Title: Microsoft Word and PowerPoint Documents Generation
Description: Create 'Microsoft Word' document (>=2007),
'Microsoft PowerPoint' document (>=2007) and 'HTML' documents from R. There are
several features to let you format and present R outputs ; e.g. Editable
Vector Graphics, functions for complex tables reporting, reuse of corporate
template document. You can use the package as a tool for fast reporting
and as a tool for reporting automation. The package does not require
any installation of Microsoft product to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Bootstrap [ctb, cph] (Bootstrap development team),
jQuery [ctb, cph] (The jQuery Foundation)
Maintainer: David Gohel <david.gohel@lysis-consultants.fr>
Diff between ReporteRs versions 0.8.6 dated 2016-03-08 and 0.8.7 dated 2016-11-05
ReporteRs-0.8.6/ReporteRs/R/BootstrapMenu.R |only ReporteRs-0.8.6/ReporteRs/R/DropDownMenu.R |only ReporteRs-0.8.6/ReporteRs/R/addBootstrapMenu.R |only ReporteRs-0.8.6/ReporteRs/R/addFooter.bsdoc.R |only ReporteRs-0.8.6/ReporteRs/R/addIframe.bsdoc.R |only ReporteRs-0.8.6/ReporteRs/R/addLinkItem.R |only ReporteRs-0.8.6/ReporteRs/R/addMarkdown.pptx.R |only ReporteRs-0.8.6/ReporteRs/man/BootstrapMenu.Rd |only ReporteRs-0.8.6/ReporteRs/man/DropDownMenu.Rd |only ReporteRs-0.8.6/ReporteRs/man/addBootstrapMenu.Rd |only ReporteRs-0.8.6/ReporteRs/man/addFooter.bsdoc.Rd |only ReporteRs-0.8.6/ReporteRs/man/addIframe.Rd |only ReporteRs-0.8.6/ReporteRs/man/addIframe.bsdoc.Rd |only ReporteRs-0.8.6/ReporteRs/man/addLinkItem.Rd |only ReporteRs-0.8.6/ReporteRs/man/addMarkdown.pptx.Rd |only ReporteRs-0.8.6/ReporteRs/tests/testthat/test-bsdoc-img.R |only ReporteRs-0.8.6/ReporteRs/tests/testthat/test-bsdoc-plot.R |only ReporteRs-0.8.7/ReporteRs/DESCRIPTION | 15 ReporteRs-0.8.7/ReporteRs/MD5 | 155 ++++----- ReporteRs-0.8.7/ReporteRs/NAMESPACE | 9 ReporteRs-0.8.7/ReporteRs/NEWS | 25 + ReporteRs-0.8.7/ReporteRs/R/00_AllGeneric.R | 59 +-- ReporteRs-0.8.7/ReporteRs/R/01_tools.R | 16 - ReporteRs-0.8.7/ReporteRs/R/FlexRow.R | 3 ReporteRs-0.8.7/ReporteRs/R/FlexTable.R | 5 ReporteRs-0.8.7/ReporteRs/R/FlexTablePublicAPI.R | 11 ReporteRs-0.8.7/ReporteRs/R/FlexTableUpdateTools.R | 24 - ReporteRs-0.8.7/ReporteRs/R/Footnote.R | 9 ReporteRs-0.8.7/ReporteRs/R/Lists.R | 101 +++--- ReporteRs-0.8.7/ReporteRs/R/RScript.R | 62 +-- ReporteRs-0.8.7/ReporteRs/R/ReporteRs.R | 8 ReporteRs-0.8.7/ReporteRs/R/addCodeBlock.R | 11 ReporteRs-0.8.7/ReporteRs/R/addFlexTable.R | 9 ReporteRs-0.8.7/ReporteRs/R/addMarkdown.bsdoc.R | 6 ReporteRs-0.8.7/ReporteRs/R/addMarkdown.docx.R | 6 ReporteRs-0.8.7/ReporteRs/R/addParagraph.R | 15 ReporteRs-0.8.7/ReporteRs/R/addPlot.R | 160 +--------- ReporteRs-0.8.7/ReporteRs/R/addRScript.R | 7 ReporteRs-0.8.7/ReporteRs/R/addSlide.R | 6 ReporteRs-0.8.7/ReporteRs/R/addTOC.R | 11 ReporteRs-0.8.7/ReporteRs/R/addTitle.R | 8 ReporteRs-0.8.7/ReporteRs/R/bootstrap.copy.R | 6 ReporteRs-0.8.7/ReporteRs/R/bsdoc.R | 9 ReporteRs-0.8.7/ReporteRs/R/cellProperties.R | 24 - ReporteRs-0.8.7/ReporteRs/R/docx.R | 3 ReporteRs-0.8.7/ReporteRs/R/is.color.R | 2 ReporteRs-0.8.7/ReporteRs/R/java_description.R | 5 ReporteRs-0.8.7/ReporteRs/R/parProperties.R | 8 ReporteRs-0.8.7/ReporteRs/R/pot.R | 15 ReporteRs-0.8.7/ReporteRs/R/pptx.R | 3 ReporteRs-0.8.7/ReporteRs/R/pptx.graphic.R | 5 ReporteRs-0.8.7/ReporteRs/R/set_of_pot.R | 21 - ReporteRs-0.8.7/ReporteRs/R/textProperties.R | 8 ReporteRs-0.8.7/ReporteRs/R/writeDoc.R | 25 - ReporteRs-0.8.7/ReporteRs/inst/java/ReporteRs-0.8.jar |binary ReporteRs-0.8.7/ReporteRs/java/ReporteRs-0.8-src.jar |binary ReporteRs-0.8.7/ReporteRs/man/FlexTable-alter.Rd | 3 ReporteRs-0.8.7/ReporteRs/man/FlexTable.Rd | 3 ReporteRs-0.8.7/ReporteRs/man/Footnote.Rd | 81 +---- ReporteRs-0.8.7/ReporteRs/man/ReporteRs-package.Rd | 12 ReporteRs-0.8.7/ReporteRs/man/addCodeBlock.Rd | 12 ReporteRs-0.8.7/ReporteRs/man/addFlexTable.Rd | 10 ReporteRs-0.8.7/ReporteRs/man/addFooter.Rd | 5 ReporteRs-0.8.7/ReporteRs/man/addHeaderRow.Rd | 2 ReporteRs-0.8.7/ReporteRs/man/addImage.Rd | 2 ReporteRs-0.8.7/ReporteRs/man/addMarkdown.Rd | 8 ReporteRs-0.8.7/ReporteRs/man/addMarkdown.bsdoc.Rd | 103 ------ ReporteRs-0.8.7/ReporteRs/man/addMarkdown.docx.Rd | 103 ------ ReporteRs-0.8.7/ReporteRs/man/addParagraph.Rd | 73 ---- ReporteRs-0.8.7/ReporteRs/man/addPlot.Rd | 58 --- ReporteRs-0.8.7/ReporteRs/man/addRScript.Rd | 12 ReporteRs-0.8.7/ReporteRs/man/addTOC.Rd | 24 - ReporteRs-0.8.7/ReporteRs/man/addTitle.Rd | 14 ReporteRs-0.8.7/ReporteRs/man/borderProperties.Rd | 2 ReporteRs-0.8.7/ReporteRs/man/bsdoc.Rd | 145 --------- ReporteRs-0.8.7/ReporteRs/man/colorProperties.Rd | 2 ReporteRs-0.8.7/ReporteRs/man/doc-list-settings.Rd | 33 +- ReporteRs-0.8.7/ReporteRs/man/docx-bookmark.Rd | 2 ReporteRs-0.8.7/ReporteRs/man/docx.Rd | 5 ReporteRs-0.8.7/ReporteRs/man/parProperties.Rd | 2 ReporteRs-0.8.7/ReporteRs/man/pot.Rd | 3 ReporteRs-0.8.7/ReporteRs/man/pptx.Rd | 5 ReporteRs-0.8.7/ReporteRs/man/set_of_paragraphs.Rd | 7 ReporteRs-0.8.7/ReporteRs/man/shortcut_properties.Rd | 24 - ReporteRs-0.8.7/ReporteRs/man/textProperties.Rd | 4 ReporteRs-0.8.7/ReporteRs/man/writeDoc.Rd | 11 ReporteRs-0.8.7/ReporteRs/tests/testthat/test-file-extensions.R | 9 87 files changed, 416 insertions(+), 1238 deletions(-)
Title: Random Forests for Survival, Regression and Classification
(RF-SRC)
Description: A unified treatment of Breiman's random forests for survival, regression and classification problems based on Ishwaran and Kogalur's random survival forests (RSF) package. The package runs in both serial and parallel (OpenMP) modes. Now extended to include multivariate and unsupervised forests.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 2.4.0 dated 2016-11-02 and 2.4.1 dated 2016-11-05
DESCRIPTION | 8 +++--- MD5 | 60 +++++++++++++++++++++++----------------------- R/cindex.R | 2 - R/data.utilities.R | 2 - R/factor.utilities.R | 2 - R/find.interaction.R | 2 - R/generic.impute.rfsrc.R | 2 - R/generic.predict.rfsrc.R | 4 +-- R/impute.rfsrc.R | 2 - R/max.subtree.R | 2 - R/partial.rfsrc.R | 2 - R/plot.competing.risk.R | 2 - R/plot.rfsrc.R | 2 - R/plot.survival.R | 2 - R/plot.variable.R | 2 - R/predict.rfsrc.R | 2 - R/print.rfsrc.R | 2 - R/rf2rfz.R | 2 - R/rfsrc.R | 4 +-- R/rfsrc.news.R | 2 - R/rfsrcSyn.R | 2 - R/stat.split.R | 2 - R/utilities.R | 2 - R/var.select.R | 2 - R/vimp.R | 2 - R/zzz.R | 2 - configure.ac | 2 - inst/NEWS | 11 ++++++-- inst/doc/rsf-Rnews.pdf |binary src/randomForestSRC.c | 16 ++++++------ src/randomForestSRC.h | 10 +++---- 31 files changed, 82 insertions(+), 77 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Visualize Species Occurrence Data
Description: Utilities for visualizing species occurrence data. Includes
functions to visualize occurrence data from 'spocc', 'rgbif',
and other packages. Mapping options included for base R plots, 'ggplot2',
'ggmap', 'leaflet' and 'GitHub' 'gists'.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between mapr versions 0.2.0 dated 2016-01-28 and 0.3.0 dated 2016-11-05
DESCRIPTION | 21 ++--- MD5 | 65 +++++++++-------- NAMESPACE | 16 +--- NEWS.md | 14 +++ R/colors.R |only R/hull.R |only R/latlong_guesser.R | 25 ++++-- R/map_ggmap.R | 112 +++++++++++++++++++++--------- R/map_ggplot.R | 109 +++++++++++++++++++++-------- R/map_gist.R | 34 +++++---- R/map_leaflet.R | 101 +++++++++++++++++++++------ R/map_plot.R | 134 +++++++++++++++++++++++++++++------- R/mapr-package.R | 51 +++++++++---- R/occ2sp.R | 40 +++++++--- R/util_github.r | 8 +- R/zzz.r | 8 ++ README.md | 8 +- build/vignette.rds |binary data |only inst/doc/mapr_vignette.Rmd | 14 +-- inst/doc/mapr_vignette.html | 20 ++--- man/gbif_eg1.Rd |only man/hull.Rd |only man/map_ggmap.Rd | 38 ++++++++-- man/map_ggplot.Rd | 50 ++++--------- man/map_gist.Rd | 11 ++ man/map_leaflet.Rd | 37 ++++++++- man/map_plot.Rd | 50 +++++-------- man/mapr-package.Rd | 17 ++-- man/occ2sp.Rd | 17 ++-- man/occdat_eg1.Rd |only man/style_geojson.Rd | 5 - vignettes/img/unnamed-chunk-5-1.png |binary vignettes/img/unnamed-chunk-6-1.png |binary vignettes/img/unnamed-chunk-7-1.png |binary vignettes/mapr_vignette.Rmd | 14 +-- 36 files changed, 683 insertions(+), 336 deletions(-)
Title: Using R to Install Stuff (Such As: R, 'Rtools', 'RStudio',
'Git', and More!)
Description: R is great for installing software. Through the 'installr'
package you can automate the updating of R (on Windows, using updateR())
and install new software. Software installation is initiated through a
GUI (just run installr()), or through functions such as: install.Rtools(),
install.pandoc(), install.git(), and many more. The updateR() command
performs the following: finding the latest R version, downloading it,
running the installer, deleting the installation file, copy and updating
old packages to the new R installation.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com),
Barry Rowlingson [ctb],
Boris Hejblum [ctb],
Dason [ctb],
Felix Schonbrodt [ctb],
G. Grothendieck [ctb],
GERGELY DAROCZI [ctb],
Heuristic Andrew [ctb],
James [ctb] (http://stackoverflow.com/users/269476/james),
Thomas Leeper [ctb] (http://thomasleeper.com/),
VitoshKa [ctb],
Yihui Xie [ctb] (http://yihui.name),
Michael Friendly [ctb] (http://datavis.ca/),
Kornelius Rohmeyer [ctb] (http://algorithm-forge.com/techblog/),
Dieter Menne [ctb],
Tyler Hunt [ctb] (https://github.com/JackStat),
Takekatsu Hiramura [ctb] (https://github.com/hiratake55),
Berry Boessenkool [ctb] (https://github.com/BerryBoessenkool),
Jonathan Godfrey [ctb] (https://github.com/ajrgodfrey),
Tom Allard [ctb]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between installr versions 0.17.8 dated 2016-05-14 and 0.18.0 dated 2016-11-05
ChangeLog | 108 ++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 23 +++++--- MD5 | 63 +++++++++++----------- NAMESPACE | 2 NEWS | 12 ++++ NEWS.md |only R/RStudio_CRAN_data.R | 2 R/geo_functions.R | 4 - R/install.R | 55 +++++++++++++------ R/installPython.R |only R/is.x.R | 5 + R/os.manage.R | 4 - R/rename_r_to_R.R | 2 R/updateR.R | 16 +++-- R/xlsx2csv.R | 2 README.md | 6 +- man/ask.user.yn.question.Rd | 2 man/checkMD5sums2.Rd | 2 man/cranometer.Rd | 4 - man/download_RStudio_CRAN_data.Rd | 2 man/file.name.from.url.Rd | 2 man/install.MikTeX.Rd | 2 man/install.Rtools.Rd | 4 - man/install.URL.Rd | 2 man/install.packages.zip.Rd | 2 man/install.python.Rd |only man/installr.Rd | 2 man/is.exe.installed.Rd | 4 - man/os.manage.Rd | 4 - man/package_authors.Rd | 2 man/rename_r_to_R.Rd | 2 man/source.https.Rd | 2 man/updateR.Rd | 4 + man/xlsx2csv.Rd | 2 34 files changed, 256 insertions(+), 92 deletions(-)
Title: Interactive Heat Maps Using 'plotly'
Description: Create interactive 'heatmaps' that are usable from the R console,
in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps.
Hover the mouse pointer over a cell to show details or drag a rectangle to
zoom. A 'heatmap' is a popular graphical method for visualizing high-dimensional
data, in which a table of numbers are encoded as a grid of colored cells. The
rows and columns of the matrix are ordered to highlight patterns and are often
accompanied by 'dendrograms'. 'Heatmaps' are used in many fields for visualizing
observations, correlations, missing values patterns, and more. Interactive
'heatmaps' allow the inspection of specific value by hovering the mouse over a
cell, as well as zooming into a region of the 'heatmap' by dragging a rectangle
around the relevant area. This work is based on the 'ggplot2' and 'plotly.js'
engine. It produces similar 'heatmaps' as 'd3heatmap', with the advantage of speed
('plotly.js' is able to handle larger size matrix), and the ability to zoom from
the 'dendrogram' panes.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com),
Alan Ocallaghan [ctb] (https://github.com/Alanocallaghan),
Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between heatmaply versions 0.5.0 dated 2016-08-27 and 0.6.0 dated 2016-11-05
ChangeLog | 177 ++++++++++++++++ DESCRIPTION | 34 +-- MD5 | 29 +- NAMESPACE | 1 NEWS | 14 + NEWS.md | 14 + R/heatmaply.R | 500 ++++++++++++++++++++++++++++++++---------------- R/heatmapr.R | 42 +++- README.md | 9 inst/doc/heatmaply.R | 67 ++++-- inst/doc/heatmaply.Rmd | 96 +++++++-- inst/doc/heatmaply.html | 217 +++++++++++--------- man/heatmaply.Rd | 79 ++++++- man/heatmapr.Rd | 9 man/side_color_plot.Rd |only vignettes/heatmaply.Rmd | 96 +++++++-- 16 files changed, 1021 insertions(+), 363 deletions(-)
Title: Utilities for Graphical Rendering
Description: Useful tools for writing vector graphics devices.
Author: David Gohel [aut, cre],
Hadley Wickham [aut],
Lionel Henry [aut],
Jeroen Ooms [aut],
Yixuan Qiu [ctb],
R Core Team [cph] (Cairo code from X11 device),
RStudio [cph]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between gdtools versions 0.1.1 dated 2016-11-01 and 0.1.2 dated 2016-11-05
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 4 ++++ src/CairoContext.cpp | 2 -- src/sys_fonts.cpp | 2 -- tests/testthat/test-font_family_exists.R | 7 +++++++ tests/testthat/test-str_extents.R | 2 +- 7 files changed, 21 insertions(+), 14 deletions(-)
Title: Regression Spline Functions and Classes Too
Description: A complementary package on splines providing functions
constructing B-splines, monotone splines (M-splines) and its integral
(I-splines), convex splines (C-splines), and integral of B-splines.
Piecewise constant basis is allowed for B-spline and M-spline basis.
Author: Wenjie Wang [aut, cre],
Jun Yan [aut]
Maintainer: Wenjie Wang <wenjie.2.wang@uconn.edu>
Diff between splines2 versions 0.2.1 dated 2016-10-07 and 0.2.2 dated 2016-11-05
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- NEWS.md | 7 +++++++ R/bSpline.R | 27 ++++++++++++++++++++++++++- R/cSpline.R | 24 +++++++++++++++++++----- R/iSpline.R | 17 +++++++++++++++-- R/ibs.R | 5 +++-- R/mSpline.R | 3 ++- README.md | 40 ++++++++++++++++++++++++---------------- inst/CITATION | 4 ++-- inst/doc/splines2-intro.html | 4 ++-- man/ibs.Rd | 2 +- 12 files changed, 118 insertions(+), 49 deletions(-)
Title: Tools for Polyploid Microsatellite Analysis
Description: A collection of tools to handle microsatellite data of
any ploidy (and samples of mixed ploidy) where allele copy number is not
known in partially heterozygous genotypes. It can import and export data in
ABI 'GeneMapper', 'Structure', 'ATetra', 'Tetrasat'/'Tetra', 'GenoDive', 'SPAGeDi',
'POPDIST', 'STRand', and binary presence/absence formats. It can calculate
pairwise distances between individuals using a stepwise mutation model or
infinite alleles model, with or without taking ploidies and allele frequencies
into account. These distances can be used for the calculation of clonal
diversity statistics or used for further analysis in R. Allelic diversity
statistics are also available. polysat can assist the user in estimating the
ploidy of samples, and it can estimate allele frequencies in
populations, calculate pairwise Fst values based on those frequencies, and
export allele frequencies to 'SPAGeDi' and 'adegenet'. Functions are also
included for assigning alleles to isoloci in cases where one pair of
microsatellite primers amplifies alleles from two or more independently
segregating isoloci.
Author: Lindsay V. Clark [aut, cre]
Maintainer: Lindsay V. Clark <lvclark@illinois.edu>
Diff between polysat versions 1.5-0 dated 2016-07-18 and 1.6-0 dated 2016-11-05
DESCRIPTION | 8 MD5 | 23 NEWS | 12 R/allopolyploidy.R | 533 ++++++++++--------- inst/doc/allopolyVignette.R | 71 +- inst/doc/allopolyVignette.Rnw | 90 +-- inst/doc/allopolyVignette.pdf |binary inst/doc/polysattutorial.R | 307 +++++++++- inst/doc/polysattutorial.pdf |binary man/alleleCorrelations.Rd | 104 ++- man/plotSSAllo.Rd | 17 vignettes/allopolyVignette.Rnw | 90 +-- vignettes/vignettebuild/AllopolyTutorialAssign.RData |only 13 files changed, 821 insertions(+), 434 deletions(-)
Title: Serialization Interface for Large List Objects
Description: Functions to write or append a R list to a file, as well as read, remove, modify elements from it without restoring the whole list.
Author: Yuchun Zhang
Maintainer: Yuchun Zhang <yczhangvrc@gmail.com>
Diff between largeList versions 0.2.0 dated 2016-08-28 and 0.3.0 dated 2016-11-05
largeList-0.2.0/largeList/R/exports.R |only largeList-0.2.0/largeList/src/checkType.cpp |only largeList-0.2.0/largeList/src/getListLength.cpp |only largeList-0.2.0/largeList/src/getListName.cpp |only largeList-0.2.0/largeList/src/largeList.h |only largeList-0.2.0/largeList/src/modifyInList.cpp |only largeList-0.2.0/largeList/src/modifyNameInList.cpp |only largeList-0.2.0/largeList/src/readList.cpp |only largeList-0.2.0/largeList/src/readObject.cpp |only largeList-0.2.0/largeList/src/removeFromList.cpp |only largeList-0.2.0/largeList/src/saveList.cpp |only largeList-0.2.0/largeList/src/serializedLength.cpp |only largeList-0.2.0/largeList/src/utils.cpp |only largeList-0.2.0/largeList/src/writeObject.cpp |only largeList-0.3.0/largeList/DESCRIPTION | 11 largeList-0.3.0/largeList/MD5 | 70 ++-- largeList-0.3.0/largeList/NAMESPACE | 4 largeList-0.3.0/largeList/R/Exports.R |only largeList-0.3.0/largeList/R/description.R | 19 - largeList-0.3.0/largeList/R/operatorOverload.R | 270 +++++++++++------ largeList-0.3.0/largeList/man/cash-.largeList.Rd |only largeList-0.3.0/largeList/man/cash-set-.largeList.Rd |only largeList-0.3.0/largeList/man/getList.Rd | 9 largeList-0.3.0/largeList/man/getListLength.Rd | 2 largeList-0.3.0/largeList/man/getListName.Rd | 2 largeList-0.3.0/largeList/man/isListCompressed.Rd |only largeList-0.3.0/largeList/man/largeList.Rd | 16 - largeList-0.3.0/largeList/man/length-set-.largeList.Rd |only largeList-0.3.0/largeList/man/length.largeList.Rd | 5 largeList-0.3.0/largeList/man/modifyInList.Rd | 10 largeList-0.3.0/largeList/man/modifyNameInList.Rd | 6 largeList-0.3.0/largeList/man/names-set-.largeList.Rd | 5 largeList-0.3.0/largeList/man/names.largeList.Rd | 5 largeList-0.3.0/largeList/man/print.largeList.Rd | 6 largeList-0.3.0/largeList/man/readList.Rd | 12 largeList-0.3.0/largeList/man/removeFromList.Rd | 8 largeList-0.3.0/largeList/man/saveList.Rd | 14 largeList-0.3.0/largeList/man/sub-.largeList.Rd | 9 largeList-0.3.0/largeList/man/sub-sub-.largeList.Rd | 8 largeList-0.3.0/largeList/man/sub-subset-.largeList.Rd | 11 largeList-0.3.0/largeList/man/subset-.largeList.Rd | 16 - largeList-0.3.0/largeList/src/Makevars |only largeList-0.3.0/largeList/src/connection.cpp |only largeList-0.3.0/largeList/src/index_object.cpp |only largeList-0.3.0/largeList/src/large_list.h |only largeList-0.3.0/largeList/src/list_object.cpp |only largeList-0.3.0/largeList/src/modify_remove_list.cpp |only largeList-0.3.0/largeList/src/name_position_tuple.cpp |only largeList-0.3.0/largeList/src/save_read_list.cpp |only largeList-0.3.0/largeList/src/unit_object.cpp |only 50 files changed, 346 insertions(+), 172 deletions(-)
Title: Explanation of Predictions for Classification and Regression
Models
Description: Package contains methods to generate explanations for individual predictions of
classification and regression models. Weighted averages of individual explanations form explanation of the whole model.
The package extends 'CORElearn' package, but other prediction models can also be explained using a wrapper.
Author: Marko Robnik-Sikonja
Maintainer: Marko Robnik-Sikonja <marko.robnik@fri.uni-lj.si>
Diff between ExplainPrediction versions 1.0.2 dated 2015-09-06 and 1.1.4 dated 2016-11-05
ChangeLog | 7 + DESCRIPTION | 9 +- MD5 | 13 +-- NAMESPACE | 2 R/explain.R | 164 ++++++++++++++++++++++++++++----------- man/ExplainPrediction-package.Rd | 2 man/explanation.Rd | 65 +++++++++------ man/wrap4Explanation.Rd |only 8 files changed, 181 insertions(+), 81 deletions(-)
More information about ExplainPrediction at CRAN
Permanent link
Title: Implementation of the DetMCD Algorithm (Robust and Deterministic
Estimation of Location and Scatter)
Description: Implementation of DetMCD, a new algorithm for robust and deterministic estimation of location and scatter. The benefits of robust and deterministic estimation are explained in Hubert, Rousseeuw and Verdonck (2012) <doi:10.1080/10618600.2012.672100>.
Author: Vakili Kaveh [aut, cre],
Mia Hubert [ths]
Maintainer: Vakili Kaveh <vakili.kaveh.email@gmail.com>
Diff between DetMCD versions 0.0.3 dated 2016-01-25 and 0.0.4 dated 2016-11-05
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/DetMCD.R | 4 ++-- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Analysis of Queueing Networks and Models
Description: It provides versatile tools for analysis of birth and death based Markovian Queueing Models
and Single and Multiclass Product-Form Queueing Networks.
It implements M/M/1, M/M/c, M/M/Infinite, M/M/1/K, M/M/c/K, M/M/c/c, M/M/1/K/K, M/M/c/K/K, M/M/c/K/m, M/M/Infinite/K/K,
Multiple Channel Open Jackson Networks, Multiple Channel Closed Jackson Networks,
Single Channel Multiple Class Open Networks, Single Channel Multiple Class Closed Networks
and Single Channel Multiple Class Mixed Networks.
Also it provides a B-Erlang, C-Erlang and Engset calculators.
This work is dedicated to the memory of D. Sixto Rios Insua.
Author: Pedro Canadilla
Maintainer: Pedro Canadilla <pedro.canadilla@gmail.com>
Diff between queueing versions 0.2.7 dated 2016-08-13 and 0.2.8 dated 2016-11-05
ChangeLog | 5 ++++ DESCRIPTION | 10 ++++---- MD5 | 12 +++++----- NAMESPACE | 2 - R/queueing.R | 67 ++++++++++++++++++++++++++++++++++++++++---------------- inst/CITATION | 2 - man/B_erlang.Rd | 7 +++++ 7 files changed, 72 insertions(+), 33 deletions(-)
Title: Get the Timezone Information
Description: A function to retrieve the system timezone on Unix systems
which has been found to find an answer when 'Sys.timezone()' has failed.
It is based on an answer by Duane McCully posted on 'StackOverflow', and
adapted to be callable from R. The package also builds on Windows, but
just returns NULL.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between gettz versions 0.0.2 dated 2016-10-18 and 0.0.3 dated 2016-11-05
ChangeLog | 12 ++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- build/partial.rdb |binary src/gettz.cpp | 2 ++ 5 files changed, 22 insertions(+), 8 deletions(-)
Title: Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Description: Recursive partitioning for varying coefficient generalized linear models and ordinal linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal regression.
Author: Reto Buergin [aut, cre, cph],
Gilbert Ritschard [ctb, ths]
Maintainer: Reto Buergin <rbuergin@gmx.ch>
Diff between vcrpart versions 0.4-1 dated 2016-02-23 and 0.4-2 dated 2016-11-05
DESCRIPTION | 11 - MD5 | 70 ++++----- NAMESPACE | 1 NEWS | 13 + R/AllGeneric.R | 64 ++++---- R/fvcm.R | 101 ++++++------- R/import.R | 38 ++--- R/olmm-methods.R | 149 ++++++++++--------- R/olmm-utils.R | 225 ++++++++++++++--------------- R/olmm.R | 153 +++++++++++--------- R/otsplot.R | 60 +++---- R/tvcm-cv.R | 98 ++++++------ R/tvcm-methods.R | 108 +++++++------- R/tvcm-plot.R | 72 ++++----- R/tvcm-utils.R | 395 ++++++++++++++++++++++------------------------------ R/tvcm.R | 120 +++++++-------- R/utils.R | 157 +++++++++----------- inst/CITATION | 49 +++--- man/contr-wsum.Rd | 6 man/fvcm-methods.Rd | 8 - man/fvcm.Rd | 2 man/olmm-gefp.Rd | 2 man/olmm-methods.Rd | 2 man/olmm-predict.Rd | 2 man/olmm-summary.Rd | 2 man/olmm.Rd | 4 man/otsplot.Rd | 4 man/tvcglm.Rd | 2 man/tvcm-control.Rd | 3 man/tvcm-cv.Rd | 2 man/tvcm-methods.Rd | 2 man/tvcm-plot.Rd | 2 man/tvcolmm.Rd | 2 src/Makevars | 1 src/olmm.c | 182 ++++++++++++++++------- src/utils.c | 3 36 files changed, 1083 insertions(+), 1032 deletions(-)
Title: An Algorithm for Morphometric Characters Selection and
Statistical Validation in Morphological Taxonomy
Description: An algorithm (Guisande et al., 2016 <doi:10.11646/zootaxa.4162.3.10>) which identifies the morphometric features that significantly discriminate two taxa and validates the morphological distinctness between them via a Monte-Carlo test, polar coordinates and overlap of the area under the density curve.
Author: Cástor Guisande González
Maintainer: Cástor Guisande González <castor@uvigo.es>
Diff between VARSEDIG versions 1.2 dated 2016-08-07 and 1.3 dated 2016-11-05
DESCRIPTION | 14 ++--- MD5 | 9 ++- NAMESPACE | 12 ----- R/VARSEDIG.R | 131 +++++++++++--------------------------------------------- inst |only man/VARSEDIG.Rd | 14 +++-- 6 files changed, 46 insertions(+), 134 deletions(-)
Title: Resource Selection (Probability) Functions for Use-Availability
Data
Description: Resource Selection (Probability) Functions
for use-availability wildlife data
based on weighted distributions as described in
Lele and Keim (2006) <doi:10.1890/0012-9658(2006)87[3021:WDAEOR]2.0.CO;2>,
Lele (2009) <doi:10.2193/2007-535>,
and Solymos & Lele (2016) <doi:10.1111/2041-210X.12432>.
Author: Subhash R. Lele [aut], Jonah L. Keim [aut], Peter Solymos [aut, cre]
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between ResourceSelection versions 0.2-6 dated 2016-02-16 and 0.3-0 dated 2016-11-05
ResourceSelection-0.2-6/ResourceSelection/inst |only ResourceSelection-0.3-0/ResourceSelection/DESCRIPTION | 20 +- ResourceSelection-0.3-0/ResourceSelection/MD5 | 23 +-- ResourceSelection-0.3-0/ResourceSelection/NAMESPACE | 5 ResourceSelection-0.3-0/ResourceSelection/R/CAICtable.R |only ResourceSelection-0.3-0/ResourceSelection/R/plot.rsf.R | 2 ResourceSelection-0.3-0/ResourceSelection/R/predict.rsf.R | 13 - ResourceSelection-0.3-0/ResourceSelection/R/residuals.rsf.R |only ResourceSelection-0.3-0/ResourceSelection/R/rsf.R | 21 +-- ResourceSelection-0.3-0/ResourceSelection/R/rspf.R | 20 +- ResourceSelection-0.3-0/ResourceSelection/R/vcov.rsf.R | 7 - ResourceSelection-0.3-0/ResourceSelection/man/CAIC.Rd | 21 ++- ResourceSelection-0.3-0/ResourceSelection/man/ResourceSelection-package.Rd | 26 ++- ResourceSelection-0.3-0/ResourceSelection/man/rsf.Rd | 70 ++++++---- 14 files changed, 129 insertions(+), 99 deletions(-)
More information about ResourceSelection at CRAN
Permanent link
Title: Dams in the United States from the National Inventory of Dams
(NID)
Description: The single largest source of dams in the United States is the
National Inventory of Dams (NID) <http://nid.usace.army.mil> from the US
Army Corps of Engineers. Entire data from the NID cannot be obtained all at
once and NID's website limits extraction of more than a couple of thousand
records at a time. Moreover, selected data from the NID's user interface
cannot not be saved to a file. In order to make the analysis of this data
easier, all the data from NID was extracted manually. Subsequently, the raw
data was checked for potential errors and cleaned. This package provides
sample cleaned data from the NID and provides functionality to access the
entire cleaned NID data.
Author: Gopi Goteti [aut],
Joseph Stachelek [aut, cre]
Maintainer: Joseph Stachelek <stachel2@msu.edu>
Diff between dams versions 0.1 dated 2014-05-05 and 0.2 dated 2016-11-05
dams-0.1/dams/NEWS |only dams-0.1/dams/data/nid_sample.rda |only dams-0.1/dams/inst/doc/dams.Rnw |only dams-0.1/dams/inst/doc/dams.pdf |only dams-0.1/dams/man/extract_nid.Rd |only dams-0.1/dams/man/nid_sample.Rd |only dams-0.1/dams/vignettes/dams.Rnw |only dams-0.2/dams/DESCRIPTION | 23 ++- dams-0.2/dams/MD5 | 32 ++-- dams-0.2/dams/NAMESPACE | 9 - dams-0.2/dams/NEWS.md |only dams-0.2/dams/R/data.r | 272 ++++++++++++++++++------------------- dams-0.2/dams/R/extract_nid.r | 84 ++++------- dams-0.2/dams/README.md |only dams-0.2/dams/build/vignette.rds |binary dams-0.2/dams/data/datalist |only dams-0.2/dams/data/nid_cleaned.rda |only dams-0.2/dams/inst/doc/dams.R | 230 +++++++++++-------------------- dams-0.2/dams/inst/doc/dams.Rmd |only dams-0.2/dams/inst/doc/dams.html |only dams-0.2/dams/man/dams.Rd | 27 +-- dams-0.2/dams/man/get_nid.Rd |only dams-0.2/dams/man/nid_cleaned.Rd |only dams-0.2/dams/tests |only dams-0.2/dams/vignettes/dams.Rmd |only 25 files changed, 312 insertions(+), 365 deletions(-)
Title: Tools for Analyzing QTL Experiments
Description: Analysis of experimental crosses to identify genes
(called quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Author: Karl W Broman <kbroman@biostat.wisc.edu> and Hao Wu, with
ideas from Gary Churchill and Saunak Sen and contributions from
Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr
Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron
Wolen, and Brian Yandell
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>
Diff between qtl versions 1.39-5 dated 2016-03-04 and 1.40-8 dated 2016-11-05
qtl-1.39-5/qtl/inst/doc/MQM-tour.R |only qtl-1.39-5/qtl/inst/doc/MQM-tour.pdf |only qtl-1.40-8/qtl/DESCRIPTION | 10 ++-- qtl-1.40-8/qtl/MD5 | 70 ++++++++++++++++----------------- qtl-1.40-8/qtl/R/cim.R | 6 +- qtl-1.40-8/qtl/R/effectplot.R | 2 qtl-1.40-8/qtl/R/plot.R | 3 - qtl-1.40-8/qtl/R/scantwopermhk.R | 4 - qtl-1.40-8/qtl/R/simulate.R | 10 +++- qtl-1.40-8/qtl/R/util.R | 10 +++- qtl-1.40-8/qtl/build/vignette.rds |binary qtl-1.40-8/qtl/data/badorder.RData |binary qtl-1.40-8/qtl/data/bristle3.RData |binary qtl-1.40-8/qtl/data/bristleX.RData |binary qtl-1.40-8/qtl/data/fake.4way.RData |binary qtl-1.40-8/qtl/data/fake.bc.RData |binary qtl-1.40-8/qtl/data/fake.f2.RData |binary qtl-1.40-8/qtl/data/hyper.RData |binary qtl-1.40-8/qtl/data/listeria.RData |binary qtl-1.40-8/qtl/data/locations.RData |binary qtl-1.40-8/qtl/data/map10.RData |binary qtl-1.40-8/qtl/data/mapthis.RData |binary qtl-1.40-8/qtl/data/multitrait.RData |binary qtl-1.40-8/qtl/inst/INSTALL_ME.txt | 22 +++++----- qtl-1.40-8/qtl/inst/README.md | 8 +-- qtl-1.40-8/qtl/inst/STATUS.txt | 28 +++++++++++++ qtl-1.40-8/qtl/inst/TODO.txt | 4 + qtl-1.40-8/qtl/inst/doc/bcsft.pdf |binary qtl-1.40-8/qtl/inst/doc/rqtltour.pdf |binary qtl-1.40-8/qtl/man/a.starting.point.Rd | 32 +++++++-------- qtl-1.40-8/qtl/man/listeria.Rd | 17 +++----- qtl-1.40-8/qtl/man/plot.pxg.Rd | 3 - qtl-1.40-8/qtl/src/mqmmapqtl.cpp | 2 qtl-1.40-8/qtl/src/mqmmixture.cpp | 2 qtl-1.40-8/qtl/src/mqmprob.cpp | 2 qtl-1.40-8/qtl/src/mqmregression.cpp | 1 qtl-1.40-8/qtl/src/mqmscan.cpp | 2 37 files changed, 144 insertions(+), 94 deletions(-)