Title: A Statistically Sound data.frame Processor/Conditioner
Description: A data.frame processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner.
Prepares variables so that data has fewer exceptional cases, making
it easier to safely use models in production. Common problems 'vtreat' defends
against: Inf, NA, too many categorical levels, rare categorical levels, new
categorical levels (levels seen during application, but not during training).
'vtreat::prepare' should be used as you would use 'model.matrix'.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>
Diff between vtreat versions 0.5.27 dated 2016-08-17 and 0.5.28 dated 2016-10-24
vtreat-0.5.27/vtreat/man/makekWayCrossValidationOrderedByColumn.Rd |only vtreat-0.5.28/vtreat/DESCRIPTION | 10 vtreat-0.5.28/vtreat/MD5 | 86 ++--- vtreat-0.5.28/vtreat/NAMESPACE | 1 vtreat-0.5.28/vtreat/R/deviationFact.R | 16 vtreat-0.5.28/vtreat/R/effectTreatmentC.R | 8 vtreat-0.5.28/vtreat/R/effectTreatmentN.R | 8 vtreat-0.5.28/vtreat/R/outOfSample.R | 144 ++++---- vtreat-0.5.28/vtreat/R/prevalenceFact.R | 8 vtreat-0.5.28/vtreat/R/utils.R | 7 vtreat-0.5.28/vtreat/R/vtreat.R | 49 +- vtreat-0.5.28/vtreat/R/vtreatImpl.R | 55 +-- vtreat-0.5.28/vtreat/README.md | 82 ++-- vtreat-0.5.28/vtreat/build/vignette.rds |binary vtreat-0.5.28/vtreat/inst/doc/vtreat.Rmd | 4 vtreat-0.5.28/vtreat/inst/doc/vtreat.html | 172 ++++------ vtreat-0.5.28/vtreat/inst/doc/vtreatCrossFrames.Rmd | 2 vtreat-0.5.28/vtreat/inst/doc/vtreatCrossFrames.html | 120 +++--- vtreat-0.5.28/vtreat/inst/doc/vtreatGrouping.html | 10 vtreat-0.5.28/vtreat/inst/doc/vtreatOverfit.html | 74 +--- vtreat-0.5.28/vtreat/inst/doc/vtreatRareLevels.R |only vtreat-0.5.28/vtreat/inst/doc/vtreatRareLevels.Rmd |only vtreat-0.5.28/vtreat/inst/doc/vtreatRareLevels.html |only vtreat-0.5.28/vtreat/inst/doc/vtreatScaleMode.html | 66 +-- vtreat-0.5.28/vtreat/inst/doc/vtreatSignificance.html | 28 - vtreat-0.5.28/vtreat/inst/doc/vtreatSplitting.html | 10 vtreat-0.5.28/vtreat/inst/doc/vtreatVariableTypes.Rmd | 19 - vtreat-0.5.28/vtreat/inst/doc/vtreatVariableTypes.html | 108 +++--- vtreat-0.5.28/vtreat/man/buildEvalSets.Rd | 18 - vtreat-0.5.28/vtreat/man/designTreatmentsC.Rd | 8 vtreat-0.5.28/vtreat/man/designTreatmentsN.Rd | 8 vtreat-0.5.28/vtreat/man/designTreatmentsZ.Rd | 10 vtreat-0.5.28/vtreat/man/getSplitPlanAppLabels.Rd | 10 vtreat-0.5.28/vtreat/man/mkCrossFrameCExperiment.Rd | 8 vtreat-0.5.28/vtreat/man/mkCrossFrameNExperiment.Rd | 8 vtreat-0.5.28/vtreat/man/prepare.Rd | 2 vtreat-0.5.28/vtreat/man/problemAppPlan.Rd | 17 vtreat-0.5.28/vtreat/man/vtreat-package.Rd | 4 vtreat-0.5.28/vtreat/tests/testthat/testExpmtDesign.R | 27 - vtreat-0.5.28/vtreat/tests/testthat/testPC.R |only vtreat-0.5.28/vtreat/tests/testthat/testParallel.R | 8 vtreat-0.5.28/vtreat/tests/testthat/testStability.R | 2 vtreat-0.5.28/vtreat/tests/testthat/testZW.R | 3 vtreat-0.5.28/vtreat/vignettes/vtreat.Rmd | 4 vtreat-0.5.28/vtreat/vignettes/vtreatCrossFrames.Rmd | 2 vtreat-0.5.28/vtreat/vignettes/vtreatRareLevels.Rmd |only vtreat-0.5.28/vtreat/vignettes/vtreatVariableTypes.Rmd | 19 - 47 files changed, 619 insertions(+), 626 deletions(-)
Title: Generating Synthetic Versions of Sensitive Microdata for
Statistical Disclosure Control
Description: A tool for producing synthetic versions of microdata containing confidential information so that they are safe to be released to users for exploratory analysis. The key objective of generating synthetic data is to replace sensitive original values with synthetic ones causing minimal distortion of the statistical information contained in the data set. Variables, which can be categorical or continuous, are synthesised one-by-one using sequential modelling. Replacements are generated by drawing from conditional distributions fitted to the original data using parametric or classification and regression trees models. Data are synthesised via the function syn() which can be largely automated, if default settings are used, or with methods defined by the user. Optional parameters can be used to influence the disclosure risk and the analytical quality of the synthesised data.
Author: Beata Nowok, Gillian M Raab, Joshua Snoke and Chris Dibben
Maintainer: Beata Nowok <beata.nowok@gmail.com>
Diff between synthpop versions 1.2-1 dated 2016-03-15 and 1.3-0 dated 2016-10-24
DESCRIPTION | 8 MD5 | 60 +-- NAMESPACE | 32 - NEWS | 62 ++- R/IO.r | 267 ++++++------- R/compare.syn.r | 10 R/functions.syn.r | 147 +++++-- R/methods.syn.r | 46 ++ R/multi.compare.syn.r |only R/padModel.syn.r | 10 R/sampler.syn.r | 120 +++--- R/syn.r | 355 +++++++++++------ R/syn.strata.r |only R/utility.syn.r | 913 +++++++++++++++++++++++++++------------------- build/vignette.rds |binary data/SD2011.rda |binary inst/CITATION |only inst/doc/synthpop.pdf |binary man/compare.fit.synds.Rd | 4 man/compare.synds.Rd | 9 man/glm.synds.Rd | 15 man/multi.compare.Rd |only man/replicated.uniques.Rd | 5 man/sdc.Rd | 7 man/summary.fit.synds.Rd | 11 man/summary.synds.Rd | 5 man/syn.Rd | 86 +++- man/syn.nested.Rd |only man/syn.polr.Rd | 2 man/syn.polyreg.Rd | 2 man/synthpop-package.Rd | 4 man/tab.utility.Rd |only man/utility.synds.Rd | 5 man/write.syn.Rd | 7 34 files changed, 1344 insertions(+), 848 deletions(-)
Title: Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Description: Provides an abstraction for managing, installing,
and switching between sets of installed R packages. This allows users to
maintain multiple package libraries simultaneously, e.g. to maintain
strict, package-version-specific reproducibility of many analyses, or
work within a development/production release paradigm. Introduces a
generalized package installation process which supports multiple repository
and non-repository sources and tracks package provenance.
Author: Gabriel Becker[aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between switchr versions 0.10.14 dated 2016-05-22 and 0.11.0 dated 2016-10-24
switchr-0.10.14/switchr/inst/cranarchivetest.R |only switchr-0.10.14/switchr/inst/examples/localcheckout.R |only switchr-0.10.14/switchr/inst/gamvsmgcvtest.R |only switchr-0.10.14/switchr/inst/oldlib.R |only switchr-0.10.14/switchr/inst/sinfo3.0.2.txt |only switchr-0.10.14/switchr/inst/switchr.Rmd |only switchr-0.10.14/switchr/inst/talk2015.html |only switchr-0.10.14/switchr/inst/talks/BarugLightning.html |only switchr-0.10.14/switchr/inst/talks/BarugLightning.pdf |only switchr-0.10.14/switchr/inst/talks/BarugLightning.tex |only switchr-0.10.14/switchr/inst/talks/BarugLightning2.html |only switchr-0.10.14/switchr/inst/talks/BarugLightningOld.html |only switchr-0.10.14/switchr/inst/talks/BarugTalk.pdf |only switchr-0.10.14/switchr/inst/winbug.R |only switchr-0.10.14/switchr/inst/windowsbugdat.txt |only switchr-0.10.14/switchr/inst/windowsbugdat2.txt |only switchr-0.11.0/switchr/DESCRIPTION | 12 +-- switchr-0.11.0/switchr/MD5 | 44 +++-------- switchr-0.11.0/switchr/R/accessors.R | 16 ++-- switchr-0.11.0/switchr/R/biocManifest.R | 5 - switchr-0.11.0/switchr/R/cmethods.R | 2 switchr-0.11.0/switchr/build/vignette.rds |binary switchr-0.11.0/switchr/inst/doc/switchrvign.R | 49 ++++-------- switchr-0.11.0/switchr/inst/doc/switchrvign.Rnw | 30 ------- switchr-0.11.0/switchr/inst/doc/switchrvign.pdf |binary switchr-0.11.0/switchr/man/BiocSVNManifest.Rd | 5 - switchr-0.11.0/switchr/man/archive_retries.Rd | 3 switchr-0.11.0/switchr/man/cmethods.Rd | 5 - switchr-0.11.0/switchr/man/manifest_methods.Rd | 2 switchr-0.11.0/switchr/tests/winpath.R | 55 ++++++-------- switchr-0.11.0/switchr/vignettes/switchrvign.Rnw | 30 ------- 31 files changed, 83 insertions(+), 175 deletions(-)
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, ctb],
Wouter Thielen [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between quantmod versions 0.4-6 dated 2016-08-28 and 0.4-7 dated 2016-10-24
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- R/getOptionChain.R | 6 ++---- man/getSymbols.MySQL.Rd | 2 +- man/quantmod-package.Rd | 6 +++--- 5 files changed, 16 insertions(+), 17 deletions(-)
Title: One Rule Machine Learning Classification Algorithm with
Enhancements
Description: Implements the One Rule (OneR) Machine Learning classification algorithm with enhancements for sophisticated handling of numeric data and missing values together with extensive diagnostic functions. It is useful as a baseline for machine learning models and the rules are often helpful heuristics.
Author: Holger von Jouanne-Diedrich
Maintainer: Holger von Jouanne-Diedrich <holger.jouanne-diedrich@h-ab.de>
Diff between OneR versions 2.0 dated 2016-08-12 and 2.1 dated 2016-10-24
DESCRIPTION | 10 ++++---- MD5 | 20 ++++++++-------- NAMESPACE | 1 NEWS | 11 +++++++++ R/OneR.R | 64 ++++++++++++++++++++++++++++++++++++++++------------- R/OneR_main.R | 4 +-- build/vignette.rds |binary inst/doc/OneR.Rmd | 12 ++++----- inst/doc/OneR.html | 40 +++++++++++++++++++-------------- man/eval_model.Rd | 18 +++++++++++++- vignettes/OneR.Rmd | 12 ++++----- 11 files changed, 129 insertions(+), 63 deletions(-)
Title: Printing Floating Point Numbers in a Human-Friendly Format
Description: Print vectors (and data frames) of floating point numbers
using a non-scientific format optimized for human readers. Vectors
of numbers are rounded using significant digits, aligned at the
decimal point, and all zeros trailing the decimal point are dropped.
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between lucid versions 1.3 dated 2015-07-02 and 1.4 dated 2016-10-24
lucid-1.3/lucid/NEWS |only lucid-1.3/lucid/README.md |only lucid-1.3/lucid/data/antibiotic.txt.gz |only lucid-1.3/lucid/inst/doc/lucid_printing.Rnw |only lucid-1.3/lucid/inst/doc/lucid_printing.pdf |only lucid-1.3/lucid/vignettes/lucid_printing-concordance.tex |only lucid-1.3/lucid/vignettes/lucid_printing.Rnw |only lucid-1.4/lucid/DESCRIPTION | 19 - lucid-1.4/lucid/MD5 | 35 +-- lucid-1.4/lucid/NAMESPACE | 36 +-- lucid-1.4/lucid/R/antibiotic.R |only lucid-1.4/lucid/R/lucid.r | 86 ++++++- lucid-1.4/lucid/R/vc.r | 117 ++++++++-- lucid-1.4/lucid/build/vignette.rds |binary lucid-1.4/lucid/data/antibiotic.txt |only lucid-1.4/lucid/inst/doc/lucid_printing.R | 39 ++- lucid-1.4/lucid/inst/doc/lucid_printing.Rmd |only lucid-1.4/lucid/inst/doc/lucid_printing.html |only lucid-1.4/lucid/man/antibiotic.Rd | 75 ++---- lucid-1.4/lucid/man/lucid.Rd | 48 +--- lucid-1.4/lucid/man/vc.Rd | 57 ++-- lucid-1.4/lucid/tests |only lucid-1.4/lucid/vignettes/lucid.bib | 173 ++++++++------- lucid-1.4/lucid/vignettes/lucid_printing.Rmd |only 24 files changed, 428 insertions(+), 257 deletions(-)
Title: Tools to Evaluate DNA Profile Evidence
Description: Tools to determine DNA profile Weight of Evidence.
For further information see the 'likeLTD' guide provided,
or Balding, D.J. (2013) <DOI:10.1073/pnas.1219739110>.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele <c.steele.11@ucl.ac.uk>
Diff between likeLTD versions 6.1.0 dated 2016-05-30 and 6.1.1 dated 2016-10-24
DESCRIPTION | 10 MD5 | 56 R/hypothesis-peaks.R | 1298 +++++++++--------- R/maximize-peaks.R | 1694 +++++++++++------------ R/reports-peaks.R | 2082 ++++++++++++++--------------- R/reports.R | 4 build/vignette.rds |binary inst/doc/likeLTDguide.pdf |binary inst/doc/usage.pdf |binary inst/extdata/hammer/hammer-CSP.csv | 10 inst/extdata/hammer/hammer-reference.csv | 8 inst/extdata/hammer/space-CSP.csv | 10 inst/extdata/hammer/space-reference.csv | 8 inst/extdata/nodropin/hammer-CSP.csv | 10 inst/extdata/nodropin/hammer-reference.csv | 8 inst/extdata/nodropout/CSP.csv | 10 inst/extdata/nodropout/reference.csv | 4 inst/extdata/novictim/hammer-CSP.csv | 10 inst/extdata/novictim/hammer-reference.csv | 4 man/CSP.heights.plot.Rd | 16 man/allele.report.peaks.Rd | 16 man/get.likely.genotypes.peaks.Rd | 44 man/locus.likes.peaks.Rd | 44 man/optimisation.params.peaks.Rd | 38 man/output.report.peaks.Rd | 44 man/peaks.results.plot.Rd | 44 man/read.known.profiles.Rd | 16 man/read.peaks.profile.Rd | 16 src/maximizePeaks.cpp | 5 29 files changed, 2757 insertions(+), 2752 deletions(-)
Title: Miscellaneous Functions for the USGS INL Project Office
Description: A collection of functions for creating high-level graphics,
performing raster-based analysis, processing MODFLOW-based models, and
overlaying multi-polygon objects. Used to support packages and scripts written
by researchers at the United States Geological Survey (USGS)
Idaho National Laboratory (INL) Project Office.
Author: Jason Fisher [aut, cre]
Maintainer: Jason Fisher <jfisher@usgs.gov>
Diff between inlmisc versions 0.2.1 dated 2016-10-15 and 0.2.2 dated 2016-10-24
inlmisc-0.2.1/inlmisc/NEWS |only inlmisc-0.2.2/inlmisc/DESCRIPTION | 8 ++++---- inlmisc-0.2.2/inlmisc/LICENSE.note |only inlmisc-0.2.2/inlmisc/MD5 | 23 ++++++++++++++--------- inlmisc-0.2.2/inlmisc/NAMESPACE | 1 + inlmisc-0.2.2/inlmisc/NEWS.md |only inlmisc-0.2.2/inlmisc/R/ReadCodeChunks.R |only inlmisc-0.2.2/inlmisc/R/ReadModflowBinary.R | 16 ++++++++-------- inlmisc-0.2.2/inlmisc/R/ReplaceInTemplate.R | 4 ++-- inlmisc-0.2.2/inlmisc/R/zzz.R | 2 +- inlmisc-0.2.2/inlmisc/README.md | 10 +++++----- inlmisc-0.2.2/inlmisc/inst/CITATION |only inlmisc-0.2.2/inlmisc/inst/misc |only inlmisc-0.2.2/inlmisc/man/ReadCodeChunks.Rd |only inlmisc-0.2.2/inlmisc/man/ReadModflowBinary.Rd | 6 +++--- inlmisc-0.2.2/inlmisc/man/ReplaceInTemplate.Rd | 4 ++-- 16 files changed, 40 insertions(+), 34 deletions(-)
Title: Quality Control for Graphics in R
Description: Functions to generate
graphics files, compare them with "model" files,
and report the results, including visual and textual
diffs of any differences.
Author: Stephen Gardiner and Paul Murrell
Maintainer: Paul Murrell <paul@stat.auckland.ac.nz>
Diff between graphicsQC versions 1.0-7 dated 2016-03-03 and 1.0-8 dated 2016-10-24
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/doc/graphicsqc.bib | 2 +- inst/doc/graphicsqc.pdf |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Creating Continuously Integrated Package Repositories from
Manifests
Description: Repository based tools for department and analysis level
reproducibility. 'GRANBase' allows creation of custom branched, continuous
integration-ready R repositories, including incremental testing of only packages
which have changed versions since the last repository build.
Author: Gabriel Becker[aut,cre], Cory Barr [cre,ctb]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between GRANBase versions 1.1.14 dated 2016-05-22 and 1.2.0 dated 2016-10-24
GRANBase-1.1.14/GRANBase/inst/GRAN/session.rda |only GRANBase-1.1.14/GRANBase/inst/GRAN/testBioc.R |only GRANBase-1.1.14/GRANBase/inst/manualTests/startup.Rs |only GRANBase-1.1.14/GRANBase/inst/todo.txt |only GRANBase-1.2.0/GRANBase/DESCRIPTION | 6 GRANBase-1.2.0/GRANBase/MD5 | 28 - GRANBase-1.2.0/GRANBase/NAMESPACE | 2 GRANBase-1.2.0/GRANBase/R/Utilities.R | 38 + GRANBase-1.2.0/GRANBase/R/accessors.R | 20 GRANBase-1.2.0/GRANBase/R/buildBranchesInRepo.R | 391 +++++++++---------- GRANBase-1.2.0/GRANBase/R/clear.R | 2 GRANBase-1.2.0/GRANBase/R/makeSrcDirs.R | 2 GRANBase-1.2.0/GRANBase/R/migrateToFinalRepo.R | 50 ++ GRANBase-1.2.0/GRANBase/R/testPackages.R | 150 ++++--- GRANBase-1.2.0/GRANBase/build/vignette.rds |binary GRANBase-1.2.0/GRANBase/inst/doc/GRAN-Overview.pdf |binary GRANBase-1.2.0/GRANBase/man/staging-methods.Rd | 12 17 files changed, 426 insertions(+), 275 deletions(-)
Title: Variance Stabilization by Data-Driven Haar-Fisz (for
Microarrays)
Description: Contains the normalizing and variance stabilizing
Data-Driven Haar-Fisz algorithm. Also contains related algorithms
for simulating from certain microarray gene intensity models and
evaluation of certain transformations. Contains cDNA and shipping
credit flow data.
Author: Efthimios Motakis [aut],
Guy Nason [aut, cre],
Piotr Fryzlewicz [aut]
Maintainer: Guy Nason <g.p.nason@bristol.ac.uk>
Diff between DDHFm versions 1.1.1 dated 2013-10-31 and 1.1.2 dated 2016-10-24
DESCRIPTION | 17 +++++++++-------- MD5 | 22 ++++++++++++---------- NAMESPACE | 4 ++++ build/vignette.rds |binary data/ShipCreditFlow.rda |only data/cdna.rda |binary data/datalist | 1 + inst/CHANGES | 2 ++ inst/doc/DDHFm.pdf |binary man/DDHFm.Rd | 13 +++++++++++-- man/ShipCreditFlow.Rd |only vignettes/DDHFm-cdna-ddhfm.pdf |binary vignettes/DDHFm-cdna-vsn.pdf |binary 13 files changed, 39 insertions(+), 20 deletions(-)
Title: Linear Regression Based on Linear Structure Between Covariates
Description: Linear regression based on a recursive structural equation model
(explicit multiples correlations) found by a MCMC algorithm. It permits to face
highly correlated covariates. Variable selection is included (by lasso,
elastic net, etc.). It also provides some graphical tools for basic
statistics (Boxplot with confidence intervals, etc) and regression trees.
Author: Clement THERY [aut, cre],
Christophe BIERNACKI [ctb],
Gaetan LORIDANT [ctb],
Florian WATRIN [ctb],
Quentin GRIMONPREZ [ctb],
Vincent KUBICKI [ctb],
Samuel BLANCK [ctb],
Jeremie KELLNER [ctb]
Maintainer: Clement THERY <corregeous@correg.org>
Diff between CorReg versions 1.1.1 dated 2015-12-09 and 1.1.9 dated 2016-10-24
DESCRIPTION | 8 ++--- MD5 | 30 ++++++++++-------- NAMESPACE | 4 ++ NEWS | 1 R/BoxPlot.R | 83 +++++++++++++++++++++++++++++++--------------------- R/Hist.R |only R/MSE_loc.R | 2 - R/R2Z.R | 2 - R/cleanZ.R | 18 +++++------ R/cleanZtest.R | 11 +++++- R/correg.R | 2 - R/structureFinder.R | 33 ++++++++++++-------- man/BoxPlot.Rd | 8 ++--- man/Hist.Rd |only man/MSE_loc.Rd | 2 - man/cleanZ.Rd |only man/cleanZtest.Rd |only src/rechercheZ.cpp | 38 +++++++++++++++++++++++ 18 files changed, 159 insertions(+), 83 deletions(-)
Title: Tau-Leaping Stochastic Simulation
Description: Implements adaptive tau leaping to approximate the
trajectory of a continuous-time stochastic process as
described by Cao et al. (2007) The Journal of Chemical Physics
<doi:10.1063/1.2745299>. This package is based upon work
supported by NSF DBI-0906041 and NIH K99-GM104158 to Philip
Johnson and NIH R01-AI049334 to Rustom
Antia.
Author: Philip Johnson
Maintainer: Philip Johnson <plfj@umd.edu>
Diff between adaptivetau versions 2.2 dated 2014-11-19 and 2.2-1 dated 2016-10-24
DESCRIPTION | 21 ++++++++++--------- MD5 | 12 +++++------ NEWS | 9 +++++++- build/vignette.rds |binary inst/doc/adaptivetau.pdf |binary src/Rwrappers.h | 7 +++++- src/adaptivetau.cpp | 50 ++++++++++++++++++++++++----------------------- 7 files changed, 57 insertions(+), 42 deletions(-)
Title: Bayesian Spatial Survival Analysis with Parametric Proportional
Hazards Models
Description: Bayesian inference for parametric proportional hazards spatial
survival models; flexible spatial survival models.
Author: Benjamin M. Taylor and Barry S. Rowlingson
Additional contributions
Ziyu Zheng
Maintainer: Benjamin M. Taylor <b.taylor1@lancaster.ac.uk>
Diff between spatsurv versions 0.9-12 dated 2016-06-29 and 0.9-14 dated 2016-10-24
DESCRIPTION | 8 MD5 | 50 +-- NAMESPACE | 5 R/BsplineHaz.R | 106 +++---- R/calibratemcmc.R | 384 +++++++++++++------------- R/circulant.R | 14 R/multiWayHaz.R |only R/nonspatial_log_likelihood_and_derivatives.R | 139 ++++----- R/spatgrid.R | 90 +++--- R/spatsurvMisc.R | 126 ++++---- R/survspat.R | 282 +++++++++---------- README.md | 4 inst/CITATION | 5 man/BsplineHaz.Rd | 30 +- man/QuadApprox.Rd | 2 man/blockDiag.Rd |only man/circulant.matrix.Rd | 2 man/fixParHaz.Rd |only man/gencens.Rd | 2 man/getOptCellwidth.Rd | 2 man/inference.control.Rd | 2 man/insert.Rd |only man/invtransformweibull.Rd | 2 man/multiWayHaz.Rd |only man/plot.FFTgrid.Rd |only man/setupHazard.Rd | 2 man/survspat.Rd | 2 man/transformweibull.Rd | 2 tests/test_survspat.R | 16 - 29 files changed, 652 insertions(+), 625 deletions(-)
Title: Penalized Quantile Regression
Description: Performs penalized quantile regression for LASSO, SCAD and MCP functions including group penalties. Provides a function that automatically generates lambdas and evaluates different models with cross validation or BIC, including a large p version of BIC.
Author: Ben Sherwood [aut, cre], Adam Maidman [ctb]
Maintainer: Ben Sherwood <ben.sherwood@ku.edu>
Diff between rqPen versions 1.4 dated 2016-04-21 and 1.5 dated 2016-10-24
DESCRIPTION | 10 - LICENSE | 4 MD5 | 14 +- NEWS | 4 R/Adamsfunc.R | 143 +++++++++++++++++++++ R/mainFunctions.R | 19 ++ man/rq.group.fit.Rd | 4 src/QCD.cpp | 340 +++++++++++++++++++++++++++++++++++++++++++++++++++- 8 files changed, 516 insertions(+), 22 deletions(-)
Title: Tuning of the Latent Dirichlet Allocation Models Parameters
Description: For this first version only metrics to estimate the best fitting
number of topics are implemented.
Author: Murzintcev Nikita [aut, cre]
Maintainer: Murzintcev Nikita <nikita@lreis.ac.cn>
Diff between ldatuning versions 0.1.0 dated 2015-09-16 and 0.2.0 dated 2016-10-24
DESCRIPTION | 13 ++-- LICENSE | 2 MD5 | 28 ++++---- NAMESPACE | 2 R/ldatuning.R | 3 R/main.R | 40 +++++++----- build/vignette.rds |binary inst/doc/topics.R | 4 + inst/doc/topics.Rmd | 16 +++-- inst/doc/topics.html | 136 +++++++++++++++++++++++++++++++------------ man/Deveaud2014.Rd | 2 man/FindTopicsNumber.Rd | 12 ++- man/FindTopicsNumber_plot.Rd | 8 +- man/ldatuning.Rd | 5 - vignettes/topics.Rmd | 19 +++--- 15 files changed, 189 insertions(+), 101 deletions(-)
Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Implementations of functions which have been introduced in
R since version 3.0.0. The backports are conditionally exported which
results in R resolving the function names to the version shipped with R (if
available) and uses the implemented backports as fallback. This way package
developers can make use of the new functions without worrying about the
minimum required R version.
Author: Michel Lang <michellang@gmail.com>
Maintainer: Michel Lang <michellang@gmail.com>
Diff between backports versions 1.0.3 dated 2016-06-28 and 1.0.4 dated 2016-10-24
backports-1.0.3/backports/R/anyNA.r |only backports-1.0.3/backports/R/dir.exists.r |only backports-1.0.3/backports/R/endsWith.r |only backports-1.0.3/backports/R/file.x.r |only backports-1.0.3/backports/R/lengths.r |only backports-1.0.3/backports/R/startsWith.r |only backports-1.0.3/backports/R/strrep.r |only backports-1.0.3/backports/R/trimws.r |only backports-1.0.3/backports/tests/testthat |only backports-1.0.3/backports/tests/testthat.R |only backports-1.0.4/backports/DESCRIPTION | 12 ++-- backports-1.0.4/backports/MD5 | 65 ++++++++++++---------- backports-1.0.4/backports/NAMESPACE | 2 backports-1.0.4/backports/NEWS.md | 7 ++ backports-1.0.4/backports/R/anyNA.R |only backports-1.0.4/backports/R/dir.exists.R |only backports-1.0.4/backports/R/endsWith.R |only backports-1.0.4/backports/R/file.info.R |only backports-1.0.4/backports/R/file.mode.R |only backports-1.0.4/backports/R/file.mtime.R |only backports-1.0.4/backports/R/file.size.R |only backports-1.0.4/backports/R/hasName.R |only backports-1.0.4/backports/R/lengths.R |only backports-1.0.4/backports/R/startsWith.R |only backports-1.0.4/backports/R/strrep.R |only backports-1.0.4/backports/R/trimws.R |only backports-1.0.4/backports/man/anyNA.Rd | 2 backports-1.0.4/backports/man/dir.exists.Rd | 4 - backports-1.0.4/backports/man/endsWith.Rd | 2 backports-1.0.4/backports/man/file.info.Rd |only backports-1.0.4/backports/man/file.size.Rd | 8 +- backports-1.0.4/backports/man/hasName.Rd |only backports-1.0.4/backports/man/lengths.Rd | 4 - backports-1.0.4/backports/man/startsWith.Rd | 2 backports-1.0.4/backports/man/strrep.Rd | 2 backports-1.0.4/backports/man/trimws.Rd | 2 backports-1.0.4/backports/tests/helper |only backports-1.0.4/backports/tests/test_anyNA.R |only backports-1.0.4/backports/tests/test_dir.exists.R |only backports-1.0.4/backports/tests/test_file.info.R |only backports-1.0.4/backports/tests/test_file.mode.R |only backports-1.0.4/backports/tests/test_file.mtime.R |only backports-1.0.4/backports/tests/test_file.size.R |only backports-1.0.4/backports/tests/test_hasName.R |only backports-1.0.4/backports/tests/test_lengths.R |only backports-1.0.4/backports/tests/test_startsWith.R |only backports-1.0.4/backports/tests/test_strrep.R |only backports-1.0.4/backports/tests/test_trimws.R |only 48 files changed, 65 insertions(+), 47 deletions(-)
Title: Survey Planning Tools
Description: Tools for sample survey planning, including sample size calculation, estimation of expected precision for the estimates of totals, and calculation of optimal sample size allocation.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Janis Jukams [aut]
Maintainer: Juris Breidaks <rcsb@csb.gov.lv>
Diff between surveyplanning versions 2.2 dated 2016-10-19 and 2.4 dated 2016-10-24
DESCRIPTION | 8 ++-- MD5 | 18 ++++----- R/dom_optimal_allocation.R | 75 +++++++++++++++++++-------------------- R/expsize.R | 55 ++++++++++++---------------- R/expvar.R | 10 ++--- R/optsize.R | 36 +++++++++--------- R/ratio_dom_optimal_allocation.R | 28 +++++++------- inst/CITATION | 4 +- inst/NEWS | 4 ++ man/surveyplanning-package.Rd | 4 +- 10 files changed, 119 insertions(+), 123 deletions(-)
More information about surveyplanning at CRAN
Permanent link
Title: Dynamic Range Boxes
Description: Improves the concept of multivariate range boxes, which is highly susceptible for outliers and does not consider the distribution of the data. The package uses dynamic range boxes to overcome these problems.
Author: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>,
Wolfgang Trutschnig <Wolfgang.Trutschnig@sbg.ac.at>,
Robert R. Junker <Robert.Junker@sbg.ac.at>,
Jonas Kuppler <Jonas.Kuppler@uni-duesseldorf.de>,
Arne Bathke <Arne.Bathke@sbg.ac.at>
Maintainer: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>
Diff between dynRB versions 0.8 dated 2016-08-01 and 0.9 dated 2016-10-24
DESCRIPTION | 6 - MD5 | 12 +-- R/dynRB-internal.R | 131 +++++++++++++++++++++++++-------- R/dynRB_Pn.R | 122 +++++++++++++++++++----------- R/dynRB_VPa.R | 201 ++++++++++++++++++++++++++++++++------------------- R/dynRB_Vn.R | 110 +++++++++++++++++---------- man/dynRB-package.Rd | 4 - 7 files changed, 382 insertions(+), 204 deletions(-)
Title: Aligned Rank Transform
Description: The Aligned Rank Transform for nonparametric
factorial ANOVAs as described by J. O. Wobbrock,
L. Findlater, D. Gergle, & J. J. Higgins, "The Aligned
Rank Transform for nonparametric factorial analyses
using only ANOVA procedures", CHI 2011 <DOI:10.1145/1978942.1978963>.
Author: Matthew Kay [aut, cre],
Jacob O. Wobbrock [aut]
Maintainer: Matthew Kay <mjskay@umich.edu>
Diff between ARTool versions 0.10.2 dated 2016-03-29 and 0.10.4 dated 2016-10-24
DESCRIPTION | 15 - MD5 | 22 - NEWS | 16 + R/release.questions.R | 20 - build/vignette.rds |binary inst/doc/art-contrasts.R | 4 inst/doc/art-contrasts.Rmd | 591 +++++++++++++++++++++--------------------- inst/doc/art-contrasts.html | 146 ++++++---- inst/doc/art-effect-size.Rmd | 355 ++++++++++++------------- inst/doc/art-effect-size.html | 120 ++++---- vignettes/art-contrasts.Rmd | 591 +++++++++++++++++++++--------------------- vignettes/art-effect-size.Rmd | 355 ++++++++++++------------- 12 files changed, 1172 insertions(+), 1063 deletions(-)