Title: Set of Installed Fonts
Description: Provides a set of fonts with permissive licences. This is
useful when you want to avoid system fonts to make sure your
outputs are reproducible.
Author: Lionel Henry [cre, aut],
RStudio [cph],
George Douros [cph] (Symbola font)
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between fontquiver versions 0.1.0 dated 2016-09-04 and 0.2.0 dated 2016-10-26
fontquiver-0.1.0/fontquiver/R/font-bitstream-vera.R |only fontquiver-0.1.0/fontquiver/R/font-dejavu.R |only fontquiver-0.1.0/fontquiver/man/font_bitstream_vera.Rd |only fontquiver-0.1.0/fontquiver/man/font_dejavu.Rd |only fontquiver-0.2.0/fontquiver/DESCRIPTION | 24 - fontquiver-0.2.0/fontquiver/LICENSE |only fontquiver-0.2.0/fontquiver/MD5 | 39 + fontquiver-0.2.0/fontquiver/NAMESPACE | 17 fontquiver-0.2.0/fontquiver/NEWS.md | 29 + fontquiver-0.2.0/fontquiver/R/font-getters.R |only fontquiver-0.2.0/fontquiver/R/fontset-bitstream-vera.R |only fontquiver-0.2.0/fontquiver/R/fontset-dejavu.R |only fontquiver-0.2.0/fontquiver/R/fontset-liberation.R |only fontquiver-0.2.0/fontquiver/R/fontset-symbola.R |only fontquiver-0.2.0/fontquiver/R/fontset.R |only fontquiver-0.2.0/fontquiver/R/html-dependency.R | 88 ++- fontquiver-0.2.0/fontquiver/R/utils.R | 230 +++++++++- fontquiver-0.2.0/fontquiver/README.md | 125 ++++- fontquiver-0.2.0/fontquiver/inst |only fontquiver-0.2.0/fontquiver/man/font_families.Rd |only fontquiver-0.2.0/fontquiver/man/font_variants.Rd |only fontquiver-0.2.0/fontquiver/man/fonts.Rd |only fontquiver-0.2.0/fontquiver/man/fontset_info.Rd |only fontquiver-0.2.0/fontquiver/man/fontset_list.Rd |only fontquiver-0.2.0/fontquiver/man/fontset_register.Rd |only fontquiver-0.2.0/fontquiver/man/fontset_variants.Rd |only fontquiver-0.2.0/fontquiver/man/htmlFontDependency.Rd | 22 fontquiver-0.2.0/fontquiver/man/splice_fonts.Rd |only fontquiver-0.2.0/fontquiver/tests/testthat/test-fonts.R | 18 fontquiver-0.2.0/fontquiver/tests/testthat/test-html-dependency.R |only 30 files changed, 481 insertions(+), 111 deletions(-)
Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation
(DES) package for R. Designed to be a generic framework, it leverages the
power of 'Rcpp' to boost the performance, turning DES in R feasible. As a
noteworthy characteristic, 'simmer' exploits the concept of trajectory: a
common path in the simulation model for entities of the same type.
Author: Iñaki Ucar [aut, cph, cre],
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer versions 3.4.4 dated 2016-10-06 and 3.5.0 dated 2016-10-26
simmer-3.4.4/simmer/man/resource.Rd |only simmer-3.4.4/simmer/src/activity.cpp |only simmer-3.5.0/simmer/DESCRIPTION | 14 simmer-3.5.0/simmer/MD5 | 181 +-- simmer-3.5.0/simmer/NAMESPACE | 11 simmer-3.5.0/simmer/NEWS.md | 16 simmer-3.5.0/simmer/R/RcppExports.R | 144 ++ simmer-3.5.0/simmer/R/activity.R | 12 simmer-3.5.0/simmer/R/plot.R | 8 simmer-3.5.0/simmer/R/simulator.R | 108 -- simmer-3.5.0/simmer/R/trajectory.R | 319 +++++- simmer-3.5.0/simmer/R/utils.R | 13 simmer-3.5.0/simmer/R/wrap.R | 2 simmer-3.5.0/simmer/TODO | 1 simmer-3.5.0/simmer/inst/doc/A-introduction.html | 62 - simmer-3.5.0/simmer/inst/doc/B-terminology.Rmd | 2 simmer-3.5.0/simmer/inst/doc/B-terminology.html | 8 simmer-3.5.0/simmer/inst/doc/C-trajectories.R | 236 +++- simmer-3.5.0/simmer/inst/doc/C-trajectories.Rmd | 354 +++++- simmer-3.5.0/simmer/inst/doc/C-trajectories.html | 530 +++++++--- simmer-3.5.0/simmer/inst/doc/D-bank-1.html | 4 simmer-3.5.0/simmer/inst/doc/E-queueing-systems.html | 4 simmer-3.5.0/simmer/inst/doc/F-ctmc.html | 4 simmer-3.5.0/simmer/man/activate.Rd |only simmer-3.5.0/simmer/man/add_generator.Rd | 10 simmer-3.5.0/simmer/man/add_resource.Rd | 4 simmer-3.5.0/simmer/man/batch.Rd | 8 simmer-3.5.0/simmer/man/branch.Rd | 6 simmer-3.5.0/simmer/man/clone.Rd | 8 simmer-3.5.0/simmer/man/create_trajectory.Rd | 11 simmer-3.5.0/simmer/man/get_capacity.Rd |only simmer-3.5.0/simmer/man/get_head.Rd | 8 simmer-3.5.0/simmer/man/get_mon.Rd | 10 simmer-3.5.0/simmer/man/get_n_activities.Rd | 6 simmer-3.5.0/simmer/man/get_n_generated.Rd | 6 simmer-3.5.0/simmer/man/get_next_activity.Rd | 2 simmer-3.5.0/simmer/man/join.Rd | 2 simmer-3.5.0/simmer/man/leave.Rd | 6 simmer-3.5.0/simmer/man/log_.Rd |only simmer-3.5.0/simmer/man/now.Rd | 4 simmer-3.5.0/simmer/man/peek.Rd | 4 simmer-3.5.0/simmer/man/plot_attributes.Rd | 2 simmer-3.5.0/simmer/man/plot_evolution_arrival_times.Rd | 2 simmer-3.5.0/simmer/man/plot_resource_usage.Rd | 2 simmer-3.5.0/simmer/man/plot_resource_utilization.Rd | 2 simmer-3.5.0/simmer/man/print_activity.Rd | 2 simmer-3.5.0/simmer/man/renege_in.Rd | 8 simmer-3.5.0/simmer/man/reset.Rd | 4 simmer-3.5.0/simmer/man/rollback.Rd | 6 simmer-3.5.0/simmer/man/run.Rd | 6 simmer-3.5.0/simmer/man/seize.Rd | 15 simmer-3.5.0/simmer/man/select.Rd | 9 simmer-3.5.0/simmer/man/send.Rd |only simmer-3.5.0/simmer/man/set_attribute.Rd | 6 simmer-3.5.0/simmer/man/set_capacity.Rd |only simmer-3.5.0/simmer/man/set_prioritization.Rd | 6 simmer-3.5.0/simmer/man/set_trajectory.Rd |only simmer-3.5.0/simmer/man/simmer.Rd | 4 simmer-3.5.0/simmer/man/timeout.Rd | 6 simmer-3.5.0/simmer/man/wrap.Rd | 4 simmer-3.5.0/simmer/src/RcppExports.cpp | 463 +++++++- simmer-3.5.0/simmer/src/activity.h | 511 ++++++++- simmer-3.5.0/simmer/src/entity.h | 4 simmer-3.5.0/simmer/src/process.cpp | 172 +-- simmer-3.5.0/simmer/src/process.h | 175 ++- simmer-3.5.0/simmer/src/resource.cpp | 24 simmer-3.5.0/simmer/src/resource.h | 20 simmer-3.5.0/simmer/src/simmer.h | 17 simmer-3.5.0/simmer/src/simmer_rcpp.cpp | 204 +++ simmer-3.5.0/simmer/src/simulator.h | 72 - simmer-3.5.0/simmer/tests/testthat/test-chaining.R | 2 simmer-3.5.0/simmer/tests/testthat/test-plot.R | 6 simmer-3.5.0/simmer/tests/testthat/test-simmer-generator.R | 14 simmer-3.5.0/simmer/tests/testthat/test-simmer-resource-preemption.R | 16 simmer-3.5.0/simmer/tests/testthat/test-simmer-resource-priorities.R | 6 simmer-3.5.0/simmer/tests/testthat/test-simmer-resource-schedule.R | 18 simmer-3.5.0/simmer/tests/testthat/test-simmer-resource.R | 29 simmer-3.5.0/simmer/tests/testthat/test-simmer.R | 18 simmer-3.5.0/simmer/tests/testthat/test-simulation-1.R | 8 simmer-3.5.0/simmer/tests/testthat/test-simulation-2.R | 2 simmer-3.5.0/simmer/tests/testthat/test-trajectory-activate-deactivate.R |only simmer-3.5.0/simmer/tests/testthat/test-trajectory-batch-separate.R | 36 simmer-3.5.0/simmer/tests/testthat/test-trajectory-branch.R | 4 simmer-3.5.0/simmer/tests/testthat/test-trajectory-log.R |only simmer-3.5.0/simmer/tests/testthat/test-trajectory-renege.R | 56 - simmer-3.5.0/simmer/tests/testthat/test-trajectory-rollback.R | 2 simmer-3.5.0/simmer/tests/testthat/test-trajectory-seize-release.R | 44 simmer-3.5.0/simmer/tests/testthat/test-trajectory-select.R | 38 simmer-3.5.0/simmer/tests/testthat/test-trajectory-send-trap.R |only simmer-3.5.0/simmer/tests/testthat/test-trajectory-set-capacity-queue.R |only simmer-3.5.0/simmer/tests/testthat/test-trajectory-set-trajectory-distribution.R |only simmer-3.5.0/simmer/tests/testthat/test-trajectory-setattribute.R | 6 simmer-3.5.0/simmer/tests/testthat/test-trajectory-setprioritization.R | 3 simmer-3.5.0/simmer/tests/testthat/test-trajectory-timeout.R | 2 simmer-3.5.0/simmer/tests/testthat/test-trajectory.R | 30 simmer-3.5.0/simmer/tests/testthat/test-wrap.R | 2 simmer-3.5.0/simmer/vignettes/B-terminology.Rmd | 2 simmer-3.5.0/simmer/vignettes/C-trajectories.Rmd | 354 +++++- 98 files changed, 3418 insertions(+), 1154 deletions(-)
Title: Interface to the iDigBio Data API
Description: An interface to iDigBio's search API that allows downloading
specimen records. Searches are returned as a data.frame. Other functions
such as the metadata end points return lists of information. iDigBio is a US
project focused on digitizing and serving museum specimen collections on the
web. See <https://www.idigbio.org> for information on iDigBio.
Author: Francois Michonneau [aut, cph],
Matthew Collins [aut, cre],
Scott Chamberlain [ctb],
Kevin Love [ctb],
Hem Nalini Morzaria-Luna [ctb]
Maintainer: Matthew Collins <mcollins@acis.ufl.edu>
Diff between ridigbio versions 0.3.3 dated 2016-01-12 and 0.3.4 dated 2016-10-26
DESCRIPTION | 28 ++++++++++++++---------- MD5 | 21 ++++++++++-------- NAMESPACE | 1 R/base.R | 6 ++--- R/idig_build_attrib.R |only R/idig_search.R | 27 ++++++++++++++++++----- R/idig_search_records.R | 35 ++++++++++++++++++++++++++++-- README.md | 2 - man/idig_build_attrib.Rd |only man/idig_search.Rd | 4 +-- man/idig_search_records.Rd | 32 ++++++++++++++++++++++++++- tests/testthat/test-idig_build_attrib.R |only tests/testthat/test-idig_search_records.R | 20 +++++++++++++++-- 13 files changed, 140 insertions(+), 36 deletions(-)
Title: Fits Psychometric Functions for Multiple Groups
Description: Quickly fits and plots psychometric functions (normal, logistic,
Weibull or any or any function defined by the user) for multiple groups.
Author: Linares Daniel [aut, cre],
López-Moliner Joan [aut]
Maintainer: Linares Daniel <danilinares@gmail.com>
Diff between quickpsy versions 0.1.3 dated 2016-06-13 and 0.1.4 dated 2016-10-26
DESCRIPTION | 6 +++--- MD5 | 21 +++++++++++---------- NAMESPACE | 1 + R/plotcurves_.R | 11 +++++++---- R/plotthresholds_.R | 2 +- R/quickpsy.R | 5 ++--- R/quickpsy_.R | 3 ++- R/quickreadfiles.R | 3 ++- R/thresholds.R | 13 +++---------- README.md |only man/quickpsy.Rd | 5 ++--- man/thresholds.Rd | 15 ++++++--------- 12 files changed, 40 insertions(+), 45 deletions(-)
Title: Heller-Heller-Gorfine Tests of Independence and Equality of
Distributions
Description: Heller-Heller-Gorfine ('HHG') tests are a set of powerful statistical
tests of multivariate k-sample homogeneity and independence. For the univariate
case, the package also offers implementations of the 'MinP DDP' and 'MinP ADP'
tests, which are consistent against all continuous alternatives but are
distribution-free, and are thus much faster to apply.
Author: Barak Brill & Shachar Kaufman, based in part on an earlier
implementation by Ruth Heller and Yair Heller.
Maintainer: Barak Brill <barakbri@mail.tau.ac.il>
Diff between HHG versions 1.5.1 dated 2015-07-14 and 2.0 dated 2016-10-26
DESCRIPTION | 18 MD5 | 60 +- NAMESPACE | 2 R/HHG_additional_univariate.R |only R/HHG_extras.R | 3 R/HHG_univariate.R | 792 +++++++++++++++++++++++----- R/HHG_utils.R | 56 + build/vignette.rds |binary inst/doc/HHG.R | 310 ++++++++++ inst/doc/HHG.Rmd | 347 +++++++++++- inst/doc/HHG.html | 322 ++++++++++- man/Fast.independence.test.Rd |only man/Fast.independence.test.nulltable.Rd |only man/HHG-package.Rd | 56 + man/hhg.example.datagen.Rd | 6 man/hhg.univariate.ind.combined.test.Rd | 80 ++ man/hhg.univariate.ind.nulltable.Rd | 53 + man/hhg.univariate.ind.pvalue.Rd | 45 + man/hhg.univariate.ind.stat.Rd | 66 ++ man/hhg.univariate.ks.combined.test.Rd | 82 ++ man/hhg.univariate.ks.nulltable.Rd | 41 + man/hhg.univariate.ks.pvalue.Rd | 34 + man/hhg.univariate.ks.stat.Rd | 45 + man/hhg.univariate.nulltable.from.mstats.Rd | 49 + man/nr_bins_equipartition.Rd |only src/HHG.cpp | 134 +++- src/HHG.h | 19 src/Makevars.win | 4 src/SequentialTest.cpp | 1 src/StatsComputer.cpp | 650 +++++++++++++++++++--- src/StatsComputer.h | 15 vignettes/HHG.Rmd | 457 ++++++++++++---- vignettes/style.css | 8 33 files changed, 3193 insertions(+), 562 deletions(-)
Title: Sustainable Transport Planning
Description: Functionality and data access tools for transport planning,
including origin-destination analysis, route allocation and modelling travel
patterns.
Author: Robin Lovelace [aut, cre],
Richard Ellison [aut],
Barry Rowlingson [aut] (Author of overline),
Nick Bearman [aut] (Co-author of gclip),
Malcolm Morgan [aut] (Co-author of angle_diff)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.1.4 dated 2016-08-29 and 0.1.5 dated 2016-10-26
stplanr-0.1.4/stplanr/inst/osm_routenet.R |only stplanr-0.1.4/stplanr/man/cyclestreet_pat.Rd |only stplanr-0.1.4/stplanr/man/graphhopper_pat.Rd |only stplanr-0.1.5/stplanr/DESCRIPTION | 12 stplanr-0.1.5/stplanr/MD5 | 103 +-- stplanr-0.1.5/stplanr/NAMESPACE | 5 stplanr-0.1.5/stplanr/NEWS | 15 stplanr-0.1.5/stplanr/R/RcppExports.R | 2 stplanr-0.1.5/stplanr/R/crs-funs.R | 30 - stplanr-0.1.5/stplanr/R/cyclestreets.R | 2 stplanr-0.1.5/stplanr/R/data.r | 56 + stplanr-0.1.5/stplanr/R/linefuns.R | 71 ++ stplanr-0.1.5/stplanr/R/load-stats19.R | 10 stplanr-0.1.5/stplanr/R/od-funs.R | 167 ++++- stplanr-0.1.5/stplanr/R/osrmfunctions.R | 73 +- stplanr-0.1.5/stplanr/R/overline.R | 4 stplanr-0.1.5/stplanr/R/radiate.R | 8 stplanr-0.1.5/stplanr/R/route-transport-api.R | 47 + stplanr-0.1.5/stplanr/R/routes.R | 284 +++++----- stplanr-0.1.5/stplanr/R/toptail.R | 21 stplanr-0.1.5/stplanr/README.md | 41 - stplanr-0.1.5/stplanr/data/destination_zones.rda |only stplanr-0.1.5/stplanr/data/destinations.rda |only stplanr-0.1.5/stplanr/data/flow_dests.rda |only stplanr-0.1.5/stplanr/inst/doc/introducing-stplanr.html | 41 - stplanr-0.1.5/stplanr/man/angle_diff.Rd | 3 stplanr-0.1.5/stplanr/man/api_pat.Rd |only stplanr-0.1.5/stplanr/man/buff_geo.Rd | 8 stplanr-0.1.5/stplanr/man/destination_zones.Rd |only stplanr-0.1.5/stplanr/man/flow.Rd | 1 stplanr-0.1.5/stplanr/man/flow_dests.Rd |only stplanr-0.1.5/stplanr/man/gprojected.Rd | 1 stplanr-0.1.5/stplanr/man/is_linepoint.Rd | 1 stplanr-0.1.5/stplanr/man/line2df.Rd | 1 stplanr-0.1.5/stplanr/man/line2route.Rd | 15 stplanr-0.1.5/stplanr/man/line_bearing.Rd | 1 stplanr-0.1.5/stplanr/man/line_length.Rd |only stplanr-0.1.5/stplanr/man/line_midpoint.Rd | 3 stplanr-0.1.5/stplanr/man/line_segment.Rd |only stplanr-0.1.5/stplanr/man/n_vertices.Rd | 1 stplanr-0.1.5/stplanr/man/nearest_cyclestreets.Rd | 6 stplanr-0.1.5/stplanr/man/od2line.Rd | 21 stplanr-0.1.5/stplanr/man/od2odf.Rd | 4 stplanr-0.1.5/stplanr/man/od_dist.Rd | 3 stplanr-0.1.5/stplanr/man/onewaygeo.Rd | 2 stplanr-0.1.5/stplanr/man/onewayid.Rd | 2 stplanr-0.1.5/stplanr/man/points2flow.Rd | 1 stplanr-0.1.5/stplanr/man/points2odf.Rd | 1 stplanr-0.1.5/stplanr/man/reproject.Rd | 1 stplanr-0.1.5/stplanr/man/route_cyclestreet.Rd | 51 + stplanr-0.1.5/stplanr/man/route_graphhopper.Rd | 24 stplanr-0.1.5/stplanr/man/route_transportapi_public.Rd | 12 stplanr-0.1.5/stplanr/man/update_line_geometry.Rd | 1 stplanr-0.1.5/stplanr/man/viaroute.Rd | 9 stplanr-0.1.5/stplanr/src/RcppExports.cpp | 18 stplanr-0.1.5/stplanr/tests/testthat/test-calc_catchment.R | 2 stplanr-0.1.5/stplanr/tests/testthat/test-route_cyclestreet.R | 6 stplanr-0.1.5/stplanr/tests/testthat/test-route_graphhopper.R | 8 58 files changed, 793 insertions(+), 406 deletions(-)
Title: D3 JavaScript Scatterplot from R
Description: Creates 'D3' 'JavaScript' scatterplots from 'R' with interactive
features : panning, zooming, tooltips, etc.
Author: Julien Barnier [aut, cre],
Kent Russell [aut, ctb],
Mike Bostock [aut, cph] (d3.js library, http://d3js.org),
Susie Lu [aut, cph] (d3-legend library, http://d3-legend.susielu.com/),
Speros Kokenes [aut, cph] (d3-lasso-plugin library,
https://github.com/skokenes/D3-Lasso-Plugin)
Maintainer: Julien Barnier <julien.barnier@ens-lyon.fr>
Diff between scatterD3 versions 0.6.2 dated 2016-03-24 and 0.7 dated 2016-10-26
scatterD3-0.6.2/scatterD3/inst/htmlwidgets/lib/d3-3.5.6.min.js |only scatterD3-0.6.2/scatterD3/inst/htmlwidgets/lib/d3-legend.min.js |only scatterD3-0.6.2/scatterD3/inst/htmlwidgets/lib/scatterD3.css |only scatterD3-0.7/scatterD3/DESCRIPTION | 8 scatterD3-0.7/scatterD3/MD5 | 59 scatterD3-0.7/scatterD3/NEWS | 23 scatterD3-0.7/scatterD3/R/scatterD3.R | 454 +- scatterD3-0.7/scatterD3/README.md | 74 scatterD3-0.7/scatterD3/build/vignette.rds |binary scatterD3-0.7/scatterD3/inst/doc/introduction.R | 128 scatterD3-0.7/scatterD3/inst/doc/introduction.Rmd | 253 + scatterD3-0.7/scatterD3/inst/doc/introduction.html | 363 +- scatterD3-0.7/scatterD3/inst/htmlwidgets/lib/d3 |only scatterD3-0.7/scatterD3/inst/htmlwidgets/lib/d3-lasso-plugin/lasso.js | 92 scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-arrows.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-axes.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-dots.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-ellipses.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-exports.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-labels.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-lasso.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-legend.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-lines.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-setup.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3-utils.js |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3.css |only scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3.js | 1628 +++------- scatterD3-0.7/scatterD3/inst/htmlwidgets/scatterD3.yaml | 44 scatterD3-0.7/scatterD3/man/scatterD3.Rd | 131 scatterD3-0.7/scatterD3/vignettes/introduction.Rmd | 253 + 30 files changed, 2019 insertions(+), 1491 deletions(-)
Title: Methods for the Indirect Estimation of Bilateral Migration
Description: Indirect methods for estimating bilateral migration flows in the presence of partial or missing data. Methods might be relevant to other categorical data situations on non-migration data, where for example, marginal totals are known and only auxiliary bilateral data is available.
Author: Guy J. Abel
Maintainer: Guy J. Abel <g.j.abel@gmail.com>
Diff between migest versions 1.7.2 dated 2016-05-15 and 1.7.3 dated 2016-10-26
migest-1.7.2/migest/R/fn_migest.R |only migest-1.7.3/migest/DESCRIPTION | 6 ++-- migest-1.7.3/migest/MD5 | 43 +++++++++++++++++++----------- migest-1.7.3/migest/R/block.matrix.R.R |only migest-1.7.3/migest/R/block.sum.R.R |only migest-1.7.3/migest/R/cm2.R |only migest-1.7.3/migest/R/cm3.R |only migest-1.7.3/migest/R/ffs.R |only migest-1.7.3/migest/R/fm.R |only migest-1.7.3/migest/R/ipf2.R |only migest-1.7.3/migest/R/ipf2.b.R.R |only migest-1.7.3/migest/R/ipf3.R |only migest-1.7.3/migest/R/ipf3.qi.R.R |only migest-1.7.3/migest/R/rc9.R |only migest-1.7.3/migest/demo/cfplot_nat.R | 7 ++-- migest-1.7.3/migest/demo/cfplot_reg.R | 8 +++-- migest-1.7.3/migest/demo/cfplot_reg2.R | 24 ++++++++-------- migest-1.7.3/migest/man/block.matrix.Rd |only migest-1.7.3/migest/man/block.sum.Rd |only migest-1.7.3/migest/man/cm2.Rd | 10 +++--- migest-1.7.3/migest/man/cm3.Rd | 8 ++--- migest-1.7.3/migest/man/ffs.Rd | 4 +- migest-1.7.3/migest/man/fm.Rd | 2 - migest-1.7.3/migest/man/ipf2.Rd | 8 ++--- migest-1.7.3/migest/man/ipf2.b.Rd |only migest-1.7.3/migest/man/ipf3.Rd | 6 ++-- migest-1.7.3/migest/man/ipf3.qi.Rd | 8 ++--- migest-1.7.3/migest/man/migest-package.Rd | 4 +- migest-1.7.3/migest/man/rc9.Rd | 10 +++--- migest-1.7.3/migest/man/rc9.fund.Rd | 9 +++--- 30 files changed, 87 insertions(+), 70 deletions(-)
Title: Incremental Decomposition Methods
Description: Incremental Multiple Correspondence Analysis and Principal
Component Analysis.
Author: Alfonso Iodice D' Enza [aut], Angelos Markos [aut, cre], Davide
Buttarazzi [ctb]
Maintainer: Angelos Markos <amarkos@gmail.com>
Diff between idm versions 1.3.1 dated 2016-03-10 and 1.7.1 dated 2016-10-26
DESCRIPTION | 13 - MD5 | 52 +++-- NAMESPACE | 22 +- R/add_es.R | 41 ++-- R/add_svd.R | 3 R/ani_plot.R | 26 ++ R/do_es.r | 5 R/h_exact_mca.r | 46 ++--- R/i_mca.r | 11 - R/i_pca.r | 463 +++++++++++++++++++++++++--------------------------- R/mat_split.r | 5 R/plot.i_mca.R | 23 +- R/plot.i_pca.r | 29 ++- R/plot_fun.R | 20 +- R/r_live_mca.r | 32 +-- R/static_plot.r | 49 +++-- R/update.i_mca.R | 230 ++++++++++++------------- R/update.i_pca.R | 122 ++++++------- data/enron.rda |only man/add_es.Rd | 200 +++++++++++----------- man/enron.Rd |only man/i_mca.Rd | 186 ++++++++++---------- man/i_pca.Rd | 164 +++++++++--------- man/idm.Rd | 62 +++--- man/plot.i_mca.Rd | 40 ++-- man/plot.i_pca.Rd | 101 +++++------ man/update.i_mca.Rd | 119 ++++++------- man/update.i_pca.Rd | 107 ++++++------ 28 files changed, 1127 insertions(+), 1044 deletions(-)
Title: A Few GPU Enabled Functions
Description: Provides R interfaces to a handful of common
functions implemented using the Nvidia CUDA toolkit. Some of the
functions require at least GPU Compute Capability 1.3.
Thanks to Craig Stark at UC Irvine for donating time on his lab's Mac.
Author: Josh Buckner [aut, cre],
Mark Seligman [aut],
Fan Meng [aut],
Justin Wilson [ctb]
Maintainer: Josh Buckner <nullsatz@gmail.com>
Diff between gputools versions 1.0 dated 2015-11-11 and 1.1 dated 2016-10-26
DESCRIPTION | 14 MD5 | 23 NEWS | 5 R/gpuCor.R | 9 configure | 2567 +++++++++++++++++++++++++++--------------------------- configure.ac | 134 +- inst |only src/Makefile.in | 28 src/correlation.h | 3 src/kendall.cu | 154 +-- src/kendall.h | 5 src/rinterface.cu | 5 src/rinterface.h | 3 13 files changed, 1512 insertions(+), 1438 deletions(-)
Title: Dynamic Web-Based Analytics for the Energy Industry
Description: A 'Shiny' web application for energy industry analytics.
Take an overview of the industry, measure Key Performance Indicators,
identify changes in the industry over time, and discover new relationships in the data.
Author: Paul Govan [aut, cre]
Maintainer: Paul Govan <pgovan1@aggienetwork.com>
Diff between eAnalytics versions 0.1.0 dated 2016-07-29 and 0.1.1 dated 2016-10-26
eAnalytics-0.1.0/eAnalytics/inst/images/Dashboard2.png |only eAnalytics-0.1.1/eAnalytics/DESCRIPTION | 12 eAnalytics-0.1.1/eAnalytics/MD5 | 19 eAnalytics-0.1.1/eAnalytics/NEWS.md |only eAnalytics-0.1.1/eAnalytics/R/eAnalytics.R | 2 eAnalytics-0.1.1/eAnalytics/README.md | 58 - eAnalytics-0.1.1/eAnalytics/build |only eAnalytics-0.1.1/eAnalytics/inst/app/rsconnect |only eAnalytics-0.1.1/eAnalytics/inst/app/server.r | 403 +++++++--- eAnalytics-0.1.1/eAnalytics/inst/app/ui.r | 629 ++++++++++------- eAnalytics-0.1.1/eAnalytics/inst/doc |only eAnalytics-0.1.1/eAnalytics/inst/images/Dashboard.png |binary eAnalytics-0.1.1/eAnalytics/vignettes |only 13 files changed, 733 insertions(+), 390 deletions(-)
Title: Beyond the Border
Description: Kernel density estimation dedicated to urban geography.
Author: Psar Analyse Urbaine Insee - Thierry Cornely, Laure Genebes, Arlindo Dos
Santos, Cynthia Faivre, Auriane Renaud and Francois Semecurbe
Maintainer: Arlindo Dos Santos <Arlindo.Dos-Santos@insee.fr>
Diff between btb versions 0.0.7 dated 2016-08-10 and 0.1.2 dated 2016-10-26
btb-0.0.7/btb/R/Class_carroyage.R |only btb-0.0.7/btb/man/Carroyage.Rd |only btb-0.0.7/btb/man/kernel_smoothing.Rd |only btb-0.0.7/btb/man/smoothing_to_grid.Rd |only btb-0.0.7/btb/src/rcpp_lissage.cpp |only btb-0.1.2/btb/DESCRIPTION | 14 +++--- btb-0.1.2/btb/MD5 | 21 +++++----- btb-0.1.2/btb/NAMESPACE | 15 ++++--- btb-0.1.2/btb/R/Grid.R |only btb-0.1.2/btb/R/RcppExports.R | 19 +++++++-- btb-0.1.2/btb/man/Grid-class.Rd |only btb-0.1.2/btb/man/kernelSmoothing.Rd |only btb-0.1.2/btb/man/reunion.Rd | 12 ++--- btb-0.1.2/btb/man/smoothingToGrid.Rd |only btb-0.1.2/btb/src/RcppExports.cpp | 67 +++++++++++++++++++++++--------- btb-0.1.2/btb/src/rcppLissage.cpp |only btb-0.1.2/btb/src/rcppLissageMedian.cpp |only 17 files changed, 99 insertions(+), 49 deletions(-)
More information about tigreBrowserWriter at CRAN
Permanent link
Title: Functions to Support the Multicriteria Decision Aiding Process
Description: Functions which can be useful to support the analyst in the Multicriteria Decision Aiding (MCDA) process involving multiple, conflicting criteria.
Author: Patrick Meyer, Sébastien Bigaret, Richard Hodgett, Alexandru-Liviu Olteanu
Maintainer: Patrick Meyer <patrick.meyer@telecom-bretagne.eu>
Diff between MCDA versions 0.0.12 dated 2015-11-05 and 0.0.13 dated 2016-10-26
DESCRIPTION | 8 +++--- MD5 | 19 ++++++++++---- NAMESPACE | 1 R/pairwiseConsistencyMeasures.R |only R/plotPiecewiseLinearValueFunctions.R | 2 - R/plotRadarPerformanceTable.R | 44 +++++++++++++++++++++++++++------- inst/datasets |only man/pairwiseConsistencyMeasures.Rd |only man/plotRadarPerformanceTable.Rd | 8 ++++-- tests/example.R |only tests/example2.R |only tests/pairwiseConsistencyMeasures.R |only tests/plotRadarPerformanceTable.R | 2 - 13 files changed, 61 insertions(+), 23 deletions(-)
Title: Jane Austen's Complete Novels
Description: Full texts for Jane Austen's 6 completed novels, ready for text
analysis. These novels are "Sense and Sensibility", "Pride and Prejudice",
"Mansfield Park", "Emma", "Northanger Abbey", and "Persuasion".
Author: Julia Silge [aut, cre]
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between janeaustenr versions 0.1.3 dated 2016-10-23 and 0.1.4 dated 2016-10-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 11 ++++++++++- R/austen_books.R | 2 +- tests/testthat/test_austen_books.R | 9 +++++++++ 5 files changed, 28 insertions(+), 10 deletions(-)
Title: Genome-Wide Association Study with SLOPE
Description: Genome-wide association study (GWAS) performed with SLOPE,
short for Sorted L-One Penalized Estimation, a
method for estimating the vector of coefficients in linear model.
In the first step of GWAS, SNPs are clumped according to their correlations and
distances. Then, SLOPE is performed on data where each clump has
one representative.
Author: Damian Brzyski [aut],
Christine Peterson [aut],
Emmanuel J. Candes [aut],
Malgorzata Bogdan [aut],
Chiara Sabatti [aut],
Piotr Sobczyk [cre, aut]
Maintainer: Piotr Sobczyk <piotr.sobczyk@pwr.edu.pl>
Diff between geneSLOPE versions 0.36.6 dated 2016-02-02 and 0.37.0 dated 2016-10-26
geneSLOPE-0.36.6/geneSLOPE/README.md |only geneSLOPE-0.37.0/geneSLOPE/DESCRIPTION | 10 +- geneSLOPE-0.37.0/geneSLOPE/MD5 | 21 ++--- geneSLOPE-0.37.0/geneSLOPE/NAMESPACE | 4 - geneSLOPE-0.37.0/geneSLOPE/R/clump_snps.R | 15 ++- geneSLOPE-0.37.0/geneSLOPE/R/geneSLOPE.R | 6 - geneSLOPE-0.37.0/geneSLOPE/R/identify_clump.R | 32 ++------ geneSLOPE-0.37.0/geneSLOPE/R/select_snps.R | 65 ++++++++++------- geneSLOPE-0.37.0/geneSLOPE/inst/doc/GWASwithSLOPE.html | 39 ++++------ geneSLOPE-0.37.0/geneSLOPE/man/clump_snps.Rd | 5 + geneSLOPE-0.37.0/geneSLOPE/man/geneSLOPE.Rd | 4 - geneSLOPE-0.37.0/geneSLOPE/man/select_snps.Rd | 8 +- 12 files changed, 113 insertions(+), 96 deletions(-)
Title: Fast Utility Function for Time Parsing and Conversion
Description: Fast functions for timestamp
manipulation that avoid system calls and take shortcuts
to facilitate operations on very large data.
Author: Simon Urbanek <simon.urbanek@r-project.org>
Maintainer: Simon Urbanek <simon.urbanek@r-project.org>
Diff between fasttime versions 1.0-1 dated 2015-07-28 and 1.0-2 dated 2016-10-26
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS |only man/fastPOSIXct.Rd | 6 +++--- src/tparse.c | 19 +++++++++++++++---- 5 files changed, 25 insertions(+), 13 deletions(-)
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner <gregor.kastner@wu.ac.at>
Diff between stochvol versions 1.3.1 dated 2016-10-18 and 1.3.2 dated 2016-10-26
DESCRIPTION | 6 - MD5 | 12 +-- NEWS | 6 + R/wrappers.R | 4 - inst/doc/article.pdf |binary inst/doc/heavytails.pdf |binary src/sampler.cpp | 156 ++++++++++++++++++++---------------------------- 7 files changed, 84 insertions(+), 100 deletions(-)
Title: Integrate R with 'RDocumentation.org'
Description: Wraps around the default help functionality in R. Instead of plain documentation files, documentation will now show up as it does on 'RDocumentation.org', a platform that shows R documentation from CRAN, GitHub and Bioconductor, together with informative stats to assess the package quality and possibilities to discuss packages.
Author: Ludovic Vannoorenberghe [cre],
Jonathan Cornelissen [aut],
Hannes Buseyne [ctb],
Filip Schouwenaars [ctb]
Maintainer: Ludovic Vannoorenberghe <ludovic@datacamp.com>
Diff between RDocumentation versions 0.7.0 dated 2016-10-03 and 0.7.1 dated 2016-10-26
RDocumentation-0.7.0/RDocumentation/tests/testthat/test-check-package.R |only RDocumentation-0.7.1/RDocumentation/DESCRIPTION | 19 - RDocumentation-0.7.1/RDocumentation/MD5 | 33 +- RDocumentation-0.7.1/RDocumentation/NAMESPACE | 2 RDocumentation-0.7.1/RDocumentation/NEWS.md | 8 RDocumentation-0.7.1/RDocumentation/R/defaults.R | 12 RDocumentation-0.7.1/RDocumentation/R/install.R | 12 RDocumentation-0.7.1/RDocumentation/R/overrides.R | 161 ++++------ RDocumentation-0.7.1/RDocumentation/R/utils.R | 19 - RDocumentation-0.7.1/RDocumentation/R/view_help.R | 89 ++--- RDocumentation-0.7.1/RDocumentation/R/zzz.R | 1 RDocumentation-0.7.1/RDocumentation/README.md | 10 RDocumentation-0.7.1/RDocumentation/man/check_package.Rd | 2 RDocumentation-0.7.1/RDocumentation/man/documentation.Rd | 4 RDocumentation-0.7.1/RDocumentation/man/install_package.Rd | 4 RDocumentation-0.7.1/RDocumentation/man/view_help.Rd | 6 RDocumentation-0.7.1/RDocumentation/tests/testthat/test-help.R | 89 ++++- RDocumentation-0.7.1/RDocumentation/tests/testthat/test-utils.R |only RDocumentation-0.7.1/RDocumentation/tests/testthat/test-view-help.R |only 19 files changed, 266 insertions(+), 205 deletions(-)
More information about RDocumentation at CRAN
Permanent link
Title: ML and MCMC Methods for Pedigree Reconstruction and Analysis
Description: The primary aim of MasterBayes is to use MCMC techniques to integrate over uncertainty in pedigree configurations estimated from molecular markers and phenotypic data. Emphasis is put on the marginal distribution of parameters that relate the phenotypic data to the pedigree. All simulation is done in compiled C++ for efficiency.
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield <j.hadfield@ed.ac.uk>
Diff between MasterBayes versions 2.53.1 dated 2016-09-07 and 2.54 dated 2016-10-26
DESCRIPTION | 8 +- MD5 | 8 +- R/MCMCped.R | 3 R/getXlist.R | 207 ++++++++++++++++++++++++++++++++++++++++++++++++++++++--- src/MCMCped.cc | 2 5 files changed, 210 insertions(+), 18 deletions(-)
Title: Latent Variable Models
Description: Estimation and simulation of latent variable models.
Author: Klaus K. Holst
Maintainer: Klaus K. Holst <kkho@biostat.ku.dk>
Diff between lava versions 1.4.4 dated 2016-08-13 and 1.4.5 dated 2016-10-26
lava-1.4.4/lava/R/zconfband.R |only lava-1.4.4/lava/R/zimages.R |only lava-1.4.4/lava/R/zksmooth.R |only lava-1.4.4/lava/R/zoperators.R |only lava-1.4.4/lava/R/ztoformula.R |only lava-1.4.4/lava/R/ztr.R |only lava-1.4.5/lava/DESCRIPTION | 16 - lava-1.4.5/lava/INDEX | 31 +- lava-1.4.5/lava/MD5 | 170 ++++++----- lava-1.4.5/lava/NAMESPACE | 36 ++ lava-1.4.5/lava/NEWS | 38 ++ lava-1.4.5/lava/R/Objective.R | 25 - lava-1.4.5/lava/R/addhook.R | 24 + lava-1.4.5/lava/R/assoc.R | 174 +++++++++++ lava-1.4.5/lava/R/backdoor.R |only lava-1.4.5/lava/R/baptize.R | 2 lava-1.4.5/lava/R/bootstrap.R | 3 lava-1.4.5/lava/R/categorical.R | 12 lava-1.4.5/lava/R/children.R | 106 ++++++- lava-1.4.5/lava/R/coef.R | 16 - lava-1.4.5/lava/R/complik.R |only lava-1.4.5/lava/R/confband.R |only lava-1.4.5/lava/R/contr.R |only lava-1.4.5/lava/R/covariance.R | 8 lava-1.4.5/lava/R/describecoef.R | 4 lava-1.4.5/lava/R/diagtest.R | 9 lava-1.4.5/lava/R/distribution.R | 5 lava-1.4.5/lava/R/dsep.R |only lava-1.4.5/lava/R/dsort.R | 13 lava-1.4.5/lava/R/estimate.default.R | 176 ++++++++++- lava-1.4.5/lava/R/estimate.lvm.R | 32 +- lava-1.4.5/lava/R/exogenous.R | 2 lava-1.4.5/lava/R/finalize.R | 5 lava-1.4.5/lava/R/fix.R | 56 ++- lava-1.4.5/lava/R/fixsome.R | 11 lava-1.4.5/lava/R/glmest.R | 25 + lava-1.4.5/lava/R/gof.R | 6 lava-1.4.5/lava/R/img.R |only lava-1.4.5/lava/R/index.sem.R | 6 lava-1.4.5/lava/R/information.R | 15 - lava-1.4.5/lava/R/kappa.R |only lava-1.4.5/lava/R/ksmooth.R |only lava-1.4.5/lava/R/latent.R | 60 +--- lava-1.4.5/lava/R/lava-package.R | 5 lava-1.4.5/lava/R/lmers.R | 8 lava-1.4.5/lava/R/matrices.R | 29 + lava-1.4.5/lava/R/merge.R | 26 + lava-1.4.5/lava/R/modelsearch.R | 48 ++- lava-1.4.5/lava/R/multinomial.R | 157 ---------- lava-1.4.5/lava/R/normal.R | 49 ++- lava-1.4.5/lava/R/operators.R |only lava-1.4.5/lava/R/optims.R | 21 + lava-1.4.5/lava/R/ordinal.R | 6 lava-1.4.5/lava/R/partialcor.R | 29 + lava-1.4.5/lava/R/path.R | 42 ++ lava-1.4.5/lava/R/plot.R | 152 ++++++++-- lava-1.4.5/lava/R/plot.estimate.R | 4 lava-1.4.5/lava/R/print.R | 32 +- lava-1.4.5/lava/R/regression.R | 3 lava-1.4.5/lava/R/sim.R | 342 +++++++++++++---------- lava-1.4.5/lava/R/sim.default.R | 176 +++++++++-- lava-1.4.5/lava/R/summary.R | 22 - lava-1.4.5/lava/R/toformula.R |only lava-1.4.5/lava/R/tr.R |only lava-1.4.5/lava/R/transform.R | 19 + lava-1.4.5/lava/R/utils.R | 58 --- lava-1.4.5/lava/inst/doc/reference.pdf |binary lava-1.4.5/lava/man/backdoor.Rd |only lava-1.4.5/lava/man/children.Rd | 8 lava-1.4.5/lava/man/complik.Rd |only lava-1.4.5/lava/man/confband.Rd | 24 + lava-1.4.5/lava/man/contr.Rd |only lava-1.4.5/lava/man/density.sim.Rd | 10 lava-1.4.5/lava/man/diagtest.Rd | 5 lava-1.4.5/lava/man/dsep.lvm.Rd |only lava-1.4.5/lava/man/dsort.Rd | 5 lava-1.4.5/lava/man/estimate.default.Rd | 31 ++ lava-1.4.5/lava/man/estimate.lvm.Rd | 4 lava-1.4.5/lava/man/images.Rd | 2 lava-1.4.5/lava/man/internal.Rd | 1 lava-1.4.5/lava/man/ksmooth2.Rd | 2 lava-1.4.5/lava/man/lava.options.Rd | 12 lava-1.4.5/lava/man/modelsearch.Rd | 8 lava-1.4.5/lava/man/multinomial.Rd | 1 lava-1.4.5/lava/man/op_concat.Rd | 2 lava-1.4.5/lava/man/op_match.Rd | 2 lava-1.4.5/lava/man/partialcor.Rd | 4 lava-1.4.5/lava/man/path.Rd | 6 lava-1.4.5/lava/man/plot.lvm.Rd | 41 +- lava-1.4.5/lava/man/sim.Rd | 43 +- lava-1.4.5/lava/man/sim.default.Rd | 5 lava-1.4.5/lava/man/toformula.Rd | 2 lava-1.4.5/lava/man/tr.Rd | 9 lava-1.4.5/lava/tests/testthat/test-constrain.R | 8 lava-1.4.5/lava/tests/testthat/test-graph.R |only lava-1.4.5/lava/tests/testthat/test-inference.R | 17 - lava-1.4.5/lava/tests/testthat/test-multigroup.R | 8 97 files changed, 1728 insertions(+), 846 deletions(-)
Title: A Powerful Tool to Quickly Compare Huge Lists and Draw Venn
Diagrams
Description: Compare lists (from 2 to infinite) and plot the results in a Venn diagram if (N<=4) with regulation details. It allows to produce a complete annotated file, merging the annotations of the compared lists. It is also possible to compute an overlaps table to show the overlaps proportions of all the couples of lists and draw proportional Venn diagrams.
Author: Nicolas Cagnard
Maintainer: Nicolas Cagnard <nicolas.cagnard@gmail.com>
Diff between eVenn versions 2.3.3 dated 2016-09-12 and 2.3.4 dated 2016-10-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/evenn.R | 24 ++++++++++++------------ man/eVenn-package.Rd | 4 ++-- 4 files changed, 21 insertions(+), 21 deletions(-)
Title: A Novel Topology-Based Pathway Enrichment Analysis Approach
Description: We described a novel Topology-based pathway enrichment analysis, which integrated the global position of the nodes and the topological property of the pathways in Kyoto Encyclopedia of Genes and Genomes Database.
We also provide some functions to obtain the latest information about pathways to finish pathway enrichment analysis using this method.
Author: Wei Jiang
Maintainer: Wei Jiang <jiangwei@hrbmu.edu.cn>
Diff between TPEA versions 1.0 dated 2016-08-29 and 2.0 dated 2016-10-26
DESCRIPTION | 14 ++++--- INDEX | 34 ++++++++++++++++- MD5 | 84 +++++++++++++++++++++++++++++++++++++++---- NAMESPACE | 6 ++- R/DownloadKGML.R |only R/NodeGene.R |only R/NodeGeneData.R |only R/PathNetwork.R |only R/UPDATE.R |only R/ViewLatestTime.R |only R/filterNode.R |only R/getEntry.R |only R/getGeneFromEnzyme.R |only R/getGeneFromKGene.R |only R/getGeneFromKO.R |only R/getGraphics.R |only R/getKGeneFromEnzyme.R |only R/getKGeneFromKO.R |only R/getNonMetabolicGraph.R |only R/getOrgAndIdType.R |only R/getPathway.R |only R/getProduct.R |only R/getReaction.R |only R/getRelation.R |only R/getSimpleGraph.R |only R/getSubstrate.R |only R/getSubtype.R |only R/getUGraph.R |only R/getUnknowProduct.R |only R/getUnknowReaction.R |only R/getUnknowRelation.R |only R/getUnknowSubstrate.R |only R/getUnknowSubtype.R |only R/importLatesData.R |only R/mapNode.R |only R/simplifyGraph.R |only data/gene2ec.rda |only data/gene2ko.rda |only data/keggGene2gene.rda |only data/node_gene.rda |binary data/num_node_gene_score.rda |binary man/DownloadKGML.Rd |only man/NodeGene.Rd |only man/NodeGeneData.Rd |only man/PathNetwork.Rd |only man/TPEA-package.Rd | 12 ++++-- man/TPEA.Rd | 2 + man/UPDATE.Rd |only man/ViewLatestTime.Rd |only man/filterNode.Rd |only man/gene2ec.Rd |only man/gene2ko.Rd |only man/getEntry.Rd |only man/getGeneFromEnzyme.Rd |only man/getGeneFromKGene.Rd |only man/getGeneFromKO.Rd |only man/getGraphics.Rd |only man/getKGeneFromEnzyme.Rd |only man/getKGeneFromKO.Rd |only man/getNonMetabolicGraph.Rd |only man/getOrgAndIdType.Rd |only man/getPathway.Rd |only man/getProduct.Rd |only man/getReaction.Rd |only man/getRelation.Rd |only man/getSimpleGraph.Rd |only man/getSubstrate.Rd |only man/getSubtype.Rd |only man/getUGraph.Rd |only man/getUnknowProduct.Rd |only man/getUnknowReaction.Rd |only man/getUnknowRelation.Rd |only man/getUnknowSubstrate.Rd |only man/getUnknowSubtype.Rd |only man/importLatesData.Rd |only man/keggGene2gene.Rd |only man/mapNode.Rd |only man/simplifyGraph.Rd |only 78 files changed, 134 insertions(+), 18 deletions(-)
Title: Tools for Analyzing Planar Shape and Associated Patterns
Description: An evolving and growing collection of tools for the quantification, assessment, and comparison of planar shape and pattern. The current flagship functionality is in the spatial decomposition of planar shapes using 'ShrinkShape' to incrementally shrink shapes to extinction while computing area, perimeter, and number of parts at each iteration of shrinking. The spectra of results are returned in graphic and tabular formats. Additional utility tools for handling data are provided and this package will be added to as more tools are created, cleaned-up, and documented.
Author: Tarmo K. Remmel
Maintainer: Tarmo K. Remmel <remmelt@yorku.ca>
Diff between ShapePattern versions 1.0 dated 2016-04-27 and 1.0.1 dated 2016-10-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/batchssr.R | 11 +++-------- R/shpsplitter.R | 12 +++--------- R/ssr.R | 15 +++++++-------- build/partial.rdb |binary 6 files changed, 22 insertions(+), 34 deletions(-)
Title: OCI Based Oracle Database Interface for R
Description: Oracle Database interface (DBI) driver for R.
This is a DBI-compliant Oracle driver based on the OCI.
Author: Denis Mukhin, David A. James and Jake Luciani
Maintainer: Rajendra S. Pingte <rajendra.pingte@oracle.com>
Diff between ROracle versions 1.2-2 dated 2016-02-17 and 1.3-1 dated 2016-10-26
ROracle-1.2-2/ROracle/inst/doc/man/de/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/de/dbSetDataMappings-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/en/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/en/dbSetDataMappings-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/es/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/es/dbSetDataMappings-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/fr/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/fr/dbSetDataMappings-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/it/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/it/dbSetDataMappings-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/ja/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/ja/dbSetDataMappings-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/ko/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/ko/dbSetDataMappings-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/pt_BR/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/pt_BR/dbSetDataMappings-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/zh_CN/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/zh_CN/dbSetDataMappings-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/zh_TW/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/inst/doc/man/zh_TW/dbSetDataMappings-methods.Rd |only ROracle-1.2-2/ROracle/man/dbCallProc-methods.Rd |only ROracle-1.2-2/ROracle/man/dbSetDataMappings-methods.Rd |only ROracle-1.3-1/ROracle/DESCRIPTION | 8 ROracle-1.3-1/ROracle/INSTALL | 62 ROracle-1.3-1/ROracle/MD5 | 47 ROracle-1.3-1/ROracle/NAMESPACE | 8 ROracle-1.3-1/ROracle/NEWS | 22 ROracle-1.3-1/ROracle/R/dbi.R | 33 ROracle-1.3-1/ROracle/R/oci.R | 232 ++ ROracle-1.3-1/ROracle/configure | 18 ROracle-1.3-1/ROracle/configure.ac | 10 ROracle-1.3-1/ROracle/inst/doc/man/en/oracleProc-methods.Rd |only ROracle-1.3-1/ROracle/src/rodbi.c | 1032 +++++++++- ROracle-1.3-1/ROracle/src/rodbi.h | 7 ROracle-1.3-1/ROracle/src/rooci.c | 287 ++ ROracle-1.3-1/ROracle/src/rooci.h | 25 36 files changed, 1623 insertions(+), 168 deletions(-)
Title: Entrez in R
Description: Provides an R interface to the NCBI's EUtils API
allowing users to search databases like GenBank and PubMed, process the
results of those searches and pull data into their R sessions.
Author: David Winter [aut, cre],
Scott Chamberlain [ctb],
Han Guangchun [ctb]
Maintainer: David Winter <david.winter@gmail.com>
Diff between rentrez versions 1.0.2 dated 2016-04-21 and 1.0.4 dated 2016-10-26
DESCRIPTION | 10 - MD5 | 16 +- NEWS | 9 + R/base.r | 5 R/entrez_fetch.r | 17 +- build/vignette.rds |binary inst/doc/rentrez_tutorial.html | 312 +++++++++++++++++++++-------------------- man/entrez_fetch.Rd | 18 +- tests/testthat/test_fetch.r | 4 9 files changed, 218 insertions(+), 173 deletions(-)
Title: Orthogonalizing EM
Description: Solves penalized least squares problems using the orthogonalizing EM algorithm of Xiong et al. (2016) <doi:10.1080/00401706.2015.1054436>. The main fitting function is oem() and the functions cv.oem() and xval.oem() are for cross validation, the latter being an accelerated cross validation function for linear models. The big.oem() function allows for out of memory fitting.
Author: Bin Dai [aut],
Jared Huling [aut, cre],
Yixuan Qiu [ctb]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Diff between oem versions 2.0.2 dated 2016-10-25 and 2.0.3 dated 2016-10-26
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- inst/doc/oem_vignette.html | 42 +++++++++++++++++++++--------------------- src/oem_big.h | 6 +++--- src/oem_dense.h | 6 +++--- src/oem_logistic_dense.h | 6 +++--- src/oem_logistic_sparse.h | 6 +++--- src/oem_sparse.h | 10 +++++----- src/oem_xtx.h | 6 +++--- src/oem_xval_dense.h | 6 +++--- src/utils.cpp | 10 +++++----- 11 files changed, 62 insertions(+), 62 deletions(-)
Title: Integrative Random Forest for Gene Regulatory Network Inference
Description: Provides a flexible integrative algorithm that allows information from prior data, such as protein protein interactions and gene knock-down, to be jointly considered for gene regulatory network inference.
Author: Francesca Petralia [aut, cre],
Pei Wang [aut],
Zhidong Tu [aut],
Jialiang Yang [aut],
Adele Cutler [ctb],
Leo Breiman [ctb],
Andy Liaw [ctb],
Matthew Wiener [ctb]
Maintainer: Francesca Petralia <francesca.petralia@mssm.edu>
Diff between iRafNet versions 0.1-1 dated 2016-01-27 and 1.1-1 dated 2016-10-26
DESCRIPTION | 43 ++++++++++++++++++++++--------------------- MD5 | 20 ++++++++++++++------ NAMESPACE | 9 +++++++-- R/IRafNet_network.R |only R/Run_permutation.R |only R/iRafNet.R | 18 ++++++++++++------ R/iRafNet_permutation.R |only R/roc_curve.R |only man/Run_permutation.Rd |only man/iRafNet.Rd | 27 ++++++++++----------------- man/iRafNet_network.Rd |only man/iRafNet_permutation.Rd |only man/roc_curve.Rd |only src/regTree.c | 12 ++++-------- src/regrf.c | 3 +++ 15 files changed, 72 insertions(+), 60 deletions(-)
Title: Directional Statistics
Description: A collection of R functions for directional data analysis.
Author: Michail Tsagris, Giorgos Athineou, Anamul Sajib
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Directional versions 2.2 dated 2016-08-01 and 2.3 dated 2016-10-26
DESCRIPTION | 8 +- MD5 | 158 ++++++++++++++++++++++----------------------- NAMESPACE | 4 - R/Arotation.R | 2 R/acg.R | 16 +--- R/bic.mixvmf.R | 8 +- R/circ.cor1.R | 6 - R/circ.summary.R | 12 +-- R/circlin.cor.R | 2 R/conc.test.R | 12 +-- R/dirknn.R | 24 +++--- R/dirknn.tune.R | 22 +++--- R/embed.aov.R | 14 +-- R/euclid.R | 12 ++- R/euclid.inv.R | 10 +- R/eul2rot.R | 16 ++-- R/fb.saddle.R | 8 +- R/fishkent.R | 22 +++--- R/ggvm.R | 4 - R/group.gof.R | 2 R/group.vm.R | 14 +-- R/hcf.aov.R | 14 +-- R/hcf.circaov.R | 6 - R/het.aov.R | 10 +- R/het.circaov.R | 6 - R/kent.datacontour.R | 13 +-- R/kent.mle.R | 6 - R/knn.reg.R | 26 +++---- R/knnreg.tune.R | 25 +++---- R/kuiper.R | 6 - R/lambert.R | 2 R/lambert.inv.R | 10 +- R/lr.aov.R | 18 ++--- R/lr.circaov.R | 40 +++++------ R/meandir.test.R | 34 +++------ R/mediandir.R | 16 ++-- R/mediandir_2.R | 5 - R/mix.vmf.R | 38 +++++----- R/mixvmf.contour.R | 4 - R/pvm.R | 18 ++--- R/rayleigh.R | 14 +-- R/rmatrixfisher.R | 8 +- R/rot.matrix.R | 12 +-- R/rsop.R | 4 - R/rvmf.R | 50 +++++++------- R/rvnomises.R | 4 - R/spher.cor.R | 14 +-- R/spher.reg.R | 6 - R/spherconc.test.R | 18 ++--- R/spml.reg.R | 17 +--- R/tang.conc.R | 6 - R/vec.R | 5 + R/visual.check.R | 34 +++------ R/vm.kde.R | 14 +-- R/vmf.R | 12 +-- R/vmf.da.R | 41 +++++------ R/vmf.kde.R | 16 ++-- R/vmf.kerncontour.R | 17 ++-- R/vmfda.pred.R | 11 +-- R/vmfkde.tune.R | 10 +- R/vmkde.tune.R | 4 - R/watson.R | 6 - R/wood.mle.R | 10 +- man/Directional-package.Rd | 6 - man/acg.Rd | 2 man/circ.cor1.Rd | 4 - man/euclid.inv.Rd | 2 man/eul2rot.Rd | 2 man/f.rbing.Rd | 2 man/fb.saddle.Rd | 1 man/kuiper.Rd | 4 - man/meandir.test.Rd | 2 man/rayleigh.Rd | 3 man/rmatrixfisher.Rd | 4 - man/rmixvmf.Rd | 2 man/rot2eul.Rd | 2 man/rvmf.Rd | 4 - man/visual.check.Rd | 38 +++------- man/vmf.kde.Rd | 2 man/wood.mle.Rd | 4 - 80 files changed, 529 insertions(+), 561 deletions(-)
More information about clust.bin.pair at CRAN
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