Title: Estimation using Sequential Offsetted Regression
Description: Estimation for longitudinal data following outcome dependent sampling using the sequential offsetted regression technique. Includes support for binary, count, and continuous data. The first regression is a logistic regression, which uses a known ratio (the probability of being sampled given that the subject/observation was referred divided by the probability of being sampled given that the subject/observation was no referred) as an offset to estimate the probability of being referred given outcome and covariates. The second regression uses this estimated probability to calculate the mean population response given covariates.
Author: Lee McDaniel [aut, cre],
Jonathan Schildcrout [aut]
Maintainer: Lee McDaniel <lmcda4@lsuhsc.edu>
Diff between SOR versions 0.22 dated 2014-09-15 and 0.23.0 dated 2016-12-09
DESCRIPTION | 22 MD5 | 18 NAMESPACE | 6 R/binomSOR.R | 140 +- R/common.R | 49 R/geemR.R | 3197 +++++++++++++++++++++++++++++++++-------------------------- R/normSOR.R | 330 +++--- R/poisSOR.R | 258 +++- R/sor.R | 143 ++ man/sor.Rd | 27 10 files changed, 2434 insertions(+), 1756 deletions(-)
Title: Enhanced Quantitative Trading Modelling
Description: Download and organize historical market data from multiple sources like Yahoo (<https://finance.yahoo.com>), Google (<https://www.google.com/finance>), Finam (<https://www.finam.ru/profile/moex-akcii/sberbank/export/>), MOEX (<https://www.moex.com/en/derivatives/contracts.aspx>) and IQFeed (<https://www.iqfeed.net/symbolguide/index.cfm?symbolguide=lookup>). Code your trading algorithms in modern C++11 with powerful event driven tick processing API including trading costs and exchange communication latency and transform detailed data seamlessly into R. In just few lines of code you will be able to visualize every step of your trading model from tick data to multi dimensional heat maps.
Author: Stanislav Kovalevsky
Maintainer: Stanislav Kovalevsky <so.kovalevsky@gmail.com>
Diff between QuantTools versions 0.5.2 dated 2016-12-08 and 0.5.3 dated 2016-12-09
DESCRIPTION | 6 MD5 | 20 NEWS.md | 2 R/doc_Cost.R | 74 +-- R/doc_Processor.R | 308 ++++++------- inst/include/BackTest/Processor.h | 27 + inst/include/BackTest/Statistics.h | 818 +++++++++++++++++------------------ inst/include/Indicators/RollLinReg.h | 2 inst/include/Indicators/RollSd.h | 2 man/cpp_Cost.Rd | 106 ++-- man/cpp_Processor.Rd | 358 +++++++-------- 11 files changed, 877 insertions(+), 846 deletions(-)
Title: Inferring Shared Modules from Multiple Gene Expression Datasets
with Partially Overlapping Gene Sets
Description: A method to infer modules of co-expressed genes and the
dependencies among the modules from multiple expression datasets that may
contain different sets of genes. Please refer to: Extracting a low-dimensional
description of multiple gene expression datasets reveals a potential driver for
tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon,
Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In
Lee (2016) <DOI:10.1186/s13073-016-0319-7>.
Author: Safiye Celik
Maintainer: Safiye Celik <safiye@cs.washington.edu>
Diff between INSPIRE versions 1.3 dated 2016-09-20 and 1.5 dated 2016-12-09
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/INSPIRE.R | 8 +++++--- man/INSPIRE.Rd | 8 ++++++-- 4 files changed, 18 insertions(+), 12 deletions(-)
Title: Bibliometric and Co-Citation Analysis Tool
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from SCOPUS (<http://scopus.com>) and
Thomson Reuters' ISI Web of Knowledge (<http://www.webofknowledge.com/>) databases, performing bibliometric analysis
and building data matrices for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 1.2 dated 2016-10-18 and 1.3 dated 2016-12-09
DESCRIPTION | 16 +- MD5 | 36 ++--- NAMESPACE | 4 NEWS | 9 + R/biblioAnalysis.R | 7 + R/biblioNetwork.R | 50 ++++++++ R/convert2df.R | 4 R/summary.bibliometrix.R | 13 +- R/termExtraction.R | 28 ++++ build/vignette.rds |binary data/stopwords.rda |binary inst/CITATION | 10 - inst/doc/bibliometrix-vignette.Rmd | 11 - inst/doc/bibliometrix-vignette.html | 219 ++++++++++++++++++++---------------- man/biblioAnalysis.Rd | 1 man/biblioNetwork.Rd | 11 + man/summary.bibliometrix.Rd | 1 man/termExtraction.Rd | 12 + vignettes/bibliometrix-vignette.Rmd | 11 - 19 files changed, 297 insertions(+), 146 deletions(-)
Title: Basic Robust Statistics
Description: "Essential" Robust Statistics.
Tools allowing to analyze data with robust methods. This includes
regression methodology including model selections and multivariate
statistics where we strive to cover the book "Robust Statistics,
Theory and Methods" by 'Maronna, Martin and Yohai'; Wiley 2006.
Author: Martin Maechler [aut, cre],
Peter Rousseeuw [ctb] (Qn and Sn),
Christophe Croux [ctb] (Qn and Sn),
Valentin Todorov [aut] (most robust Cov),
Andreas Ruckstuhl [aut] (nlrob, anova, glmrob),
Matias Salibian-Barrera [aut] (lmrob orig.),
Tobias Verbeke [ctb] (mc, adjbox),
Manuel Koller [aut] (lmrob, psi-func.),
Eduardo L. T. Conceicao [aut] (MM-, tau-, CM-, and MTL- nlrob),
Maria Anna di Palma [ctb] (initial version of Comedian)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustbase versions 0.92-6 dated 2016-05-31 and 0.92-7 dated 2016-12-09
robustbase-0.92-6/robustbase/tests/lmrob-data.Rout.save |only robustbase-0.92-7/robustbase/DESCRIPTION | 45 - robustbase-0.92-7/robustbase/MD5 | 110 +-- robustbase-0.92-7/robustbase/NAMESPACE | 5 robustbase-0.92-7/robustbase/R/adjoutlyingness.R | 6 robustbase-0.92-7/robustbase/R/anova.lmrob.R | 7 robustbase-0.92-7/robustbase/R/lmrob.M.S.R | 1 robustbase-0.92-7/robustbase/R/lmrob.MM.R | 332 +++++----- robustbase-0.92-7/robustbase/R/lmrob.R | 16 robustbase-0.92-7/robustbase/R/nlrob.R | 8 robustbase-0.92-7/robustbase/R/psi-rho-funs.R | 4 robustbase-0.92-7/robustbase/TODO | 12 robustbase-0.92-7/robustbase/build/vignette.rds |binary robustbase-0.92-7/robustbase/inst/CITATION | 36 - robustbase-0.92-7/robustbase/inst/NEWS.Rd | 17 robustbase-0.92-7/robustbase/inst/doc/estimating.functions.R | 4 robustbase-0.92-7/robustbase/inst/doc/fastMcd-kmini.Rnw | 2 robustbase-0.92-7/robustbase/inst/doc/fastMcd-kmini.pdf |binary robustbase-0.92-7/robustbase/inst/doc/lmrob_simulation.R | 40 - robustbase-0.92-7/robustbase/inst/doc/lmrob_simulation.Rnw | 16 robustbase-0.92-7/robustbase/inst/doc/lmrob_simulation.pdf |binary robustbase-0.92-7/robustbase/inst/doc/psi_functions.R | 69 +- robustbase-0.92-7/robustbase/inst/doc/psi_functions.Rnw | 128 ++- robustbase-0.92-7/robustbase/inst/doc/psi_functions.pdf |binary robustbase-0.92-7/robustbase/inst/xtraR/m-s_fns.R | 6 robustbase-0.92-7/robustbase/inst/xtraR/plot-psiFun.R | 3 robustbase-0.92-7/robustbase/man/M.psi.Rd | 20 robustbase-0.92-7/robustbase/man/adjOutlyingness.Rd | 7 robustbase-0.92-7/robustbase/man/covComed.Rd | 2 robustbase-0.92-7/robustbase/man/covMcd.Rd | 2 robustbase-0.92-7/robustbase/man/lmrob..D..fit.Rd | 16 robustbase-0.92-7/robustbase/man/lmrob..M..fit.Rd | 34 - robustbase-0.92-7/robustbase/man/lmrob.Rd | 24 robustbase-0.92-7/robustbase/man/lmrob.control.Rd | 15 robustbase-0.92-7/robustbase/man/lmrob.fit.Rd | 4 robustbase-0.92-7/robustbase/man/nlrob.Rd | 5 robustbase-0.92-7/robustbase/man/psiFindc.Rd |only robustbase-0.92-7/robustbase/man/summary.lmrob.Rd | 7 robustbase-0.92-7/robustbase/src/lmrob.c | 32 robustbase-0.92-7/robustbase/tests/lmrob-data.R | 123 +++ robustbase-0.92-7/robustbase/tests/lmrob-methods.Rout.save | 36 - robustbase-0.92-7/robustbase/tests/lmrob-psifns.R | 17 robustbase-0.92-7/robustbase/tests/lmrob-psifns.Rout.save | 29 robustbase-0.92-7/robustbase/tests/mc-strict.R | 4 robustbase-0.92-7/robustbase/vignettes/fastMcd-kmini.Rnw | 2 robustbase-0.92-7/robustbase/vignettes/lmrob_simulation.Rnw | 16 robustbase-0.92-7/robustbase/vignettes/plot-fig-example-design.pdf |binary robustbase-0.92-7/robustbase/vignettes/plot-fig-pred-points.pdf |binary robustbase-0.92-7/robustbase/vignettes/psi-GGW.pdf |binary robustbase-0.92-7/robustbase/vignettes/psi-Hampel.pdf |binary robustbase-0.92-7/robustbase/vignettes/psi-Huber.pdf |binary robustbase-0.92-7/robustbase/vignettes/psi-LQQ.pdf |binary robustbase-0.92-7/robustbase/vignettes/psi-Welsh.pdf |binary robustbase-0.92-7/robustbase/vignettes/psi-bisquare.pdf |binary robustbase-0.92-7/robustbase/vignettes/psi-optimal.pdf |binary robustbase-0.92-7/robustbase/vignettes/psi_functions.Rnw | 128 ++- robustbase-0.92-7/robustbase/vignettes/robustbase.bib | 75 +- 57 files changed, 942 insertions(+), 523 deletions(-)
Title: Differential RNA Methylation Analysis with
Quad-Negative-Binomial Model
Description: We present QNB, a statistical approach for differential RNA
methylation analysis with count-based small-sample sequencing
data. The method is based on 4 independent negative binomial
distributions, and with their variances and means linked by
local regressions, respectively. Please don't hesitate to
contact <liulian19860905@163.com> if you have any questions.
Author: Lian Liu <liulian19860905@163.com>
Maintainer: Lian Liu <liulian19860905@163.com>
Diff between QNB versions 1.0.1 dated 2016-11-10 and 1.0.2 dated 2016-12-09
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/plotDispersion.R | 8 ++++---- inst/doc/QNB-Overview.Rnw | 4 ++-- inst/doc/QNB-Overview.pdf |binary man/QNB-package.Rd | 4 ++-- vignettes/QNB-Overview.Rnw | 4 ++-- 7 files changed, 20 insertions(+), 20 deletions(-)
Title: Isotonic Inference for Circular Data
Description: A bunch of functions to deal with circular data under order restrictions.
Author: Sandra Barragan, Miguel A. Fernandez and Cristina Rueda.
Maintainer: Sandra Barragan <sandra.barragan@gmail.com>
Diff between isocir versions 1.1-3 dated 2014-02-27 and 2.0-6 dated 2016-12-09
DESCRIPTION | 18 +- MD5 | 56 ++++--- NAMESPACE | 14 + NEWS | 196 +++++++++++++++++++++++++ R/ACO.R |only R/CIRE.R | 380 ++++++++++++++++++++++++-------------------------- R/CLM.R |only R/cirKendall.R |only R/cond.test.R | 32 ++-- R/eq.test.R |only R/isocir.R | 2 R/mcirktau.R |only R/mrl.R | 45 ++++- R/msce.R |only R/sce.R | 15 + README | 4 build/vignette.rds |binary data/cirgenes.rda |binary data/datareplic.rda |binary inst/COPYRIGHTS | 2 inst/doc/isocir.pdf |binary man/ACO.Rd |only man/CIRE.Rd | 26 +-- man/CLM.Rd |only man/cirKendall.Rd |only man/cirgenes.Rd | 16 +- man/cond.test.Rd | 39 ++--- man/eq.test.Rd |only man/isocir-package.Rd | 23 ++- man/mcirktau.Rd |only man/mrl.Rd | 15 + man/msce.Rd |only man/sce.Rd | 11 - src/auxiliary.c |only src/funCIRE.c | 156 +------------------- src/funCIREnuevo.c |only 36 files changed, 577 insertions(+), 473 deletions(-)
Title: Manage, Analyse and Simulate Hyperspectral Data
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut],
Hanna Meyer [aut],
Joerg Bendix [aut]
Maintainer: Lukas W. Lehnert <lukaslehnert@googlemail.com>
Diff between hsdar versions 0.5.0 dated 2016-09-09 and 0.5.1 dated 2016-12-09
ChangeLog | 9 +++++++++ DESCRIPTION | 10 +++++----- MD5 | 28 +++++++++++++++------------- R/hyperSpec_conversion.R |only R/speclib.R | 5 +++++ R/speclib_subset.R | 14 ++++++++++++-- R/spectral_resampling.R | 6 +++++- build/hsdar.pdf |binary build/vignette.rds |binary inst/doc/Hsdar-intro.pdf |binary inst/doc/References.pdf |binary man/Speclib-class.Rd | 2 +- man/as_hyperSpec.Rd |only man/speclib.Rd | 3 +++ man/transform.Rd | 2 +- src/apply_response.f90 | 25 +++++++++++++++---------- 16 files changed, 71 insertions(+), 33 deletions(-)
Title: Manage Tick-by-Tick Transaction Data
Description: Manager of tick-by-tick transaction data that performs 'cleaning', 'aggregation' and 'import' in an efficient and fast way. The package engine, written in C++, exploits the 'zlib' and 'gzstream' libraries to handle gzipped data without need to uncompress them. 'Cleaning' and 'aggregation' are performed according to Brownlees and Gallo (2006) <DOI:10.1016/j.csda.2006.09.030>. Currently, TAQMNGR processes raw data from WRDS (Wharton Research Data Service, <https://wrds-web.wharton.upenn.edu/wrds/>).
Author: Francesco Calvori, Fabrizio Cipollini, Giampiero M. Gallo and 'gzstream' authors.
Maintainer: Fabrizio Cipollini <cipollini.fabrizio@gmail.com>
Diff between TAQMNGR versions 2015.2-1 dated 2015-02-22 and 2016.12-1 dated 2016-12-09
ChangeLog | 6 ++++++ DESCRIPTION | 12 ++++++------ MD5 | 14 ++++++++------ src/clean_trade_ms.cpp |only src/clean_trades.cpp | 9 +++++++++ src/cleaning_report.cpp | 7 +++---- src/gzipdec_ms.cpp |only src/is_quote.cpp | 19 +++++++++++++++---- src/taq.h | 17 +++++++++++++++++ 9 files changed, 64 insertions(+), 20 deletions(-)
Title: Diversity Measures for Complex Systems
Description: Computes the most common diversity measures used in social and other sciences, and includes new measures from interdisciplinary research.
Author: Miguel R. Guevara <miguel.guevara@upla.cl>, Dominik Hartmann
<d.hartmann@uni-hohenheim.de>, Marcelo Mendoza
<marcelo.mendoza@usm.cl>
Maintainer: Miguel R. Guevara <miguel.guevara@upla.cl>
Diff between diverse versions 0.1.2 dated 2016-06-03 and 0.1.4 dated 2016-12-09
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- R/utils.R | 14 +++++--------- 3 files changed, 12 insertions(+), 15 deletions(-)
Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors; automatic propagation, conversion, derivation and simplification of units; raising errors in case of unit incompatibility. Compatible with the difftime class. Uses the UNIDATA udunits library and unit database for unit conversion and compatibility checking.
Author: Edzer Pebesma [aut, cre],
Thomas Mailund [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between units versions 0.4 dated 2016-11-21 and 0.4-1 dated 2016-12-09
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/conversion.R | 8 ++------ inst/doc/measurement_units_in_R.Rnw | 2 +- inst/doc/measurement_units_in_R.pdf |binary vignettes/measurement_units_in_R.Rnw | 2 +- vignettes/measurement_units_in_R.bib | 11 ++++++----- 7 files changed, 20 insertions(+), 23 deletions(-)
Title: Fast and Easy Quality Control of EWAS Results Files
Description: Tools for (automated and manual) quality control of
the results of Epigenome-Wide Association Studies.
Author: Peter J. van der Most,
Leanne K. Kupers,
Ilja Nolte
Maintainer: Peter J. van der Most <p.j.van.der.most@umcg.nl>
Diff between QCEWAS versions 1.0-9 dated 2016-10-31 and 1.1-0 dated 2016-12-09
QCEWAS-1.0-9/QCEWAS/R/script_v10-9_package.R |only QCEWAS-1.0-9/QCEWAS/inst/doc/QCEWAS_Quick_Start_Guide_v109.docx |only QCEWAS-1.1-0/QCEWAS/DESCRIPTION | 8 ++++---- QCEWAS-1.1-0/QCEWAS/MD5 | 8 ++++---- QCEWAS-1.1-0/QCEWAS/R/script_v11-0_package.R |only QCEWAS-1.1-0/QCEWAS/inst/doc/QCEWAS_Quick_Start_Guide_v110.docx |only QCEWAS-1.1-0/QCEWAS/man/QCEWAS-package.Rd | 4 ++-- 7 files changed, 10 insertions(+), 10 deletions(-)
Title: Nested and Crossed Block Designs for Unstructured and Factorial
Treatment Sets
Description: Constructs randomized nested or crossed block designs for
unstructured treatment sets or for factorial treatments sets. Where the
treatments are factorial, the treatments model can be defined by using the
model formulation defined in the model.matrix {stats} base package. Blocks
are nested hierarchically in successive blocks strata and the blocks
model in any particular stratum can comprise either a simple nested blocks
design or a crossed row-and-column design. Block sizes in any one stratum
are either all equal or differ, at most, by one plot. The design outputs
include a data frame showing the allocation of treatments to blocks, a table
showing block levels, the achieved D-efficiency, the achieved A-efficiency
(unstructured treatments only) and A-efficiency upper bounds, where available,
for each stratum in the design. For designs with simple unstructured treatments,
a plan layout showing the allocation of treatments to blocks or to rows and
columns in the bottom stratum of the design is also given.
Author: R. N. Edmondson
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 2.2 dated 2016-09-01 and 2.3 dated 2016-12-09
DESCRIPTION | 36 - MD5 | 14 NAMESPACE | 3 R/blocks.r | 1242 ++++++++++++++++++++++++-------------------- R/blocksdesign-package.r | 28 inst/doc/blocksdesign.html | 8 man/blocks.Rd | 210 ++++--- man/blocksdesign-package.Rd | 28 8 files changed, 876 insertions(+), 693 deletions(-)
Title: Selected ISO Codes
Description: ISO language, territory, currency, script and character codes.
Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217
currency codes, ISO 15924 script codes, and the ISO 8859 character codes
as well as the UN M.49 area codes.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between ISOcodes versions 2016.03.15 dated 2016-03-15 and 2016.12.09 dated 2016-12-09
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- data/ISO_15924.rda |binary data/ISO_3166_1.rda |binary data/ISO_3166_2.rda |binary data/ISO_3166_3.rda |binary data/ISO_4217.rda |binary data/ISO_4217_Historic.rda |binary data/ISO_639_2.rda |binary data/ISO_639_3.rda |binary data/ISO_639_3_Retirements.rda |binary data/ISO_639_5.rda |binary data/ISO_8859.rda |binary data/UN_M.49_Countries.rda |binary data/UN_M.49_Regions.rda |binary man/ISO_639.Rd | 2 +- 16 files changed, 19 insertions(+), 19 deletions(-)
Title: Functions to Compute Compositional Turnover Using Zeta Diversity
Description: Functions to compute compositional turnover using zeta-diversity,
the number of species shared by multiple assemblages. The package includes
functions to compute zeta-diversity for a specific number of
assemblages and to compute zeta-diversity for a range of numbers of
assemblages. It also includes functions to explain how zeta-diversity
varies with distance and with differences in environmental variables
between assemblages, using generalised linear models, linear models
with negative constraints, generalised additive models,shape
constrained additive models, and I-splines.
Author: Guillaume Latombe, Melodie A. McGeoch, David A. Nipperess, Cang Hui
Maintainer: Guillaume Latombe <guillaume.latombe@monash.edu>
Diff between zetadiv versions 0.1 dated 2015-06-04 and 1.0 dated 2016-12-09
zetadiv-0.1/zetadiv/R/functions_package.R |only zetadiv-0.1/zetadiv/data/BCI.env.coarse.RData |only zetadiv-0.1/zetadiv/data/BCI.env.fine.RData |only zetadiv-0.1/zetadiv/data/BCI.spec.coarse.RData |only zetadiv-0.1/zetadiv/data/BCI.spec.fine.RData |only zetadiv-0.1/zetadiv/man/BCI.env.coarse.Rd |only zetadiv-0.1/zetadiv/man/BCI.env.fine.Rd |only zetadiv-0.1/zetadiv/man/BCI.spec.coarse.Rd |only zetadiv-0.1/zetadiv/man/BCI.spec.fine.Rd |only zetadiv-0.1/zetadiv/man/Zeta.decline.Rd |only zetadiv-0.1/zetadiv/man/Zeta.gam.Rd |only zetadiv-0.1/zetadiv/man/Zeta.lm.Rd |only zetadiv-0.1/zetadiv/man/Zeta.order.Rd |only zetadiv-1.0/zetadiv/DESCRIPTION | 26 ++- zetadiv-1.0/zetadiv/MD5 | 61 ++++--- zetadiv-1.0/zetadiv/NAMESPACE | 23 ++ zetadiv-1.0/zetadiv/R/unexported.functions.from.scam.1.2.R |only zetadiv-1.0/zetadiv/R/zetadiv.R |only zetadiv-1.0/zetadiv/data/bird.env.coarse.RData |only zetadiv-1.0/zetadiv/data/bird.env.fine.RData |only zetadiv-1.0/zetadiv/data/bird.spec.coarse.RData |only zetadiv-1.0/zetadiv/data/bird.spec.fine.RData |only zetadiv-1.0/zetadiv/man/Ispline.Rd |only zetadiv-1.0/zetadiv/man/Marion.env.Rd | 10 - zetadiv-1.0/zetadiv/man/Marion.species.Rd | 10 - zetadiv-1.0/zetadiv/man/Plot.zeta.ddecay.Rd |only zetadiv-1.0/zetadiv/man/Plot.zeta.ddecays.Rd |only zetadiv-1.0/zetadiv/man/Plot.zeta.decline.Rd |only zetadiv-1.0/zetadiv/man/Plot.zeta.scale.min.dist.Rd |only zetadiv-1.0/zetadiv/man/Plot.zeta.scale.regular.Rd |only zetadiv-1.0/zetadiv/man/Predict.msgdm.Rd |only zetadiv-1.0/zetadiv/man/Zeta.ddecay.Rd | 81 +++++++-- zetadiv-1.0/zetadiv/man/Zeta.ddecays.Rd | 58 ++++-- zetadiv-1.0/zetadiv/man/Zeta.decline.ex.Rd |only zetadiv-1.0/zetadiv/man/Zeta.decline.mc.Rd |only zetadiv-1.0/zetadiv/man/Zeta.msgdm.Rd |only zetadiv-1.0/zetadiv/man/Zeta.order.ex.Rd |only zetadiv-1.0/zetadiv/man/Zeta.order.mc.Rd |only zetadiv-1.0/zetadiv/man/Zeta.sam.sensitivity.Rd | 62 ++++--- zetadiv-1.0/zetadiv/man/Zeta.scale.min.dist.Rd | 59 +++++- zetadiv-1.0/zetadiv/man/Zeta.scale.regular.Rd | 47 ++++- zetadiv-1.0/zetadiv/man/Zeta.varpart.Rd | 110 ++++++++----- zetadiv-1.0/zetadiv/man/bird.env.coarse.Rd |only zetadiv-1.0/zetadiv/man/bird.env.fine.Rd |only zetadiv-1.0/zetadiv/man/bird.spec.coarse.Rd |only zetadiv-1.0/zetadiv/man/bird.spec.fine.Rd |only zetadiv-1.0/zetadiv/man/glm.cons.Rd |only zetadiv-1.0/zetadiv/man/glm.fit.cons.Rd |only zetadiv-1.0/zetadiv/man/pie.neg.Rd | 30 +-- zetadiv-1.0/zetadiv/man/rescale.min.dist.Rd |only zetadiv-1.0/zetadiv/man/rescale.regular.Rd |only 51 files changed, 383 insertions(+), 194 deletions(-)
Title: Change-Point Estimation using Shape-Restricted Splines
Description: In a scatterplot where the response variable is Gaussian, Poisson or binomial, we consider the case in which the mean function is smooth with a change-point, which is a mode, an inflection point or a jump point. The main routine estimates the mean curve and the change-point as well using shape-restricted B-splines. An optional subroutine delivering a bootstrap confidence interval for the change-point is incorporated in the main routine.
Author: Xiyue Liao and Mary C Meyer
Maintainer: Xiyue Liao <xiyue@rams.colostate.edu>
Diff between ShapeChange versions 1.3 dated 2016-03-20 and 1.4 dated 2016-12-09
DESCRIPTION | 10 MD5 | 6 R/ShapeChange.R | 1350 +++++++++++++++++++++++++++++++------------------------- man/changept.Rd | 14 4 files changed, 782 insertions(+), 598 deletions(-)
Title: 'Rcpp' Integration for Numerical Computing Libraries
Description: A collection of open source libraries for numerical computing
(numerical integration, optimization, etc.) and their integration with
'Rcpp'.
Author: Yixuan Qiu [aut, cre],
Sreekumar Balan [aut] (Numerical integration library),
Matt Beall [aut] (Numerical integration library),
Mark Sauder [aut] (Numerical integration library),
Naoaki Okazaki [aut] (The libLBFGS library),
Thomas Hahn [aut] (The Cuba library)
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between RcppNumerical versions 0.3-0 dated 2016-12-08 and 0.3-1 dated 2016-12-09
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- README.md | 8 +++++++- inst/NEWS.Rd | 8 ++++++++ inst/doc/introduction.Rmd | 8 +++++++- inst/doc/introduction.html | 12 +++++++++--- inst/include/Func.h | 14 +++++++------- inst/include/integration/Integrator.h | 2 +- vignettes/introduction.Rmd | 8 +++++++- 9 files changed, 58 insertions(+), 26 deletions(-)
Title: Connector to the Objective Revision Evaluation Service (ORES)
Description: A connector to ORES (<http://ores.wmflabs.org/>), an AI project to provide edit scoring for content
on Wikipedia and other Wikimedia projects. This lets a researcher identify
if edits are likely to be reverted, damaging, or made in good faith.
Author: Oliver Keyes [aut, cre], Aaron Halfaker [ctb], Yuvi Panda [ctb]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between ores versions 0.1.0 dated 2016-01-09 and 0.2.0 dated 2016-12-09
DESCRIPTION | 7 - MD5 | 26 +++--- NAMESPACE | 1 NEWS |only R/query.R | 190 +++++++++++++++++++++++++++++++++------------ README.md | 3 build/vignette.rds |binary inst/doc/introduction.Rmd | 5 - inst/doc/introduction.html | 71 ++++++++++------ man/check_damaging.Rd | 6 - man/check_goodfaith.Rd | 6 - man/check_quality.Rd |only man/check_reverted.Rd | 6 - man/list_models.Rd | 9 +- vignettes/introduction.Rmd | 5 - 15 files changed, 231 insertions(+), 104 deletions(-)
Title: Mixed Poisson Models
Description: The estimation of the parameters in mixed Poisson models.
Author: Alicja Wolny-Dominiak and Michal Trzesiok
Maintainer: Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>
Diff between MixedPoisson versions 1.0 dated 2015-09-02 and 2.0 dated 2016-12-09
MixedPoisson-1.0/MixedPoisson/R/pg.dist.glm.R |only MixedPoisson-1.0/MixedPoisson/R/pg.reg.glm.R |only MixedPoisson-1.0/MixedPoisson/R/pig.dist.glm.R |only MixedPoisson-1.0/MixedPoisson/R/pig.reg.glm.R |only MixedPoisson-1.0/MixedPoisson/R/pln.dist.glm.R |only MixedPoisson-1.0/MixedPoisson/R/pln.reg.glm.R |only MixedPoisson-1.0/MixedPoisson/man/pg.dist.glm.Rd |only MixedPoisson-1.0/MixedPoisson/man/pg.reg.glm.Rd |only MixedPoisson-1.0/MixedPoisson/man/pig.dist.glm.Rd |only MixedPoisson-1.0/MixedPoisson/man/pig.reg.glm.Rd |only MixedPoisson-1.0/MixedPoisson/man/pln.dist.glm.Rd |only MixedPoisson-1.0/MixedPoisson/man/pln.reg.glm.Rd |only MixedPoisson-2.0/MixedPoisson/DESCRIPTION | 12 +-- MixedPoisson-2.0/MixedPoisson/MD5 | 46 ++++++++------ MixedPoisson-2.0/MixedPoisson/NAMESPACE | 3 MixedPoisson-2.0/MixedPoisson/R/Gamma.density.R |only MixedPoisson-2.0/MixedPoisson/R/est.delta.R |only MixedPoisson-2.0/MixedPoisson/R/est.gamma.R |only MixedPoisson-2.0/MixedPoisson/R/est.nu.R |only MixedPoisson-2.0/MixedPoisson/R/invGauss.density.R |only MixedPoisson-2.0/MixedPoisson/R/lambda_m_step.R |only MixedPoisson-2.0/MixedPoisson/R/lambda_start.R |only MixedPoisson-2.0/MixedPoisson/R/ll.gamma.R |only MixedPoisson-2.0/MixedPoisson/R/ll.invGauss.R |only MixedPoisson-2.0/MixedPoisson/R/ll.lognorm.R |only MixedPoisson-2.0/MixedPoisson/R/lognorm.density.R |only MixedPoisson-2.0/MixedPoisson/R/pseudo_values.R |only MixedPoisson-2.0/MixedPoisson/man/Gamma.density.Rd |only MixedPoisson-2.0/MixedPoisson/man/MixedPoisson-package.Rd | 10 +-- MixedPoisson-2.0/MixedPoisson/man/est.delta.Rd |only MixedPoisson-2.0/MixedPoisson/man/est.gamma.Rd |only MixedPoisson-2.0/MixedPoisson/man/est.nu.Rd |only MixedPoisson-2.0/MixedPoisson/man/invGauss.density.Rd |only MixedPoisson-2.0/MixedPoisson/man/lambda_m_step.Rd |only MixedPoisson-2.0/MixedPoisson/man/lambda_start.Rd |only MixedPoisson-2.0/MixedPoisson/man/ll.gamma.Rd |only MixedPoisson-2.0/MixedPoisson/man/ll.invGauss.Rd |only MixedPoisson-2.0/MixedPoisson/man/ll.lognorm.Rd |only MixedPoisson-2.0/MixedPoisson/man/lognorm.density.Rd |only MixedPoisson-2.0/MixedPoisson/man/pg.dist.Rd | 2 MixedPoisson-2.0/MixedPoisson/man/pl.dist.Rd | 4 - MixedPoisson-2.0/MixedPoisson/man/pseudo_values.Rd |only 42 files changed, 46 insertions(+), 31 deletions(-)
Title: Fixed Sequence Multiple Testing Procedures
Description: Several generalized Fixed Sequence Multiple Testing Procedures (g-
FSMTPs) are developed for testing a sequence of pre-ordered hypotheses while
controlling the FWER and FDR. All three FWER controlling g-FSMTPs are designed
under arbitrary dependence, which allow any number of acceptances, and two
FDR controlling g-FSMTPs are respectively designed under arbitrary dependence
and independence, which allow more but a given number of acceptances. The main
functions for each proposed g-FSMTPs are designed to calculate adjusted p-values
and critical values, respectively. For users' convenience, the output results
also include the option of decision rules for convenience.
Author: Yalin Zhu, Wenge Guo
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>
Diff between FixSeqMTP versions 0.1.0 dated 2016-12-01 and 0.1.1 dated 2016-12-09
DESCRIPTION | 26 ++++++++--------- MD5 | 26 ++++++++--------- R/FSFDR.R | 60 ++++++++++++++++++++-------------------- R/FSFWER.R | 20 ++++++------- R/FixSeqMTP.R | 2 - man/FSFDR.arbidept.cv.Rd | 12 ++++---- man/FSFDR.arbidept.p.adjust.Rd | 14 ++++----- man/FSFDR.indept.cv.Rd | 12 ++++---- man/FSFDR.indept.p.adjust.Rd | 14 ++++----- man/FSFWER.arbidept.cv.Rd | 6 ++-- man/FSFWER.arbidept.p.adjust.Rd | 6 ++-- man/FixSeqMTP.Rd | 2 - man/bisection.FDR.Rd | 8 ++--- man/bisection.FWER.Rd | 8 ++--- 14 files changed, 107 insertions(+), 109 deletions(-)
Title: Fast Hierarchical Clustering Routines for R and Python
Description: This is a two-in-one package which provides interfaces to
both R and Python. It implements fast hierarchical, agglomerative
clustering routines. Part of the functionality is designed as drop-in
replacement for existing routines: linkage() in the SciPy package
'scipy.cluster.hierarchy', hclust() in R's 'stats' package, and the
'flashClust' package. It provides the same functionality with the
benefit of a much faster implementation. Moreover, there are
memory-saving routines for clustering of vector data, which go beyond
what the existing packages provide. For information on how to install
the Python files, see the file INSTALL in the source distribution.
Author: Daniel Müllner [aut, cph, cre]
Maintainer: Daniel Müllner <daniel@danifold.net>
Diff between fastcluster versions 1.1.21 dated 2016-09-19 and 1.1.22 dated 2016-12-09
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS | 5 +++++ build/vignette.rds |binary inst/doc/fastcluster.Rtex | 5 +++-- inst/doc/fastcluster.pdf |binary man/fastcluster.Rd | 2 +- man/hclust.Rd | 2 +- man/hclust.vector.Rd | 2 +- src/fastcluster.cpp | 31 ++++++++++++++++++++----------- src/python/fastcluster.py | 2 +- src/python/setup.py | 2 +- src/python/tests/nantest.py | 2 +- src/python/tests/test.py | 2 +- src/python/tests/vectortest.py | 2 +- vignettes/fastcluster.Rtex | 5 +++-- 16 files changed, 58 insertions(+), 42 deletions(-)
Title: Modelling Actual, Potential and Reference Crop
Evapotranspiration
Description: Uses data and constants to calculate potential evapotranspiration (PET) and actual evapotranspiration (AET) from 21 different formulations including Penman, Penman-Monteith FAO 56, Priestley-Taylor and Morton formulations.
Author: Danlu Guo <danlu.guo@unsw.edu.au>, Seth Westra <seth.westra@adelaide.edu.au>
Maintainer: Danlu Guo <danlu.guo@unsw.edu.au>
Diff between Evapotranspiration versions 1.9 dated 2016-04-08 and 1.10 dated 2016-12-09
DESCRIPTION | 12 - MD5 | 14 - NAMESPACE | 6 NEWS | 13 - R/Evapotranspiration.R | 187 +++++++++++----- R/Reading.R | 531 +++++++++++++++++++++++------------------------ man/ET.PenmanMonteith.Rd | 63 ++++- man/ReadInputs.Rd | 11 8 files changed, 473 insertions(+), 364 deletions(-)
More information about Evapotranspiration at CRAN
Permanent link
Title: Entropy Partitioning to Measure Diversity
Description: Measurement and partitioning of diversity, based on Tsallis entropy.
Author: Eric Marcon, Bruno Herault
Maintainer: Eric Marcon <Eric.Marcon@ecofog.gf>
Diff between entropart versions 1.4-5 dated 2016-02-17 and 1.4-6 dated 2016-12-09
DESCRIPTION | 10 +++-- MD5 | 38 ++++++++++++--------- NEWS | 13 +++++++ R/AlphaDiversity.R | 6 +-- R/AlphaEntropy.R | 6 +-- R/ArgumentOriginalName.R |only R/BetaDiversity.R | 6 +-- R/BetaEntropy.R | 6 +-- R/DivPart.R | 6 +-- R/DivProfile.R | 4 +- R/PhyloBetaEntropy.R | 8 ++-- R/PhyloDiversity.R | 8 ++-- R/PhyloEntropy.R | 10 ++--- R/rCommunity.R | 78 ++++++++++++++++++++++++++------------------ build/vignette.rds |binary inst/doc/entropart.pdf |binary man/ArgumentOriginalName.Rd |only man/mergeandlabel.Rd | 4 +- man/rCommunity.Rd | 2 - tests |only 20 files changed, 121 insertions(+), 84 deletions(-)
Title: Core Functionality for Simulating Quantities of Interest from
Generalised Linear Models
Description: Core functions for simulating quantities of interest
from generalised linear models (GLM). This package will form the backbone of
a series of other packages that improve the interpretation of GLM estimates.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between coreSim versions 0.2 dated 2016-06-22 and 0.2.3 dated 2016-12-09
coreSim-0.2.3/coreSim/DESCRIPTION | 12 - coreSim-0.2.3/coreSim/MD5 | 31 +-- coreSim-0.2.3/coreSim/NAMESPACE | 1 coreSim-0.2.3/coreSim/NEWS | 20 ++ coreSim-0.2.3/coreSim/R/b_sim.R | 34 +++ coreSim-0.2.3/coreSim/R/linear_systematic.R | 4 coreSim-0.2.3/coreSim/R/qi_builder.R | 59 +++--- coreSim-0.2.3/coreSim/R/utils.R | 95 +++++++++- coreSim-0.2.3/coreSim/man/b_sim.Rd | 16 + coreSim-0.2.3/coreSim/man/linear_systematic.Rd | 6 coreSim-0.2.3/coreSim/man/qi_builder.Rd | 42 +++- coreSim-0.2.3/coreSim/man/qi_slimmer.Rd | 8 coreSim-0.2.3/coreSim/tests/testthat.R | 2 coreSim-0.2.3/coreSim/tests/testthat/test_bsim.R |only coreSim-0.2.3/coreSim/tests/testthat/test_ci_check.R |only coreSim-0.2.3/coreSim/tests/testthat/test_interaction_builder.R |only coreSim-0.2.3/coreSim/tests/testthat/test_linear_systematic.R |only coreSim-0.2.3/coreSim/tests/testthat/test_qi_builder.R |only coreSim-0.2.3/coreSim/tests/testthat/test_qi_slimmer.R |only coreSim-0.2/coreSim/tests/testthat/test.R |only 20 files changed, 257 insertions(+), 73 deletions(-)