Title: Markov-Switching GARCH Models
Description: The MSGARCH package offers methods to fit (by Maximum Likelihood or Bayesian), simulate, and forecast various Markov-Switching GARCH processes.
Author: Keven Bluteau [aut, cre],
David Ardia [aut],
Denis-Alexandre Trottier [aut],
Kris Boudt [ctb],
Brian Peterson [ctb]
Maintainer: Keven Bluteau <Keven.Bluteau@unine.ch>
Diff between MSGARCH versions 0.16 dated 2016-08-25 and 0.17 dated 2016-10-29
MSGARCH-0.16/MSGARCH/R/sim.ahead.R |only MSGARCH-0.16/MSGARCH/src/Gas.cpp |only MSGARCH-0.16/MSGARCH/vignettes |only MSGARCH-0.17/MSGARCH/DESCRIPTION | 17 ++--- MSGARCH-0.17/MSGARCH/MD5 | 91 +++++++++++++-------------- MSGARCH-0.17/MSGARCH/NAMESPACE | 1 MSGARCH-0.17/MSGARCH/NEWS | 26 ++----- MSGARCH-0.17/MSGARCH/R/AIC.R | 5 - MSGARCH-0.17/MSGARCH/R/BIC.R | 5 - MSGARCH-0.17/MSGARCH/R/DIC.R | 11 +-- MSGARCH-0.17/MSGARCH/R/MSGARCH.R | 19 ++--- MSGARCH-0.17/MSGARCH/R/Pstate.R | 5 - MSGARCH-0.17/MSGARCH/R/bayes.R | 12 ++- MSGARCH-0.17/MSGARCH/R/cdf.R | 5 - MSGARCH-0.17/MSGARCH/R/f.theta.mixture.R | 22 +----- MSGARCH-0.17/MSGARCH/R/findParameters.R | 60 +++++------------ MSGARCH-0.17/MSGARCH/R/ht.R | 12 +-- MSGARCH-0.17/MSGARCH/R/kernel.R | 5 - MSGARCH-0.17/MSGARCH/R/mle.R | 23 +++--- MSGARCH-0.17/MSGARCH/R/pdf.R | 5 - MSGARCH-0.17/MSGARCH/R/pit.R | 13 +-- MSGARCH-0.17/MSGARCH/R/pred.R | 7 -- MSGARCH-0.17/MSGARCH/R/print.R | 21 +++--- MSGARCH-0.17/MSGARCH/R/risk.R | 13 ++- MSGARCH-0.17/MSGARCH/R/sim.R | 2 MSGARCH-0.17/MSGARCH/R/simahead.R | 7 -- MSGARCH-0.17/MSGARCH/R/spec.R | 1 MSGARCH-0.17/MSGARCH/R/transmat.R | 21 +++--- MSGARCH-0.17/MSGARCH/R/unc.vol.R | 21 +++++- MSGARCH-0.17/MSGARCH/R/utils.R | 94 ++++++++++++++++------------ MSGARCH-0.17/MSGARCH/inst/doc |only MSGARCH-0.17/MSGARCH/man/AIC.Rd | 5 - MSGARCH-0.17/MSGARCH/man/BIC.Rd | 5 - MSGARCH-0.17/MSGARCH/man/DIC.Rd | 11 +-- MSGARCH-0.17/MSGARCH/man/MSGARCH-package.Rd | 21 +++--- MSGARCH-0.17/MSGARCH/man/Pstate.Rd | 5 - MSGARCH-0.17/MSGARCH/man/cdf.Rd | 5 - MSGARCH-0.17/MSGARCH/man/fit.bayes.Rd | 11 ++- MSGARCH-0.17/MSGARCH/man/fit.mle.Rd | 14 +--- MSGARCH-0.17/MSGARCH/man/ht.Rd | 11 +-- MSGARCH-0.17/MSGARCH/man/kernel.Rd | 5 - MSGARCH-0.17/MSGARCH/man/pdf.Rd | 5 - MSGARCH-0.17/MSGARCH/man/pit.Rd | 9 +- MSGARCH-0.17/MSGARCH/man/pred.Rd | 5 - MSGARCH-0.17/MSGARCH/man/risk.Rd | 9 +- MSGARCH-0.17/MSGARCH/man/sim.Rd | 2 MSGARCH-0.17/MSGARCH/man/simahead.Rd | 7 -- MSGARCH-0.17/MSGARCH/man/transmat.Rd | 5 - MSGARCH-0.17/MSGARCH/src/GAS.cpp |only 49 files changed, 318 insertions(+), 341 deletions(-)
Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our paper
in the Journal of Statistical Software (2016, v71i02). Either version 2 or 3
of the 'Protocol Buffers' 'API' is supported.
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.6 dated 2016-09-09 and 0.4.7 dated 2016-10-29
ChangeLog | 11 +++++++++++ DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- README.md | 10 ++++++---- inst/NEWS.Rd | 7 +++++++ inst/doc/RProtoBuf-intro.pdf |binary inst/doc/RProtoBuf-paper.pdf |binary inst/doc/RProtoBuf-quickref.pdf |binary inst/doc/RProtoBuf-unitTests.pdf |binary src/lookup.cpp | 2 +- vignettes/RProtoBuf-paper.bib | 2 +- vignettes/figures/fig-SER.pdf |binary 12 files changed, 43 insertions(+), 23 deletions(-)
Title: Finding Files in Project Subdirectories
Description: Robust, reliable and flexible paths to files below a
project root. The 'root' of a project is defined as a directory
that matches a certain criterion, e.g., it contains a certain
regular file.
Author: Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between rprojroot versions 1.0-2 dated 2016-03-28 and 1.1 dated 2016-10-29
DESCRIPTION | 15 +- MD5 | 42 +++-- NAMESPACE | 8 + NEWS.md | 27 +++ R/criterion.R | 56 +++++++ R/file.R | 15 -- R/has-file.R | 57 +++++++ R/root.R | 16 +- R/rprojroot-package.R |only R/shortcut.R | 8 + build/vignette.rds |binary inst/doc/rprojroot.R | 49 ++++-- inst/doc/rprojroot.Rmd | 158 ++++++++++++++++----- inst/doc/rprojroot.html | 300 +++++++++++++++++++++++++--------------- man/criteria.Rd | 18 ++ man/find_root_file.Rd | 21 +- man/root_criterion.Rd | 42 +++++ man/rprojroot-package.Rd |only tests/testthat/package |only tests/testthat/test-criterion.R | 13 + tests/testthat/test-root.R | 34 ++++ tests/testthat/test-testthat.R |only vignettes/rprojroot.Rmd | 46 +++++- 23 files changed, 705 insertions(+), 220 deletions(-)
Title: Build Panel Data Sets from PSID Raw Data
Description: Makes it easy to build panel data in wide format from Panel Survey
of Income Dynamics (PSID) delivered raw data. Deals with data downloaded and
pre-processed by 'Stata' or 'SAS', or can optionally download directly from
the PSID server using the 'SAScii' package. 'psidR' takes care of merging
data from each wave onto a cross-period index file, so that individuals can be
followed over time. The user must specify which years they are interested in,
and the PSID variable names (e.g. ER21003) for each year (they differ in each
year). There are different panel data designs and sample subsetting criteria
implemented ("SRC", "SEO", "immigrant" and "latino" samples).
Author: Florian Oswald
Maintainer: Florian Oswald <florian.oswald@gmail.com>
Diff between psidR versions 1.3 dated 2015-05-15 and 1.4 dated 2016-10-29
psidR-1.3/psidR/inst/example-calls.r |only psidR-1.3/psidR/tests/testthat/test_psidR.R |only psidR-1.4/psidR/DESCRIPTION | 27 +- psidR-1.4/psidR/MD5 | 32 +- psidR-1.4/psidR/NAMESPACE | 5 psidR-1.4/psidR/NEWS | 14 - psidR-1.4/psidR/R/build.panel.r | 301 +++++++++++++++-------- psidR-1.4/psidR/R/makeids.r | 34 +- psidR-1.4/psidR/inst/examples |only psidR-1.4/psidR/inst/psid-lists |only psidR-1.4/psidR/man/build.panel.Rd | 99 +++---- psidR-1.4/psidR/man/build.psid.Rd |only psidR-1.4/psidR/man/get.psid.Rd | 2 psidR-1.4/psidR/man/make.char.Rd | 2 psidR-1.4/psidR/man/makeids.Rd | 2 psidR-1.4/psidR/man/psidR.Rd | 4 psidR-1.4/psidR/man/testPSID.Rd | 2 psidR-1.4/psidR/tests/testthat/test_buildpanel.R |only psidR-1.4/psidR/tests/testthat/test_testPSID.R |only 19 files changed, 324 insertions(+), 200 deletions(-)
Title: Quantitative Fatty Acid Signature Analysis
Description: Accurate estimates of the diets of predators are required
in many areas of ecology, but for many species current methods are
imprecise, limited to the last meal, and often biased. The diversity
of fatty acids and their patterns in organisms, coupled with the
narrow limitations on their biosynthesis, properties of digestion in
monogastric animals, and the prevalence of large storage reservoirs of
lipid in many predators, led us to propose the use of quantitative
fatty acid signature analysis (QFASA) to study predator diets.
Author: Sara Iverson [aut],
Chris Field [aut],
Don Bowen [aut],
Wade Blanchard [aut],
Connie Stewart [aut, cph],
Shelley Lang [aut],
Justin Kamerman [cre, cph]
Maintainer: Justin Kamerman <justin.kamerman@unb.ca>
Diff between QFASA versions 1.0.1 dated 2016-06-15 and 1.0.2 dated 2016-10-29
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- NEWS.md | 4 ++++ R/qfasa.R | 5 +++++ README.md | 12 ++++++++---- inst/doc/ModelingWorkflow.html | 4 ++-- tests/testthat/testMatrixDimensions.R |only 7 files changed, 31 insertions(+), 17 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 1.6 dated 2016-10-21 and 1.6-1 dated 2016-10-29
DESCRIPTION | 12 +- MD5 | 93 ++++++++++++-------- NEWS | 6 + R/append_data.R | 18 --- R/bb.R | 82 ++++++++--------- R/end_of_the_world.R | 37 +++----- R/geocode_OSM.R | 51 ++++++----- R/get_proj4_code.R | 91 ++++++++++++------- R/gridplot.R | 4 R/lines_midpoints.R | 2 R/map_coloring.R | 6 - R/plot_all.R | 5 - R/plot_map.R | 6 - R/plot_misc_functions.R | 6 - R/preprocess_shapes.R | 46 +++++---- R/print_tmap.R | 12 +- R/process_meta.R | 2 R/process_shapes.R | 10 +- R/qtm.R | 2 R/read_osm.R | 2 R/set_projection.R | 88 ++++++++++--------- R/tm_shape.R | 2 inst/doc/tmap-modes.Rmd | 6 - inst/doc/tmap-modes.html | 151 +++++++------------------------- inst/doc/tmap-nutshell.Rmd | 6 - inst/doc/tmap-nutshell.html | 194 ++++++++++++------------------------------ man/append_data.Rd | 13 ++ man/bb.Rd | 8 + man/geocode_OSM.Rd | 4 man/get_proj4.Rd | 10 +- man/map_coloring.Rd | 5 - man/qtm.Rd | 2 man/rev_geocode_OSM.Rd | 4 man/set_projection.Rd | 21 +--- man/tm_facets.Rd | 1 man/tm_shape.Rd | 2 vignettes/tmap-modes.Rmd | 6 - vignettes/tmap-modes_files |only vignettes/tmap-nutshell.Rmd | 6 - vignettes/tmap-nutshell_files |only 40 files changed, 445 insertions(+), 577 deletions(-)
Title: Fit Mixtures of Archetype Species
Description: Fitting Mixtures to Species distributions using BFGS and analytical derivatives.
Author: Piers K Dunstan, Scott D Foster and Ross Darnell
Maintainer: Piers Dunstan <Piers.Dunstan@csiro.au>
Diff between SpeciesMix versions 0.3.1 dated 2013-10-02 and 0.3.4 dated 2016-10-29
DESCRIPTION | 11 +- MD5 | 6 - R/SpeciesMix.R | 248 +-------------------------------------------------------- src/Tweedie.h | 11 +- 4 files changed, 21 insertions(+), 255 deletions(-)
Title: Parser Combinator for R
Description: Parser generator for R using combinatory parsers. It
is inspired by combinatory parsers developed in Haskell.
Author: Chapman Siu
Maintainer: Chapman Siu <chpmn.siu@gmail.com>
Diff between Ramble versions 0.1.0 dated 2016-05-21 and 0.1.1 dated 2016-10-29
DESCRIPTION | 10 MD5 | 63 +-- NAMESPACE | 3 R/parser.R | 337 ++++++++++++++---- R/utils.R | 26 - build/vignette.rds |binary inst/doc/Higher-Order_Functions_for_Parsing_in_R.Rmd | 2 inst/doc/Higher-Order_Functions_for_Parsing_in_R.html | 146 ++++--- man/Alpha.Rd | 7 man/AlphaNum.Rd | 7 man/Digit.Rd | 7 man/Lower.Rd | 7 man/SpaceCheck.Rd | 7 man/String.Rd | 11 man/Unlist.Rd | 8 man/Upper.Rd | 7 man/alt.Rd | 13 man/grapes-thentree-grapes.Rd |only man/ident.Rd | 7 man/identifier.Rd | 7 man/many.Rd | 5 man/maybe.Rd |only man/nat.Rd | 7 man/natural.Rd | 7 man/some.Rd | 5 man/space.Rd | 7 man/symbol.Rd | 7 man/then.Rd | 14 man/thentree.Rd |only man/token.Rd | 7 man/using.Rd | 13 tests/testthat/test_functions.R | 98 ++++- tests/testthat/test_functions2.R |only tests/testthat/test_repetition.R |only vignettes/Higher-Order_Functions_for_Parsing_in_R.Rmd | 2 35 files changed, 629 insertions(+), 218 deletions(-)
Title: Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
Description: The qgraph package can be used to visualize data as networks as well as provides an interface for visualizing weighted graphical models.
Author: Sacha Epskamp, Giulio Costantini, Jonas Haslbeck, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between qgraph versions 1.3.5 dated 2016-08-31 and 1.4.0 dated 2016-10-29
DESCRIPTION | 8 - MD5 | 17 +-- NAMESPACE | 2 NEWS | 11 ++ R/PLOT.R | 46 +++++++-- R/drawNode.R | 148 ++++++++++++++++++++++++++++- R/pathways.R |only R/pie2.R |only R/qgraph.R | 283 +++++++++++++++++++++++++++++++++++++++++++++++--------- man/pathways.Rd |only man/qgraph.Rd | 25 ++++ 11 files changed, 475 insertions(+), 65 deletions(-)
Title: Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects
Description: Offers various swiss maps as data frames and 'ggplot2' objects and gives the
possibility to add layers of data on the maps. Data are publicly available
from the swiss federal statistical office.
Author: Sandro Petrillo Burri [aut, cre],
Eric Stephani [aut],
Lisa Bottinelli [ctb]
Maintainer: Sandro Petrillo Burri <gibo.gaf@gmail.com>
Diff between ggswissmaps versions 0.0.9 dated 2016-09-19 and 0.1.1 dated 2016-10-29
ggswissmaps-0.0.9/ggswissmaps/man/theme_white.Rd |only ggswissmaps-0.1.1/ggswissmaps/DESCRIPTION | 12 + ggswissmaps-0.1.1/ggswissmaps/MD5 | 32 ++-- ggswissmaps-0.1.1/ggswissmaps/NEWS | 69 +++++++--- ggswissmaps-0.1.1/ggswissmaps/R/ggswissmaps_00funs.R | 20 -- ggswissmaps-0.1.1/ggswissmaps/R/ggswissmaps_data.R | 62 +++----- ggswissmaps-0.1.1/ggswissmaps/R/zzz.R |only ggswissmaps-0.1.1/ggswissmaps/README.md | 3 ggswissmaps-0.1.1/ggswissmaps/data/shp_df.rda |binary ggswissmaps-0.1.1/ggswissmaps/inst/doc/ggswissmaps_intro.R | 15 -- ggswissmaps-0.1.1/ggswissmaps/inst/doc/ggswissmaps_intro.Rmd | 43 ------ ggswissmaps-0.1.1/ggswissmaps/inst/doc/ggswissmaps_intro.html | 47 +----- ggswissmaps-0.1.1/ggswissmaps/man/ggswissmaps.Rd | 15 +- ggswissmaps-0.1.1/ggswissmaps/man/maps2.Rd | 13 + ggswissmaps-0.1.1/ggswissmaps/man/maps2_.Rd | 6 ggswissmaps-0.1.1/ggswissmaps/man/shp_df.Rd | 9 - ggswissmaps-0.1.1/ggswissmaps/man/theme_white_f.Rd | 8 - ggswissmaps-0.1.1/ggswissmaps/vignettes/ggswissmaps_intro.Rmd | 43 ------ 18 files changed, 163 insertions(+), 234 deletions(-)
Title: Estimation of the Conditional Survival Function for Ordered
Multivariate Failure Time Data
Description: Method to implement some newly developed methods for the
estimation of the conditional survival function.
Author: Luis Meira-Machado and Marta Sestelo
Maintainer: Luis Meira-Machado <lmachado@math.uminho.pt>
Diff between condSURV versions 0.1.0 dated 2016-05-25 and 1.0.0 dated 2016-10-29
condSURV-0.1.0/condSURV/man/survKMW.Rd |only condSURV-0.1.0/condSURV/man/survLDM.Rd |only condSURV-0.1.0/condSURV/man/survPLDM.Rd |only condSURV-1.0.0/condSURV/DESCRIPTION | 12 condSURV-1.0.0/condSURV/MD5 | 41 - condSURV-1.0.0/condSURV/NAMESPACE | 5 condSURV-1.0.0/condSURV/NEWS |only condSURV-1.0.0/condSURV/R/Beran.R | 5 condSURV-1.0.0/condSURV/R/survCOND.R |only condSURV-1.0.0/condSURV/R/survCS.R | 61 +- condSURV-1.0.0/condSURV/R/survIPCW.R | 638 +++++++++++++++++------- condSURV-1.0.0/condSURV/R/survKMW.R | 220 ++++++-- condSURV-1.0.0/condSURV/R/survLDM.R | 58 +- condSURV-1.0.0/condSURV/R/survPLDM.R | 67 +- condSURV-1.0.0/condSURV/R/whichCS.R |only condSURV-1.0.0/condSURV/build/partial.rdb |binary condSURV-1.0.0/condSURV/data/bladderCS.rda |only condSURV-1.0.0/condSURV/man/KM.Rd | 5 condSURV-1.0.0/condSURV/man/KMW.Rd | 14 condSURV-1.0.0/condSURV/man/bladderCS.Rd |only condSURV-1.0.0/condSURV/man/condSURV-package.Rd | 15 condSURV-1.0.0/condSURV/man/gbcsCS.Rd | 2 condSURV-1.0.0/condSURV/man/plot.surv.Rd | 2 condSURV-1.0.0/condSURV/man/survCOND.Rd |only condSURV-1.0.0/condSURV/man/survCS.Rd | 56 +- condSURV-1.0.0/condSURV/man/survIPCW.Rd | 20 26 files changed, 879 insertions(+), 342 deletions(-)