Title: R Interface to a 'PostGIS' Database
Description: Provides additional functions to the
'RPostgreSQL' package to interface R with a 'PostGIS'-enabled
database, as well as convenient wrappers to common 'PostgreSQL'
queries.
Author: Mathieu Basille [aut],
David Bucklin [aut, cre]
Maintainer: David Bucklin <dbucklin@ufl.edu>
Diff between rpostgis versions 1.0.2 dated 2016-09-26 and 1.0.3 dated 2016-10-28
DESCRIPTION | 8 ++-- MD5 | 55 +++++++++++++++++--------------- NAMESPACE | 1 NEWS | 8 ++++ R/dbAddKey.R | 4 +- R/dbAsDate.R | 1 R/dbColumn.R | 4 +- R/dbComment.R | 8 ++-- R/dbDrop.R | 8 ++-- R/dbIndex.R | 4 +- R/dbSchema.R | 1 R/dbTableInfo.R | 1 R/dbUtils.R | 79 +++++++++++++++++++++++++++++++++++++++++++++-- R/dbVacuum.R | 4 +- R/pgGetBoundary.R | 1 R/pgGetGeom.R | 1 R/pgGetRast.R | 1 R/pgInsert.R | 3 + R/pgInsertize.R | 6 +-- R/pgListGeom.R | 1 R/pgMakePts.R | 2 + R/pgPostGIS.R | 1 R/pgSRID.R | 1 README.md | 2 - man/dbBuildTableQuery.Rd |only man/dbComment.Rd | 4 +- man/dbConnCheck.Rd |only man/dbDrop.Rd | 4 +- man/dbExistsTable.Rd |only man/dbTableNameFix.Rd | 4 +- 30 files changed, 162 insertions(+), 55 deletions(-)
Title: R API for Mixpanel
Description: Provides an interface to many endpoints of Mixpanel's Data Export, Engage and JQL API. The R functions allow for event and profile data export as well as for segmentation, retention, funnel and addiction analysis. Results are always parsed into convenient R objects. Furthermore it is possible to load and update profiles.
Author: Meinhard Ploner [aut, cre, cph],
ProSiebenSat.1 Digital GmbH [cph]
Maintainer: Meinhard Ploner <meinhard.ploner@gmail.com>
Diff between RMixpanel versions 0.4-1 dated 2016-09-21 and 0.5-0 dated 2016-10-28
DESCRIPTION | 14 +++++++------- MD5 | 14 +++++++++----- NAMESPACE | 2 ++ R/mixpanelGetFunnel.R |only R/mixpanelGetFunnelList.R |only R/mixpanelGetRetention.R | 2 +- README.md | 10 ++++++---- build/partial.rdb |binary man/mixpanelGetFunnel.Rd |only man/mixpanelGetFunnelList.Rd |only 10 files changed, 25 insertions(+), 17 deletions(-)
Title: Prototype Object-Based Programming
Description: An object oriented system using object-based, also
called prototype-based, rather than class-based object oriented ideas.
Author: Hadley Wickham [cre],
Gabor Grothendieck [aut],
Louis Kates [aut],
Thomas Petzoldt [aut]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between proto versions 0.3-10 dated 2012-12-22 and 1.0.0 dated 2016-10-28
proto-0.3-10/proto/COPYRIGHTS |only proto-0.3-10/proto/README.debian |only proto-0.3-10/proto/demo/proto.R |only proto-0.3-10/proto/inst/NEWS |only proto-0.3-10/proto/inst/README |only proto-0.3-10/proto/man/graph.proto.Rd |only proto-0.3-10/proto/vignettes/README |only proto-0.3-10/proto/vignettes/Z.cls |only proto-0.3-10/proto/vignettes/cloning3.dot |only proto-0.3-10/proto/vignettes/proto-raw |only proto-0.3-10/proto/vignettes/proto-raw.tex |only proto-1.0.0/proto/DESCRIPTION | 33 proto-1.0.0/proto/MD5 | 62 proto-1.0.0/proto/NAMESPACE | 14 proto-1.0.0/proto/NEWS.md |only proto-1.0.0/proto/R/graph.proto.R | 76 - proto-1.0.0/proto/R/proto.R | 467 +++++-- proto-1.0.0/proto/README.md |only proto-1.0.0/proto/build |only proto-1.0.0/proto/demo/00Index | 4 proto-1.0.0/proto/demo/proto-gWidgets.R |only proto-1.0.0/proto/demo/proto-vignette.R | 396 +++--- proto-1.0.0/proto/inst/ReleaseNotes.txt |only proto-1.0.0/proto/inst/THANKS | 2 proto-1.0.0/proto/inst/doc/proto.Rnw | 1380 +++++++++++++++++++++- proto-1.0.0/proto/inst/doc/proto.pdf |binary proto-1.0.0/proto/inst/doc/protoref.Rnw | 53 proto-1.0.0/proto/inst/doc/protoref.pdf |binary proto-1.0.0/proto/man/proto-package.Rd | 88 - proto-1.0.0/proto/man/proto.Rd | 542 ++++---- proto-1.0.0/proto/tests |only proto-1.0.0/proto/vignettes/proto-concordance.tex |only proto-1.0.0/proto/vignettes/proto-dot.pdf |binary proto-1.0.0/proto/vignettes/proto-smoothing03.pdf |binary proto-1.0.0/proto/vignettes/proto-smoothing04.pdf |binary proto-1.0.0/proto/vignettes/proto-smoothing06.pdf |binary proto-1.0.0/proto/vignettes/proto-smoothing10.pdf |binary proto-1.0.0/proto/vignettes/proto.Rnw | 1380 +++++++++++++++++++++- proto-1.0.0/proto/vignettes/proto.tex | 1380 +++++++++++++++++++++- proto-1.0.0/proto/vignettes/protoref.Rnw | 53 40 files changed, 5094 insertions(+), 836 deletions(-)
Title: Statistical Comparison of Two Networks Based on Three Invariance
Measures
Description: This permutation based hypothesis test, suited for Gaussian and
binary data, assesses the difference between two networks based on several
invariance measures (network structure invariance, global strength invariance,
edge invariance). Network structures are estimated with l1-regularized partial
correlations (Gaussian data) or with l1-regularized logistic regression (eLasso,
binary data). Suited for comparison of independent and dependent samples
(currently, only for one group measured twice).
Author: Claudia D. van Borkulo, with contributions from Sacha Epskamp and Alex Millner
Maintainer: Claudia van Borkulo <cvborkulo@gmail.com>
Diff between NetworkComparisonTest versions 2.0.0 dated 2016-09-06 and 2.0.1 dated 2016-10-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/NCT.R | 5 ++++- man/networkcomparisontest-package.Rd | 4 ++-- man/networkcomparisontest.rd | 8 ++++---- 5 files changed, 18 insertions(+), 15 deletions(-)
More information about NetworkComparisonTest at CRAN
Permanent link
Title: Tools for Units of Measurement
Description: Collection of tools to make working with physical measurements
easier. Convert between metric and imperial units, or calculate a dimension's
unknown value from other dimensions' measurements.
Author: Matthew A. Birk
Maintainer: Matthew A. Birk <matthewabirk@gmail.com>
Diff between measurements versions 1.0.0 dated 2016-07-26 and 1.1.0 dated 2016-10-28
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NAMESPACE | 1 + NEWS | 4 ++++ R/conv_multiunit.R |only man/conv_multiunit.Rd |only 6 files changed, 14 insertions(+), 7 deletions(-)
Title: Simulation-Based Bayesian Inference for Latent Traits of Item
Response Models
Description: Functions for simulating realizations from the posterior distribution of
a latent trait of an item response model. Distributions are conditional on one or
a subset of response patterns (e.g., sum scores). Functions for computing likelihoods,
Fisher and observed information, posterior modes, and profile likelihood confidence
intervals are also included. These functions are designed to be easily amenable to
user-specified models.
Author: Timothy R. Johnson
Maintainer: Timothy R. Johnson <trjohns@uidaho.edu>
Diff between ltbayes versions 0.3 dated 2014-07-28 and 0.4 dated 2016-10-28
DESCRIPTION | 12 MD5 | 22 - NAMESPACE | 15 build/vignette.rds |binary inst/doc/custom-models.R | 6 inst/doc/custom-models.Rmd | 4 inst/doc/custom-models.html | 78 ++- inst/doc/example-plots.R | 4 inst/doc/example-plots.Rmd | 884 ++++++++++++++++++++++---------------------- inst/doc/example-plots.html | 83 ++-- vignettes/custom-models.Rmd | 4 vignettes/example-plots.Rmd | 884 ++++++++++++++++++++++---------------------- 12 files changed, 1013 insertions(+), 983 deletions(-)
Title: Item Response Models for Multiple Ratings
Description:
Implements some item response models for multiple
ratings, including the hierarchical rater model,
conditional maximum likelihood estimation of linear
logistic partial credit model and a wrapper function
to the commercial FACETS program.
Author:
Alexander Robitzsch [aut, cre], Jan Steinfeld [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between immer versions 0.5-0 dated 2016-05-31 and 0.6-0 dated 2016-10-28
DESCRIPTION | 11 - MD5 | 122 ++++++++-------- R/IRT.likelihood.immer_HRM.R | 20 +- R/MHprop_hrm.R | 25 +-- R/MHprop_refresh.R | 68 ++++----- R/agree_aicken.R | 14 - R/anova_immer.R | 35 ++-- R/immer_HRM.R | 148 +++++++++---------- R/immer_agree2.R | 75 ++++------ R/immer_cml.R | 88 +++++------ R/immer_collect_traces.R | 92 ++++++------ R/immer_ic_calc.R | 10 - R/immer_ic_hrm.R | 17 +- R/immer_identifiers_relabel.R | 54 +++---- R/immer_mcmc_draw_variance.R | 4 R/immer_opcat.R | 28 +-- R/immer_reshape_wideformat.R | 50 +++--- R/immer_unique_patterns.R | 33 ++-- R/inits_item_parameters.R | 26 +-- R/inits_raterpars_hrm.R | 12 - R/inits_theta_1dim.R | 18 +- R/lc2_agreement.R | 208 +++++++++++++-------------- R/logLik.lc2_agreement.R | 8 - R/logLik_immer.R | 16 +- R/loglik_HRM.R | 52 +++--- R/lpcm_data_prep.R | 94 ++++++------ R/lpcm_generate_design.R | 125 ++++++++-------- R/lpcm_inits.R | 26 +-- R/plot.immer_HRM.R | 4 R/prior_hrm.R | 45 ++---- R/probs2logits.R | 30 ++-- R/probs_gpcm.R | 43 ++--- R/probs_hrm.R | 35 ++-- R/rtrnorm.R | 2 R/sampling_hrm_a.R | 34 ++-- R/sampling_hrm_b.R | 28 +-- R/sampling_hrm_mu_theta_1dim.R | 8 - R/sampling_hrm_phi.R | 104 +++++++------ R/sampling_hrm_psi.R | 32 ++-- R/sampling_hrm_theta_1dim.R | 21 +- R/sampling_hrm_xi.R | 58 +++---- R/simulate_hrm.R | 56 +++---- R/zzz.R | 8 - data/data.immer01a.rda |binary data/data.immer01b.rda |binary data/data.immer02.rda |binary data/data.immer03.rda |binary data/data.immer04a.rda |binary data/data.immer04b.rda |binary data/data.immer05.rda |binary data/data.immer06.rda |binary data/data.immer07.rda |binary data/data.immer08.rda |binary data/data.immer09.rda |binary data/data.immer10.rda |binary inst/NEWS | 17 ++ man/data.immer.Rd | 19 ++ man/immer-package.Rd | 2 man/immer_agree2.Rd | 14 + man/lc2_agreement.Rd | 2 src/HRM_aux_rcpp_functions.cpp | 306 ++++++++++++++++------------------------- src/subimmer.h | 244 ++++++++++++++------------------ 62 files changed, 1266 insertions(+), 1325 deletions(-)
Title: R Interface for International Monetary Fund(IMF) Data API
Description: Search, extract and formulate IMF's datasets.
Author: Ming-Jer Lee [aut, cre]
Maintainer: Ming-Jer Lee <mingjerli@gmail.com>
Diff between IMFData versions 0.1.0 dated 2016-08-16 and 0.2.0 dated 2016-10-28
DESCRIPTION | 10 - MD5 | 8 R/IMFData.R | 34 +++ README.md | 442 +++++++++++++++++++++++++++++++++++++++++++++-- man/CompactDataMethod.Rd | 14 + 5 files changed, 479 insertions(+), 29 deletions(-)
Title: Models for Health Economic Evaluation
Description: Health Economic Evaluation Modelling.
Markov models (decision trees, homogeneous and non-homogeneous)
for health economic evaluation. Model comparison,
sensitivity and probabilistic analysis.
Author: Antoine Filipovic-Pierucci [aut, cre],
Kevin Zarca [aut],
Matthew Wiener [ctb],
Zdenek Kabat [ctb],
Vojtech Filipec [ctb]
Maintainer: Antoine Filipovic-Pierucci <pierucci@gmail.com>
Diff between heemod versions 0.5.0 dated 2016-10-17 and 0.5.1 dated 2016-10-28
DESCRIPTION | 8 +- MD5 | 22 +++--- NEWS.md | 6 + inst/doc/a-introduction.html | 4 - inst/doc/b-time-dependency.html | 4 - inst/doc/c-homogeneous.html | 4 - inst/doc/d-non-homogeneous.html | 4 - inst/doc/e-probabilistic.html | 10 +- inst/doc/f-sensitivity.html | 4 - inst/doc/g-heterogeneity.html | 140 ++++++++++++++++++++-------------------- inst/doc/h-tabular.html | 6 - inst/doc/i-reproduction.html | 4 - 12 files changed, 111 insertions(+), 105 deletions(-)
Title: Drat R Archive Template
Description: Creation and use of R Repositories via helper functions
to insert packages into a repository, and to add repository information
to the current R session. Two primary types of repositories are support:
gh-pages at GitHub, as well as local repositories on either the same machine
or a local network. Drat is a recursive acronym: Drat R Archive Template.
Author: Dirk Eddelbuettel with contributions by Carl Boettiger, Sebastian
Gibb, Colin Gillespie, Jan Górecki, Matt Jones, Thomas Leeper, Steven Pav
and Jan Schulz.
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between drat versions 0.1.1 dated 2016-08-07 and 0.1.2 dated 2016-10-28
ChangeLog | 27 ++++++++++++++++++++++++ DESCRIPTION | 10 ++++----- MD5 | 22 ++++++++++---------- R/pruneRepo.R | 26 ++++++++++++++---------- README.md | 39 +++++++++++++++++++++--------------- inst/NEWS.Rd | 11 ++++++++++ inst/doc/DratFAQ.Rmd | 25 +++++++++++++++++++---- inst/doc/DratFAQ.html | 15 +++++++++---- inst/doc/DratForPackageAuthors.Rmd | 2 - inst/doc/DratForPackageAuthors.html | 2 - vignettes/DratFAQ.Rmd | 25 +++++++++++++++++++---- vignettes/DratForPackageAuthors.Rmd | 2 - 12 files changed, 148 insertions(+), 58 deletions(-)
Title: ACE and AVAS for Selecting Multiple Regression Transformations
Description: Two nonparametric methods for multiple regression transform selection are provided.
The first, Alternative Conditional Expectations (ACE),
is an algorithm to find the fixed point of maximal
correlation, i.e. it finds a set of transformed response variables that maximizes R^2
using smoothing functions [see Breiman, L., and J.H. Friedman. 1985. "Estimating Optimal Transformations
for Multiple Regression and Correlation". Journal of the American Statistical Association.
80:580-598. <doi:10.1080/01621459.1985.10478157>].
Also included is the Additivity Variance Stabilization (AVAS) method which works better than ACE when
correlation is low [see Tibshirani, R.. 1986. "Estimating Transformations for Regression via Additivity
and Variance Stabilization". Journal of the American Statistical Association. 83:394-405.
<doi:10.1080/01621459.1988.10478610>]. A good introduction to these two methods is in chapter 16 of
Frank Harrel's "Regression Modeling Strategies" in the Springer Series in Statistics.
Author: Phil Spector, Jerome Friedman, Robert Tibshirani, Thomas Lumley, Shawn Garbett, Jonathan Baron
Maintainer: Shawn Garbett <shawn.garbett@vanderbilt.edu>
Diff between acepack versions 1.4.0 dated 2016-10-20 and 1.4.1 dated 2016-10-28
DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- NEWS | 4 ++++ src/ace.f | 24 +++++++++++++++++------- src/avas.f | 52 +++++++++++++++++++++++++++++++++++++++++----------- src/rlsmo.f | 6 ++++++ 6 files changed, 78 insertions(+), 27 deletions(-)
Title: Shape Selection for Landsat Time Series of Forest Dynamics
Description: Landsat satellites collect important data about global forest conditions. Documentation about Landsat's role in forest disturbance estimation is available at the site <http://landsat.gsfc.nasa.gov/?p=9513>. By constrained quadratic B-splines, this package delivers an optimal shape-restricted trajectory to a time series of Landsat imagery for the purpose of modeling annual forest disturbance dynamics to behave in an ecologically sensible manner assuming one of seven possible "shapes", namely, flat, decreasing, one-jump (decreasing, jump up, decreasing), inverted vee (increasing then decreasing), vee (decreasing then increasing), linear increasing, and double-jump (decreasing, jump up, decreasing, jump up, decreasing). The main routine selects the best shape according to the minimum Bayes information criterion (BIC) or the cone information criterion (CIC), which is defined as the log of the estimated predictive squared error. The package also provides parameters summarizing the temporal pattern including year(s) of inflection, magnitude of change, pre- and post-inflection rates of growth or recovery. In addition, it contains routines for converting a flat map of disturbance agents to time-series disturbance maps and a graphical routine displaying the fitted trajectory of Landsat imagery.
Author: Mary C. Meyer, Xiyue Liao, Elizabeth Freeman, Gretchen G. Moisen
Maintainer: Xiyue Liao <xiyue@rams.colostate.edu>
Diff between ShapeSelectForest versions 1.2 dated 2015-12-25 and 1.3 dated 2016-10-28
ChangeLog |only DESCRIPTION | 12 +++++--- MD5 | 10 ++++--- R/shape.R | 80 +++++++++++++++++++++++++++++++++++++++++++++++++-------- inst/CITATION |only man/getedf0.Rd | 4 +- man/shape.Rd | 5 ++- 7 files changed, 88 insertions(+), 23 deletions(-)
More information about ShapeSelectForest at CRAN
Permanent link
Title: Compare Detrital Zircon Suites
Description: Compare detrital zircon suites by uploading univariate,
U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a 'shiny'-based
user-interface. Outputs publication quality figures using 'ggplot2', and
tables of statistics currently in use in the detrital zircon geochronology
community.
Author: Magnus Kristoffersen [aut, cre]
Maintainer: Magnus Kristoffersen <magnus.kristoffersen@geo.uio.no>
Diff between detzrcr versions 0.1.1 dated 2016-08-23 and 0.1.2 dated 2016-10-28
DESCRIPTION | 10 MD5 | 36 ++- NAMESPACE | 7 NEWS.md | 10 R/calculations.R | 228 ++++++++++++++++------ R/plotting.R | 104 ++++++++-- README.md | 2 inst/CITATION |only inst/shiny-apps/detzrcr_app/app.R | 392 +++++++++++++++++++++++++++++--------- man/calc_o_param.Rd | 2 man/check_conc.Rd | 6 man/combine_matrices.Rd |only man/make_tiling.Rd |only man/o_param_matrix_age.Rd | 2 man/o_param_matrix_tdm.Rd | 2 man/plot_axis_lim.Rd | 4 man/plot_dens.Rd | 4 man/plot_dens_hist.Rd | 4 man/plot_point_scale.Rd |only man/plot_text_options.Rd |only man/plot_tile.Rd |only man/tile_func.Rd |only man/tiling.Rd |only 23 files changed, 625 insertions(+), 188 deletions(-)
Title: Beyond the Border
Description: Kernel density estimation dedicated to urban geography.
Author: Psar Analyse Urbaine Insee - Thierry Cornely, Laure Genebes, Arlindo Dos
Santos, Cynthia Faivre, Auriane Renaud and Francois Semecurbe
Maintainer: Arlindo Dos Santos <Arlindo.Dos-Santos@insee.fr>
Diff between btb versions 0.1.2 dated 2016-10-26 and 0.1.3 dated 2016-10-28
DESCRIPTION | 8 +- MD5 | 6 - src/rcppLissage.cpp | 20 +++-- src/rcppLissageMedian.cpp | 154 +++------------------------------------------- 4 files changed, 32 insertions(+), 156 deletions(-)
Title: Weighted Subspace Random Forest for Classification
Description: A parallel implementation of Weighted Subspace Random
Forest. The Weighted Subspace Random Forest algorithm was
proposed in the International Journal of Data Warehousing and
Mining by Baoxun Xu, Joshua Zhexue Huang, Graham Williams, Qiang
Wang, and Yunming Ye (2012) <DOI:10.4018/jdwm.2012040103>. The
algorithm can classify very high-dimensional data with random
forests built using small subspaces. A novel variable weighting
method is used for variable subspace selection in place of the
traditional random variable sampling.This new approach is
particularly useful in building models from high-dimensional data.
Author: Qinghan Meng [aut],
He Zhao [aut, cre],
Graham Williams [aut],
Junchao Lv [ctb],
Baoxun Xu [aut]
Maintainer: He Zhao <Simon.Yansen.Zhao@gmail.com>
Diff between wsrf versions 1.6.25 dated 2016-09-10 and 1.7.0 dated 2016-10-28
DESCRIPTION | 8 +- MD5 | 48 ++++++------ R/predict.wsrf.R | 94 +++++++++++++++--------- R/print.wsrf.R | 6 - R/wsrf.default.R | 24 +++--- README.md | 14 +-- inst/NEWS.Rd | 35 ++++++++- inst/doc/wsrf-guide.R | 6 - inst/doc/wsrf-guide.Rmd | 10 +- inst/doc/wsrf-guide.html | 34 ++++---- man/combine.wsrf.Rd | 4 - man/predict.wsrf.Rd | 20 +++-- man/subset.wsrf.Rd | 4 - man/wsrf.Rd | 13 ++- src/dataset.cpp | 6 + src/meta_data.cpp | 2 src/rforest.cpp | 180 +++++++++++++++++++++++++++++++++-------------- src/rforest.h | 56 -------------- src/utility.h | 19 ++++ src/wsrf.cpp | 20 +---- src/wsrf.h | 2 tests/wsrftest.R | 8 +- tests/wsrftest.Rout.save | 8 +- vignettes/wsrf-guide.Rmd | 10 +- vignettes/wsrf-guide.bib | 2 25 files changed, 367 insertions(+), 266 deletions(-)
Title: Class-Focused Pattern Metric Comparisons using Simulation
Description: Provides tools for estimating composition and configuration parameters from a categorical (binary) landscape map (grid) and then simulates a selected number of statistically similar landscapes. Class-focused pattern metrics are computed for each simulated map to produce empirical distributions against which statistical comparisons can be made. The code permits the analysis of single maps or pairs of maps.
Author: Tarmo K. Remmel, (Marie-Josee Fortin, Ferenc Csillag, Sandor Kabos)
Maintainer: Tarmo K. Remmel <remmelt@yorku.ca>
Diff between PatternClass versions 1.5 dated 2013-07-23 and 1.7.1 dated 2016-10-28
PatternClass-1.5/PatternClass/data/ClassPatternData.rda |only PatternClass-1.5/PatternClass/man/ClassPatternData.Rd |only PatternClass-1.7.1/PatternClass/DESCRIPTION | 12 +- PatternClass-1.7.1/PatternClass/MD5 | 52 ++++++------ PatternClass-1.7.1/PatternClass/NAMESPACE | 7 + PatternClass-1.7.1/PatternClass/R/build.lut.R | 16 +-- PatternClass-1.7.1/PatternClass/R/buildsurfs.R | 2 PatternClass-1.7.1/PatternClass/R/doubleplotter.R | 2 PatternClass-1.7.1/PatternClass/R/findcol.R | 21 ++-- PatternClass-1.7.1/PatternClass/R/findrow.R | 20 ++-- PatternClass-1.7.1/PatternClass/R/imaks.R | 18 ++-- PatternClass-1.7.1/PatternClass/R/singlemap.R | 32 +++---- PatternClass-1.7.1/PatternClass/R/singleplotter.R | 49 ++++++----- PatternClass-1.7.1/PatternClass/R/surfplot.R | 21 ++-- PatternClass-1.7.1/PatternClass/R/wi.R | 26 +----- PatternClass-1.7.1/PatternClass/R/wtest.run.R | 30 +++--- PatternClass-1.7.1/PatternClass/data/WhittleData.rda |only PatternClass-1.7.1/PatternClass/data/data.rda |only PatternClass-1.7.1/PatternClass/man/PatternClass-package.Rd | 8 - PatternClass-1.7.1/PatternClass/man/WhittleData.Rd |only PatternClass-1.7.1/PatternClass/man/build.lut.Rd | 12 +- PatternClass-1.7.1/PatternClass/man/buildsurfs.Rd | 4 PatternClass-1.7.1/PatternClass/man/data.Rd |only PatternClass-1.7.1/PatternClass/man/doubleplotter.Rd | 14 +-- PatternClass-1.7.1/PatternClass/man/findcol.Rd |only PatternClass-1.7.1/PatternClass/man/findrow.Rd |only PatternClass-1.7.1/PatternClass/man/imaks.Rd | 4 PatternClass-1.7.1/PatternClass/man/singlemap.Rd | 14 ++- PatternClass-1.7.1/PatternClass/man/singleplotter.Rd | 12 +- PatternClass-1.7.1/PatternClass/man/surfplot.Rd | 6 - PatternClass-1.7.1/PatternClass/man/wi.Rd |only PatternClass-1.7.1/PatternClass/man/wtest.run.Rd |only 32 files changed, 203 insertions(+), 179 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH pubkey parsers.
Supports RSA, DSA and EC curves P-256, P-384 and P-521. Cryptographic signatures
can either be created and verified manually or via x509 certificates. AES can be
used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public
key) encryption or EC for Diffie Hellman. High-level envelope functions combine
RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure
random number generator, and 'bignum' math methods for manually performing
crypto calculations on large multibyte integers.
Author: Jeroen Ooms [cre, aut],
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between openssl versions 0.9.4 dated 2016-05-25 and 0.9.5 dated 2016-10-28
openssl-0.9.4/openssl/inst/testkey.pem |only openssl-0.9.4/openssl/src/read.c |only openssl-0.9.5/openssl/DESCRIPTION | 12 openssl-0.9.5/openssl/MD5 | 138 +++++----- openssl-0.9.5/openssl/NAMESPACE | 38 ++ openssl-0.9.5/openssl/NEWS | 12 openssl-0.9.5/openssl/R/aes.R | 2 openssl-0.9.5/openssl/R/base.R |only openssl-0.9.5/openssl/R/cert.R | 4 openssl-0.9.5/openssl/R/envelope.R | 2 openssl-0.9.5/openssl/R/hash.R | 18 - openssl-0.9.5/openssl/R/mykey.R | 2 openssl-0.9.5/openssl/R/pkcs12.R |only openssl-0.9.5/openssl/R/rand.R | 20 - openssl-0.9.5/openssl/R/read.R | 58 ++-- openssl-0.9.5/openssl/R/rsa.R | 2 openssl-0.9.5/openssl/R/signing.R | 2 openssl-0.9.5/openssl/R/write.R | 2 openssl-0.9.5/openssl/R/writessh.R | 2 openssl-0.9.5/openssl/build/vignette.rds |binary openssl-0.9.5/openssl/configure | 2 openssl-0.9.5/openssl/inst/doc/bignum.R | 13 openssl-0.9.5/openssl/inst/doc/bignum.Rmd | 17 - openssl-0.9.5/openssl/inst/doc/bignum.html | 49 +-- openssl-0.9.5/openssl/inst/doc/crypto_hashing.Rmd | 2 openssl-0.9.5/openssl/inst/doc/crypto_hashing.html | 23 - openssl-0.9.5/openssl/inst/doc/keys.R | 34 -- openssl-0.9.5/openssl/inst/doc/keys.Rmd | 46 --- openssl-0.9.5/openssl/inst/doc/keys.html | 71 ++--- openssl-0.9.5/openssl/inst/doc/secure_rng.Rmd | 2 openssl-0.9.5/openssl/inst/doc/secure_rng.html | 24 - openssl-0.9.5/openssl/man/aes_cbc.Rd | 8 openssl-0.9.5/openssl/man/base64_encode.Rd | 2 openssl-0.9.5/openssl/man/certificates.Rd | 2 openssl-0.9.5/openssl/man/encrypt_envelope.Rd | 4 openssl-0.9.5/openssl/man/hash.Rd | 17 - openssl-0.9.5/openssl/man/keygen.Rd | 4 openssl-0.9.5/openssl/man/openssl.Rd | 1 openssl-0.9.5/openssl/man/pkcs12.Rd |only openssl-0.9.5/openssl/man/rand_bytes.Rd | 11 openssl-0.9.5/openssl/man/read_key.Rd | 16 - openssl-0.9.5/openssl/man/rsa_encrypt.Rd | 6 openssl-0.9.5/openssl/man/signatures.Rd | 2 openssl-0.9.5/openssl/man/write_pem.Rd | 6 openssl-0.9.5/openssl/src/Makevars.win | 6 openssl-0.9.5/openssl/src/aes.c | 12 openssl-0.9.5/openssl/src/base64.c | 4 openssl-0.9.5/openssl/src/cert.c | 14 - openssl-0.9.5/openssl/src/compatibility.c |only openssl-0.9.5/openssl/src/compatibility.h |only openssl-0.9.5/openssl/src/error.c | 1 openssl-0.9.5/openssl/src/keys.c |only openssl-0.9.5/openssl/src/openssh.c | 75 ++--- openssl-0.9.5/openssl/src/password.c |only openssl-0.9.5/openssl/src/pem.c |only openssl-0.9.5/openssl/src/pkcs12.c |only openssl-0.9.5/openssl/src/rand.c | 14 - openssl-0.9.5/openssl/src/ssl.c | 7 openssl-0.9.5/openssl/src/stream.c | 13 openssl-0.9.5/openssl/src/utils.h | 1 openssl-0.9.5/openssl/tests/certigo |only openssl-0.9.5/openssl/tests/google.dk |only openssl-0.9.5/openssl/tests/testthat/test_hash_output_length.R | 28 +- openssl-0.9.5/openssl/tests/testthat/test_pkcs12.R |only openssl-0.9.5/openssl/tests/testthat/test_rand_error.R | 6 openssl-0.9.5/openssl/tools/winlibs.R | 4 openssl-0.9.5/openssl/vignettes/bignum.Rmd | 17 - openssl-0.9.5/openssl/vignettes/crypto_hashing.Rmd | 2 openssl-0.9.5/openssl/vignettes/keys.Rmd | 46 --- openssl-0.9.5/openssl/vignettes/secure_rng.Rmd | 2 70 files changed, 493 insertions(+), 435 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 1.8-6 dated 2016-06-15 and 1.9-0 dated 2016-10-28
openair-1.8-6/openair/R/GoogleMapsPlot.R |only openair-1.8-6/openair/inst/staticdocs |only openair-1.8-6/openair/man/GoogleMapsPlot.Rd |only openair-1.9-0/openair/DESCRIPTION | 16 openair-1.9-0/openair/MD5 | 51 +- openair-1.9-0/openair/NAMESPACE | 3 openair-1.9-0/openair/R/RcppExports.R | 2 openair-1.9-0/openair/R/getMeta.R | 5 openair-1.9-0/openair/R/importAURN.R | 597 ++++++++++++---------------- openair-1.9-0/openair/R/importKCL.R | 2 openair-1.9-0/openair/R/polarPlot.R | 4 openair-1.9-0/openair/R/scatterPlot.R | 31 - openair-1.9-0/openair/R/summaryPlot.R | 241 +++++------ openair-1.9-0/openair/R/timeAverage.R | 41 - openair-1.9-0/openair/R/timePlot.R | 465 +++++++++++---------- openair-1.9-0/openair/R/timeProp.R | 4 openair-1.9-0/openair/R/timeVariation.R | 4 openair-1.9-0/openair/R/trajLevel.R | 5 openair-1.9-0/openair/R/trendLevel.R | 2 openair-1.9-0/openair/R/utilities.R | 6 openair-1.9-0/openair/R/windRose.R | 37 - openair-1.9-0/openair/README.md | 209 +++------ openair-1.9-0/openair/inst/CITATION | 10 openair-1.9-0/openair/man/importAURN.Rd | 506 +++++++++-------------- openair-1.9-0/openair/man/importMeta.Rd | 5 openair-1.9-0/openair/man/summaryPlot.Rd | 163 ++++--- openair-1.9-0/openair/man/timePlot.Rd | 413 ++++++++++--------- openair-1.9-0/openair/src/RcppExports.cpp | 10 28 files changed, 1334 insertions(+), 1498 deletions(-)
Title: Functions for Reading Ontologies into R
Description: Functions for reading ontologies into R as lists and manipulating sets of ontological terms.
Author: Daniel Greene <dg333@cam.ac.uk>
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between ontologyIndex versions 2.0 dated 2016-08-03 and 2.2 dated 2016-10-28
ontologyIndex-2.0/ontologyIndex/data/mpo_to_hpo.RData |only ontologyIndex-2.0/ontologyIndex/inst/doc/ontologyIndex-guide.R |only ontologyIndex-2.0/ontologyIndex/inst/doc/ontologyIndex-guide.Rmd |only ontologyIndex-2.0/ontologyIndex/inst/doc/ontologyIndex-guide.html |only ontologyIndex-2.0/ontologyIndex/man/exclude_branches.Rd |only ontologyIndex-2.0/ontologyIndex/man/force_compatibility.Rd |only ontologyIndex-2.0/ontologyIndex/man/get_mpo_to_hpo.Rd |only ontologyIndex-2.0/ontologyIndex/man/get_terms_by_set_matrix.Rd |only ontologyIndex-2.0/ontologyIndex/man/intersection_with_branches.Rd |only ontologyIndex-2.0/ontologyIndex/man/mpo_to_hpo.Rd |only ontologyIndex-2.0/ontologyIndex/man/prune_branches.Rd |only ontologyIndex-2.0/ontologyIndex/vignettes/ontologyIndex-guide.Rmd |only ontologyIndex-2.2/ontologyIndex/DESCRIPTION | 14 ontologyIndex-2.2/ontologyIndex/MD5 | 64 + ontologyIndex-2.2/ontologyIndex/NAMESPACE | 25 ontologyIndex-2.2/ontologyIndex/NEWS.md | 11 ontologyIndex-2.2/ontologyIndex/R/data.R | 340 +++++----- ontologyIndex-2.2/ontologyIndex/R/descendants.R |only ontologyIndex-2.2/ontologyIndex/R/generic.R |only ontologyIndex-2.2/ontologyIndex/R/sets.R | 212 ------ ontologyIndex-2.2/ontologyIndex/build/vignette.rds |binary ontologyIndex-2.2/ontologyIndex/data/datalist | 1 ontologyIndex-2.2/ontologyIndex/data/go.RData |binary ontologyIndex-2.2/ontologyIndex/data/hpo.RData |binary ontologyIndex-2.2/ontologyIndex/data/mpo.RData |binary ontologyIndex-2.2/ontologyIndex/inst/doc/intro-to-ontologyX.R |only ontologyIndex-2.2/ontologyIndex/inst/doc/intro-to-ontologyX.Rmd |only ontologyIndex-2.2/ontologyIndex/inst/doc/intro-to-ontologyX.html |only ontologyIndex-2.2/ontologyIndex/inst/doc/reading-ontologies.R |only ontologyIndex-2.2/ontologyIndex/inst/doc/reading-ontologies.Rmd |only ontologyIndex-2.2/ontologyIndex/inst/doc/reading-ontologies.html |only ontologyIndex-2.2/ontologyIndex/man/check.Rd |only ontologyIndex-2.2/ontologyIndex/man/exclude_descendants.Rd |only ontologyIndex-2.2/ontologyIndex/man/get_OBO.Rd |only ontologyIndex-2.2/ontologyIndex/man/get_OWL.Rd |only ontologyIndex-2.2/ontologyIndex/man/get_ancestors.Rd | 4 ontologyIndex-2.2/ontologyIndex/man/get_descendants.Rd | 14 ontologyIndex-2.2/ontologyIndex/man/get_ontology.Rd | 11 ontologyIndex-2.2/ontologyIndex/man/get_term_descendancy_matrix.Rd | 4 ontologyIndex-2.2/ontologyIndex/man/get_term_property.Rd | 18 ontologyIndex-2.2/ontologyIndex/man/intersection_with_descendants.Rd |only ontologyIndex-2.2/ontologyIndex/man/minimal_set.Rd | 4 ontologyIndex-2.2/ontologyIndex/man/ontology_index.Rd |only ontologyIndex-2.2/ontologyIndex/man/owl_list_attributes.Rd |only ontologyIndex-2.2/ontologyIndex/man/owl_properties.Rd |only ontologyIndex-2.2/ontologyIndex/man/print.ontology_index.Rd |only ontologyIndex-2.2/ontologyIndex/man/prune_descendants.Rd |only ontologyIndex-2.2/ontologyIndex/vignettes/intro-to-ontologyX.Rmd |only ontologyIndex-2.2/ontologyIndex/vignettes/reading-ontologies.Rmd |only 49 files changed, 303 insertions(+), 419 deletions(-)
Title: Flexible Modelling Functions for Epidemiological Data Analysis
Description: Provides flexible model fitting used in epidemiological data
analysis by a unified model specification, along with some data manipulation
functions. This package covers fitting of variety models including Cox
regression models, linear regression models, Poisson regression models, logistic
models and others whose likelihood is expressed in negative binomial, gamma and
Weibull distributions.
Author: Kazutaka Doi [aut,cre],
Kei Sakabe [ctb],
Masataka Taruri [ctb]
Maintainer: Kazutaka Doi <kztkdi@gmail.com>
Diff between epifit versions 0.1.0 dated 2016-05-05 and 0.1.1 dated 2016-10-28
epifit-0.1.0/epifit/src/mumul.h |only epifit-0.1.0/epifit/src/select.h |only epifit-0.1.1/epifit/DESCRIPTION | 8 epifit-0.1.1/epifit/MD5 | 87 - epifit-0.1.1/epifit/NAMESPACE | 75 epifit-0.1.1/epifit/NEWS | 130 - epifit-0.1.1/epifit/R/AIC.epifit.R | 44 epifit-0.1.1/epifit/R/calcAge.R | 64 epifit-0.1.1/epifit/R/convertFromFactor.R | 162 + epifit-0.1.1/epifit/R/convertNA.R | 109 - epifit-0.1.1/epifit/R/countNA.R | 60 epifit-0.1.1/epifit/R/epifit-package.R | 66 epifit-0.1.1/epifit/R/epifit.R | 1471 +++++++++--------- epifit-0.1.1/epifit/R/extractVariable.R | 68 epifit-0.1.1/epifit/R/getIndex.R | 110 - epifit-0.1.1/epifit/R/listNumericIncompatibility.R | 104 - epifit-0.1.1/epifit/R/modes.R | 28 epifit-0.1.1/epifit/R/modules.R | 96 + epifit-0.1.1/epifit/R/print.epifit.R | 78 epifit-0.1.1/epifit/R/pullOneValue.R | 182 +- epifit-0.1.1/epifit/R/pytable.R | 138 - epifit-0.1.1/epifit/R/removeVariable.R | 66 epifit-0.1.1/epifit/R/selectByIndex.R | 56 epifit-0.1.1/epifit/R/selectVariable.R | 8 epifit-0.1.1/epifit/R/showContents.R | 250 +-- epifit-0.1.1/epifit/man/AIC.epifit.Rd | 72 epifit-0.1.1/epifit/man/calcAge.Rd | 50 epifit-0.1.1/epifit/man/convertFromFactor.Rd | 10 epifit-0.1.1/epifit/man/convertNA.Rd | 18 epifit-0.1.1/epifit/man/countNA.Rd | 54 epifit-0.1.1/epifit/man/epifit-package.Rd | 72 epifit-0.1.1/epifit/man/epifit.Rd | 2 epifit-0.1.1/epifit/man/extractVariable.Rd | 52 epifit-0.1.1/epifit/man/getIndex.Rd | 68 epifit-0.1.1/epifit/man/listNumericIncompatibility.Rd | 64 epifit-0.1.1/epifit/man/modes.Rd | 42 epifit-0.1.1/epifit/man/print.epifit.Rd | 38 epifit-0.1.1/epifit/man/pullOneValue.Rd | 60 epifit-0.1.1/epifit/man/pytable.Rd | 62 epifit-0.1.1/epifit/man/selectByIndex.Rd | 68 epifit-0.1.1/epifit/man/selectVariable.Rd | 54 epifit-0.1.1/epifit/man/showContents.Rd | 80 epifit-0.1.1/epifit/src/Makevars | 2 epifit-0.1.1/epifit/src/mumul.cpp | 49 epifit-0.1.1/epifit/src/scanvarname.cpp |only epifit-0.1.1/epifit/src/select.cpp | 63 46 files changed, 2305 insertions(+), 2135 deletions(-)
Title: Foreach Parallel Adaptor using the Future API of the 'future'
Package
Description: Provides a '%dopar%' adaptor such that any type of futures can
be used as backends for the 'foreach' framework.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between doFuture versions 0.2.1 dated 2016-09-08 and 0.3.0 dated 2016-10-28
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NEWS | 11 +++++++++++ R/doFuture.R | 18 +++++++++++++++++- tests/foreach,nested.R | 37 ++++++++++++++++++++++++++++++------- tests/foreach,nested_dopar.R |only 6 files changed, 67 insertions(+), 16 deletions(-)
Title: Command Line Optional and Positional Argument Parser
Description: A command line parser to
be used with Rscript to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L Davis. Ports examples from the argparse Python module by the
Python Software Foundation. Ports examples from the getopt package by Allen
Day.
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between argparse versions 1.0.1 dated 2014-04-05 and 1.0.4 dated 2016-10-28
DESCRIPTION | 11 ++++---- MD5 | 18 ++++++------- NAMESPACE | 2 + NEWS | 21 +++++++++++++++ R/argparse.R | 51 +++++++++++++++++++++++++++++++------- build/vignette.rds |binary inst/doc/argparse.R | 14 ---------- inst/doc/argparse.pdf |binary man/ArgumentParser.Rd | 40 +++++++++++++++--------------- tests/testthat/test-argparse.R | 54 ++++++++++++++++++++++++++++++++++++----- 10 files changed, 147 insertions(+), 64 deletions(-)