Title: Survival Analysis
Description: Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] (original S->R port and maintainer until 2009)
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>
Diff between survival versions 2.39-5 dated 2016-06-26 and 2.40-1 dated 2016-10-30
survival-2.39-5/survival/noweb/yates.Rnw |only survival-2.40-1/survival/DESCRIPTION | 7 survival-2.40-1/survival/MD5 | 164 +++-- survival-2.40-1/survival/NAMESPACE | 6 survival-2.40-1/survival/R/Surv.S | 4 survival-2.40-1/survival/R/coxph.R | 9 survival-2.40-1/survival/R/is.ratetable.S | 5 survival-2.40-1/survival/R/model.matrix.coxph.R | 5 survival-2.40-1/survival/R/normalizetime.R |only survival-2.40-1/survival/R/plot.survfit.R | 44 + survival-2.40-1/survival/R/predict.coxph.R | 2 survival-2.40-1/survival/R/predict.survreg.S | 2 survival-2.40-1/survival/R/print.summary.survfit.S | 5 survival-2.40-1/survival/R/print.summary.survfitms.S | 6 survival-2.40-1/survival/R/print.survfit.S | 15 survival-2.40-1/survival/R/residuals.coxph.S | 7 survival-2.40-1/survival/R/statefig.R |only survival-2.40-1/survival/R/survSplit.R | 57 + survival-2.40-1/survival/R/survfit.R | 15 survival-2.40-1/survival/R/survfit.coxph.R | 59 +- survival-2.40-1/survival/R/survfit.matrix.R | 12 survival-2.40-1/survival/R/survfitCI.R | 234 ++++---- survival-2.40-1/survival/R/survfitKM.S | 9 survival-2.40-1/survival/R/survfitms.R | 68 +- survival-2.40-1/survival/R/survreg.S | 9 survival-2.40-1/survival/ToDo | 14 survival-2.40-1/survival/build/vignette.rds |binary survival-2.40-1/survival/data/datalist | 2 survival-2.40-1/survival/data/myeloid.rda |only survival-2.40-1/survival/data/rhDNase.rda |only survival-2.40-1/survival/inst/CITATION | 2 survival-2.40-1/survival/inst/NEWS.Rd | 62 ++ survival-2.40-1/survival/inst/doc/adjcurve.R | 22 survival-2.40-1/survival/inst/doc/adjcurve.Rnw | 28 survival-2.40-1/survival/inst/doc/adjcurve.pdf |binary survival-2.40-1/survival/inst/doc/compete.R | 6 survival-2.40-1/survival/inst/doc/compete.Rnw | 20 survival-2.40-1/survival/inst/doc/compete.pdf |binary survival-2.40-1/survival/inst/doc/multi.R |only survival-2.40-1/survival/inst/doc/multi.Rnw |only survival-2.40-1/survival/inst/doc/multi.pdf |only survival-2.40-1/survival/inst/doc/splines.pdf |binary survival-2.40-1/survival/inst/doc/tests.pdf |binary survival-2.40-1/survival/inst/doc/timedep.pdf |binary survival-2.40-1/survival/inst/doc/validate.pdf |binary survival-2.40-1/survival/man/Surv.Rd | 2 survival-2.40-1/survival/man/lines.survfit.Rd | 19 survival-2.40-1/survival/man/myeloid.Rd |only survival-2.40-1/survival/man/nwtco.Rd | 2 survival-2.40-1/survival/man/ratetable.Rd | 2 survival-2.40-1/survival/man/rhDNase.Rd |only survival-2.40-1/survival/man/statefig.Rd |only survival-2.40-1/survival/man/survSplit.Rd | 27 survival-2.40-1/survival/man/survfit.coxph.Rd | 5 survival-2.40-1/survival/man/survfit.formula.Rd | 24 survival-2.40-1/survival/man/survfit.object.Rd | 19 survival-2.40-1/survival/man/survival-internal.Rd | 3 survival-2.40-1/survival/man/tmerge.Rd | 17 survival-2.40-1/survival/noweb/Makefile | 2 survival-2.40-1/survival/noweb/Readme | 6 survival-2.40-1/survival/noweb/coxph.Rnw | 15 survival-2.40-1/survival/noweb/coxsurv.Rnw | 62 +- survival-2.40-1/survival/noweb/msurv.nw | 268 ++++----- survival-2.40-1/survival/noweb/plot.Rnw | 40 + survival-2.40-1/survival/noweb/plot.Rnw.orig |only survival-2.40-1/survival/noweb/statefig.Rnw |only survival-2.40-1/survival/noweb/survfit.Rnw | 39 - survival-2.40-1/survival/noweb/survfitCI.Rnw | 430 +++++++-------- survival-2.40-1/survival/noweb/survfitms.Rnw | 75 +- survival-2.40-1/survival/noweb/zzz |only survival-2.40-1/survival/src/dmatrix.c | 32 - survival-2.40-1/survival/src/init.c | 4 survival-2.40-1/survival/src/survfitci.c | 214 +++---- survival-2.40-1/survival/src/survproto.h | 7 survival-2.40-1/survival/tests/coxsurv.R | 9 survival-2.40-1/survival/tests/coxsurv.Rout.save | 18 survival-2.40-1/survival/tests/finegray.R | 4 survival-2.40-1/survival/tests/finegray.Rout.save | 12 survival-2.40-1/survival/tests/mstate.R | 201 ++++++- survival-2.40-1/survival/tests/mstate.Rout.save | 231 +++++++- survival-2.40-1/survival/tests/summary_survfit.R | 4 survival-2.40-1/survival/tests/summary_survfit.Rout.save | 12 survival-2.40-1/survival/tests/survSplit.R |only survival-2.40-1/survival/tests/survSplit.Rout.save |only survival-2.40-1/survival/tests/testci.R | 14 survival-2.40-1/survival/tests/testci.Rout.save | 22 survival-2.40-1/survival/tests/testci2.R | 30 - survival-2.40-1/survival/tests/testci2.Rout.save | 39 - survival-2.40-1/survival/vignettes/.install_extras |only survival-2.40-1/survival/vignettes/adjcurve.Rnw | 28 survival-2.40-1/survival/vignettes/compete.Rnw | 20 survival-2.40-1/survival/vignettes/mstate.rda |only survival-2.40-1/survival/vignettes/multi.Rnw |only 93 files changed, 1854 insertions(+), 1004 deletions(-)
Title: GNU Privacy Guard for R
Description: Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods.
Includes utilities for public key encryption, creating and verifying digital signatures,
and managing your local keyring. Note that some functionality depends on the version of
GnuPG that is installed on the system. On Windows this package can be used together with
'GPG4Win' which provides a GUI for managing keys and entering passphrases.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between gpg versions 0.3 dated 2016-10-21 and 0.4 dated 2016-10-30
DESCRIPTION | 12 - MD5 | 29 ++-- NAMESPACE | 2 NEWS | 5 R/keys.R | 18 ++ R/password.R | 13 + R/signing.R | 8 - inst/doc/intro.R | 31 ++-- inst/doc/intro.Rmd | 84 +++++++---- inst/doc/intro.html | 373 +++++++++++++++++++++++++++++----------------------- man/gpg_keys.Rd | 3 src/engine.c | 15 +- src/keys.c | 17 +- src/keysig.c |only src/sign.c | 72 ++++++---- vignettes/intro.Rmd | 84 +++++++---- 16 files changed, 474 insertions(+), 292 deletions(-)
Title: Penalized Likelihood Estimation and Dynamic Prediction under the
Joint Frailty-Copula Models Between Tumour Progression and
Death for Meta-Analysis
Description: Perform the Cox regression and dynamic prediction under the joint frailty-copula model between tumour progression and death for meta-analysis.
The method is applicable for meta-analytic data combining several studies. The data should have information on both terminal event time (e.g., time-to-death) and non-terminal event time (e.g., time-to-tumour progression).
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between joint.Cox versions 2.9 dated 2016-10-22 and 2.10 dated 2016-10-30
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++++---- R/jointCox.indep.reg.R | 8 ++++---- R/jointCox.reg.R | 8 ++++---- data/dataOvarian1.rda |only data/dataOvarian2.rda |only data/datalist |only man/dataOvarian1.Rd |only man/dataOvarian2.Rd |only man/joint.Cox-package.Rd | 4 ++-- 10 files changed, 23 insertions(+), 18 deletions(-)
Title: Holonomic Gradient Method and Gradient Descent
Description: The holonomic gradient method (HGM, hgm) gives a way to evaluate normalization
constants of unnormalized probability distributions by utilizing holonomic
systems of differential or difference equations. The holonomic gradient descent (HGD, hgd) gives a method
to find maximal likelihood estimates by utilizing the HGM.
Author: Nobuki Takayama, Tamio Koyama, Tomonari Sei, Hiromasa Nakayama, Kenta Nishiyama
Maintainer: Nobuki Takayama <takayama@math.kobe-u.ac.jp>
Diff between hgm versions 1.11 dated 2015-04-03 and 1.16 dated 2016-10-30
DESCRIPTION | 8 MD5 | 37 +-- NAMESPACE | 1 R/hgm.c2wishart.R |only R/hgm.cwishart.R | 19 + R/zhgm_names.R | 1 man/hgm-package.Rd | 4 man/hgm.c2wishart.Rd |only man/hgm.cwishart.Rd | 37 ++- src/code-n-2f1.c |only src/code-n.c | 14 - src/jack-n.c | 603 +++++++++++++++++++++++++++++++++++++++++++++------ src/mh-r.c | 43 +++ src/mh.c | 161 +++++++++++++ src/mh.h | 18 + src/oxprint.h | 1 src/rk.c | 19 - src/sfile.c | 6 src/sfile.h | 8 src/usage-jack-n.h |only src/usage-w-n.h |only src/wmain.c | 392 ++++++++++++++++++++++++++++----- 22 files changed, 1205 insertions(+), 167 deletions(-)
Title: Access to the LinkedIn API via R
Description: A series of functions that allow users
to access the 'LinkedIn' API to get information about connections,
search for people and jobs, share updates with their network,
and create group discussions. For more information about using
the API please visit <https://developer.linkedin.com/>.
Author: Michael Piccirilli <michael.r.piccirilli@gmail.com>
Maintainer: Michael Piccirilli <michael.r.piccirilli@gmail.com>
Diff between Rlinkedin versions 0.1 dated 2015-05-04 and 0.2 dated 2016-10-30
Rlinkedin-0.1/Rlinkedin/README.md |only Rlinkedin-0.2/Rlinkedin/DESCRIPTION | 17 ++++--- Rlinkedin-0.2/Rlinkedin/MD5 | 55 +++++++++++------------ Rlinkedin-0.2/Rlinkedin/NAMESPACE | 4 + Rlinkedin-0.2/Rlinkedin/R/Rlinkedin-package.R | 11 ++-- Rlinkedin-0.2/Rlinkedin/R/getCompany.R | 24 +++++++--- Rlinkedin-0.2/Rlinkedin/R/getGroupPosts.R | 16 +++++- Rlinkedin-0.2/Rlinkedin/R/getGroups.R | 28 ++++++++--- Rlinkedin-0.2/Rlinkedin/R/getJobs.R | 17 ++++++- Rlinkedin-0.2/Rlinkedin/R/getMyConnections.R | 13 +++++ Rlinkedin-0.2/Rlinkedin/R/getProfile.R | 30 ++++++++++-- Rlinkedin-0.2/Rlinkedin/R/inOAuth.R | 9 ++- Rlinkedin-0.2/Rlinkedin/R/searchCompanies.R | 19 +++---- Rlinkedin-0.2/Rlinkedin/R/searchJobs.R | 19 +++++-- Rlinkedin-0.2/Rlinkedin/R/searchPeople.R | 20 ++++++-- Rlinkedin-0.2/Rlinkedin/R/submitGroupPost.R | 9 +++ Rlinkedin-0.2/Rlinkedin/man/Rlinkedin-package.Rd | 8 +-- Rlinkedin-0.2/Rlinkedin/man/getCompany.Rd | 6 +- Rlinkedin-0.2/Rlinkedin/man/getGroupPosts.Rd | 6 +- Rlinkedin-0.2/Rlinkedin/man/getGroups.Rd | 6 +- Rlinkedin-0.2/Rlinkedin/man/getJobs.Rd | 12 ++--- Rlinkedin-0.2/Rlinkedin/man/getMyConnections.Rd | 10 ++-- Rlinkedin-0.2/Rlinkedin/man/getProfile.Rd | 14 +++-- Rlinkedin-0.2/Rlinkedin/man/inOAuth.Rd | 6 +- Rlinkedin-0.2/Rlinkedin/man/searchCompanies.Rd | 2 Rlinkedin-0.2/Rlinkedin/man/searchJobs.Rd | 6 +- Rlinkedin-0.2/Rlinkedin/man/searchPeople.Rd | 6 +- Rlinkedin-0.2/Rlinkedin/man/submitGroupPost.Rd | 16 +++--- Rlinkedin-0.2/Rlinkedin/man/submitShare.Rd | 2 29 files changed, 261 insertions(+), 130 deletions(-)
Title: Performance Analysis and Companion Functions for Binary
Classification Models
Description: Provides companion function for analysing the performance of
classification models. Also, provides function to optimise probability cut-
off score based on used specified objectives, Plot 'ROC' Curve in 'ggplot2',
'AUROC', 'IV', 'WOE' Calculation, 'KS Statistic' etc to aid accuracy improvement
in binary classification models.
Author: Selva Prabhakaran
Maintainer: Selva Prabhakaran <selva86@gmail.com>
Diff between InformationValue versions 1.2.1 dated 2015-12-06 and 1.2.3 dated 2016-10-30
DESCRIPTION | 17 +++++-- MD5 | 56 ++++++++++++------------- NAMESPACE | 6 +- R/Main.R | 6 -- R/playground.R | 28 +++++++++++- README.md | 89 +++++++++++++++++++++++------------------ data/ActualsAndScores.RData |binary data/SimData.RData |binary inst/doc/InformationValue.html | 28 ++++-------- man/AUROC.Rd | 2 man/ActualsAndScores.Rd | 2 man/Concordance.Rd | 2 man/IV.Rd | 2 man/SimData.Rd | 2 man/WOE.Rd | 2 man/WOETable.Rd | 2 man/confusionMatrix.Rd | 2 man/kappaCohen.Rd | 2 man/ks_plot.Rd | 2 man/ks_stat.Rd | 4 - man/misClassError.Rd | 2 man/npv.Rd | 2 man/optimalCutoff.Rd | 2 man/plotROC.Rd | 2 man/precision.Rd | 2 man/sensitivity.Rd | 2 man/somersD.Rd | 2 man/specificity.Rd | 2 man/youdensIndex.Rd | 2 29 files changed, 153 insertions(+), 119 deletions(-)
More information about InformationValue at CRAN
Permanent link
Title: Companion to Applied Linear Statistical Models
Description: Functions and Data set to Accompany Applied Linear Statistical
Models Fifth Edition, Michael H. Kutner; Christopher J. Nachtsheim; John Neter;
William Li, 2005.(ISBN-10: 0071122214, ISBN-13: 978-0071122214, <https://www.amazon.co.uk/Applied-Linear-Statistical-Models-Intl/dp/0071122214>) Present the function on the package that does not exist in
the R. In this version of the package Chapters 1 to 9 and 16 to 18, have been investigated. In
future versions more chapters to be checked.
Author: Ali Ghanbari <a.ghanbari541@gmail.com>
Maintainer: Ali Ghanbari <a.ghanbari541@gmail.com>
Diff between ALSM versions 0.1.0 dated 2016-09-09 and 0.1.1 dated 2016-10-30
DESCRIPTION | 12 +++++------ MD5 | 38 +++++++++++++++++++++++++++++-------- NAMESPACE | 19 ++++++++++++++++++ R/16_17_18_oneway.R |only R/3_bftest.R | 2 - R/6_ci.reg.R | 4 +-- R/9_model.s.R | 2 - data/ABTElectronicsCorporation.rda |only data/CashOffers.rda |only data/FillingMachines.rda |only data/HayFeverRelief.rda |only data/KentonFoodCompany.rda |only data/ProductivityImprovement.rda |only data/ProgrammerRequirements.rda |only data/RustInhibitor.rda |only data/ServoData.rda |only data/WindingSpeeds.rda |only man/9_AICp.Rd | 2 - man/9_SBCp.Rd | 2 - man/9_boxcox.sse.Rd | 2 + man/ABTElectronicsCorporation.Rd |only man/CashOffers.Rd |only man/FillingMachines.Rd |only man/HayFeverRelief.Rd |only man/KentonFoodCompany.Rd |only man/ProductivityImprovement.Rd |only man/ProgrammerRequirements.Rd |only man/RustInhibitor.Rd |only man/ServoData.Rd |only man/WindingSpeeds.Rd |only man/oneway.Rd |only 31 files changed, 63 insertions(+), 20 deletions(-)