Title: '--omics' Data Analysis Toolbox
Description: A collection of functions to analyse '--omics' datasets such as DNA
methylation and gene expression profiles.
Author: Gianluca Campanella [aut, cre]
Maintainer: Gianluca Campanella <gianluca@campanella.org>
Diff between omics versions 0.1-4 dated 2016-02-11 and 0.1-5 dated 2016-11-27
omics-0.1-4/omics/tests/testthat/test-models.R |only omics-0.1-5/omics/DESCRIPTION | 8 ++++---- omics-0.1-5/omics/MD5 | 11 ++++++----- omics-0.1-5/omics/R/mlm.R | 2 +- omics-0.1-5/omics/R/mlmer.R | 12 ++++++------ omics-0.1-5/omics/inst/NEWS.Rd | 6 ++++++ omics-0.1-5/omics/tests/testthat/test-mlm.R |only omics-0.1-5/omics/tests/testthat/test-mlmer.R |only 8 files changed, 23 insertions(+), 16 deletions(-)
Title: Anything to 'POSIXct' or 'Date' Converter
Description: Convert input in any one of character, integer, numeric, factor,
or ordered type into 'POSIXct' (or 'Date') objects, using one of a number of
predefined formats, and relying on Boost facilities for date and time parsing.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between anytime versions 0.1.0 dated 2016-11-07 and 0.1.1 dated 2016-11-27
ChangeLog | 26 ++++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- R/anytime.R | 14 +++++++------- R/init.R | 4 ++-- README.md | 3 ++- build/partial.rdb |binary inst/NEWS.Rd | 12 ++++++++++++ src/anytime.cpp | 24 ++++++++++++++---------- tests/allFormats.R | 7 +++++++ tests/utilities.R |only 11 files changed, 84 insertions(+), 33 deletions(-)
Title: 'SQLite' Interface for R
Description: Embeds the 'SQLite' database engine in R and
provides an interface compliant with the 'DBI' package. The
source for the 'SQLite' engine (version 3.8.8.2) is included.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
SQLite Authors [ctb] (for the included SQLite sources),
Liam Healy [ctb] (for the included SQLite sources),
R Consortium [cph],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RSQLite versions 1.0.0 dated 2014-10-24 and 1.1 dated 2016-11-27
RSQLite-1.0.0/RSQLite/R/Connect.R |only RSQLite-1.0.0/RSQLite/R/Connection.R |only RSQLite-1.0.0/RSQLite/R/ConnectionExtensions.R |only RSQLite-1.0.0/RSQLite/R/ConnectionRead.R |only RSQLite-1.0.0/RSQLite/R/ConnectionTransactions.R |only RSQLite-1.0.0/RSQLite/R/ConnectionWrite.R |only RSQLite-1.0.0/RSQLite/R/Constants.R |only RSQLite-1.0.0/RSQLite/R/Driver.R |only RSQLite-1.0.0/RSQLite/R/Escaping.R |only RSQLite-1.0.0/RSQLite/R/Object.R |only RSQLite-1.0.0/RSQLite/R/Result.R |only RSQLite-1.0.0/RSQLite/R/Summary.R |only RSQLite-1.0.0/RSQLite/R/Utils.R |only RSQLite-1.0.0/RSQLite/R/dbGetInfo.R |only RSQLite-1.0.0/RSQLite/configure |only RSQLite-1.0.0/RSQLite/configure.in |only RSQLite-1.0.0/RSQLite/inst/include |only RSQLite-1.0.0/RSQLite/man/dbConnect-SQLiteDriver-method.Rd |only RSQLite-1.0.0/RSQLite/man/dbDataType-SQLiteConnection-method.Rd |only RSQLite-1.0.0/RSQLite/man/dbGetException-SQLiteConnection-method.Rd |only RSQLite-1.0.0/RSQLite/man/dbIsValid.Rd |only RSQLite-1.0.0/RSQLite/man/dbListTables-SQLiteConnection-method.Rd |only RSQLite-1.0.0/RSQLite/man/dbSendPreparedQuery.Rd |only RSQLite-1.0.0/RSQLite/man/dbUnloadDriver-SQLiteDriver-method.Rd |only RSQLite-1.0.0/RSQLite/man/query.Rd |only RSQLite-1.0.0/RSQLite/man/summary.Rd |only RSQLite-1.0.0/RSQLite/man/transactions.Rd |only RSQLite-1.0.0/RSQLite/src/Makevars.in |only RSQLite-1.0.0/RSQLite/src/Makevars.win |only RSQLite-1.0.0/RSQLite/src/connection.c |only RSQLite-1.0.0/RSQLite/src/driver.c |only RSQLite-1.0.0/RSQLite/src/exceptions.c |only RSQLite-1.0.0/RSQLite/src/extension-functions.c |only RSQLite-1.0.0/RSQLite/src/fetch.c |only RSQLite-1.0.0/RSQLite/src/fields.c |only RSQLite-1.0.0/RSQLite/src/importFile.c |only RSQLite-1.0.0/RSQLite/src/param_binding.c |only RSQLite-1.0.0/RSQLite/src/quick_column.c |only RSQLite-1.0.0/RSQLite/src/result.c |only RSQLite-1.0.0/RSQLite/src/rsqlite.h |only RSQLite-1.0.0/RSQLite/src/sqlite |only RSQLite-1.0.0/RSQLite/src/sqlite-all.c |only RSQLite-1.0.0/RSQLite/src/sqlite-all.o-68d98681 |only RSQLite-1.0.0/RSQLite/src/sqlite.h |only RSQLite-1.0.0/RSQLite/src/test-dbDisconnect.R |only RSQLite-1.0.0/RSQLite/src/utils.c |only RSQLite-1.1/RSQLite/DESCRIPTION | 61 +- RSQLite-1.1/RSQLite/MD5 | 177 +++--- RSQLite-1.1/RSQLite/NAMESPACE | 30 - RSQLite-1.1/RSQLite/NEWS.md |only RSQLite-1.1/RSQLite/R/RcppExports.R |only RSQLite-1.1/RSQLite/R/SQLiteConnection.R |only RSQLite-1.1/RSQLite/R/SQLiteDriver.R |only RSQLite-1.1/RSQLite/R/SQLiteResult.R |only RSQLite-1.1/RSQLite/R/connect.R |only RSQLite-1.1/RSQLite/R/copy.R |only RSQLite-1.1/RSQLite/R/datasetsDb.R | 18 RSQLite-1.1/RSQLite/R/deprecated.R |only RSQLite-1.1/RSQLite/R/dummy.R |only RSQLite-1.1/RSQLite/R/extensions.R | 29 - RSQLite-1.1/RSQLite/R/query.R |only RSQLite-1.1/RSQLite/R/rownames.R |only RSQLite-1.1/RSQLite/R/table.R |only RSQLite-1.1/RSQLite/R/transactions.R |only RSQLite-1.1/RSQLite/R/utils.R |only RSQLite-1.1/RSQLite/README.md | 125 +++- RSQLite-1.1/RSQLite/build |only RSQLite-1.1/RSQLite/inst/doc |only RSQLite-1.1/RSQLite/man/SQLite.Rd |only RSQLite-1.1/RSQLite/man/SQLiteConnection-class.Rd | 22 RSQLite-1.1/RSQLite/man/SQLiteDriver-class.Rd | 62 -- RSQLite-1.1/RSQLite/man/SQLiteResult-class.Rd | 10 RSQLite-1.1/RSQLite/man/datasetsDb.Rd | 8 RSQLite-1.1/RSQLite/man/dbBeginTransaction.Rd | 7 RSQLite-1.1/RSQLite/man/dbDataType-SQLiteDriver-method.Rd |only RSQLite-1.1/RSQLite/man/dbExistsTable-SQLiteConnection-character-method.Rd | 28 - RSQLite-1.1/RSQLite/man/dbGetInfo.Rd | 32 - RSQLite-1.1/RSQLite/man/dbListFields-SQLiteConnection-character-method.Rd | 22 RSQLite-1.1/RSQLite/man/dbListResults-SQLiteConnection-method.Rd |only RSQLite-1.1/RSQLite/man/dbReadTable-SQLiteConnection-character-method.Rd | 62 +- RSQLite-1.1/RSQLite/man/dbRemoveTable-SQLiteConnection-character-method.Rd | 21 RSQLite-1.1/RSQLite/man/dbWriteTable.Rd | 58 +- RSQLite-1.1/RSQLite/man/dummy-methods.Rd |only RSQLite-1.1/RSQLite/man/fetch-SQLiteResult-method.Rd |only RSQLite-1.1/RSQLite/man/initExtension.Rd | 22 RSQLite-1.1/RSQLite/man/isIdCurrent.Rd |only RSQLite-1.1/RSQLite/man/make.db.names-SQLiteConnection-character-method.Rd | 47 - RSQLite-1.1/RSQLite/man/query-dep.Rd |only RSQLite-1.1/RSQLite/man/reexports.Rd |only RSQLite-1.1/RSQLite/man/rsqliteVersion.Rd |only RSQLite-1.1/RSQLite/man/sqlite-meta.Rd | 53 + RSQLite-1.1/RSQLite/man/sqlite-query.Rd |only RSQLite-1.1/RSQLite/man/sqlite-transaction.Rd |only RSQLite-1.1/RSQLite/man/sqliteBuildTableDefinition.Rd | 9 RSQLite-1.1/RSQLite/man/sqliteCopyDatabase.Rd | 59 -- RSQLite-1.1/RSQLite/man/sqliteQuickColumn.Rd | 31 - RSQLite-1.1/RSQLite/src/Makevars |only RSQLite-1.1/RSQLite/src/RSQLite.h |only RSQLite-1.1/RSQLite/src/RSQLite_types.h |only RSQLite-1.1/RSQLite/src/RcppExports.cpp |only RSQLite-1.1/RSQLite/src/SqliteConnection.cpp |only RSQLite-1.1/RSQLite/src/SqliteConnection.h |only RSQLite-1.1/RSQLite/src/SqliteDataFrame.cpp |only RSQLite-1.1/RSQLite/src/SqliteDataFrame.h |only RSQLite-1.1/RSQLite/src/SqliteResult.cpp |only RSQLite-1.1/RSQLite/src/SqliteResult.h |only RSQLite-1.1/RSQLite/src/SqliteResultImpl.cpp |only RSQLite-1.1/RSQLite/src/SqliteResultImpl.h |only RSQLite-1.1/RSQLite/src/SqliteUtils.h |only RSQLite-1.1/RSQLite/src/affinity.c |only RSQLite-1.1/RSQLite/src/affinity.h |only RSQLite-1.1/RSQLite/src/connection.cpp |only RSQLite-1.1/RSQLite/src/import-file.c |only RSQLite-1.1/RSQLite/src/result.cpp |only RSQLite-1.1/RSQLite/src/rsqlite.cpp |only RSQLite-1.1/RSQLite/src/sqlite3 |only RSQLite-1.1/RSQLite/src/sqlite3.h |only RSQLite-1.1/RSQLite/src/workarounds |only RSQLite-1.1/RSQLite/tests/testthat/helper-DBItest.R |only RSQLite-1.1/RSQLite/tests/testthat/helper-astyle.R |only RSQLite-1.1/RSQLite/tests/testthat/helper-memdb.R |only RSQLite-1.1/RSQLite/tests/testthat/helper-tibble.R |only RSQLite-1.1/RSQLite/tests/testthat/test-DBItest.R |only RSQLite-1.1/RSQLite/tests/testthat/test-affinity.R |only RSQLite-1.1/RSQLite/tests/testthat/test-astyle.R |only RSQLite-1.1/RSQLite/tests/testthat/test-basic-types.R | 25 RSQLite-1.1/RSQLite/tests/testthat/test-data-type.R | 23 RSQLite-1.1/RSQLite/tests/testthat/test-dbClearResult.R | 14 RSQLite-1.1/RSQLite/tests/testthat/test-dbConnect.R | 39 - RSQLite-1.1/RSQLite/tests/testthat/test-dbSendQuery.R | 106 ++- RSQLite-1.1/RSQLite/tests/testthat/test-dbWriteTable.R | 273 ++++++++-- RSQLite-1.1/RSQLite/tests/testthat/test-dbWriteTableAutoincrement.R |only RSQLite-1.1/RSQLite/tests/testthat/test-error.R |only RSQLite-1.1/RSQLite/tests/testthat/test-exception.R |only RSQLite-1.1/RSQLite/tests/testthat/test-field-types.R |only RSQLite-1.1/RSQLite/tests/testthat/test-json.R |only RSQLite-1.1/RSQLite/tests/testthat/test-sqliteCopyDatabase.R | 38 - RSQLite-1.1/RSQLite/tests/testthat/test-sqliteQuickColumn.R | 8 RSQLite-1.1/RSQLite/tests/testthat/test-transactions.R |only RSQLite-1.1/RSQLite/vignettes |only 140 files changed, 921 insertions(+), 598 deletions(-)
Title: Read and Write ODS Files
Description: Import ODS (OpenDocument Spreadsheet) into R as a data frame. Also support writing data frame into ODS file.
Author: Gerrit-Jan Schutten, Chung-hong Chan, Thomas J. Leeper
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between readODS versions 1.6.2 dated 2016-03-09 and 1.6.4 dated 2016-11-27
readODS-1.6.2/readODS/man/read.ods.Rd |only readODS-1.6.4/readODS/DESCRIPTION | 18 +++---- readODS-1.6.4/readODS/MD5 | 22 +++++++-- readODS-1.6.4/readODS/NAMESPACE | 8 +++ readODS-1.6.4/readODS/R/readODS.R | 35 +++++---------- readODS-1.6.4/readODS/R/writeODS.R |only readODS-1.6.4/readODS/inst |only readODS-1.6.4/readODS/man/read_ods.Rd | 20 ++++++-- readODS-1.6.4/readODS/man/write_ods.Rd |only readODS-1.6.4/readODS/tests/testdata/col_types.ods |only readODS-1.6.4/readODS/tests/testdata/multiline_cells.ods |only readODS-1.6.4/readODS/tests/testthat/test.ods |only readODS-1.6.4/readODS/tests/testthat/test_col_types.R |only readODS-1.6.4/readODS/tests/testthat/test_multiline.R |only readODS-1.6.4/readODS/tests/testthat/test_write_ods.R |only 15 files changed, 61 insertions(+), 42 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: Functions to accompany A. Gelman and J. Hill, Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.
Author: Andrew Gelman [aut],
Yu-Sung Su [aut, cre],
Masanao Yajima [ctb],
Jennifer Hill [ctb],
Maria Grazia Pittau [ctb],
Jouni Kerman [ctb],
Tian Zheng [ctb],
Vincent Dorie [ctb]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>
Diff between arm versions 1.9-1 dated 2016-08-24 and 1.9-3 dated 2016-11-27
CHANGELOG | 12 ++++++++++++ DESCRIPTION | 22 +++++++++++++--------- MD5 | 6 +++--- data/lalonde.rda |binary 4 files changed, 28 insertions(+), 12 deletions(-)
Title: Analytic Hierarchy Process
Description: Model and analyse complex decision making problems
using the Analytic Hierarchy Process (AHP) by Thomas Saaty.
Author: Christoph Glur
Maintainer: Christoph Glur <christoph.glur@ipub.com>
Diff between ahp versions 0.2.8 dated 2016-02-09 and 0.2.10 dated 2016-11-27
ahp-0.2.10/ahp/DESCRIPTION | 8 ahp-0.2.10/ahp/MD5 | 88 ahp-0.2.10/ahp/NAMESPACE | 56 ahp-0.2.10/ahp/NEWS | 101 ahp-0.2.10/ahp/R/ahp.package.R | 87 ahp-0.2.10/ahp/R/ahp_functions.R | 190 ahp-0.2.10/ahp/R/analyze.R | 246 ahp-0.2.10/ahp/R/calculate.R | 500 - ahp-0.2.10/ahp/R/gui.R | 18 ahp-0.2.10/ahp/R/load.R | 310 - ahp-0.2.10/ahp/R/table.R | 284 ahp-0.2.10/ahp/R/visualize.R | 216 ahp-0.2.10/ahp/build/vignette.rds |binary ahp-0.2.10/ahp/inst/doc/examples.R | 150 ahp-0.2.10/ahp/inst/doc/examples.Rmd | 801 +- ahp-0.2.10/ahp/inst/doc/examples.html | 3015 +++++----- ahp-0.2.10/ahp/inst/doc/file-format.R | 72 ahp-0.2.10/ahp/inst/doc/file-format.Rmd | 1037 +-- ahp-0.2.10/ahp/inst/doc/file-format.html | 1115 +-- ahp-0.2.10/ahp/inst/extdata/car.ahp | 498 - ahp-0.2.10/ahp/inst/extdata/tom_dick_harry.ahp | 164 ahp-0.2.10/ahp/inst/extdata/vacation.ahp | 144 ahp-0.2.10/ahp/inst/gui/shiny/about.html |only ahp-0.2.10/ahp/inst/gui/shiny/about.md | 40 ahp-0.2.10/ahp/inst/gui/shiny/help.md | 102 ahp-0.2.10/ahp/inst/gui/shiny/server.R | 544 - ahp-0.2.10/ahp/inst/gui/shiny/ui.R | 191 ahp-0.2.10/ahp/man/AhpMatrix.Rd | 42 ahp-0.2.10/ahp/man/Analyze.Rd | 172 ahp-0.2.10/ahp/man/Calculate.Rd | 42 ahp-0.2.10/ahp/man/GetPairwiseFromFunction.Rd | 30 ahp-0.2.10/ahp/man/Load.Rd | 90 ahp-0.2.10/ahp/man/PrioritiesFromPairwiseMatrixEigenvalues.Rd | 56 ahp-0.2.10/ahp/man/PrioritiesFromScoresDefault.Rd | 40 ahp-0.2.10/ahp/man/RunGUI.Rd | 24 ahp-0.2.10/ahp/man/Visualize.Rd | 78 ahp-0.2.10/ahp/man/ahp.Rd | 101 ahp-0.2.10/ahp/tests/testthat.R | 6 ahp-0.2.10/ahp/tests/testthat/test-Analyze.R | 138 ahp-0.2.10/ahp/tests/testthat/test-Calculate.R | 72 ahp-0.2.10/ahp/tests/testthat/test-Load.R | 130 ahp-0.2.10/ahp/tests/testthat/test-Visualize.R | 36 ahp-0.2.10/ahp/tests/testthat/test-ahpBasics.R | 110 ahp-0.2.10/ahp/vignettes/examples.Rmd | 801 +- ahp-0.2.10/ahp/vignettes/file-format.Rmd | 1037 +-- ahp-0.2.8/ahp/README.md |only 46 files changed, 6780 insertions(+), 6202 deletions(-)
Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data.
Several methods are based on the use of a spatial weighting matrix and its
eigenvector decomposition (Moran's Eigenvectors Maps, MEM).
Author: Stéphane Dray, Guillaume Blanchet, Daniel Borcard, Guillaume Guenard,
Thibaut Jombart, Guillaume Larocque, Pierre Legendre, Helene H Wagner
Maintainer: Stéphane Dray <stephane.dray@univ-lyon1.fr>
Diff between adespatial versions 0.0-4 dated 2016-09-12 and 0.0-6 dated 2016-11-27
DESCRIPTION | 11 MD5 | 62 +-- NAMESPACE | 10 R/LCBD.comp.R | 111 +++--- R/beta.div.R | 883 +++++++++++++------------------------------------ R/beta.div.comp.R | 6 R/dist.ldc.R |only R/forward.sel.par.R | 6 R/give.thresh.R | 2 R/globloc.rtests.R | 34 - R/mfpa.R | 222 ++++++------ R/msr.R | 21 - R/ortho.AIC.R | 26 - R/orthobasis.poly.R | 2 R/scalogram.R | 4 R/scores.listw.R | 40 +- R/stimodels.R |only R/test.W.R | 5 R/trichoptera.R |only data |only man/LCBD.comp.Rd | 77 ++-- man/beta.div.Rd | 233 ++++++------ man/beta.div.comp.Rd | 6 man/dist.ldc.Rd |only man/forward.sel.par.Rd | 6 man/give.thresh.Rd | 2 man/global.rtest.Rd | 30 - man/mem.Rd | 17 man/mfpa.Rd | 222 ++++++------ man/msr.Rd | 21 - man/ortho.AIC.Rd | 26 - man/orthobasis.poly.Rd | 2 man/scalogram.Rd | 2 man/stimodels.Rd |only man/trichoptera.Rd |only src/betadiv.c |only 36 files changed, 881 insertions(+), 1208 deletions(-)