Title: Optimal Transport in Various Forms
Description: Solve optimal transport problems. Compute Wasserstein metrics (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p metrics), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, (weighted) point patterns, and mass vectors.
Author: Dominic Schuhmacher [aut, cre],
Björn Bähre [aut] (aha and power diagrams),
Carsten Gottschlich [aut] (simplex und shortlist),
Florian Heinemann [aut] (transport_track),
Timo Wilm [ctb] (wpp)
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between transport versions 0.7-3 dated 2016-02-24 and 0.8-1 dated 2016-12-07
DESCRIPTION | 26 ++- MD5 | 44 ++--- NAMESPACE | 26 ++- NEWS | 160 ++++++++++++++++++ R/aha.R | 52 +++--- R/fundament.R | 391 ++++++++++++++++++++++++++++++++++++++-------- R/lilhelpers.R | 295 +++++++++++++++++++++++++++++++++- R/transporttrack.R |only data/random32.rda |binary data/random64.rda |binary inst |only man/aha.Rd | 14 + man/all.equal.Rd | 6 man/compatible.Rd | 2 man/methods.Rd | 11 - man/plot.Rd | 45 +++-- man/power_diagram.Rd | 12 - man/pp.Rd | 2 man/semidiscrete.Rd |only man/transport-internal.Rd | 10 + man/transport-package.Rd | 8 man/transport.Rd | 56 +++++- man/transport_track.Rd |only man/wpp-object.Rd |only man/wpp.Rd |only src/revsimplex.c | 8 26 files changed, 990 insertions(+), 178 deletions(-)
Title: Marine Regions Data from 'Marineregions.org'
Description: Tools to get marine regions data from <http://
www.marineregions.org/>. Includes tools to get region metadata, as well as
data in 'GeoJSON' format, as well as Shape files. Use cases include using
data downstream to visualize 'geospatial' data by marine region, mapping
variation among different regions, and more.
Author: Scott Chamberlain [aut, cre],
Francois Michonneau [ctb],
Pieter Provoost [ctb],
Michael Sumner [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between mregions versions 0.1.0 dated 2016-08-03 and 0.1.4 dated 2016-12-07
DESCRIPTION | 16 +-- MD5 | 68 ++++++++------- NAMESPACE | 3 NEWS.md | 26 +++++- R/as_wkt.R | 41 +++++---- R/mr_features_get.R |only R/mr_layers.R |only R/mr_names2.R |only R/mregions-package.R | 20 ++-- R/obis_eez_id.R | 11 +- R/records_by_type.R | 12 +- R/region_geojson.R | 10 -- R/region_names.R | 74 +++++++++++++---- R/region_names_search.R | 44 ++++++---- R/region_shp.R | 88 +++++++++++++++++--- R/zzz.R | 32 ++++++- README.md | 26 ++---- build/vignette.rds |binary inst/doc/mregions.Rmd | 133 +++++++++++-------------------- inst/doc/mregions.html | 137 ++++++++++++-------------------- inst/ignore |only inst/vign/figure/complex.png |binary inst/vign/figure/simple.png |binary inst/vign/mregions.Rmd | 49 ++--------- inst/vign/mregions.md | 133 +++++++++++-------------------- man/mr_as_wkt.Rd | 31 +++---- man/mr_features_get.Rd |only man/mr_geojson.Rd | 10 -- man/mr_layers.Rd |only man/mr_names.Rd | 44 ++++------ man/mr_names_search.Rd | 13 +-- man/mr_obis_eez_id.Rd | 8 - man/mr_records_by_type.Rd | 8 - man/mr_shp.Rd | 61 ++++++++++++-- man/mregions-package.Rd | 20 ++-- tests/testthat/test-as_wkt_projection.R | 8 + tests/testthat/test-mr_layers.R |only tests/testthat/test-mr_names.R |only vignettes/mregions.Rmd | 133 +++++++++++-------------------- 39 files changed, 665 insertions(+), 594 deletions(-)
Title: Build Error Correction Models
Description: Functions for easy building of error correction models (ECM) for time series regression.
Author: Gaurav Bansal
Maintainer: Gaurav Bansal <gaurbans@gmail.com>
Diff between ecm versions 0.2.0 dated 2016-12-02 and 0.3.0 dated 2016-12-07
ecm-0.2.0/ecm/data/FedData.RData |only ecm-0.2.0/ecm/man/FedData.Rd |only ecm-0.3.0/ecm/DESCRIPTION | 6 +++--- ecm-0.3.0/ecm/MD5 | 20 ++++++++++---------- ecm-0.3.0/ecm/R/data.R | 18 +++++++++--------- ecm-0.3.0/ecm/R/ecm.R | 23 ++++++++++++----------- ecm-0.3.0/ecm/R/ecmback.r | 29 ++++++++++++++++------------- ecm-0.3.0/ecm/R/ecmpredict.r | 14 +++++++------- ecm-0.3.0/ecm/data/Wilshire.RData |only ecm-0.3.0/ecm/man/Wilshire.Rd |only ecm-0.3.0/ecm/man/ecm.Rd | 23 ++++++++++++----------- ecm-0.3.0/ecm/man/ecmback.Rd | 19 ++++++++++--------- ecm-0.3.0/ecm/man/ecmpredict.Rd | 14 +++++++------- 13 files changed, 86 insertions(+), 80 deletions(-)
Title: Bivariate Empirical Subcopula
Description: Calculate empirical subcopula and dependence measures from a given bivariate sample.
Author: Arturo Erdely
Maintainer: Arturo Erdely <arturo.erdely@comunidad.unam.mx>
Diff between subcopem2D versions 1.0-0 dated 2016-04-25 and 1.1 dated 2016-12-07
subcopem2D-1.0-0/subcopem2D/R/subcopem2D-internal.R |only subcopem2D-1.1/subcopem2D/DESCRIPTION | 8 +- subcopem2D-1.1/subcopem2D/MD5 | 15 ++-- subcopem2D-1.1/subcopem2D/NAMESPACE | 3 subcopem2D-1.1/subcopem2D/R/dependence.R |only subcopem2D-1.1/subcopem2D/R/subcopem.R | 65 ++++++++++--------- subcopem2D-1.1/subcopem2D/R/subcopemc.R | 67 ++++++++++---------- subcopem2D-1.1/subcopem2D/man/dependence.Rd |only subcopem2D-1.1/subcopem2D/man/subcopem.Rd | 27 +++++--- subcopem2D-1.1/subcopem2D/man/subcopemc.Rd | 28 +++++--- 10 files changed, 121 insertions(+), 92 deletions(-)
Title: Simulation of Study Data
Description: Simulates data sets in order to explore modeling techniques or
better understand data generating processes. The user specifies a set of
relationships between covariates, and generates data based on these
specifications. The final data sets can represent data from randomized
control trials, repeated measure (longitudinal) designs, and cluster
randomized trials. Missingness can be generated using various
mechanisms (MCAR, MAR, NMAR).
Author: Keith Goldfeld [aut, cre]
Maintainer: Keith Goldfeld <Keith.Goldfeld@nyumc.org>
Diff between simstudy versions 0.1.1 dated 2016-06-21 and 0.1.2 dated 2016-12-07
DESCRIPTION | 8 +-- MD5 | 100 ++++++++++++++++++++++++------------------------- NAMESPACE | 1 NEWS.md | 8 +++ R/RcppExports.R | 2 R/addColumns.R | 18 ++++++++ R/addCorData.R | 22 ++++++++++ R/addPeriods.R | 57 ++++++++++++++++++++++++++- R/defData.R | 23 +++++++++-- R/defDataAdd.R | 18 ++++++++ R/defMiss.R | 29 +++++++++++++- R/defRead.R | 40 +++++++++++++++++-- R/defReadAdd.R | 33 ++++++++++++++++ R/defSurv.R | 26 ++++++++++++ R/genCluster.R | 25 ++++++++++-- R/genCorData.R | 19 ++++++++- R/genData.R | 20 ++++++++- R/genMiss.R | 25 ++++++++++++ R/genObs.R | 29 +++++++++++++- R/genSurv.R | 30 +++++++++++++- R/int_genMissDataMat.R | 16 +++++-- R/int_gencat.R | 56 +++++++++++++++------------ R/int_generate.R | 4 - R/mergeData.R | 12 +++++ R/trtAssign.R | 27 +++++++++++++ R/trtObserve.R | 21 ++++++++++ build/vignette.rds |binary inst/doc/simstudy.R | 2 inst/doc/simstudy.Rmd | 2 inst/doc/simstudy.html | 77 +++++++++++++++++++++---------------- man/addColumns.Rd | 57 ++++++++++++++++++--------- man/addCorData.Rd | 23 +++++++++++ man/addPeriods.Rd | 31 ++++++++++++++- man/defData.Rd | 10 ++++ man/defDataAdd.Rd | 19 ++++++++- man/defMiss.Rd | 30 ++++++++++++++ man/defRead.Rd | 64 +++++++++++++++++++++---------- man/defReadAdd.Rd | 34 ++++++++++++++++ man/defSurv.Rd | 27 +++++++++++++ man/genCluster.Rd | 19 +++++++-- man/genCorData.Rd | 18 ++++++++ man/genData.Rd | 16 +++++++ man/genMiss.Rd | 28 +++++++++++++ man/genObs.Rd | 28 +++++++++++++ man/genSurv.Rd | 31 ++++++++++++++- man/mergeData.Rd | 57 +++++++++++++++++---------- man/trtAssign.Rd | 30 ++++++++++++++ man/trtObserve.Rd | 76 ++++++++++++++++++++++++------------- src/RcppExports.cpp | 18 ++++---- src/srcRcpp.cpp | 1 vignettes/simstudy.Rmd | 2 51 files changed, 1114 insertions(+), 255 deletions(-)
Title: Noncompartmental Analysis for Pharmacokinetic Data
Description: Conduct a noncompartmental analysis as closely as possible to the most widely used commercial software for pharmacokinetic analysis, i.e. 'Phoenix(R) WinNonlin(R)' <https://www.certara.com/software/pkpd-modeling-and-simulation/phoenix-winnonlin/>.
Some features include:
- Use CDISC SDTM PP domain terms.
- Automatic slope selection with the same criterion of WinNonlin(R)
- Support both 'linear-up linear-down' and 'linear-up log-down' method
- Calculate partial(interval) AUC with 'linear' or 'log' interpolation method
For more details on noncompartmental analysis, see the reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107)
Acknowldegement: Author thanks for the careful review and valuable input of Dr. Jee Eun Lee.
Author: Kyun-Seop Bae
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between NonCompart versions 0.2.3 dated 2016-11-27 and 0.2.4 dated 2016-12-07
NonCompart-0.2.3/NonCompart/man/NonCompart_0.2.3-package.Rd |only NonCompart-0.2.4/NonCompart/DESCRIPTION | 22 +++-- NonCompart-0.2.4/NonCompart/MD5 | 30 ++++---- NonCompart-0.2.4/NonCompart/NAMESPACE | 3 NonCompart-0.2.4/NonCompart/R/NCA.R | 23 +++++- NonCompart-0.2.4/NonCompart/inst/doc/NonCompart-manual.pdf |binary NonCompart-0.2.4/NonCompart/man/AUC.Rd | 12 +-- NonCompart-0.2.4/NonCompart/man/BestSlope.Rd | 21 ++--- NonCompart-0.2.4/NonCompart/man/IndiNCA.Rd | 45 ++++++------ NonCompart-0.2.4/NonCompart/man/IntAUC.Rd | 20 +++-- NonCompart-0.2.4/NonCompart/man/Interpol.Rd | 6 - NonCompart-0.2.4/NonCompart/man/LinAUC.Rd | 15 ++-- NonCompart-0.2.4/NonCompart/man/LogAUC.Rd | 15 ++-- NonCompart-0.2.4/NonCompart/man/NCA.Rd | 39 +++++----- NonCompart-0.2.4/NonCompart/man/NonCompart_0.2.4-package.Rd |only NonCompart-0.2.4/NonCompart/man/Round.Rd | 4 - NonCompart-0.2.4/NonCompart/man/Slope.Rd | 10 +- 17 files changed, 158 insertions(+), 107 deletions(-)
Title: Linked Micromap Plots for General U. S. and Other Geographic
Areas
Description: Provides the users with the ability to quickly create Linked
Micromap plots for a collection of geographic areas.
Linked Micromaps are visualizations of georeferenced data that link statistical
graphics to an organized series of small maps or graphic images.
The Help description contains examples of how to use the micromapST function.
Contained in this package are border group datasets to support creating micromaps for the
50 U.S. states and District of Columbia (51 areas), the U. S. 20 Seer Registries,
the 105 counties in the state of Kansas, the 62 counties of New York,
the 24 counties of Maryland, the 29 counties of Utah, the 32 administrative areas
in China, the 218 administrative areas in the UK and Ireland (for testing only),
the 25 districts in the city of Seoul South Korea, and the 52 counties on the Africa
continent.
A border group dataset contains the boundaries related to the data level areas,
a second layer boundaries, a top or third layer boundary, a parameter list of
run options, and a cross indexing table between area names, abbreviations,
numeric identification and alias matching strings for the specific geographic
area. By specifying a border group, the package create micromaps for any
geographic region. The user can create and provide their own border group dataset
for any area beyond the areas contained within the package.
Copyrighted 2013, 2014, 2015 and 2016 by Carr, Pearson and Pickle.
Author: Jim Pearson <jpearson@statnetconsulting.com> and Dan Carr <dcarr@gmu.edu>,
with contributions from Linda Pickle <linda@statnetconsulting.com>.
Maintainer: Jim Pearson <jpearson@statnetconsulting.com>
Diff between micromapST versions 1.1.0 dated 2016-12-06 and 1.1.1 dated 2016-12-07
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- R/micromapST.r | 45 +++++++++++++++++++++++++-------------------- man/micromapST-package.Rd | 4 ++-- 4 files changed, 36 insertions(+), 30 deletions(-)
Title: Import and Analysis of OMR Data from FormScanner
Description: Import data of tests and questionnaires from FormScanner. FormScanner is an open source software that converts scanned images to data using optical mark recognition (OMR) and it can be downloaded from <http://sourceforge.net/projects/formscanner/>. The spreadsheet file created by FormScanner is imported in a convenient format to perform the analyses provided by the package. These analyses include the conversion of multiple responses to binary (correct/incorrect) data, the computation of the number of corrected responses for each subject or item, scoring using weights,the computation and the graphical representation of the frequencies of the responses to each item and the report of the responses of a few persons.
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between fsia versions 1.0 dated 2015-01-13 and 1.1 dated 2016-12-07
fsia-1.0/fsia/data/exam1.rda |only fsia-1.0/fsia/data/mchoice1.rda |only fsia-1.0/fsia/data/mchoice1id.rda |only fsia-1.0/fsia/data/mchoice2.rda |only fsia-1.0/fsia/data/mchoice2id.rda |only fsia-1.0/fsia/man/exam1.Rd |only fsia-1.0/fsia/man/mchoice1.Rd |only fsia-1.0/fsia/man/mchoice1id.Rd |only fsia-1.0/fsia/man/mchoice2.Rd |only fsia-1.0/fsia/man/mchoice2id.Rd |only fsia-1.1/fsia/DESCRIPTION | 10 - fsia-1.1/fsia/MD5 | 53 +++++--- fsia-1.1/fsia/NAMESPACE | 7 - fsia-1.1/fsia/R/fsia.r | 195 +++++++++++++++++++++++++------- fsia-1.1/fsia/data/key.rda |binary fsia-1.1/fsia/data/questionnaire.rda |only fsia-1.1/fsia/data/test.rda |only fsia-1.1/fsia/data/weights.rda |only fsia-1.1/fsia/data/weights_multiple.rda |only fsia-1.1/fsia/inst |only fsia-1.1/fsia/man/addkey.Rd |only fsia-1.1/fsia/man/addweights.Rd |only fsia-1.1/fsia/man/freq.Rd | 21 ++- fsia-1.1/fsia/man/fsia-package.Rd | 147 +++++++++++++++--------- fsia-1.1/fsia/man/item.stat.Rd | 33 ++++- fsia-1.1/fsia/man/key.Rd | 6 fsia-1.1/fsia/man/person.stat.Rd | 38 ++++-- fsia-1.1/fsia/man/questionnaire.Rd |only fsia-1.1/fsia/man/read.formscanner.Rd | 132 +++------------------ fsia-1.1/fsia/man/report.Rd | 29 +++- fsia-1.1/fsia/man/resp2binary.Rd | 15 +- fsia-1.1/fsia/man/resp2scores.Rd |only fsia-1.1/fsia/man/test.Rd |only fsia-1.1/fsia/man/weights.Rd |only fsia-1.1/fsia/man/weights_multiple.Rd |only 35 files changed, 414 insertions(+), 272 deletions(-)
Title: Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
Description: Estimation of the components of an ETAS model for earthquake description. Non-parametric background seismicity can be estimated through FLP (Forward Likelihood Predictive), while parametric components are estimated through maximum likelihood. The two estimation steps are alternated until convergence is obtained. For each event the probability of being a background event is estimated and used as a weight for declustering steps. Many options to control the estimation process are present, together with some diagnostic tools. Some descriptive functions for earthquakes catalogs are present; also plot, print, summary, profile methods are defined for main output (objects of class 'etasclass').
Author: Marcello Chiodi [aut, cre],
Giada Adelfio [aut]
Maintainer: Marcello Chiodi <marcello.chiodi@unipa.it>
Diff between etasFLP versions 1.3.0 dated 2015-06-03 and 1.3.1 dated 2016-12-07
ChangeLog | 3 DESCRIPTION | 8 MD5 | 14 NAMESPACE | 6 data/californiacatalog.RData |binary data/italycatalog.RData |binary man/etasFLP-package.Rd | 4 src/fortran_etas_code.f90 | 702 +++++++++++++++++++++---------------------- 8 files changed, 379 insertions(+), 358 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from
National Water Information System (NWIS) tools. Both EPA and USGS water
quality data are obtained from the Water Quality Portal <https://www.waterqualitydata.us/>.
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre],
David Lorenz [aut],
Jordan Read [ctb],
Lindsay Carr [ctb],
David Watkins [aut]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between dataRetrieval versions 2.5.13 dated 2016-09-27 and 2.6.3 dated 2016-12-07
dataRetrieval-2.5.13/dataRetrieval/README.md |only dataRetrieval-2.6.3/dataRetrieval/.Rinstignore | 8 dataRetrieval-2.6.3/dataRetrieval/DESCRIPTION | 19 dataRetrieval-2.6.3/dataRetrieval/LICENSE.note | 34 dataRetrieval-2.6.3/dataRetrieval/MD5 | 165 dataRetrieval-2.6.3/dataRetrieval/NAMESPACE | 152 dataRetrieval-2.6.3/dataRetrieval/NEWS | 242 - dataRetrieval-2.6.3/dataRetrieval/R/AAA.R | 24 dataRetrieval-2.6.3/dataRetrieval/R/checkWQPdates.r | 102 dataRetrieval-2.6.3/dataRetrieval/R/constructNWISURL.r | 718 +-- dataRetrieval-2.6.3/dataRetrieval/R/getWebServiceData.R | 184 dataRetrieval-2.6.3/dataRetrieval/R/importRDB1.r | 654 +-- dataRetrieval-2.6.3/dataRetrieval/R/importWQP.R | 328 - dataRetrieval-2.6.3/dataRetrieval/R/importWaterML1.r | 690 +-- dataRetrieval-2.6.3/dataRetrieval/R/importWaterML2.r | 240 - dataRetrieval-2.6.3/dataRetrieval/R/readNWISdata.r | 658 +-- dataRetrieval-2.6.3/dataRetrieval/R/readNWISdv.r | 150 dataRetrieval-2.6.3/dataRetrieval/R/readNWISpCode.r | 136 dataRetrieval-2.6.3/dataRetrieval/R/readNWISqw.r | 392 +- dataRetrieval-2.6.3/dataRetrieval/R/readNWISsite.r | 160 dataRetrieval-2.6.3/dataRetrieval/R/readNWISunit.r | 1160 +++--- dataRetrieval-2.6.3/dataRetrieval/R/readWQPdata.R | 426 +- dataRetrieval-2.6.3/dataRetrieval/R/readWQPqw.r | 370 - dataRetrieval-2.6.3/dataRetrieval/R/renameColumns.R | 228 - dataRetrieval-2.6.3/dataRetrieval/R/setAccess.R | 152 dataRetrieval-2.6.3/dataRetrieval/R/tabbedDataRetrievals.R | 260 - dataRetrieval-2.6.3/dataRetrieval/R/whatNWISData.r | 246 - dataRetrieval-2.6.3/dataRetrieval/R/whatNWISsites.R | 168 dataRetrieval-2.6.3/dataRetrieval/R/whatWQPsites.R | 226 - dataRetrieval-2.6.3/dataRetrieval/R/zeroPad.r | 70 dataRetrieval-2.6.3/dataRetrieval/build/vignette.rds |binary dataRetrieval-2.6.3/dataRetrieval/inst/CITATION | 32 dataRetrieval-2.6.3/dataRetrieval/inst/doc/dataRetrieval.R | 644 +-- dataRetrieval-2.6.3/dataRetrieval/inst/doc/dataRetrieval.Rnw | 1920 +++++----- dataRetrieval-2.6.3/dataRetrieval/inst/doc/dataRetrieval.pdf |binary dataRetrieval-2.6.3/dataRetrieval/inst/extdata/RDB1Example.txt | 110 dataRetrieval-2.6.3/dataRetrieval/inst/extdata/WaterML1Example.xml | 2 dataRetrieval-2.6.3/dataRetrieval/inst/extdata/WaterML2Example.xml | 240 - dataRetrieval-2.6.3/dataRetrieval/inst/extdata/infoTest.csv | 4 dataRetrieval-2.6.3/dataRetrieval/man/checkWQPdates.Rd | 50 dataRetrieval-2.6.3/dataRetrieval/man/constructNWISURL.Rd | 158 dataRetrieval-2.6.3/dataRetrieval/man/constructUseURL.Rd | 56 dataRetrieval-2.6.3/dataRetrieval/man/constructWQPURL.Rd | 88 dataRetrieval-2.6.3/dataRetrieval/man/countyCd.Rd | 56 dataRetrieval-2.6.3/dataRetrieval/man/countyCdLookup.Rd | 52 dataRetrieval-2.6.3/dataRetrieval/man/dataRetrieval-package.Rd | 62 dataRetrieval-2.6.3/dataRetrieval/man/getQuerySummary.Rd | 30 dataRetrieval-2.6.3/dataRetrieval/man/getWebServiceData.Rd | 64 dataRetrieval-2.6.3/dataRetrieval/man/importRDB1.Rd | 184 dataRetrieval-2.6.3/dataRetrieval/man/importWQP.Rd | 90 dataRetrieval-2.6.3/dataRetrieval/man/importWaterML1.Rd | 220 - dataRetrieval-2.6.3/dataRetrieval/man/importWaterML2.Rd | 108 dataRetrieval-2.6.3/dataRetrieval/man/pCodeToName.Rd | 68 dataRetrieval-2.6.3/dataRetrieval/man/parameterCdFile.Rd | 58 dataRetrieval-2.6.3/dataRetrieval/man/readNWISdata.Rd | 236 - dataRetrieval-2.6.3/dataRetrieval/man/readNWISdv.Rd | 164 dataRetrieval-2.6.3/dataRetrieval/man/readNWISgwl.Rd | 146 dataRetrieval-2.6.3/dataRetrieval/man/readNWISmeas.Rd | 144 dataRetrieval-2.6.3/dataRetrieval/man/readNWISpCode.Rd | 84 dataRetrieval-2.6.3/dataRetrieval/man/readNWISpeak.Rd | 144 dataRetrieval-2.6.3/dataRetrieval/man/readNWISqw.Rd | 244 - dataRetrieval-2.6.3/dataRetrieval/man/readNWISrating.Rd | 114 dataRetrieval-2.6.3/dataRetrieval/man/readNWISsite.Rd | 164 dataRetrieval-2.6.3/dataRetrieval/man/readNWISstat.Rd | 154 dataRetrieval-2.6.3/dataRetrieval/man/readNWISuse.Rd | 124 dataRetrieval-2.6.3/dataRetrieval/man/readNWISuv.Rd | 180 dataRetrieval-2.6.3/dataRetrieval/man/readWQPdata.Rd | 238 - dataRetrieval-2.6.3/dataRetrieval/man/readWQPqw.Rd | 276 - dataRetrieval-2.6.3/dataRetrieval/man/renameNWISColumns.Rd | 164 dataRetrieval-2.6.3/dataRetrieval/man/setAccess.Rd | 70 dataRetrieval-2.6.3/dataRetrieval/man/stateCd.Rd | 54 dataRetrieval-2.6.3/dataRetrieval/man/stateCdLookup.Rd | 54 dataRetrieval-2.6.3/dataRetrieval/man/whatNWISdata.Rd | 170 dataRetrieval-2.6.3/dataRetrieval/man/whatNWISsites.Rd | 84 dataRetrieval-2.6.3/dataRetrieval/man/whatWQPsites.Rd | 150 dataRetrieval-2.6.3/dataRetrieval/man/zeroPad.Rd | 66 dataRetrieval-2.6.3/dataRetrieval/tests/testthat.R | 6 dataRetrieval-2.6.3/dataRetrieval/tests/testthat/rds |only dataRetrieval-2.6.3/dataRetrieval/tests/testthat/tests_general.R | 238 - dataRetrieval-2.6.3/dataRetrieval/tests/testthat/tests_imports.R | 372 - dataRetrieval-2.6.3/dataRetrieval/tests/testthat/tests_userFriendly_fxns.R | 435 +- dataRetrieval-2.6.3/dataRetrieval/vignettes/dataRetrieval.Rnw | 1920 +++++----- 82 files changed, 9434 insertions(+), 9419 deletions(-)
Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. It's called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identifying structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare, David Loris
Maintainer: Davide Altomare <davide.altomare@gmail.com>
Diff between ChannelAttribution versions 1.9 dated 2016-08-24 and 1.10 dated 2016-12-07
DESCRIPTION | 10 ++++---- MD5 | 6 ++--- man/ChannelAttribution-package.Rd | 8 +++--- src/ChannelAttribution.cpp | 44 +++++++++++++++++++++----------------- 4 files changed, 37 insertions(+), 31 deletions(-)
More information about ChannelAttribution at CRAN
Permanent link
Title: Access Data from the SeeClickFix Web API
Description: Provides a wrapper to access data from the SeeClickFix
web API for R. SeeClickFix is a central platform employed by many cities
that allows citizens to request their city's services. This package
creates several functions to work with all the built-in calls to the
SeeClickFix API. Allows users to download service request data from
numerous locations in easy-to-use dataframe format manipulable in
standard R functions.
Author: Justin de Benedictis-Kessner [aut, cre],
Christian Lemp [ctb]
Maintainer: Justin de Benedictis-Kessner <justindbk@gmail.com>
Diff between seeclickfixr versions 1.0.0 dated 2015-11-13 and 1.1.0 dated 2016-12-07
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/get_city_issues.R | 10 +++++++--- R/get_issues_by_date.R | 10 +++++++--- R/get_issues_by_type.R | 10 +++++++--- R/list_issue_types.R | 10 +++++++--- R/list_places.R | 10 +++++++--- man/get_issues_by_type.Rd | 4 +++- 8 files changed, 49 insertions(+), 27 deletions(-)
Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana, Joan Vila, Héctor Sanz, Gavin Lucas, Judith Peñafiel and David Giménez
Maintainer: Isaac Subirana <isubirana@imim.es>
Diff between compareGroups versions 3.2.1 dated 2016-05-13 and 3.2.2 dated 2016-12-07
DESCRIPTION | 10 MD5 | 44 +-- R/Cox.plot.R | 2 R/KM.plot.R | 2 R/KMg.plot.R | 2 R/bar.plot.R | 2 R/bar2.plot.R | 2 R/box.plot.R | 2 R/compareSNPs.R | 8 R/getResults.R | 2 R/norm.plot.R | 2 R/prepare.r | 11 R/snpQC.R | 6 build/vignette.rds |binary inst/app/server.R | 12 - inst/app/ui.R | 2 inst/doc/changelog | 5 inst/doc/compareGroups_vignette.html | 411 +++++++++++++++++------------------ man/compareGroups-internal.Rd | 2 man/compareGroups-package.Rd | 8 man/compareSNPs.Rd | 234 ++++++++++--------- man/createTable.Rd | 2 vignettes/compareGroups_vignette.bib | 8 23 files changed, 401 insertions(+), 378 deletions(-)
Title: Open Source OCR Engine
Description: An OCR engine with unicode (UTF-8) support that can recognize
over 100 languages out of the box.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between tesseract versions 1.2 dated 2016-11-13 and 1.3 dated 2016-12-07
DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++---------- NAMESPACE | 2 ++ NEWS | 6 ++++++ R/RcppExports.R | 4 ++++ R/onload.R | 14 ++++++++++++++ R/tessdata.R |only R/tesseract.R | 33 ++++++++++++++++++++++++++------- README.md | 13 +++++++++++-- man/tessdata.Rd |only man/tesseract.Rd | 12 +++++++++--- src/RcppExports.cpp | 13 +++++++++++++ src/tesseract.cpp | 10 +++++++++- 13 files changed, 110 insertions(+), 27 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial data, in R.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Michael Sumner [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 0.2-6 dated 2016-12-06 and 0.2-7 dated 2016-12-07
sf-0.2-6/sf/man/st_list.Rd |only sf-0.2-7/sf/DESCRIPTION | 6 sf-0.2-7/sf/MD5 | 90 ++++++------- sf-0.2-7/sf/NAMESPACE | 1 sf-0.2-7/sf/R/RcppExports.R | 12 - sf-0.2-7/sf/R/geom.R | 52 +++++-- sf-0.2-7/sf/R/init.R | 2 sf-0.2-7/sf/R/read.R | 8 + sf-0.2-7/sf/R/sfc.R | 2 sf-0.2-7/sf/inst/doc/sf1.html | 19 +- sf-0.2-7/sf/inst/doc/sf2.R | 4 sf-0.2-7/sf/inst/doc/sf2.Rmd | 10 - sf-0.2-7/sf/inst/doc/sf2.html | 18 +- sf-0.2-7/sf/inst/doc/sf3.html | 6 sf-0.2-7/sf/man/geos.Rd | 10 - sf-0.2-7/sf/man/st_layers.Rd |only sf-0.2-7/sf/src/RcppExports.cpp | 28 ---- sf-0.2-7/sf/src/gdal_read.cpp | 3 sf-0.2-7/sf/src/geos.cpp | 231 +++++++++++++++++----------------- sf-0.2-7/sf/tests/dplyr.R | 4 sf-0.2-7/sf/tests/dplyr.Rout.save | 15 -- sf-0.2-7/sf/tests/empty.R | 2 sf-0.2-7/sf/tests/empty.Rout.save | 7 - sf-0.2-7/sf/tests/gdal_geom.R | 27 ++- sf-0.2-7/sf/tests/gdal_geom.Rout.save | 57 ++++---- sf-0.2-7/sf/tests/geos.R | 4 sf-0.2-7/sf/tests/geos.Rout.save | 35 +++-- sf-0.2-7/sf/tests/grid.R | 6 sf-0.2-7/sf/tests/grid.Rout.save | 25 --- sf-0.2-7/sf/tests/pg.R | 6 sf-0.2-7/sf/tests/pg.Rout.save | 9 - sf-0.2-7/sf/tests/plot.R | 2 sf-0.2-7/sf/tests/plot.Rout.save | 7 - sf-0.2-7/sf/tests/read.R | 8 - sf-0.2-7/sf/tests/read.Rout.save | 33 ---- sf-0.2-7/sf/tests/roundtrip.R | 4 sf-0.2-7/sf/tests/roundtrip.Rout.save | 15 -- sf-0.2-7/sf/tests/sfc.R | 2 sf-0.2-7/sf/tests/sfc.Rout.save | 5 sf-0.2-7/sf/tests/sfg.R | 2 sf-0.2-7/sf/tests/sfg.Rout.save | 7 - sf-0.2-7/sf/tests/testthat.R | 2 sf-0.2-7/sf/tests/wkb.R | 2 sf-0.2-7/sf/tests/wkb.Rout.save | 5 sf-0.2-7/sf/tests/write.R | 2 sf-0.2-7/sf/tests/write.Rout.save | 5 sf-0.2-7/sf/vignettes/sf2.Rmd | 10 - 47 files changed, 393 insertions(+), 417 deletions(-)
Title: 'Rcpp' Interface to the APT Package Manager
Description: The 'APT Package Management System' provides Debian and
Debian-derived Linux systems with a powerful system to resolve package
dependencies. This package offers access directly from R.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppAPT versions 0.0.2 dated 2016-04-04 and 0.0.3 dated 2016-12-07
ChangeLog | 35 ++++++++++++++++++++++++++++++++ DESCRIPTION | 8 +++---- MD5 | 21 +++++++++++-------- R/RcppExports.R | 30 ++++++++++++++++++++++++--- README.md | 29 +++++++++++++++++++++----- man/dumpPackages.Rd | 2 - man/reverseDepends.Rd |only src/Makevars | 2 + src/RcppExports.cpp | 53 +++++++++++++++++++++++++++++-------------------- src/buildDepends.cpp | 2 - src/getPackages.cpp | 12 +++++++---- src/reverseDepends.cpp |only tests |only 13 files changed, 144 insertions(+), 50 deletions(-)
Title: A Flexible Microarray Data Simulation Model
Description: This function allows to generate two biological conditions synthetic
microarray dataset which has similar behavior to those currently
observed with common platforms. User provides a subset of parameters.
Available default parameters settings can be modified.
Author: Doulaye Dembele
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
Diff between madsim versions 1.2 dated 2016-06-16 and 1.2.1 dated 2016-12-07
DESCRIPTION | 9 ++++----- MD5 | 10 +++++----- R/madsim.R | 19 +++++++------------ man/madsim-package.Rd | 16 ++++++++-------- man/madsim.Rd | 22 +++++++++++----------- man/madsim_test.Rd | 14 +++++++------- 6 files changed, 42 insertions(+), 48 deletions(-)
Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between KernelKnn versions 1.0.2 dated 2016-09-08 and 1.0.3 dated 2016-12-07
DESCRIPTION | 8 MD5 | 20 NEWS.md | 11 R/RcppExports.R | 2 README.md | 5 inst/doc/binary_classification_using_the_ionosphere_data.html | 42 - inst/doc/image_classification_using_MNIST_CIFAR_data.html | 4 inst/doc/regression_using_the_housing_data.html | 4 src/Makevars | 2 src/RcppExports.cpp | 10 src/distance_metrics.cpp | 404 ++++------ 11 files changed, 240 insertions(+), 272 deletions(-)
Title: Stock Assessment Graphs Database Web Services
Description: R interface to access the web services of the ICES (International
Council for the Exploration of the Sea) Stock Assessment Graphs
database <http://ices.dk/marine-data/tools/Pages/stock-assessment-graphs.aspx>.
Author: Colin Millar [aut, cre],
Scott Large [aut],
Arni Magnusson [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>
Diff between icesSAG versions 1.0 dated 2016-08-09 and 1.2-0 dated 2016-12-07
icesSAG-1.0/icesSAG/R/checkInputs.R |only icesSAG-1.2-0/icesSAG/DESCRIPTION | 31 - icesSAG-1.2-0/icesSAG/MD5 | 33 - icesSAG-1.2-0/icesSAG/NAMESPACE | 27 - icesSAG-1.2-0/icesSAG/NEWS | 36 + icesSAG-1.2-0/icesSAG/R/findKey.R |only icesSAG-1.2-0/icesSAG/R/getFishStockReferencePoints.R | 59 +- icesSAG-1.2-0/icesSAG/R/getGraph.R |only icesSAG-1.2-0/icesSAG/R/getListStocks.R | 29 - icesSAG-1.2-0/icesSAG/R/getSAG.R |only icesSAG-1.2-0/icesSAG/R/getSAGGraphs.R |only icesSAG-1.2-0/icesSAG/R/getSummaryTable.R | 56 +- icesSAG-1.2-0/icesSAG/R/icesSAG-package.R | 32 - icesSAG-1.2-0/icesSAG/R/utilities.R | 302 +++++++++++---- icesSAG-1.2-0/icesSAG/man/findKey.Rd |only icesSAG-1.2-0/icesSAG/man/getFishStockReferencePoints.Rd | 27 - icesSAG-1.2-0/icesSAG/man/getGraphs.Rd |only icesSAG-1.2-0/icesSAG/man/getListStocks.Rd | 17 icesSAG-1.2-0/icesSAG/man/getSAG.Rd |only icesSAG-1.2-0/icesSAG/man/getSAGGraphs.Rd |only icesSAG-1.2-0/icesSAG/man/getSummaryTable.Rd | 28 - icesSAG-1.2-0/icesSAG/man/icesSAG-package.Rd | 30 - 22 files changed, 469 insertions(+), 238 deletions(-)
Title: High-Performance Stemmer, Tokenizer, and Spell Checker for R
Description: A spell checker and morphological analyzer library designed for
languages with rich morphology and complex word compounding or character
encoding. The package can check and analyze individual words as well as
search for incorrect words within a text, latex, html or xml document. Use
the 'devtools' package to spell check R documentation with 'hunspell'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between hunspell versions 2.2 dated 2016-11-09 and 2.3 dated 2016-12-07
hunspell-2.2/hunspell/src/hunspell/utf_info.cc |only hunspell-2.3/hunspell/DESCRIPTION | 6 - hunspell-2.3/hunspell/MD5 | 76 +++++++------- hunspell-2.3/hunspell/NEWS | 4 hunspell-2.3/hunspell/inst/doc/intro.R | 5 hunspell-2.3/hunspell/inst/doc/intro.Rmd | 5 hunspell-2.3/hunspell/inst/doc/intro.html | 114 +++++++++++----------- hunspell-2.3/hunspell/src/Makevars | 2 hunspell-2.3/hunspell/src/hunspell/affentry.hxx | 4 hunspell-2.3/hunspell/src/hunspell/affixmgr.cc | 4 hunspell-2.3/hunspell/src/hunspell/affixmgr.hxx | 4 hunspell-2.3/hunspell/src/hunspell/atypes.hxx | 6 - hunspell-2.3/hunspell/src/hunspell/baseaffix.hxx | 4 hunspell-2.3/hunspell/src/hunspell/csutil.cc | 2 hunspell-2.3/hunspell/src/hunspell/csutil.hxx | 4 hunspell-2.3/hunspell/src/hunspell/filemgr.hxx | 4 hunspell-2.3/hunspell/src/hunspell/hashmgr.cc | 22 ++-- hunspell-2.3/hunspell/src/hunspell/hashmgr.hxx | 4 hunspell-2.3/hunspell/src/hunspell/htypes.hxx | 4 hunspell-2.3/hunspell/src/hunspell/hunspell.cc | 44 +++++++- hunspell-2.3/hunspell/src/hunspell/hunspell.h | 6 - hunspell-2.3/hunspell/src/hunspell/hunspell.hxx | 16 ++- hunspell-2.3/hunspell/src/hunspell/hunvisapi.h | 4 hunspell-2.3/hunspell/src/hunspell/hunzip.hxx | 4 hunspell-2.3/hunspell/src/hunspell/langnum.hxx | 6 - hunspell-2.3/hunspell/src/hunspell/phonet.hxx | 4 hunspell-2.3/hunspell/src/hunspell/replist.cc | 2 hunspell-2.3/hunspell/src/hunspell/replist.hxx | 4 hunspell-2.3/hunspell/src/hunspell/suggestmgr.hxx | 4 hunspell-2.3/hunspell/src/hunspell/utf_info.cxx |only hunspell-2.3/hunspell/src/hunspell/w_char.hxx | 4 hunspell-2.3/hunspell/src/parsers/firstparser.hxx | 4 hunspell-2.3/hunspell/src/parsers/htmlparser.hxx | 4 hunspell-2.3/hunspell/src/parsers/latexparser.hxx | 4 hunspell-2.3/hunspell/src/parsers/manparser.hxx | 4 hunspell-2.3/hunspell/src/parsers/odfparser.hxx | 4 hunspell-2.3/hunspell/src/parsers/textparser.hxx | 4 hunspell-2.3/hunspell/src/parsers/xmlparser.hxx | 4 hunspell-2.3/hunspell/src/utils.h | 2 hunspell-2.3/hunspell/vignettes/intro.Rmd | 5 40 files changed, 230 insertions(+), 177 deletions(-)
Title: Amazon Web Services Request Signatures
Description: Generates request signatures for Amazon Web Services (AWS) APIs.
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between aws.signature versions 0.2.5 dated 2016-08-09 and 0.2.6 dated 2016-12-07
aws.signature-0.2.5/aws.signature/NEWS |only aws.signature-0.2.6/aws.signature/DESCRIPTION | 8 ++-- aws.signature-0.2.6/aws.signature/MD5 | 20 +++++----- aws.signature-0.2.6/aws.signature/NAMESPACE | 2 + aws.signature-0.2.6/aws.signature/NEWS.md |only aws.signature-0.2.6/aws.signature/R/v2.R | 8 ++-- aws.signature-0.2.6/aws.signature/R/v4.R | 30 +++++++++++----- aws.signature-0.2.6/aws.signature/README.md | 22 ++++++----- aws.signature-0.2.6/aws.signature/man/authorization.Rd | 10 +++-- aws.signature-0.2.6/aws.signature/man/string_to_sign.Rd | 2 - aws.signature-0.2.6/aws.signature/man/v2.Rd | 4 +- aws.signature-0.2.6/aws.signature/man/v4.Rd | 4 +- 12 files changed, 66 insertions(+), 44 deletions(-)
More information about EfficientMaxEigenpair at CRAN
Permanent link
Title: Model-Based Clustering and Classification with the Multivariate
t Distribution
Description: Fits mixtures of multivariate t-distributions (with eigen-decomposed covariance structure) via the expectation conditional-maximization algorithm under a clustering or classification paradigm.
Author: Jeffrey L. Andrews, Jaymeson R. Wickins, Nicholas M. Boers, Paul D. McNicholas
Maintainer: Jeffrey L. Andrews <jeff.andrews@ubc.ca>
Diff between teigen versions 2.1.1 dated 2016-09-11 and 2.2.0 dated 2016-12-07
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NAMESPACE | 1 + R/teigen.R | 33 ++++++++++++++++++++++++++++++++- man/predict.teigen.Rd |only man/teigen-package.Rd | 4 ++-- man/teigen.Rd | 2 +- 8 files changed, 51 insertions(+), 14 deletions(-)
Title: Drawing Survival Curves using 'ggplot2'
Description: Contains the function 'ggsurvplot()' for drawing easily beautiful
and 'ready-to-publish' survival curves with the 'number at risk' table. Other
functions are also available for visual examinations of 'cox' model assumptions.
Author: Alboukadel Kassambara [aut, cre],
Marcin Kosinski [aut]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between survminer versions 0.2.2 dated 2016-07-28 and 0.2.3 dated 2016-12-07
DESCRIPTION | 15 MD5 | 37 +- NAMESPACE | 7 NEWS.md | 47 ++ R/ggcoxdiagnostics.R | 58 ++- R/ggcoxfunctional.R | 4 R/ggcoxzph.R | 11 R/ggsurvplot.R | 500 ++++++++++++++++++++++++------- R/myeloma.R |only R/surv_cutpoint.R |only R/surv_summary.R |only R/utilities.R | 72 ++++ README.md | 66 +++- build/vignette.rds |binary data |only inst/doc/Informative_Survival_Plots.html | 37 +- man/ggcoxdiagnostics.Rd | 14 man/ggcoxfunctional.Rd | 2 man/ggcoxzph.Rd | 9 man/ggsurvplot.Rd | 96 ++++- man/myeloma.Rd |only man/surv_cutpoint.Rd |only man/surv_summary.Rd |only 23 files changed, 762 insertions(+), 213 deletions(-)
Title: Interface to Species Occurrence Data Sources
Description: A programmatic interface to many species occurrence data sources,
including Global Biodiversity Information Facility ('GBIF'), 'USGSs'
Biodiversity Information Serving Our Nation ('BISON'), 'iNaturalist',
Berkeley 'Ecoinformatics' Engine, 'eBird', 'AntWeb', Integrated Digitized
'Biocollections' ('iDigBio'), 'VertNet', Ocean 'Biogeographic' Information
System ('OBIS'), and Atlas of Living Australia ('ALA'). Includes
functionality for retrieving species occurrence data, and combining
those data.
Author: Scott Chamberlain [aut, cre],
Karthik Ram [ctb],
Ted Hart [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between spocc versions 0.5.4 dated 2016-10-08 and 0.6.0 dated 2016-12-07
DESCRIPTION | 16 ++-- MD5 | 50 +++++++----- NAMESPACE | 14 +++ NEWS.md | 49 +++++++++--- R/ala_helpers.R |only R/as.ala.R |only R/as.gbif.R | 22 +++-- R/as.idigbio.R | 8 +- R/as.obis.R |only R/obis_helpers.R |only R/occ.r | 17 +++- R/occ2df.R | 63 ++++++++++----- R/occ_names.R | 2 R/plugin_helpers.R | 8 +- R/plugins.r | 93 +++++++++++++++++++++++ R/spocc-package.R | 35 ++++---- README.md | 99 ++++++++++++++++--------- build/vignette.rds |binary inst/doc/spocc_vignette.Rmd | 170 ++++++++++++++++++++++--------------------- inst/doc/spocc_vignette.html | 168 +++++++++++++++++++++--------------------- man/as.ala.Rd |only man/as.gbif.Rd | 19 ++-- man/as.idigbio.Rd | 7 + man/as.obis.Rd |only man/occ.Rd | 80 +++++++++++++++++++- man/occ2df.Rd | 25 +++--- man/spocc-package.Rd | 34 ++++---- tests/testthat/test-occ.R | 21 +++++ vignettes/spocc_vignette.Rmd | 170 ++++++++++++++++++++++--------------------- 29 files changed, 745 insertions(+), 425 deletions(-)
Title: Performs Regularization on Structural Equation Models
Description: Uses both ridge and lasso penalties (and extensions) to penalize
specific parameters in structural equation models. The package offers additional
cost functions, cross validation, and other extensions beyond traditional SEM.
Author: Ross Jacobucci[aut,cre], Kevin J. Grimm [ctb]
Maintainer: Ross Jacobucci <rcjacobuc@gmail.com>
Diff between regsem versions 0.4.3 dated 2016-11-15 and 0.4.5 dated 2016-12-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/cv_regsem.R | 1 + R/multi_optim.R | 4 ++-- R/regsem.R | 2 +- 5 files changed, 11 insertions(+), 10 deletions(-)
Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction risk of species according to the IUCN (International Union for Conservation of Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between red versions 0.1.2 dated 2016-10-12 and 0.2.0 dated 2016-12-07
DESCRIPTION | 12 ++-- MD5 | 13 ++--- NAMESPACE | 1 R/red.R | 136 ++++++++++++++++++++++++++++++++++------------------- man/map.easy.Rd | 7 ++ man/raster.lat.Rd | 4 - man/raster.long.Rd | 6 +- man/records.Rd |only 8 files changed, 113 insertions(+), 66 deletions(-)
Title: 'ADMB' to R Interface Functions
Description: A series of functions to call 'AD Model Builder' (i.e.,
compile and run models) from within R, read the results back
into R as 'admb' objects, and provide standard accessors (i.e.
coef(), vcov(), etc.)
Author: Ben Bolker, Hans Skaug, Jeff Laake
Maintainer: Ben Bolker <bolker@mcmaster.ca>
Diff between R2admb versions 0.7.13 dated 2015-04-13 and 0.7.15 dated 2016-12-07
R2admb-0.7.13/R2admb/inst/admbtests/toy1_gen.tpl |only R2admb-0.7.13/R2admb/vignettes/Makefile |only R2admb-0.7.13/R2admb/vignettes/toy1_gen.tpl |only R2admb-0.7.15/R2admb/DESCRIPTION | 13 +-- R2admb-0.7.15/R2admb/MD5 | 59 +++++++-------- R2admb-0.7.15/R2admb/NAMESPACE | 16 +++- R2admb-0.7.15/R2admb/R/base-funs.r | 1 R2admb-0.7.15/R2admb/R/check_section.R | 1 R2admb-0.7.15/R2admb/R/read-funs.r | 31 +++++-- R2admb-0.7.15/R2admb/R/std_accessor.r | 57 +++++++------- R2admb-0.7.15/R2admb/R/write-funs.r | 1 R2admb-0.7.15/R2admb/build/vignette.rds |binary R2admb-0.7.15/R2admb/inst/NEWS.Rd | 15 +++ R2admb-0.7.15/R2admb/inst/admbtests/longvars.R |only R2admb-0.7.15/R2admb/inst/admbtests/longvars.tpl |only R2admb-0.7.15/R2admb/inst/doc/R2admb.R |only R2admb-0.7.15/R2admb/inst/doc/R2admb.Rnw |only R2admb-0.7.15/R2admb/inst/doc/R2admb.pdf |binary R2admb-0.7.15/R2admb/man/AIC.admb.Rd | 18 ++-- R2admb-0.7.15/R2admb/man/R2admb-package.Rd | 2 R2admb-0.7.15/R2admb/man/admb_version.Rd | 2 R2admb-0.7.15/R2admb/man/compile_admb.Rd | 2 R2admb-0.7.15/R2admb/man/do_admb.Rd | 4 - R2admb-0.7.15/R2admb/man/extract_gradient.Rd | 2 R2admb-0.7.15/R2admb/man/find_large_cor.Rd | 2 R2admb-0.7.15/R2admb/man/mcmc.control.Rd | 4 - R2admb-0.7.15/R2admb/man/plot.admb_hist.Rd | 2 R2admb-0.7.15/R2admb/man/read_pars.Rd | 16 ++-- R2admb-0.7.15/R2admb/man/read_plt.Rd | 2 R2admb-0.7.15/R2admb/man/run.control.Rd | 2 R2admb-0.7.15/R2admb/man/setup_admb.Rd | 8 +- R2admb-0.7.15/R2admb/man/write_pin.Rd | 2 R2admb-0.7.15/R2admb/vignettes/R2admb.Rnw | 36 ++++++--- R2admb-0.7.15/R2admb/vignettes/ReedfrogSizepred0_gen.tpl | 6 - 34 files changed, 190 insertions(+), 114 deletions(-)
Title: Predicting the Number of Species in a Random Sample
Description: Estimating the number of species represented at least r times in a random sample.
Author: Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer: Chao Deng <chaodeng@usc.edu>
Diff between preseqR versions 2.0.1.1 dated 2016-07-12 and 3.0.0 dated 2016-12-07
preseqR-2.0.1.1/preseqR/R/continued_fraction.R |only preseqR-2.0.1.1/preseqR/man/preseqR.interpolate.distinct.Rd |only preseqR-2.0.1.1/preseqR/man/preseqR.pf.mincount.Rd |only preseqR-2.0.1.1/preseqR/man/preseqR.pf.mincount.bootstrap.Rd |only preseqR-2.0.1.1/preseqR/man/preseqR.rfa.curve.Rd |only preseqR-2.0.1.1/preseqR/man/preseqR.rfa.estimate.Rd |only preseqR-2.0.1.1/preseqR/man/preseqR.rfa.species.accum.curve.Rd |only preseqR-2.0.1.1/preseqR/man/preseqR.ztnb.estimate.Rd |only preseqR-2.0.1.1/preseqR/man/preseqR.ztnb.mincount.Rd |only preseqR-2.0.1.1/preseqR/man/preseqR.ztnb.species.accum.curve.Rd |only preseqR-3.0.0/preseqR/DESCRIPTION | 14 preseqR-3.0.0/preseqR/MD5 | 52 - preseqR-3.0.0/preseqR/NAMESPACE | 19 preseqR-3.0.0/preseqR/R/compared_methods.R |only preseqR-3.0.0/preseqR/R/exome.R |only preseqR-3.0.0/preseqR/R/kmer.R |only preseqR-3.0.0/preseqR/R/mincount.R | 506 +++------- preseqR-3.0.0/preseqR/R/tools.R |only preseqR-3.0.0/preseqR/R/ztnb.R | 163 --- preseqR-3.0.0/preseqR/README.md | 7 preseqR-3.0.0/preseqR/data/Dickens.txt.gz |only preseqR-3.0.0/preseqR/data/Twitter.txt.gz |only preseqR-3.0.0/preseqR/man/Dickens.Rd |only preseqR-3.0.0/preseqR/man/FisherButterflyHist.Rd | 7 preseqR-3.0.0/preseqR/man/ShakespeareWordHist.Rd | 7 preseqR-3.0.0/preseqR/man/Twitter.Rd |only preseqR-3.0.0/preseqR/man/boneh.mincount.Rd |only preseqR-3.0.0/preseqR/man/chao.mincount.Rd |only preseqR-3.0.0/preseqR/man/ds.mincount.Rd |only preseqR-3.0.0/preseqR/man/ds.mincount.bootstrap.Rd |only preseqR-3.0.0/preseqR/man/preseqR.interpolate.mincount.Rd | 16 preseqR-3.0.0/preseqR/man/preseqR.nonreplace.sampling.Rd | 16 preseqR-3.0.0/preseqR/man/preseqR.package.Rd | 57 - preseqR-3.0.0/preseqR/man/preseqR.simu.hist.Rd | 9 preseqR-3.0.0/preseqR/man/preseqR.ztnb.em.Rd | 8 preseqR-3.0.0/preseqR/man/ztnb.mincount.Rd |only preseqR-3.0.0/preseqR/man/ztpois.mincount.Rd |only preseqR-3.0.0/preseqR/src/continued_fraction.cpp | 5 preseqR-3.0.0/preseqR/src/continued_fraction_c_interface.cpp | 134 -- 39 files changed, 312 insertions(+), 708 deletions(-)
Title: Fetch Species Origin Data from the Web
Description: Get species origin data (whether species is native/invasive) from the
following sources on the web: Encyclopedia of Life (<http://eol.org>), Flora
'Europaea' (<http://rbg-web2.rbge.org.uk/FE/fe.html>), Global Invasive Species
Database (<http://www.iucngisd.org/gisd>), the Native Species Resolver
(<http://bien.nceas.ucsb.edu/bien/tools/nsr/nsr-ws/>), Integrated Taxonomic
Information Service (<http://www.itis.gov/>), and Global Register of
Introduced and Invasive Species (<http://www.griis.org/>).
Author: Scott Chamberlain [aut, cre],
Ignasi Bartomeus [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between originr versions 0.1.0 dated 2016-05-06 and 0.2.0 dated 2016-12-07
DESCRIPTION | 15 ++++++++------- MD5 | 17 ++++++++++------- NAMESPACE | 1 + NEWS.md | 17 ++++++++++++++++- R/flora_europaea.R | 6 ++++++ R/griis.R |only R/is_native.R | 6 +++++- README.md | 30 ++++++++++++++++-------------- man/flora_europaea.Rd | 2 ++ man/griis.Rd |only tests/testthat/test-griis.R |only 11 files changed, 64 insertions(+), 30 deletions(-)
Title: Models Multivariate Cases Using Random Forests
Description: Models and predicts Multiple Features in single random forest considering the linear relation among the features.
Author: Raziur Rahman
Maintainer: Raziur Rahman <razeeebuet@gmail.com>
Diff between MultivariateRandomForest versions 1.1.1 dated 2016-10-23 and 1.1.2 dated 2016-12-07
DESCRIPTION | 6 MD5 | 22 +- R/RcppExports.R | 8 R/build_forest_predict.R | 2 R/build_single_tree.R | 13 - R/predicting.R |only R/single_tree_prediction.R | 2 R/split_node.R |only R/variable_importance_measure.R | 4 man/predicting.Rd | 4 man/split_node.Rd | 6 src/Node_Cost_C.cpp | 347 +--------------------------------------- src/RcppExports.cpp | 33 --- 13 files changed, 39 insertions(+), 408 deletions(-)
More information about MultivariateRandomForest at CRAN
Permanent link
Title: Analyze and Interpolate Geostatistical Count Data using Gaussian
Copula
Description: Provides a variety of functions to analyze and model
geostatistical count data with Gaussian copulas, including
1) data simulation and visualization;
2) correlation structure assessment (here also known as the NORTA);
3) calculate multivariate normal rectangle probabilities;
4) likelihood inference and parallel prediction at unsampled locations.
Author: Zifei Han
Maintainer: Zifei Han <hanzifei1@gmail.com>
Diff between gcKrig versions 1.0.0 dated 2016-11-10 and 1.0.1 dated 2016-12-07
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/S3Methods.R | 10 ++++++++-- R/mvnintGHK.R | 23 +++++++++++++++++------ man/mlegc.Rd | 2 +- man/plotpredgc.Rd | 5 +++-- man/profilemlegc.Rd | 2 +- src/mvnInt.cpp | 4 ++-- 8 files changed, 44 insertions(+), 26 deletions(-)
Title: Data Converter Module
Description: Data Converter Module (DCM) converts the dataset format from split into stack and to the reverse.
Author: Delphi Intelligence
Maintainer: Nery Sofia Huerta-Pacheco <nehuerta@uv.mx>
Diff between DCM versions 0.1.0 dated 2016-12-04 and 0.1.1 dated 2016-12-07
DCM-0.1.0/DCM/R/logo |only DCM-0.1.1/DCM/DESCRIPTION | 6 +++--- DCM-0.1.1/DCM/MD5 | 7 +++---- DCM-0.1.1/DCM/R/DCM.R | 24 ++++++++++++++++-------- DCM-0.1.1/DCM/man/DCM.Rd | 2 +- 5 files changed, 23 insertions(+), 16 deletions(-)
Title: Fix Data and Create Report Tables from Different Objects
Description: Fixes data errors in numerical, factor and date variables and performs report tables from models and summaries.
Author: Victoria Fornes Ferrer, David Hervas Marin
Maintainer: David Hervas Marin <ddhervas@yahoo.es>
Diff between clickR versions 0.1.8 dated 2016-11-21 and 0.1.12 dated 2016-12-07
DESCRIPTION | 6 ++-- MD5 | 37 ++++++++++++++++-------------- NAMESPACE | 2 + NEWS |only R/descriptive.R | 14 +++++------ R/report_model.R | 52 +++++++++++++++++++++++++++++++------------ man/fix.dates.Rd | 7 ++--- man/fix.numerics.Rd | 2 - man/report.betareg.Rd | 2 - man/report.clm.Rd | 2 - man/report.clmm.Rd | 2 - man/report.coxph.Rd | 2 - man/report.factor.Rd |only man/report.glm.Rd | 2 - man/report.glmerMod.Rd | 2 - man/report.lm.Rd | 2 - man/report.lmerMod.Rd | 2 - man/report.lqmm.Rd | 2 - man/report.merModLmerTest.Rd | 2 - man/report.numeric.Rd |only man/report.rq.Rd | 2 - 21 files changed, 85 insertions(+), 57 deletions(-)
Title: Retrieve U.S. Flu Season Data from the CDC FluView Portal
Description: The U.S. Centers for Disease Control (CDC) maintains a portal
<http://gis.cdc.gov/grasp/fluview/fluportaldashboard.html> for
accessing state, regional and national influenza statistics as well as
Mortality Surveillance Data. The Flash interface makes it difficult and
time-consuming to select and retrieve influenza data. This package
provides functions to access the data provided by the portal's underlying API.
Author: Bob Rudis (bob@rud.is)
Maintainer: Bob Rudis <bob@rud.is>
Diff between cdcfluview versions 0.4.0 dated 2015-08-09 and 0.5.1 dated 2016-12-07
cdcfluview-0.4.0/cdcfluview/R/cdcfluview-package.r |only cdcfluview-0.5.1/cdcfluview/DESCRIPTION | 27 ++++--- cdcfluview-0.5.1/cdcfluview/MD5 | 32 ++++---- cdcfluview-0.5.1/cdcfluview/NAMESPACE | 14 +++ cdcfluview-0.5.1/cdcfluview/R/aaa.r |only cdcfluview-0.5.1/cdcfluview/R/cdcfluview-package.R |only cdcfluview-0.5.1/cdcfluview/R/datasets.r | 4 - cdcfluview-0.5.1/cdcfluview/R/get_flu_data.r | 25 ++++-- cdcfluview-0.5.1/cdcfluview/R/get_state_data.r | 37 +++------- cdcfluview-0.5.1/cdcfluview/R/get_weekly_flu_report.r | 15 ++-- cdcfluview-0.5.1/cdcfluview/R/mortalty.r |only cdcfluview-0.5.1/cdcfluview/R/zzz.r |only cdcfluview-0.5.1/cdcfluview/man/cdcfluview.Rd | 16 ++-- cdcfluview-0.5.1/cdcfluview/man/census_regions.Rd | 4 - cdcfluview-0.5.1/cdcfluview/man/get_flu_data.Rd | 4 - cdcfluview-0.5.1/cdcfluview/man/get_mortality_surveillance_data.Rd |only cdcfluview-0.5.1/cdcfluview/man/get_state_data.Rd | 8 +- cdcfluview-0.5.1/cdcfluview/man/get_weekly_flu_report.Rd | 6 - cdcfluview-0.5.1/cdcfluview/man/hhs_regions.Rd | 4 - cdcfluview-0.5.1/cdcfluview/tests/testthat/test-cdcfluview.R | 4 - 20 files changed, 108 insertions(+), 92 deletions(-)