countytimezones.html | 41 ++++++++++++++++++++------------------ man/county_tzs.Rd | 8 ------- vignettes/countytimezones.Rmd | 19 ++++++++++++++--- 14 files changed, 131 insertions(+), 81 deletions(-)
More information about countytimezones at CRAN
Permanent link
Title: Optimal and Fast Univariate k-Means Clustering
Description: A dynamic programming algorithm for optimal univariate k-means
clustering. Minimizing the sum of squares of within-cluster distances, the
algorithm guarantees optimality and reproducibility. Its advantage over
heuristic k-means algorithms in efficiency and accuracy is increasingly
pronounced as the number of clusters k increases. It provides an alternative
to heuristic k-means algorithms for univariate clustering.
Author: Joe Song [aut, cre], Haizhou Wang [aut]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between Ckmeans.1d.dp versions 3.4.6-3 dated 2016-10-05 and 3.4.6-4 dated 2016-10-22
DESCRIPTION | 8 +++--- MD5 | 19 +++++++------- NEWS | 27 +++++++++++++++++++++ R/ahist.R |only R/visualize.R | 47 ++---------------------------------- man/Ckmeans.1d.dp-package.Rd | 2 - man/Ckmeans.1d.dp.Rd | 5 +++ man/ahist.Rd | 55 +++++++++++++++++++++++++++++++++++-------- man/plot.Ckmeans.1d.dp.Rd | 14 +++------- man/print.Ckmeans.1d.dp.Rd | 7 +++-- src/Ckmeans.1d.dp.h | 1 11 files changed, 105 insertions(+), 80 deletions(-)