Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation (ODE) models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual.
Author: Melissa Hallow [aut], Wenping Wang [aut, cre]
Maintainer: Wenping Wang <wwang8198@gmail.com>
Diff between RxODE versions 0.5-1 dated 2015-10-21 and 0.5-5 dated 2016-11-13
DESCRIPTION | 22 MD5 | 655 +++--- NAMESPACE | 34 R/RxODE.R | 737 +++--- R/eventTable.R | 366 +-- R/genShinyApp.template.R | 403 +-- demo/00Index | 2 demo/demo1.R | 116 - inst/Changes.txt | 178 - inst/Install-windows.Rmd | 166 - inst/Porting | 56 inst/THANKS | 36 inst/TODO.txt | 96 inst/common/call_dvode.c | 6 inst/doc/RxODE-intro.Rmd | 371 +-- inst/doc/RxODE-intro.html | 692 ++---- inst/doc/RxODE-syntax.Rmd | 295 +- inst/doc/RxODE-syntax.html | 540 ++--- inst/doc/index.html |only inst/driver_parsetree_no_inp.c |only inst/pkpd.g |only inst/tran.c |only inst/tran.g | 124 - man/RxODE.Rd | 582 ++--- man/eventTable.Rd | 286 +- man/genShinyApp.template.Rd | 148 - man/rx.initCmpMgr.Rd | 160 - src/Makefile | 4 src/Makefile.win | 52 src/dparser/4calc.g | 60 src/dparser/4calc.in | 4 src/dparser/CHANGES | 314 +- src/dparser/COPYRIGHT | 18 src/dparser/D_BUILD_VERSION | 2 src/dparser/Makefile.new |only src/dparser/Makefile.org | 440 ++-- src/dparser/README | 32 src/dparser/arg.c | 32 src/dparser/baseline | 14 src/dparser/faq.html | 124 - src/dparser/grammar.g | 422 +-- src/dparser/index.html | 248 +- src/dparser/make_dparser.1 | 234 +- src/dparser/make_dparser.cat | 228 +- src/dparser/manual.html | 1638 +++++++-------- src/dparser/my.g | 12 src/dparser/orig-Makefile | 440 ++-- src/dparser/parser_tests | 90 src/dparser/python/README | 34 src/dparser/python/contrib/dparserpy-syntax_error.py | 68 src/dparser/python/contrib/dparserpy.el | 206 - src/dparser/python/dparser.i | 48 src/dparser/python/dparser.py | 626 ++--- src/dparser/python/dparser_swigc.py | 444 ++-- src/dparser/python/index.html | 118 - src/dparser/python/py_dparser_manual.html | 294 +- src/dparser/python/setup.py | 58 src/dparser/python/tests/test.py | 48 src/dparser/python/tests/test2.py | 88 src/dparser/python/tests/test3.py | 56 src/dparser/python/tests/test4.py | 50 src/dparser/python/tests/test5.py | 38 src/dparser/python/tests/test6.py | 56 src/dparser/python/tests/test7.py | 72 src/dparser/sample.g | 334 +-- src/dparser/tests/ansic.test.g.1 | 6 src/dparser/tests/ansic.test.g.1.check | 6 src/dparser/tests/ansic.test.g.2.check | 4 src/dparser/tests/bnf.g | 98 src/dparser/tests/g1.test.g | 12 src/dparser/tests/g1.test.g.1 | 2 src/dparser/tests/g1.test.g.1.check | 12 src/dparser/tests/g10.test.g | 4 src/dparser/tests/g10.test.g.1 | 2 src/dparser/tests/g10.test.g.1.check | 4 src/dparser/tests/g11.test.g | 8 src/dparser/tests/g11.test.g.1 | 2 src/dparser/tests/g11.test.g.1.check | 4 src/dparser/tests/g11.test.g.2 | 2 src/dparser/tests/g11.test.g.2.check | 4 src/dparser/tests/g11.test.g.3 | 2 src/dparser/tests/g11.test.g.3.check | 4 src/dparser/tests/g12.test.g | 2 src/dparser/tests/g12.test.g.1 | 2 src/dparser/tests/g12.test.g.1.check | 4 src/dparser/tests/g13.test.g | 2 src/dparser/tests/g13.test.g.1 | 2 src/dparser/tests/g13.test.g.1.check | 4 src/dparser/tests/g14.test.g | 2 src/dparser/tests/g14.test.g.1 | 2 src/dparser/tests/g14.test.g.1.check | 4 src/dparser/tests/g15.test.g | 6 src/dparser/tests/g15.test.g.1 | 2 src/dparser/tests/g15.test.g.1.check | 4 src/dparser/tests/g16.test.g | 8 src/dparser/tests/g16.test.g.1 | 2 src/dparser/tests/g16.test.g.1.check | 10 src/dparser/tests/g17.test.g | 12 src/dparser/tests/g17.test.g.1 | 2 src/dparser/tests/g17.test.g.1.check | 14 src/dparser/tests/g18.test.g | 10 src/dparser/tests/g18.test.g.1 | 2 src/dparser/tests/g18.test.g.1.check | 14 src/dparser/tests/g19.test.g | 14 src/dparser/tests/g19.test.g.1 | 2 src/dparser/tests/g19.test.g.1.check | 14 src/dparser/tests/g2.test.g | 4 src/dparser/tests/g2.test.g.1 | 2 src/dparser/tests/g2.test.g.1.check | 4 src/dparser/tests/g20.test.g | 12 src/dparser/tests/g20.test.g.1 | 2 src/dparser/tests/g20.test.g.1.check | 14 src/dparser/tests/g21.test.g | 8 src/dparser/tests/g21.test.g.1 | 2 src/dparser/tests/g21.test.g.1.check | 4 src/dparser/tests/g22.test.g | 8 src/dparser/tests/g22.test.g.1 | 2 src/dparser/tests/g22.test.g.1.check | 4 src/dparser/tests/g23.test.g | 4 src/dparser/tests/g23.test.g.1 | 2 src/dparser/tests/g23.test.g.1.check | 4 src/dparser/tests/g24.test.g | 38 src/dparser/tests/g24.test.g.1 | 10 src/dparser/tests/g24.test.g.1.check | 4 src/dparser/tests/g25.test.g | 22 src/dparser/tests/g25.test.g.1 | 4 src/dparser/tests/g25.test.g.1.check | 8 src/dparser/tests/g26.test.g | 12 src/dparser/tests/g26.test.g.1 | 2 src/dparser/tests/g26.test.g.1.check | 8 src/dparser/tests/g27.test.g | 24 src/dparser/tests/g27.test.g.1 | 6 src/dparser/tests/g27.test.g.1.check | 10 src/dparser/tests/g28.test.g | 104 src/dparser/tests/g28.test.g.1 | 14 src/dparser/tests/g28.test.g.1.check | 14 src/dparser/tests/g28.test.g.2 | 38 src/dparser/tests/g28.test.g.2.check | 30 src/dparser/tests/g29.test.g | 108 - 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src/dparser/tests/python.test.g.1.check | 100 src/dparser/tests/sample.test.g | 334 +-- src/dparser/tests/sample.test.g.0 | 2 src/dparser/tests/sample.test.g.0.check | 8 src/dparser/tests/sample.test.g.1 | 2 src/dparser/tests/sample.test.g.1.check | 4 src/dparser/tests/sample.test.g.10 | 2 src/dparser/tests/sample.test.g.10.check | 4 src/dparser/tests/sample.test.g.11 | 2 src/dparser/tests/sample.test.g.11.check | 4 src/dparser/tests/sample.test.g.12 | 2 src/dparser/tests/sample.test.g.12.check | 4 src/dparser/tests/sample.test.g.13 | 2 src/dparser/tests/sample.test.g.13.check | 12 src/dparser/tests/sample.test.g.14 | 2 src/dparser/tests/sample.test.g.14.check | 4 src/dparser/tests/sample.test.g.15 | 2 src/dparser/tests/sample.test.g.15.check | 4 src/dparser/tests/sample.test.g.16 | 2 src/dparser/tests/sample.test.g.16.check | 4 src/dparser/tests/sample.test.g.17 | 2 src/dparser/tests/sample.test.g.17.check | 4 src/dparser/tests/sample.test.g.18 | 2 src/dparser/tests/sample.test.g.18.check | 8 src/dparser/tests/sample.test.g.19 | 2 src/dparser/tests/sample.test.g.19.check | 14 src/dparser/tests/sample.test.g.2 | 2 src/dparser/tests/sample.test.g.2.check | 4 src/dparser/tests/sample.test.g.20 | 2 src/dparser/tests/sample.test.g.20.check | 14 src/dparser/tests/sample.test.g.21 | 2 src/dparser/tests/sample.test.g.21.check | 6 src/dparser/tests/sample.test.g.22 | 222 +- src/dparser/tests/sample.test.g.22.check | 2008 +++++++++---------- src/dparser/tests/sample.test.g.23 | 2 src/dparser/tests/sample.test.g.23.check | 6 src/dparser/tests/sample.test.g.24 | 2 src/dparser/tests/sample.test.g.24.check | 18 src/dparser/tests/sample.test.g.25 | 2 src/dparser/tests/sample.test.g.25.check | 10 src/dparser/tests/sample.test.g.26 | 2 src/dparser/tests/sample.test.g.26.check | 18 src/dparser/tests/sample.test.g.27 | 2 src/dparser/tests/sample.test.g.27.check | 12 src/dparser/tests/sample.test.g.28 | 2 src/dparser/tests/sample.test.g.28.check | 12 src/dparser/tests/sample.test.g.29 | 2 src/dparser/tests/sample.test.g.29.check | 10 src/dparser/tests/sample.test.g.3 | 2 src/dparser/tests/sample.test.g.3.check | 4 src/dparser/tests/sample.test.g.30 | 2 src/dparser/tests/sample.test.g.30.check | 8 src/dparser/tests/sample.test.g.31 | 2 src/dparser/tests/sample.test.g.31.check | 4 src/dparser/tests/sample.test.g.32 | 2 src/dparser/tests/sample.test.g.32.check | 4 src/dparser/tests/sample.test.g.33 | 2 src/dparser/tests/sample.test.g.33.check | 8 src/dparser/tests/sample.test.g.4 | 2 src/dparser/tests/sample.test.g.4.check | 4 src/dparser/tests/sample.test.g.5 | 2 src/dparser/tests/sample.test.g.5.check | 4 src/dparser/tests/sample.test.g.6 | 2 src/dparser/tests/sample.test.g.6.check | 4 src/dparser/tests/sample.test.g.7 | 2 src/dparser/tests/sample.test.g.7.check | 4 src/dparser/tests/sample.test.g.8 | 2 src/dparser/tests/sample.test.g.8.check | 4 src/dparser/tests/sample.test.g.9 | 2 src/dparser/tests/sample.test.g.9.check | 4 src/dparser/tests/utf8.test.g | 16 src/dparser/tests/utf8.test.g.1 | 2 src/dparser/tests/utf8.test.g.1.check | 4 src/dparser/verilog/README | 58 src/dparser/verilog/verilog.g | 1066 +++++----- src/dparser/verilog/verilog_tests | 20 src/install.libs.R | 62 src/ode/Makefile | 4 src/ode/dlsoda.f | 56 src/ode/opkda1_abbr.f | 229 +- src/ode/vode.f | 286 ++ tests/Examples/RxODE.Rout.save | 116 - tests/Examples/eventTable.Rout.save | 66 tests/test-basic.R | 48 tests/test-multi.R | 202 - tests/test-parsing.R | 200 - tests/test3.1.R | 72 tests/test3.2.R | 76 vignettes/RxODE-intro.Rmd | 371 +-- vignettes/RxODE-intro.html |only vignettes/RxODE-syntax.Rmd | 295 +- vignettes/RxODE-syntax.html |only 332 files changed, 11431 insertions(+), 11331 deletions(-)
Title: Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
Description: Provides tools for importing and working with bibliographic
references. It greatly enhances the 'bibentry' class by providing a class
'BibEntry' which stores 'BibTeX' and 'BibLaTeX' references, supports 'UTF-8'
encoding, and can be easily searched by any field, by date ranges, and by
various formats for name lists (author by last names, translator by full names,
etc.). Entries can be updated, combined, sorted, printed in a number of styles,
and exported. 'BibTeX' and 'BibLaTeX' '.bib' files can be read into 'R' and
converted to 'BibEntry' objects. Interfaces to 'NCBI Entrez', 'CrossRef', and
'Zotero' are provided for importing references and references can be created
from locally stored 'PDF' files using 'Poppler'. Includes functions for citing
and generating a bibliography with hyperlinks for documents prepared with
'RMarkdown' or 'RHTML'.
Author: Mathew W. McLean [aut, cre]
Maintainer: Mathew W. McLean <mathew.w.mclean@gmail.com>
Diff between RefManageR versions 0.13.0 dated 2016-11-10 and 0.13.1 dated 2016-11-13
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 3 ++- R/04InternalFunctions.R | 4 ++-- R/format.R | 2 +- inst/doc/manual.pdf |binary 6 files changed, 14 insertions(+), 13 deletions(-)
Title: Enhanced Quantitative Trading Modelling
Description: Download and organize historical market data from multiple sources
like Yahoo (<https://finance.yahoo.com>), Google (<https://www.google.com/
finance>), Finam (<https://www.finam.ru/profile/moex-akcii/sberbank/export/>)
and IQFeed (<https://www.iqfeed.net/symbolguide/index.cfm?symbolguide=lookup>).
Code your trading algorithms in modern C++11 with powerful event driven tick
processing API including trading costs and exchange communication latency and
transform detailed data seamlessly into R. In just few lines of code you will
be able to visualize every step of your trading model from tick data to multi
dimensional heat maps.
Author: Stanislav Kovalevsky
Maintainer: Stanislav Kovalevsky <so.kovalevsky@gmail.com>
Diff between QuantTools versions 0.5.0 dated 2016-10-13 and 0.5.1 dated 2016-11-13
DESCRIPTION | 18 MD5 | 24 NAMESPACE | 3 R/get_market_data.R | 686 +++++++++--------- R/iqfeed.R | 479 +++++++++---- R/plot_ts.R | 610 ++++++++-------- R/round_POSIXct.R | 37 - R/to_ticks.R |only inst/include/BackTest/Processor.h | 1393 +++++++++++++++++++------------------- man/get_market_data.Rd | 6 man/iqfeed.Rd | 467 ++++++++---- man/plot_ts.Rd | 2 man/round_POSIXct.Rd | 16 man/to_ticks.Rd |only 14 files changed, 2088 insertions(+), 1653 deletions(-)
Title: Periodogram Peaks in Correlated Time Series
Description: Calculates the periodogram of a time series, maximum-likelihood fits an Ornstein-Uhlenbeck state space (OUSS) null model and evaluates the statistical significance of periodogram peaks against the OUSS null hypothesis. The OUSS is a parsimonious model for stochastically fluctuating variables with linear stabilizing forces, subject to uncorrelated measurement errors. Contrary to the classical white noise null model for detecting cyclicity, the OUSS model can account for temporal correlations typically occurring in ecological and geological time series.
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca@zoology.ubc.ca>
Diff between peacots versions 1.2 dated 2015-06-13 and 1.3 dated 2016-11-13
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 4 ++++ R/plotReport.R | 2 +- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Dynamic Model Averaging with Grid Search
Description: Perform Dynamic Model Averaging with grid search as in Dangl and Halling (2012) <doi:10.1016/j.jfineco.2012.06.005> using parallel computing.
Author: Leopoldo Catania & Nima Nonejad
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>
Diff between eDMA versions 1.1 dated 2016-11-12 and 1.2 dated 2016-11-13
DESCRIPTION | 10 - MD5 | 16 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/eDMA_1.1.pdf |binary man/eDMA-package.Rd | 4 src/Estimate.cpp | 365 -------------------------------------------------- src/Estimate.h |only src/Estimate_par.cpp |only src/Utils.cpp | 4 10 files changed, 21 insertions(+), 378 deletions(-)
Title: Exploratory and Descriptive Event-Based Data Analysis
Description: Functions for exploratory and descriptive analysis of event based
data. Can be used to import and export Xes-files, the IEEE eXtensible Event
Stream standard (see <http://standards.ieee.org/findstds/standard/1849-2016.html> for more info). Provides methods for describing and selecting process data,
and for preparing event log data for process mining.
Author: Gert Janssenswillen
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between edeaR versions 0.4.4 dated 2016-09-21 and 0.4.7 dated 2016-11-13
edeaR-0.4.4/edeaR/R/activity_specialization.R |only edeaR-0.4.4/edeaR/R/activity_specialization_activity.R |only edeaR-0.4.4/edeaR/R/activity_specialization_case.R |only edeaR-0.4.4/edeaR/R/repetitions.R |only edeaR-0.4.4/edeaR/R/resource_specialization.R |only edeaR-0.4.4/edeaR/R/resource_specialization_case.R |only edeaR-0.4.4/edeaR/R/resource_specialization_log.R |only edeaR-0.4.4/edeaR/R/resource_specialization_resource.R |only edeaR-0.4.4/edeaR/inst/doc/descriptives.R |only edeaR-0.4.4/edeaR/inst/doc/descriptives.Rmd |only edeaR-0.4.4/edeaR/inst/doc/descriptives.html |only edeaR-0.4.4/edeaR/inst/doc/potential.R |only edeaR-0.4.4/edeaR/inst/doc/potential.Rmd |only edeaR-0.4.4/edeaR/inst/doc/potential.html |only edeaR-0.4.4/edeaR/man/activity_specialization.Rd |only edeaR-0.4.4/edeaR/man/activity_type_frequency.Rd |only edeaR-0.4.4/edeaR/man/repetitions.Rd |only edeaR-0.4.4/edeaR/man/resource_specialization.Rd |only edeaR-0.4.4/edeaR/vignettes/descriptives.Rmd |only edeaR-0.4.4/edeaR/vignettes/potential.Rmd |only edeaR-0.4.7/edeaR/DESCRIPTION | 12 - edeaR-0.4.7/edeaR/MD5 | 117 +++++++------- edeaR-0.4.7/edeaR/NAMESPACE | 11 - edeaR-0.4.7/edeaR/R/activity_presence.R | 12 - edeaR-0.4.7/edeaR/R/activity_type_frequence.R | 18 -- edeaR-0.4.7/edeaR/R/activity_type_frequence_case.R | 23 -- edeaR-0.4.7/edeaR/R/activity_type_frequency_activity.R | 18 -- edeaR-0.4.7/edeaR/R/activity_type_frequency_log.R |only edeaR-0.4.7/edeaR/R/activity_type_frequency_trace.R | 36 ---- edeaR-0.4.7/edeaR/R/edeaR.R | 5 edeaR-0.4.7/edeaR/R/end_activities_activity.R | 22 +- edeaR-0.4.7/edeaR/R/end_activities_case.R | 12 - edeaR-0.4.7/edeaR/R/end_activities_log.R | 7 edeaR-0.4.7/edeaR/R/end_activities_resource.R | 22 +- edeaR-0.4.7/edeaR/R/end_activities_resource_activity.R | 21 -- edeaR-0.4.7/edeaR/R/filter_activity_presence.R |only edeaR-0.4.7/edeaR/R/filter_endpoints_sets.R | 4 edeaR-0.4.7/edeaR/R/number_of_repetitions.R |only edeaR-0.4.7/edeaR/R/number_of_selfloops.R | 40 +++- edeaR-0.4.7/edeaR/R/redo_repetitions_referral_matrix.R |only edeaR-0.4.7/edeaR/R/redo_selfloops_referral_matrix.R |only edeaR-0.4.7/edeaR/R/repeat_selfloop.R |only edeaR-0.4.7/edeaR/R/resource_frequency_activity.R | 4 edeaR-0.4.7/edeaR/R/resource_frequency_case.R | 4 edeaR-0.4.7/edeaR/R/resource_involvement.R | 6 edeaR-0.4.7/edeaR/R/resource_involvement_case.R |only edeaR-0.4.7/edeaR/R/resource_specialisation.R |only edeaR-0.4.7/edeaR/R/resource_specialisation_activity.R |only edeaR-0.4.7/edeaR/R/resource_specialisation_case.R |only edeaR-0.4.7/edeaR/R/resource_specialisation_log.R |only edeaR-0.4.7/edeaR/R/resource_specialisation_resource.R |only edeaR-0.4.7/edeaR/R/rework_functions.R |only edeaR-0.4.7/edeaR/R/size_of_repetitions.R |only edeaR-0.4.7/edeaR/R/size_of_selfloops.R | 42 +++-- edeaR-0.4.7/edeaR/R/start_activities_activity.R | 22 +- edeaR-0.4.7/edeaR/R/start_activities_case.R | 12 - edeaR-0.4.7/edeaR/R/start_activities_log.R | 9 - edeaR-0.4.7/edeaR/R/start_activities_resource.R | 23 +- edeaR-0.4.7/edeaR/R/start_activities_resource_activity.R | 22 -- edeaR-0.4.7/edeaR/R/summary.eventlog.R | 2 edeaR-0.4.7/edeaR/R/throughput_time_case.R | 20 +- edeaR-0.4.7/edeaR/R/trace_coverage_case.R | 10 - edeaR-0.4.7/edeaR/R/trace_coverage_trace.R | 10 - edeaR-0.4.7/edeaR/R/trace_length_case.R | 9 - edeaR-0.4.7/edeaR/R/trace_length_log.R | 8 edeaR-0.4.7/edeaR/R/trace_length_trace.R | 79 +++++---- edeaR-0.4.7/edeaR/R/traces.R | 2 edeaR-0.4.7/edeaR/R/traces_light.R | 40 +++- edeaR-0.4.7/edeaR/build/vignette.rds |binary edeaR-0.4.7/edeaR/inst/doc/selection.html | 24 +- edeaR-0.4.7/edeaR/man/activity_frequency.Rd |only edeaR-0.4.7/edeaR/man/activity_presence.Rd | 3 edeaR-0.4.7/edeaR/man/filter_activity_presence.Rd |only edeaR-0.4.7/edeaR/man/number_of_repetitions.Rd |only edeaR-0.4.7/edeaR/man/number_of_selfloops.Rd | 6 edeaR-0.4.7/edeaR/man/redo_repetitions_referral_matrix.Rd |only edeaR-0.4.7/edeaR/man/redo_selfloops_referral_matrix.Rd |only edeaR-0.4.7/edeaR/man/resource_specialisation.Rd |only edeaR-0.4.7/edeaR/man/size_of_repetitions.Rd |only edeaR-0.4.7/edeaR/man/size_of_selfloops.Rd | 8 80 files changed, 367 insertions(+), 378 deletions(-)
Title: Data Transformation and Labelled Data Utility Functions
Description: Collection of miscellaneous utility functions (especially intended
for people coming from other statistical software packages like 'SPSS', and/
or who are new to R), supporting following common tasks when working with
data : 1) Reading and writing data between R and other statistical software
packages like 'SPSS', 'SAS' or 'Stata' and working with labelled data; this
includes easy ways to get and set label attributes, to convert labelled
vectors into factors (and vice versa), or to deal with multiple declared
missing values etc. 2) Data transformation tasks like recoding,
dichotomizing or grouping variables, setting and replacing missing values.
The data transformation functions also support labelled data.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjmisc versions 2.0.1 dated 2016-10-31 and 2.1.0 dated 2016-11-13
sjmisc-2.0.1/sjmisc/man/zap_unlabelled.Rd |only sjmisc-2.1.0/sjmisc/DESCRIPTION | 13 - sjmisc-2.1.0/sjmisc/MD5 | 52 ++--- sjmisc-2.1.0/sjmisc/NAMESPACE | 26 -- sjmisc-2.1.0/sjmisc/NEWS | 270 ++++++++++++++------------- sjmisc-2.1.0/sjmisc/NEWS.md | 117 ++++++----- sjmisc-2.1.0/sjmisc/R/find_var.R |only sjmisc-2.1.0/sjmisc/R/get_label.R | 9 sjmisc-2.1.0/sjmisc/R/merge_df.R | 2 sjmisc-2.1.0/sjmisc/R/str_pos.R | 4 sjmisc-2.1.0/sjmisc/R/to_dummy.R | 70 +++++-- sjmisc-2.1.0/sjmisc/R/to_factor.R | 47 +++- sjmisc-2.1.0/sjmisc/R/to_label.R | 95 ++++++--- sjmisc-2.1.0/sjmisc/R/to_value.R | 295 ++++++++++++++++-------------- sjmisc-2.1.0/sjmisc/R/var_labels.R |only sjmisc-2.1.0/sjmisc/R/zap_labels.R | 181 +++++++++--------- sjmisc-2.1.0/sjmisc/build/partial.rdb |binary sjmisc-2.1.0/sjmisc/man/count_na.Rd | 70 +++---- sjmisc-2.1.0/sjmisc/man/find_var.Rd |only sjmisc-2.1.0/sjmisc/man/get_label.Rd | 9 sjmisc-2.1.0/sjmisc/man/sjmisc-package.Rd | 4 sjmisc-2.1.0/sjmisc/man/to_character.Rd | 11 + sjmisc-2.1.0/sjmisc/man/to_dummy.Rd | 23 +- sjmisc-2.1.0/sjmisc/man/to_factor.Rd | 13 + sjmisc-2.1.0/sjmisc/man/to_label.Rd | 13 + sjmisc-2.1.0/sjmisc/man/to_value.Rd | 22 +- sjmisc-2.1.0/sjmisc/man/var_labels.Rd |only sjmisc-2.1.0/sjmisc/man/var_rename.Rd |only sjmisc-2.1.0/sjmisc/man/zap_labels.Rd | 28 ++ sjmisc-2.1.0/sjmisc/man/zap_na_tags.Rd | 10 - 30 files changed, 800 insertions(+), 584 deletions(-)
Title: Create Simple Packages Which Do not Upset R Package Checks
Description: Provides a function kitten() which creates cute little
packages which pass R package checks. This sets it apart from
package.skeleton() which it calls, and which leaves imperfect files
behind. As this is not exactly helpful for beginners, kitten() offers
an alternative.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between pkgKitten versions 0.1.3 dated 2015-06-13 and 0.1.4 dated 2016-11-13
ChangeLog | 14 ++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + R/pkgKitten.R | 2 +- README.md | 15 ++++++++++++--- inst/NEWS.Rd | 14 +++++++++++--- inst/replacements/manual-page-stub.Rd | 23 +++++++++++------------ 8 files changed, 61 insertions(+), 30 deletions(-)
Title: Qualitative Comparative Analysis GUI
Description: This is an obsolete version of the package QCAGUI, which is now merged with package QCA.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between QCAGUI versions 2.4 dated 2016-07-07 and 2.5 dated 2016-11-13
QCAGUI-2.4/QCAGUI/R/XYplot.R |only QCAGUI-2.4/QCAGUI/R/allExpressions.R |only QCAGUI-2.4/QCAGUI/R/calibrate.R |only QCAGUI-2.4/QCAGUI/R/compute.R |only QCAGUI-2.4/QCAGUI/R/createMatrix.R |only QCAGUI-2.4/QCAGUI/R/deMorgan.R |only QCAGUI-2.4/QCAGUI/R/eqmcc.R |only QCAGUI-2.4/QCAGUI/R/eqmccLoop.R |only QCAGUI-2.4/QCAGUI/R/export.R |only QCAGUI-2.4/QCAGUI/R/factorize.R |only QCAGUI-2.4/QCAGUI/R/findRows.R |only QCAGUI-2.4/QCAGUI/R/findSubsets.R |only QCAGUI-2.4/QCAGUI/R/findSupersets.R |only QCAGUI-2.4/QCAGUI/R/findTh.R |only QCAGUI-2.4/QCAGUI/R/fuzzyand.R |only QCAGUI-2.4/QCAGUI/R/fuzzyor.R |only QCAGUI-2.4/QCAGUI/R/getRow.R |only QCAGUI-2.4/QCAGUI/R/intersection.R |only QCAGUI-2.4/QCAGUI/R/is.print.R |only QCAGUI-2.4/QCAGUI/R/makeChart.R |only QCAGUI-2.4/QCAGUI/R/onAttach.R |only QCAGUI-2.4/QCAGUI/R/pof.R |only QCAGUI-2.4/QCAGUI/R/prettyTable.R |only QCAGUI-2.4/QCAGUI/R/recode.R |only QCAGUI-2.4/QCAGUI/R/retention.R |only QCAGUI-2.4/QCAGUI/R/runGUI.R |only QCAGUI-2.4/QCAGUI/R/solveChart.R |only QCAGUI-2.4/QCAGUI/R/superSubset.R |only QCAGUI-2.4/QCAGUI/R/superSubsetOld.R |only QCAGUI-2.4/QCAGUI/R/translate.R |only QCAGUI-2.4/QCAGUI/R/truthTable.R |only QCAGUI-2.4/QCAGUI/R/uninstall.R |only QCAGUI-2.4/QCAGUI/R/verifyQCA.R |only QCAGUI-2.4/QCAGUI/README.md |only QCAGUI-2.4/QCAGUI/data |only QCAGUI-2.4/QCAGUI/inst |only QCAGUI-2.4/QCAGUI/man/CV.Rd |only QCAGUI-2.4/QCAGUI/man/LegacyDatasets.Rd |only QCAGUI-2.4/QCAGUI/man/Lipset.Rd |only QCAGUI-2.4/QCAGUI/man/QCAGUI-internal.Rd |only QCAGUI-2.4/QCAGUI/man/RS.Rd |only QCAGUI-2.4/QCAGUI/man/SOPexpression.Rd |only QCAGUI-2.4/QCAGUI/man/XYplot.Rd |only QCAGUI-2.4/QCAGUI/man/calibrate.Rd |only QCAGUI-2.4/QCAGUI/man/chartFunctions.Rd |only QCAGUI-2.4/QCAGUI/man/deMorgan.Rd |only QCAGUI-2.4/QCAGUI/man/eqmcc.Rd |only QCAGUI-2.4/QCAGUI/man/export.Rd |only QCAGUI-2.4/QCAGUI/man/factorize.Rd |only QCAGUI-2.4/QCAGUI/man/findTh.Rd |only QCAGUI-2.4/QCAGUI/man/fuzzyops.Rd |only QCAGUI-2.4/QCAGUI/man/implicantMatrixFunctions.Rd |only QCAGUI-2.4/QCAGUI/man/intersection.Rd |only QCAGUI-2.4/QCAGUI/man/pof.Rd |only QCAGUI-2.4/QCAGUI/man/recode.Rd |only QCAGUI-2.4/QCAGUI/man/retention.Rd |only QCAGUI-2.4/QCAGUI/man/runGUI.Rd |only QCAGUI-2.4/QCAGUI/man/subsetsAndSupersets.Rd |only QCAGUI-2.4/QCAGUI/man/truthTable.Rd |only QCAGUI-2.5/QCAGUI/DESCRIPTION | 49 +---- QCAGUI-2.5/QCAGUI/MD5 | 213 ---------------------- QCAGUI-2.5/QCAGUI/NAMESPACE | 69 ------- QCAGUI-2.5/QCAGUI/R/dummyFunction.R |only QCAGUI-2.5/QCAGUI/man/QCAGUI.package.Rd | 117 +----------- QCAGUI-2.5/QCAGUI/man/dummyFunction.Rd |only 65 files changed, 31 insertions(+), 417 deletions(-)
Title: Open Source OCR Engine
Description: An OCR engine with unicode (UTF-8) support that can recognize
over 100 languages out of the box.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between tesseract versions 1.1 dated 2016-11-10 and 1.2 dated 2016-11-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ configure | 12 +++++++++--- 4 files changed, 18 insertions(+), 9 deletions(-)
Title: Simulation of Diffusion Processes
Description: Provides the functions for simulating and modeling of stochastic differential equations (SDE's). Statistical analysis and simulation of the solution of SDE's enabled many searchers in different domains to use these equations to modeling practical problems, in financial and actuarial modeling and other areas of application. For example, modeling and simulate of dispersion in shallow water using the attractive center (Boukhetala K, 1996).
Author: Arsalane Chouaib Guidoum [cre, aut],
Kamal Boukhetala [aut]
Maintainer: Arsalane Chouaib Guidoum <acguidoum@usthb.dz>
Diff between Sim.DiffProc versions 3.5 dated 2016-11-10 and 3.6 dated 2016-11-13
Sim.DiffProc-3.5/Sim.DiffProc/vignettes/setup.r |only Sim.DiffProc-3.6/Sim.DiffProc/DESCRIPTION | 10 Sim.DiffProc-3.6/Sim.DiffProc/MD5 | 33 Sim.DiffProc-3.6/Sim.DiffProc/NEWS | 3 Sim.DiffProc-3.6/Sim.DiffProc/inst/doc/Sim.DiffProc.html | 13 Sim.DiffProc-3.6/Sim.DiffProc/inst/doc/fitsde.R | 10 Sim.DiffProc-3.6/Sim.DiffProc/inst/doc/fitsde.Rmd | 12 Sim.DiffProc-3.6/Sim.DiffProc/inst/doc/fitsde.html | 98 Sim.DiffProc-3.6/Sim.DiffProc/inst/doc/fptsde.R | 4 Sim.DiffProc-3.6/Sim.DiffProc/inst/doc/fptsde.Rmd | 4 Sim.DiffProc-3.6/Sim.DiffProc/inst/doc/fptsde.html | 142 Sim.DiffProc-3.6/Sim.DiffProc/inst/doc/sde.R | 13 Sim.DiffProc-3.6/Sim.DiffProc/inst/doc/sde.Rmd | 13 Sim.DiffProc-3.6/Sim.DiffProc/inst/doc/sde.html | 3246 -------------- Sim.DiffProc-3.6/Sim.DiffProc/man/Sim.DiffProc-package.Rd | 6 Sim.DiffProc-3.6/Sim.DiffProc/vignettes/fitsde.Rmd | 12 Sim.DiffProc-3.6/Sim.DiffProc/vignettes/fptsde.Rmd | 4 Sim.DiffProc-3.6/Sim.DiffProc/vignettes/sde.Rmd | 13 18 files changed, 333 insertions(+), 3303 deletions(-)
Title: Empirical Bayes Estimation and Inference in R
Description: Kiefer-Wolfowitz maximum likelihood estimation for mixture models
and some other density estimation and regression methods based on convex
optimization.
Author: Roger Koenker [aut, cre],
Jiaying Gu [ctb],
Ivan Mizera [ctb]
Maintainer: Roger Koenker <rkoenker@uiuc.edu>
Diff between REBayes versions 0.68 dated 2016-10-19 and 0.73 dated 2016-11-13
DESCRIPTION | 8 ++-- MD5 | 30 ++++++++++++----- R/Guvenen.R |only R/medde.R | 85 ++++++++++++++++++++++++++++++-------------------- R/velo.R |only build/vignette.rds |binary data/Guvenen.rda |only data/velo.rda |only demo/00Index | 1 demo/velo.R |only inst/ChangeLog | 8 ++++ inst/doc/medde.R |only inst/doc/medde.Rnw |only inst/doc/medde.pdf |only inst/doc/rebayes.pdf |binary man/Guvenen.Rd |only man/medde.Rd | 69 ++++++++++++++++++++++------------------ man/qmedde.Rd | 1 man/velo.Rd |only vignettes/medde.Rnw |only vignettes/medde.bib |only vignettes/rebayes.bib | 4 +- 22 files changed, 126 insertions(+), 80 deletions(-)
Title: Extension to 'ggplot2'
Description:
The R package 'ggplot2' is a plotting system based on the grammar of graphics.
'GGally' extends 'ggplot2' by adding several functions
to reduce the complexity of combining geometric objects with transformed data.
Some of these functions include a pairwise plot matrix, a two group pairwise plot
matrix, a parallel coordinates plot, a survival plot, and several functions to
plot networks.
Author: Barret Schloerke [aut, cre] (author for ggpairs, ggduo, ggnostic, ggts,
ggfacet, and ggally_*. Contributor for all functions.),
Jason Crowley [aut] (ggparcoord),
Di Cook [aut, ths] (ggscatmat, gglyph),
Heike Hofmann [ths],
Hadley Wickham [ths],
Francois Briatte [aut] (ggcorr, ggnet, ggnet2),
Moritz Marbach [aut] (ggnet, ggnet2),
Edwin Thoen [aut] (ggsurv),
Amos Elberg [aut] (ggnetworkmap),
Joseph Larmarange [aut] (ggcoef)
Maintainer: Barret Schloerke <schloerke@gmail.com>
Diff between GGally versions 1.2.0 dated 2016-07-01 and 1.3.0 dated 2016-11-13
GGally-1.2.0/GGally/NEWS |only GGally-1.2.0/GGally/inst/doc/ggcoef.Rmd |only GGally-1.2.0/GGally/inst/doc/gglyph.Rmd |only GGally-1.2.0/GGally/inst/doc/ggmatrix.Rmd |only GGally-1.2.0/GGally/inst/doc/ggnetworkmap.Rmd |only GGally-1.2.0/GGally/inst/doc/ggpairs.Rmd |only GGally-1.2.0/GGally/inst/doc/ggscatmat.Rmd |only GGally-1.2.0/GGally/inst/doc/ggsurv.Rmd |only GGally-1.2.0/GGally/man/first_non_null.Rd |only GGally-1.2.0/GGally/man/get_theme_element.Rd |only GGally-1.2.0/GGally/man/ggally_dotAndBox.Rd |only GGally-1.2.0/GGally/man/ggfluctuation2.Rd |only GGally-1.2.0/GGally/man/vplayout.Rd |only GGally-1.2.0/GGally/vignettes/ggcoef.Rmd |only GGally-1.2.0/GGally/vignettes/gglyph.Rmd |only GGally-1.2.0/GGally/vignettes/ggmatrix.Rmd |only GGally-1.2.0/GGally/vignettes/ggnetworkmap.Rmd |only GGally-1.2.0/GGally/vignettes/ggpairs.Rmd |only GGally-1.2.0/GGally/vignettes/ggscatmat.Rmd |only GGally-1.2.0/GGally/vignettes/ggsurv.Rmd |only GGally-1.3.0/GGally/DESCRIPTION | 34 - GGally-1.3.0/GGally/MD5 | 167 +++-- GGally-1.3.0/GGally/NAMESPACE | 32 - GGally-1.3.0/GGally/NEWS.md |only GGally-1.3.0/GGally/R/data-pigs.R |only GGally-1.3.0/GGally/R/find-combo.R | 4 GGally-1.3.0/GGally/R/gg-plots.R | 516 +++++----------- GGally-1.3.0/GGally/R/ggcoef.R | 15 GGally-1.3.0/GGally/R/ggcorr.R | 9 GGally-1.3.0/GGally/R/ggfacet.R |only GGally-1.3.0/GGally/R/ggmatrix.R | 43 - GGally-1.3.0/GGally/R/ggmatrix_gtable.R |only GGally-1.3.0/GGally/R/ggmatrix_gtable_helpers.R |only GGally-1.3.0/GGally/R/ggmatrix_make_plot.R | 159 +---- GGally-1.3.0/GGally/R/ggmatrix_print.R | 522 +---------------- GGally-1.3.0/GGally/R/ggnet.R | 42 - GGally-1.3.0/GGally/R/ggnet2.R | 92 +- GGally-1.3.0/GGally/R/ggnetworkmap.R | 119 ++- GGally-1.3.0/GGally/R/ggnostic.R |only GGally-1.3.0/GGally/R/ggpairs.R | 315 +++++++--- GGally-1.3.0/GGally/R/ggpairs_add.R | 55 + GGally-1.3.0/GGally/R/ggpairs_getput.R | 22 GGally-1.3.0/GGally/R/ggpairs_internal_plots.R | 65 +- GGally-1.3.0/GGally/R/ggparcoord.R | 50 - GGally-1.3.0/GGally/R/ggsave.R |only GGally-1.3.0/GGally/R/ggscatmat.R | 32 - GGally-1.3.0/GGally/R/ggsurv.R | 38 - GGally-1.3.0/GGally/R/utils.R | 18 GGally-1.3.0/GGally/README.md | 6 GGally-1.3.0/GGally/build/vignette.rds |binary GGally-1.3.0/GGally/data/pigs.rda |only GGally-1.3.0/GGally/inst/doc/docs.Rmd |only GGally-1.3.0/GGally/inst/doc/docs.html |only GGally-1.3.0/GGally/inst/doc/ggcoef.html | 56 - GGally-1.3.0/GGally/inst/doc/ggduo.html |only GGally-1.3.0/GGally/inst/doc/gglyph.html | 55 - GGally-1.3.0/GGally/inst/doc/ggmatrix.html | 55 - GGally-1.3.0/GGally/inst/doc/ggnetworkmap.html | 56 - GGally-1.3.0/GGally/inst/doc/ggpairs.html | 55 - GGally-1.3.0/GGally/inst/doc/ggscatmat.html | 55 - GGally-1.3.0/GGally/inst/doc/ggsurv.html | 55 - GGally-1.3.0/GGally/inst/doc/rd.Rmd |only GGally-1.3.0/GGally/inst/doc/rd.html |only GGally-1.3.0/GGally/man/brew_colors.Rd |only GGally-1.3.0/GGally/man/broomify.Rd |only GGally-1.3.0/GGally/man/fn_switch.Rd |only GGally-1.3.0/GGally/man/ggally_box.Rd | 5 GGally-1.3.0/GGally/man/ggally_dot.Rd | 5 GGally-1.3.0/GGally/man/ggally_dot_and_box.Rd |only GGally-1.3.0/GGally/man/ggally_nostic_cooksd.Rd |only GGally-1.3.0/GGally/man/ggally_nostic_hat.Rd |only GGally-1.3.0/GGally/man/ggally_nostic_line.Rd |only GGally-1.3.0/GGally/man/ggally_nostic_resid.Rd |only GGally-1.3.0/GGally/man/ggally_nostic_se_fit.Rd |only GGally-1.3.0/GGally/man/ggally_nostic_sigma.Rd |only GGally-1.3.0/GGally/man/ggally_nostic_std_resid.Rd |only GGally-1.3.0/GGally/man/ggcoef.Rd | 15 GGally-1.3.0/GGally/man/ggcorr.Rd | 2 GGally-1.3.0/GGally/man/ggduo.Rd | 39 - 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